AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620080 MtrunA17_Chr8g0385571 97.099 517 3 1 1 517 1 505 0.0 1031
Msa0620080 MtrunA17_Chr3g0131501 78.054 483 94 1 35 517 13 483 0.0 795
Msa0620080 MtrunA17_Chr7g0252401 71.575 489 120 3 31 517 11 482 0.0 738
Msa0620080 MtrunA17_Chr5g0396801 38.436 307 162 8 237 517 36 341 1.43e-59 200
Msa0620080 MtrunA17_Chr8g0347451 36.013 311 166 8 237 517 49 356 1.04e-58 198
Msa0620080 MtrunA17_Chr3g0137941 37.410 278 170 2 237 514 120 393 1.12e-53 186
Msa0620080 MtrunA17_Chr1g0149111 38.129 278 168 2 237 514 137 410 1.37e-53 186
Msa0620080 MtrunA17_Chr4g0063561 38.351 279 166 4 237 514 121 394 4.90e-53 184
Msa0620080 MtrunA17_Chr4g0063561 27.304 293 180 9 232 512 24 295 1.16e-20 94.0
Msa0620080 MtrunA17_Chr3g0135861 32.237 304 173 7 239 516 35 331 3.90e-47 167
Msa0620080 MtrunA17_Chr6g0488081 32.258 310 187 6 223 514 2 306 4.67e-45 160
Msa0620080 MtrunA17_Chr6g0488081 33.166 199 120 4 330 517 16 212 2.24e-25 106
Msa0620080 MtrunA17_Chr7g0240341 32.119 302 169 7 239 515 25 315 3.42e-44 158
Msa0620080 MtrunA17_Chr7g0240341 30.693 202 125 4 323 512 15 213 3.61e-23 100
Msa0620080 MtrunA17_Chr7g0240341 27.753 227 150 5 199 418 98 317 1.70e-19 89.4
Msa0620080 MtrunA17_Chr2g0296061 30.820 305 171 7 241 508 17 318 6.42e-39 144
Msa0620080 MtrunA17_Chr2g0296061 31.088 193 116 3 335 512 17 207 1.07e-21 96.3
Msa0620080 MtrunA17_Chr2g0296061 26.341 205 127 6 232 413 119 322 1.77e-13 71.6
Msa0620080 MtrunA17_Chr5g0436041 32.423 293 176 7 239 514 34 321 1.28e-36 138
Msa0620080 MtrunA17_Chr5g0436041 33.696 184 112 5 238 414 140 320 1.11e-15 78.2
Msa0620080 MtrunA17_Chr5g0436041 33.000 200 115 6 326 512 27 220 1.41e-15 77.8
Msa0620080 MtrunA17_Chr4g0067231 29.936 314 178 7 241 515 16 326 3.03e-36 137
Msa0620080 MtrunA17_Chr4g0067231 25.728 206 129 6 231 413 119 323 1.12e-13 72.4
Msa0620080 MtrunA17_Chr7g0269701 32.646 291 171 8 241 514 24 306 2.34e-35 134
Msa0620080 MtrunA17_Chr4g0006851 31.818 286 165 7 239 512 89 356 2.60e-35 135
Msa0620080 MtrunA17_Chr4g0006851 30.814 172 104 5 349 514 105 267 2.56e-16 80.9
Msa0620080 MtrunA17_Chr7g0242311 29.412 272 168 7 250 512 98 354 2.05e-33 130
Msa0620080 MtrunA17_Chr7g0242311 32.749 171 102 3 349 514 103 265 5.96e-20 91.7
Msa0620080 MtrunA17_Chr7g0242311 25.862 174 122 2 241 414 189 355 7.84e-17 82.4
Msa0620080 MtrunA17_Chr3g0115801 33.775 302 172 7 236 517 113 406 5.00e-33 130
Msa0620080 MtrunA17_Chr3g0115801 25.269 186 131 3 328 513 111 288 5.89e-12 67.4
Msa0620080 MtrunA17_Chr1g0195101 31.317 281 168 7 251 514 31 303 1.43e-32 126
Msa0620080 MtrunA17_Chr8g0372531 34.875 281 161 7 255 516 30 307 5.68e-32 125
Msa0620080 MtrunA17_Chr4g0000261 29.276 304 169 10 237 511 64 350 1.83e-31 124
Msa0620080 MtrunA17_Chr4g0000261 28.235 170 114 3 249 414 187 352 7.93e-12 67.0
Msa0620080 MtrunA17_Chr8g0382201 32.039 309 180 10 230 517 186 485 1.93e-31 127
Msa0620080 MtrunA17_Chr3g0135801 26.885 305 199 6 230 516 25 323 1.21e-30 121
Msa0620080 MtrunA17_Chr6g0488341 30.081 246 148 6 275 514 4 231 4.97e-29 115
Msa0620080 MtrunA17_Chr4g0004571 27.798 277 191 5 237 508 14 286 3.23e-27 111
Msa0620080 MtrunA17_Chr4g0004571 28.497 193 122 7 329 514 11 194 7.73e-12 66.2
Msa0620080 MtrunA17_Chr5g0423111 32.740 281 164 9 251 514 33 305 2.07e-26 110
Msa0620080 MtrunA17_Chr5g0423111 28.947 190 114 6 251 425 131 314 2.72e-12 68.2
Msa0620080 MtrunA17_Chr8g0393031 27.143 280 184 6 239 502 18 293 4.26e-25 105
Msa0620080 MtrunA17_Chr1g0200171 22.511 462 319 12 57 515 360 785 1.29e-24 108
Msa0620080 MtrunA17_Chr3g0086811 27.864 323 196 8 226 515 14 332 1.53e-24 105
Msa0620080 MtrunA17_Chr6g0463041 29.091 220 114 4 333 514 25 240 1.96e-23 99.4
Msa0620080 MtrunA17_Chr8g0386871 26.644 289 202 4 230 517 311 590 3.29e-22 100
Msa0620080 MtrunA17_Chr5g0431531 29.000 300 187 11 226 511 24 311 1.41e-21 95.9
Msa0620080 MtrunA17_Chr5g0431531 28.962 183 122 2 333 515 39 213 5.41e-20 91.3
Msa0620080 MtrunA17_Chr6g0463351 28.464 267 170 7 255 511 83 338 5.00e-21 94.7
Msa0620080 MtrunA17_Chr2g0331771 27.915 283 198 3 237 515 154 434 1.59e-20 94.0
Msa0620080 MtrunA17_Chr1g0201361 28.417 278 171 7 240 514 52 304 1.62e-20 92.4
Msa0620080 MtrunA17_Chr3g0088301 28.028 289 170 9 239 502 93 368 2.73e-20 92.8
Msa0620080 MtrunA17_Chr8g0383321 29.032 279 168 7 240 514 53 305 1.10e-19 90.1
Msa0620080 MtrunA17_Chr1g0205941 29.431 299 172 13 241 513 13 298 1.87e-18 86.3
Msa0620080 MtrunA17_Chr8g0352031 26.667 285 180 7 239 502 68 344 1.90e-18 87.0
Msa0620080 MtrunA17_Chr4g0008061 28.231 294 178 10 239 512 15 295 7.92e-18 84.3
Msa0620080 MtrunA17_Chr1g0196921 30.168 179 113 5 322 493 4 177 1.58e-17 83.6
Msa0620080 MtrunA17_Chr1g0196921 24.468 282 195 6 244 512 19 295 1.89e-16 80.1
Msa0620080 MtrunA17_Chr5g0436571 26.296 270 155 10 278 510 53 315 2.08e-17 83.6
Msa0620080 MtrunA17_Chr8g0366791 26.578 301 180 7 241 514 11 297 2.74e-17 82.4
Msa0620080 MtrunA17_Chr8g0366791 28.426 197 121 7 333 514 9 200 1.36e-13 71.6
Msa0620080 MtrunA17_Chr4g0040341 27.465 284 178 9 239 502 75 350 3.77e-17 83.2
Msa0620080 MtrunA17_Chr5g0411411 26.910 301 189 8 236 514 6 297 4.26e-16 79.0
Msa0620080 MtrunA17_Chr2g0328891 27.500 280 183 7 239 502 66 341 5.99e-16 79.3
Msa0620080 MtrunA17_Chr7g0275411 25.098 255 171 7 278 515 85 336 1.87e-15 77.8
Msa0620080 MtrunA17_Chr2g0293621 26.174 298 195 11 235 512 25 317 3.29e-15 77.0
Msa0620080 MtrunA17_Chr2g0293621 27.411 197 126 3 236 415 123 319 3.18e-13 70.9
Msa0620080 MtrunA17_Chr7g0241521 26.846 298 177 9 239 512 17 297 3.64e-15 76.3
Msa0620080 MtrunA17_Chr1g0163521 25.168 298 166 10 272 516 64 357 1.34e-14 75.5
Msa0620080 MtrunA17_Chr4g0028531 23.841 302 212 8 221 510 4 299 2.93e-14 73.9
Msa0620080 MtrunA17_Chr6g0455381 23.377 308 208 8 226 512 4 304 3.95e-14 73.6
Msa0620080 MtrunA17_Chr6g0455381 26.857 175 121 4 345 514 29 201 5.18e-13 70.1
Msa0620080 MtrunA17_Chr6g0488171 33.663 101 65 1 416 514 2 102 8.16e-14 67.8
Msa0620080 MtrunA17_Chr7g0219891 22.549 306 195 9 235 512 17 308 2.36e-13 71.2
Msa0620080 MtrunA17_Chr7g0219891 28.571 210 127 7 226 417 108 312 1.02e-12 69.3
Msa0620080 MtrunA17_Chr4g0051841 23.404 282 197 9 239 511 29 300 2.68e-13 70.9
Msa0620080 MtrunA17_Chr6g0461981 28.436 211 142 5 240 444 64 271 4.45e-13 70.9
Msa0620080 MtrunA17_Chr6g0461981 25.281 178 122 4 336 510 66 235 6.93e-11 63.9
Msa0620080 MtrunA17_Chr5g0407451 26.286 175 119 4 336 509 23 188 1.04e-12 68.9
Msa0620080 MtrunA17_Chr4g0046981 28.571 189 122 4 335 514 14 198 1.20e-12 68.9
Msa0620080 MtrunA17_Chr1g0196161 28.889 180 123 4 339 517 3 178 1.69e-12 66.2
Msa0620080 MtrunA17_Chr7g0251981 30.734 218 136 7 241 447 83 296 2.71e-12 68.6
Msa0620080 MtrunA17_Chr3g0103681 24.839 310 185 9 231 512 7 296 5.92e-12 66.6
Msa0620080 MtrunA17_Chr8g0385891 27.602 221 139 6 241 447 74 287 8.11e-12 66.6
Msa0620080 MtrunA17_Chr8g0385891 28.042 189 113 7 329 510 73 245 2.07e-11 65.5
Msa0620080 MtrunA17_Chr1g0157131 28.205 156 90 4 56 206 380 518 9.66e-12 67.4
Msa0620080 MtrunA17_Chr3g0126331 23.846 260 175 7 276 515 132 388 1.44e-11 66.2
Msa0620080 MtrunA17_Chr5g0416661 27.241 290 182 10 241 510 13 293 1.68e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620080 AT5G51050.1 72.603 511 121 4 9 517 5 498 0.0 760
Msa0620080 AT5G07320.1 73.306 487 110 3 31 517 13 479 0.0 739
Msa0620080 AT5G61810.1 67.076 489 139 5 30 517 11 478 0.0 682
Msa0620080 AT5G61810.2 70.640 344 91 4 175 517 1 335 8.17e-178 503
Msa0620080 AT4G01100.1 38.462 312 157 8 237 517 40 347 1.14e-62 209
Msa0620080 AT4G01100.2 35.411 353 169 11 216 517 17 361 7.61e-60 202
Msa0620080 AT4G01100.3 38.333 300 150 8 249 517 2 297 5.61e-59 197
Msa0620080 AT4G01100.3 25.714 175 125 1 342 511 1 175 1.85e-18 86.7
Msa0620080 AT4G01100.3 28.846 208 120 6 241 422 97 302 3.55e-14 73.9
Msa0620080 AT4G32400.1 36.918 279 170 3 237 514 112 385 2.10e-52 183
Msa0620080 AT4G32400.1 30.366 191 130 3 226 414 195 384 9.33e-18 85.9
Msa0620080 AT3G53940.1 35.274 292 171 6 239 515 73 361 7.55e-46 164
Msa0620080 AT3G53940.1 32.367 207 126 6 314 511 57 258 2.62e-21 95.9
Msa0620080 AT3G53940.1 29.060 234 133 6 188 414 152 359 6.78e-21 94.7
Msa0620080 AT4G26180.1 31.229 301 180 6 236 516 18 311 1.20e-44 160
Msa0620080 AT3G55640.1 34.114 299 173 9 231 511 30 322 2.31e-43 157
Msa0620080 AT3G55640.1 30.288 208 122 7 320 512 25 224 1.39e-19 90.5
Msa0620080 AT3G55640.4 34.114 299 173 9 231 511 30 322 2.31e-43 157
Msa0620080 AT3G55640.4 30.288 208 122 7 320 512 25 224 1.39e-19 90.5
Msa0620080 AT1G14560.1 31.930 285 166 8 250 511 38 317 7.85e-41 150
Msa0620080 AT1G14560.1 29.412 187 111 4 344 514 38 219 1.42e-19 90.5
Msa0620080 AT2G37890.1 31.757 296 174 6 239 514 45 332 2.91e-40 149
Msa0620080 AT2G37890.1 34.518 197 118 4 324 511 36 230 1.20e-24 105
Msa0620080 AT2G37890.1 35.326 184 109 5 238 414 151 331 6.10e-24 103
Msa0620080 AT4G26180.2 30.634 284 164 6 236 496 18 291 5.64e-39 144
Msa0620080 AT4G26180.2 32.663 199 115 4 330 514 18 211 3.56e-25 105
Msa0620080 AT3G21390.1 30.293 307 172 7 241 508 21 324 1.49e-35 135
Msa0620080 AT3G21390.1 29.319 191 120 3 335 512 21 209 4.42e-20 92.0
Msa0620080 AT3G21390.2 30.293 307 172 7 241 508 43 346 1.62e-35 136
Msa0620080 AT3G21390.2 29.319 191 120 3 335 512 43 231 5.23e-20 92.0
Msa0620080 AT1G14560.2 31.111 270 158 8 250 496 38 302 8.20e-35 133
Msa0620080 AT1G14560.2 29.412 187 111 4 344 514 38 219 8.32e-20 90.5
Msa0620080 AT5G64970.1 31.562 320 185 8 221 517 117 425 3.21e-34 134
Msa0620080 AT5G66380.1 33.677 291 174 6 241 514 12 300 3.48e-34 131
Msa0620080 AT3G51870.1 30.515 272 165 7 250 512 102 358 4.17e-34 133
Msa0620080 AT3G51870.1 30.409 171 106 3 349 514 107 269 1.44e-17 85.1
Msa0620080 AT3G51870.1 26.136 176 119 3 241 414 193 359 3.17e-14 74.7
Msa0620080 AT5G01500.1 31.868 273 160 9 250 512 130 386 3.08e-33 131
Msa0620080 AT5G01500.1 32.749 171 102 3 349 514 135 297 1.34e-19 91.7
Msa0620080 AT5G01500.1 29.310 174 116 2 241 414 221 387 2.61e-13 72.4
Msa0620080 AT5G64970.2 32.226 301 170 8 240 517 12 301 1.06e-32 127
Msa0620080 AT5G48970.1 29.545 308 174 8 241 508 24 328 2.16e-32 127
Msa0620080 AT5G48970.1 31.088 193 116 4 335 512 24 214 1.53e-20 93.2
Msa0620080 AT5G48970.1 26.190 210 124 6 232 413 126 332 1.39e-14 75.5
Msa0620080 AT3G20240.1 28.990 307 178 7 234 514 47 339 1.74e-29 119
Msa0620080 AT2G47490.1 31.522 276 173 6 251 514 29 300 1.18e-28 116
Msa0620080 AT5G56450.1 26.073 303 198 6 234 515 29 326 1.41e-28 116
Msa0620080 AT1G78180.1 30.693 303 186 5 233 517 122 418 1.67e-28 117
Msa0620080 AT3G53940.2 35.321 218 125 5 239 443 73 287 2.42e-28 114
Msa0620080 AT3G53940.2 32.367 207 126 6 314 511 57 258 5.97e-22 96.7
Msa0620080 AT3G55640.2 34.061 229 129 7 231 443 30 252 4.35e-28 113
Msa0620080 AT3G55640.2 30.288 208 122 7 320 512 25 224 1.90e-20 91.3
Msa0620080 AT3G55640.3 34.061 229 129 7 231 443 30 252 4.35e-28 113
Msa0620080 AT3G55640.3 30.288 208 122 7 320 512 25 224 1.90e-20 91.3
Msa0620080 AT5G48970.2 30.000 260 156 7 272 508 1 257 2.61e-27 111
Msa0620080 AT5G48970.2 34.043 141 89 3 374 512 5 143 2.41e-17 82.8
Msa0620080 AT5G48970.2 26.190 210 124 6 232 413 55 261 3.45e-15 76.3
Msa0620080 AT5G64970.3 30.435 299 174 8 221 496 117 404 5.43e-27 113
Msa0620080 AT5G64970.3 28.649 185 124 3 327 511 129 305 1.39e-13 73.2
Msa0620080 AT2G35800.1 23.030 495 334 13 23 514 355 805 6.39e-27 115
Msa0620080 AT1G25380.1 31.408 277 166 9 251 510 33 302 1.19e-26 111
Msa0620080 AT1G25380.2 31.408 277 166 9 251 510 33 302 1.19e-26 111
Msa0620080 AT1G14560.3 32.161 199 111 6 333 511 25 219 6.08e-26 106
Msa0620080 AT1G14560.3 27.966 118 69 2 413 514 4 121 1.06e-11 65.5
Msa0620080 AT1G14560.3 25.500 200 120 5 239 413 25 220 3.44e-11 63.9
Msa0620080 AT1G74240.1 27.476 313 182 6 237 514 34 336 3.28e-25 107
Msa0620080 AT1G74240.1 26.601 203 122 4 336 515 39 237 1.82e-14 75.5
Msa0620080 AT1G34065.1 28.669 293 171 9 232 515 73 336 1.28e-22 99.8
Msa0620080 AT1G34065.2 28.669 293 171 9 232 515 66 329 1.90e-22 99.0
Msa0620080 AT5G17400.1 28.669 293 183 8 229 502 4 289 2.19e-22 98.2
Msa0620080 AT4G11440.1 26.102 295 208 4 226 516 317 605 8.77e-22 99.4
Msa0620080 AT4G11440.2 26.102 295 208 4 226 516 317 605 8.77e-22 99.4
Msa0620080 AT2G30160.1 27.915 283 186 5 240 511 43 318 2.10e-21 95.9
Msa0620080 AT2G30160.1 27.322 183 123 4 333 514 42 215 3.55e-14 74.3
Msa0620080 AT1G74240.2 26.441 295 172 6 255 514 4 288 3.10e-21 95.1
Msa0620080 AT1G74240.2 25.521 192 116 4 347 515 2 189 1.72e-11 65.9
Msa0620080 AT1G14140.1 26.855 283 186 9 244 511 21 297 1.77e-20 92.4
Msa0620080 AT1G14140.1 27.746 173 117 4 329 493 12 184 6.96e-15 75.9
Msa0620080 AT1G07030.1 28.472 288 181 7 237 511 38 313 1.81e-20 92.8
Msa0620080 AT1G07030.1 27.473 182 124 2 333 514 40 213 1.98e-15 77.8
Msa0620080 AT4G39460.2 29.391 279 169 6 239 514 58 311 1.91e-20 92.8
Msa0620080 AT4G39460.1 29.391 279 169 6 239 514 58 311 1.91e-20 92.8
Msa0620080 AT4G39460.3 29.391 279 169 6 239 514 58 311 1.91e-20 92.8
Msa0620080 AT5G58970.1 26.990 289 188 6 239 512 16 296 4.23e-20 91.3
Msa0620080 AT3G54110.1 28.082 292 185 8 237 512 13 295 1.49e-18 87.0
Msa0620080 AT4G28390.1 27.817 284 177 9 239 502 83 358 1.77e-18 87.8
Msa0620080 AT4G28390.2 27.817 284 177 9 239 502 83 358 1.77e-18 87.8
Msa0620080 AT5G46800.2 26.263 297 189 7 241 514 10 299 2.52e-18 86.3
Msa0620080 AT5G46800.3 26.263 297 189 7 241 514 10 299 2.52e-18 86.3
Msa0620080 AT5G46800.1 26.263 297 189 7 241 514 10 299 2.52e-18 86.3
Msa0620080 AT5G13490.1 27.148 291 171 10 239 502 88 364 3.32e-17 84.0
Msa0620080 AT5G13490.2 27.148 291 171 10 239 502 88 364 3.32e-17 84.0
Msa0620080 AT5G42130.1 26.316 266 178 5 255 511 134 390 6.72e-17 83.2
Msa0620080 AT3G08580.2 26.316 285 181 7 239 502 84 360 1.10e-16 82.4
Msa0620080 AT3G08580.1 26.316 285 181 7 239 502 84 360 1.10e-16 82.4
Msa0620080 AT1G79900.1 24.621 264 191 2 245 508 22 277 4.98e-16 79.3
Msa0620080 AT1G79900.1 30.409 171 111 4 242 409 112 277 2.45e-14 74.3
Msa0620080 AT3G05290.1 27.703 296 175 12 241 510 13 295 2.10e-15 77.8
Msa0620080 AT2G39970.1 24.176 273 171 10 278 516 53 323 5.42e-15 76.6
Msa0620080 AT5G15640.2 24.013 304 207 7 229 512 11 310 1.40e-14 75.1
Msa0620080 AT5G27520.1 28.231 294 176 11 241 510 15 297 3.08e-14 74.3
Msa0620080 AT2G33820.1 25.249 301 192 11 239 516 18 308 3.92e-14 73.9
Msa0620080 AT5G01340.1 23.345 287 195 9 240 510 18 295 5.86e-14 73.2
Msa0620080 AT5G26200.1 27.273 308 195 10 231 512 31 335 6.46e-14 73.6
Msa0620080 AT5G26200.1 28.378 222 132 8 222 417 119 339 3.41e-11 65.1
Msa0620080 AT2G26360.1 25.532 282 194 7 234 514 110 376 7.47e-14 73.9
Msa0620080 AT5G15640.1 23.826 298 203 7 235 512 24 317 9.63e-14 72.8
Msa0620080 AT4G27940.1 24.506 253 169 5 278 511 155 404 1.13e-12 70.5
Msa0620080 AT3G48850.1 27.119 177 120 3 335 509 73 242 2.31e-12 68.9
Msa0620080 AT3G48850.1 29.258 229 146 7 232 447 60 285 3.28e-11 65.5
Msa0620080 AT4G24570.1 23.750 320 189 9 237 514 4 310 4.50e-12 67.8
Msa0620080 AT2G33820.3 24.595 309 192 12 239 516 18 316 5.90e-12 67.4
Msa0620080 AT1G72820.1 22.581 310 208 7 235 512 27 336 6.78e-12 67.4
Msa0620080 AT1G72820.1 25.974 231 135 7 222 417 111 340 9.13e-12 67.0
Msa0620080 AT1G72820.2 22.581 310 208 7 235 512 27 336 6.78e-12 67.4
Msa0620080 AT1G72820.2 25.974 231 135 7 222 417 111 340 9.13e-12 67.0
Msa0620080 AT5G14040.1 26.344 186 122 5 330 510 79 254 7.90e-12 67.4
Msa0620080 AT5G14040.1 29.200 250 159 9 242 477 84 329 4.69e-11 65.1
Msa0620080 AT4G03115.3 23.860 285 191 7 238 511 69 338 4.27e-11 65.1
Msa0620080 AT4G03115.2 26.923 182 117 6 337 514 42 211 6.47e-11 62.8
Msa0620080 AT4G03115.1 23.860 285 191 7 238 511 37 306 7.87e-11 63.9
Msa0620080 AT4G03115.4 26.923 182 117 6 337 514 42 211 9.28e-11 62.4

Find 166 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTCGGGGTTTCAAAATT+TGG 0.134740 4_2:-71357751 None:intergenic
TGCTACTAACAAAGGGTATT+TGG 0.164478 4_2:+71357977 Msa0620080:CDS
TGGCAACGAGACGGTTTATT+AGG 0.203876 4_2:+71359972 Msa0620080:CDS
CTTGGATGTGGGACAGTTTC+GGG 0.228064 4_2:+71360551 Msa0620080:CDS
GGCCTTGTTCCATCTCTTCT+TGG 0.236132 4_2:+71360299 Msa0620080:CDS
GTCAGATATAATATATTTCT+TGG 0.259740 4_2:-71360378 None:intergenic
AGAAGTCGCCGGAGATGATT+TGG 0.282313 4_2:-71357829 None:intergenic
TTCAATGGATCATGTTCTAT+TGG 0.289968 4_2:+71357893 Msa0620080:CDS
TCCTTAGCATATTTATATTC+AGG 0.292787 4_2:-71358044 None:intergenic
AACTAAAAGTTTGAGAAATT+AGG 0.298678 4_2:+71361524 Msa0620080:three_prime_UTR
ACCACCTCTCTTCAAATTTC+AGG 0.299337 4_2:+71357462 Msa0620080:five_prime_UTR
CTCGAAAGCCTTCGTCCTTA+AGG 0.303116 4_2:-71361217 None:intergenic
GGCACAACTTTGAGGAGATT+TGG 0.303845 4_2:-71361260 None:intergenic
TTCAAATTCAAATGCTTCAC+TGG 0.314602 4_2:+71357715 Msa0620080:five_prime_UTR
CGCCGGAGATGATTTGGGTT+TGG 0.315050 4_2:-71357823 None:intergenic
TATTCTTCCTGAAGAACTTT+GGG 0.325825 4_2:+71358196 Msa0620080:CDS
TGTTCGGGGTTTCAAAATTT+GGG 0.337056 4_2:-71357750 None:intergenic
GCTGATTTCAAATGTTATAT+AGG 0.340376 4_2:+71361367 Msa0620080:three_prime_UTR
ACCCACGTGGTCCATGTCTA+TGG 0.340694 4_2:-71357796 None:intergenic
TTCATAAGCATAAAACTTGA+TGG 0.341735 4_2:-71360045 None:intergenic
TCTATATATATCAAGTTATT+AGG 0.343183 4_2:+71361556 Msa0620080:three_prime_UTR
ACTTGGATGTGGGACAGTTT+CGG 0.345888 4_2:+71360550 Msa0620080:CDS
GAACCCTTACAAAGGATATA+TGG 0.347440 4_2:+71360246 Msa0620080:CDS
TCGAAAGCCTTCGTCCTTAA+GGG 0.350475 4_2:-71361216 None:intergenic
CTTCATTACTGCTGGCATAA+TGG 0.353220 4_2:-71359946 None:intergenic
AGAGCATCCCAAAGTTCTTC+AGG 0.374338 4_2:-71358203 None:intergenic
TGCAGCATCAAAGCTGGCTT+TGG 0.374489 4_2:-71359598 None:intergenic
TGCCATGCTTCTCAGGCTGC+AGG 0.378131 4_2:+71361136 Msa0620080:intron
GGCAACGAGACGGTTTATTA+GGG 0.381008 4_2:+71359973 Msa0620080:CDS
GCTATTGATGTTGAACATAA+TGG 0.381502 4_2:+71358170 Msa0620080:CDS
CAACACTTCTAGTGCTTACA+AGG 0.382786 4_2:+71361169 Msa0620080:CDS
GGGTAAAGTACATATCAAAA+TGG 0.390966 4_2:-71361585 None:intergenic
GGATCCATATATCCTTTGTA+AGG 0.391902 4_2:-71360250 None:intergenic
TTTCTTGGATATATCTTTCA+AGG 0.392181 4_2:-71360363 None:intergenic
GTATTCTTCCTGAAGAACTT+TGG 0.396947 4_2:+71358195 Msa0620080:CDS
ATGATCCATTGAAATTGAAC+CGG 0.400793 4_2:-71357883 None:intergenic
TATCCTTTGTAAGGGTTCCT+AGG 0.406046 4_2:-71360241 None:intergenic
AAAACCCGGTTCAATTTCAA+TGG 0.412723 4_2:+71357878 Msa0620080:CDS
TGCCAGCAGTAATGAAGATA+TGG 0.415808 4_2:+71359952 Msa0620080:CDS
GAAGTCGCCGGAGATGATTT+GGG 0.420586 4_2:-71357828 None:intergenic
CAAGGGAACAAGTCAGATAT+TGG 0.420941 4_2:+71360095 Msa0620080:CDS
TTTGTAAGGGTTCCTAGGTT+CGG 0.421581 4_2:-71360236 None:intergenic
GGGACAGTTTCGGGAGCTCT+TGG 0.425562 4_2:+71360560 Msa0620080:CDS
CTTTGTTGAGCATGTTGATA+AGG 0.428962 4_2:+71359653 Msa0620080:CDS
ATAACATTTGAAATCAGCTC+TGG 0.430191 4_2:-71361362 None:intergenic
AAGAAAGGGATGTTCGTATT+CGG 0.433508 4_2:+71357934 Msa0620080:CDS
TTAATATAAGACACTAATAG+TGG 0.434861 4_2:-71361606 None:intergenic
ACATGCTTGCTGATGCCTTC+AGG 0.436950 4_2:-71359810 None:intergenic
CATGTTGATAAGGATAATAA+TGG 0.437979 4_2:+71359663 Msa0620080:CDS
TGCCATATCTTCATTACTGC+TGG 0.447668 4_2:-71359954 None:intergenic
CTTGGTATGATTCCTTATGC+AGG 0.448812 4_2:+71360317 Msa0620080:CDS
TGAAAATATATATCAACATT+GGG 0.450630 4_2:+71359746 Msa0620080:CDS
TTGCAGCCGGCACAACTTTG+AGG 0.450795 4_2:-71361268 None:intergenic
ATTGGCTTTGCGTGAGACTA+AGG 0.453356 4_2:+71357911 Msa0620080:CDS
AGAAAGCCCGGGGTCCCTCT+TGG 0.455646 4_2:-71360271 None:intergenic
CATTGGATCTTATCAAAACT+AGG 0.459278 4_2:+71360180 Msa0620080:CDS
AGCATTTGAATTTGAAGAAG+TGG 0.460556 4_2:-71357708 None:intergenic
AGGACATCTTAAAATGTTGA+TGG 0.463643 4_2:+71361387 Msa0620080:three_prime_UTR
GATTATGCTCACATTGAAGC+AGG 0.464288 4_2:+71357999 Msa0620080:CDS
TTACAAGTAGTGATTCTTCA+AGG 0.464396 4_2:+71361449 Msa0620080:three_prime_UTR
CACAGCATAAAACACATGTC+TGG 0.464489 4_2:+71357771 Msa0620080:exon
TTGAAGAGAGGTGGTGATGA+CGG 0.467107 4_2:-71357454 None:intergenic
TGGGATGCTCTTGTCAAGGC+TGG 0.469628 4_2:+71358215 Msa0620080:CDS
GGACCCCGGGCTTTCTATAG+AGG 0.470590 4_2:+71360278 Msa0620080:CDS
GGCTGCAAGTATTACTTACA+TGG 0.473791 4_2:+71361283 Msa0620080:CDS
TTCTTTGATGCTACTAACAA+AGG 0.474500 4_2:+71357969 Msa0620080:CDS
CAAGGCCTCTATAGAAAGCC+CGG 0.474710 4_2:-71360283 None:intergenic
AATCCCTGCAGCATCAAAGC+TGG 0.477739 4_2:-71359604 None:intergenic
GTAATGGTGGATAGAATTGA+TGG 0.482284 4_2:+71361673 Msa0620080:three_prime_UTR
TGATGGACGACATTCTTATG+AGG 0.483672 4_2:+71361690 Msa0620080:three_prime_UTR
GTGAGATCAATGCCTGCATA+AGG 0.489678 4_2:-71360329 None:intergenic
TTGAAAATATATATCAACAT+TGG 0.489803 4_2:+71359745 Msa0620080:CDS
CTTGTAAGCACTAGAAGTGT+TGG 0.492262 4_2:-71361168 None:intergenic
AAAGCCAGCTTTGATGCTGC+AGG 0.493076 4_2:+71359600 Msa0620080:CDS
TATCATAAATATATACAGAT+TGG 0.493944 4_2:+71361639 Msa0620080:three_prime_UTR
CTTAAGGACGAAGGCTTTCG+AGG 0.496296 4_2:+71361218 Msa0620080:CDS
TGCGTGAGACTAAGGAAGAA+AGG 0.499336 4_2:+71357919 Msa0620080:CDS
TAAAACTTGATGGCGCTCTC+AGG 0.501460 4_2:-71360035 None:intergenic
CCTGGTCCTCTAGTACAACT+TGG 0.503374 4_2:+71360533 Msa0620080:CDS
TACTTGTGTCTATCCACTGC+AGG 0.508122 4_2:+71360586 Msa0620080:CDS
CTCCAAACCCAAATCATCTC+CGG 0.511140 4_2:+71357821 Msa0620080:CDS
CTTGTTCTCCAATGTCTACA+AGG 0.511918 4_2:-71359779 None:intergenic
CACTGCAGGTTATTCGTACA+AGG 0.514518 4_2:+71360600 Msa0620080:CDS
ACAGCATAAAACACATGTCT+GGG 0.515812 4_2:+71357772 Msa0620080:exon
TCTTTGATGCTACTAACAAA+GGG 0.519028 4_2:+71357970 Msa0620080:CDS
TGCTCCTCTTGATCGTCTAA+AGG 0.526318 4_2:+71359893 Msa0620080:CDS
ACAGATTGCTATCTATCCAT+TGG 0.526332 4_2:+71360163 Msa0620080:CDS
CCTCTAGTACAACTTGGATG+TGG 0.526958 4_2:+71360539 Msa0620080:CDS
AAGTCAGATATTGGTACTGC+CGG 0.527417 4_2:+71360104 Msa0620080:CDS
AAATCTCCTCAAAGTTGTGC+CGG 0.530979 4_2:+71361262 Msa0620080:CDS
GATCCATATATCCTTTGTAA+GGG 0.533301 4_2:-71360249 None:intergenic
TCAAATTCAAATGCTTCACT+GGG 0.534194 4_2:+71357716 Msa0620080:five_prime_UTR
TGATCCATTGAAATTGAACC+GGG 0.535986 4_2:-71357882 None:intergenic
AAAATGAGAGTAATTAAGAG+AGG 0.541868 4_2:-71357349 None:intergenic
CCAAGTTGTACTAGAGGACC+AGG 0.543145 4_2:-71360533 None:intergenic
ACTTCTCCGACCACCGATCA+CGG 0.543289 4_2:+71357846 Msa0620080:CDS
TATGGATCCAAGAGGGACCC+CGG 0.549177 4_2:+71360264 Msa0620080:CDS
GCGTGAGACTAAGGAAGAAA+GGG 0.551313 4_2:+71357920 Msa0620080:CDS
GGAATCATACCAAGAAGAGA+TGG 0.555459 4_2:-71360308 None:intergenic
CAGACATGTGCGTCTGAAGG+TGG 0.558424 4_2:+71360206 Msa0620080:CDS
AGGCTTTCGAGGGTTCTACA+AGG 0.560865 4_2:+71361229 Msa0620080:CDS
TTAGCATATTTATATTCAGG+TGG 0.563760 4_2:-71358041 None:intergenic
GGTGGAAAGGCTCCGAACCT+AGG 0.563950 4_2:+71360224 Msa0620080:CDS
CTACTTGTAATAGTGCCTAC+AGG 0.565305 4_2:-71361436 None:intergenic
ATTTGTGATGCTGATAGAGA+TGG 0.565356 4_2:+71358077 Msa0620080:CDS
CATGTCTGGGGCCATAGACA+TGG 0.566057 4_2:+71357785 Msa0620080:exon
ATGGATCCAAGAGGGACCCC+GGG 0.571593 4_2:+71360265 Msa0620080:CDS
ATATATATCAACATTGGGAG+AGG 0.571984 4_2:+71359751 Msa0620080:CDS
AAGGCCTCTATAGAAAGCCC+GGG 0.573250 4_2:-71360282 None:intergenic
CCGACCACCGATCACGGCCG+TGG 0.575645 4_2:+71357852 Msa0620080:CDS
ACCTGAATATAAATATGCTA+AGG 0.576019 4_2:+71358043 Msa0620080:CDS
GTGGTCTTACAAATTCAGAC+TGG 0.577576 4_2:+71359915 Msa0620080:CDS
CTCTAGTACAACTTGGATGT+GGG 0.578834 4_2:+71360540 Msa0620080:CDS
AGGGTATGCCTTGTAGACAT+TGG 0.583161 4_2:+71359771 Msa0620080:CDS
AAGTAGTGATTCTTCAAGGA+GGG 0.583742 4_2:+71361453 Msa0620080:three_prime_UTR
GCATCAGCAAGCATGTGCAC+AGG 0.584381 4_2:+71359817 Msa0620080:CDS
AATGTAATTGGAGATAGTCA+AGG 0.585996 4_2:+71360077 Msa0620080:CDS
TGGAAAACCCTTAAGGACGA+AGG 0.588718 4_2:+71361209 Msa0620080:CDS
TAATATAAGACACTAATAGT+GGG 0.588803 4_2:-71361605 None:intergenic
CTTGTACGAATAACCTGCAG+TGG 0.590465 4_2:-71360599 None:intergenic
ATTGGCGCATGGCTTTGTAA+TGG 0.592596 4_2:+71361657 Msa0620080:three_prime_UTR
TAATGGGTTGAATGTTGTGA+AGG 0.593361 4_2:+71360007 Msa0620080:CDS
TTAAGGACGAAGGCTTTCGA+GGG 0.595236 4_2:+71361219 Msa0620080:CDS
GGCGCATGGCTTTGTAATGG+TGG 0.601202 4_2:+71361660 Msa0620080:three_prime_UTR
GAGAGATTAACTAATCCTGT+AGG 0.601229 4_2:+71361421 Msa0620080:three_prime_UTR
ACTTTGGGATGCTCTTGTCA+AGG 0.602469 4_2:+71358211 Msa0620080:CDS
ACCTGAAATTTGAAGAGAGG+TGG 0.603519 4_2:-71357463 None:intergenic
TAACATTTGAAATCAGCTCT+GGG 0.606800 4_2:-71361361 None:intergenic
ATGTAATTGGAGATAGTCAA+GGG 0.608848 4_2:+71360078 Msa0620080:CDS
ACCACCTTTAGACGATCAAG+AGG 0.609465 4_2:-71359897 None:intergenic
GCGTTACGTTATGTTTGATG+CGG 0.610975 4_2:-71357387 None:intergenic
TTTACCACGGCCGTGATCGG+TGG 0.612531 4_2:-71357856 None:intergenic
AAGCCAGCTTTGATGCTGCA+GGG 0.613413 4_2:+71359601 Msa0620080:CDS
ATTATGCTCACATTGAAGCA+GGG 0.615028 4_2:+71358000 Msa0620080:CDS
TAAGCACTAGAAGTGTTGGT+AGG 0.615335 4_2:-71361164 None:intergenic
TTTGTGATGCTGATAGAGAT+GGG 0.615874 4_2:+71358078 Msa0620080:CDS
ATGTGCGTCTGAAGGTGGAA+AGG 0.616080 4_2:+71360211 Msa0620080:CDS
GAACAAGCTGTCATTCCTGA+AGG 0.618005 4_2:+71359795 Msa0620080:CDS
GGCTTTCGAGGGTTCTACAA+GGG 0.618467 4_2:+71361230 Msa0620080:CDS
TATATATCAACATTGGGAGA+GGG 0.618834 4_2:+71359752 Msa0620080:CDS
GGCCATAGACATGGACCACG+TGG 0.619134 4_2:+71357794 Msa0620080:CDS
GGTACCTGAAATTTGAAGAG+AGG 0.619972 4_2:-71357466 None:intergenic
TTACAGACATGTGCGTCTGA+AGG 0.627961 4_2:+71360203 Msa0620080:CDS
CAACATTCAACCCATTACCT+CGG 0.628881 4_2:-71360001 None:intergenic
ATGTAAGTAATACTTGCAGC+CGG 0.630205 4_2:-71361281 None:intergenic
TCCTCTTGATCGTCTAAAGG+TGG 0.632322 4_2:+71359896 Msa0620080:CDS
CCACGGCCGTGATCGGTGGT+CGG 0.632763 4_2:-71357852 None:intergenic
CCACATCCAAGTTGTACTAG+AGG 0.639833 4_2:-71360539 None:intergenic
AATATATACAGATTGGCGCA+TGG 0.642492 4_2:+71361646 Msa0620080:three_prime_UTR
ATAGATAGCAATCTGTGCAA+TGG 0.645374 4_2:-71360156 None:intergenic
TCGGTGGTCGGAGAAGTCGC+CGG 0.645691 4_2:-71357840 None:intergenic
CTTACAAATTCAGACTGGAA+AGG 0.645930 4_2:+71359920 Msa0620080:CDS
AAGGATATATGGATCCAAGA+GGG 0.650322 4_2:+71360257 Msa0620080:CDS
TACCAAGAAGAGATGGAACA+AGG 0.652820 4_2:-71360301 None:intergenic
AACACTTCTAGTGCTTACAA+GGG 0.655900 4_2:+71361170 Msa0620080:CDS
AAATATATTATATCTGACCA+TGG 0.657158 4_2:+71360383 Msa0620080:CDS
ATGAAGATATGGCAACGAGA+CGG 0.675716 4_2:+71359963 Msa0620080:CDS
CAAGTAGTGATTCTTCAAGG+AGG 0.676445 4_2:+71361452 Msa0620080:three_prime_UTR
GAGTAATTAAGAGAGGAGAG+AGG 0.677873 4_2:-71357342 None:intergenic
TGCAGGGATTGAAATTGATG+AGG 0.683016 4_2:+71359617 Msa0620080:CDS
GCCATAGACATGGACCACGT+GGG 0.686014 4_2:+71357795 Msa0620080:CDS
AAAGGATATATGGATCCAAG+AGG 0.690784 4_2:+71360256 Msa0620080:CDS
GAACCTAGGAACCCTTACAA+AGG 0.697269 4_2:+71360238 Msa0620080:CDS
CAGCATAAAACACATGTCTG+GGG 0.712096 4_2:+71357773 Msa0620080:exon
AGGCCTCTATAGAAAGCCCG+GGG 0.730497 4_2:-71360281 None:intergenic
TGGGTTTGGAGAAACCCACG+TGG 0.761132 4_2:-71357809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTAAAAATAAAATA+AGG - chr4_2:71357417-71357436 None:intergenic 0.0%
!!! TACATATTTTATAACAAATA+GGG + chr4_2:71358453-71358472 Msa0620080:intron 10.0%
!! AATTTATCAATAAGAATATA+AGG - chr4_2:71360463-71360482 None:intergenic 10.0%
!!! TAAAAGGTTAAATTTTATTT+TGG - chr4_2:71361079-71361098 None:intergenic 10.0%
!!! CCATTTTTTAAAATTATAAC+CGG - chr4_2:71358342-71358361 None:intergenic 15.0%
!!! CTACATATTTTATAACAAAT+AGG + chr4_2:71358452-71358471 Msa0620080:intron 15.0%
!! TTAATAAAAACAAGAGAAAA+CGG - chr4_2:71359018-71359037 None:intergenic 15.0%
!! ATATATATGAGTTATAACTA+TGG - chr4_2:71359212-71359231 None:intergenic 15.0%
!!! ATGTTGATATATATTTTCAA+GGG - chr4_2:71359745-71359764 None:intergenic 15.0%
!!! AATGTTGATATATATTTTCA+AGG - chr4_2:71359746-71359765 None:intergenic 15.0%
!! TTGAAAATATATATCAACAT+TGG + chr4_2:71359745-71359764 Msa0620080:CDS 15.0%
!! TGAAAATATATATCAACATT+GGG + chr4_2:71359746-71359765 Msa0620080:CDS 15.0%
!! TACATTGTATAAATTCTAAA+AGG - chr4_2:71361095-71361114 None:intergenic 15.0%
!! TCTATATATATCAAGTTATT+AGG + chr4_2:71361556-71361575 Msa0620080:three_prime_UTR 15.0%
!! TATCATAAATATATACAGAT+TGG + chr4_2:71361639-71361658 Msa0620080:three_prime_UTR 15.0%
!! TGAATTGAAAAATAAGTCAA+AGG - chr4_2:71357579-71357598 None:intergenic 20.0%
!!! TATTTTTTTTTCTTCACTTG+CGG + chr4_2:71357616-71357635 Msa0620080:intron 20.0%
!!! TTGATTATCATGATTTTAGA+CGG + chr4_2:71358105-71358124 Msa0620080:CDS 20.0%
!!! CCGGTTATAATTTTAAAAAA+TGG + chr4_2:71358339-71358358 Msa0620080:intron 20.0%
!!! ATATTTTATAACAAATAGGG+AGG + chr4_2:71358456-71358475 Msa0620080:intron 20.0%
!! GCTATAGTAAACATTAATAT+TGG + chr4_2:71358520-71358539 Msa0620080:intron 20.0%
!! TAGTAAACATTAATATTGGT+TGG + chr4_2:71358524-71358543 Msa0620080:intron 20.0%
!!! AGTAAACATTAATATTGGTT+GGG + chr4_2:71358525-71358544 Msa0620080:intron 20.0%
!! AACATACTAACATCAAAAAA+AGG - chr4_2:71358591-71358610 None:intergenic 20.0%
!! GCTTATAGAAAAAATTTCAA+AGG + chr4_2:71359330-71359349 Msa0620080:intron 20.0%
!! AATAACTCTATGAATTTGTA+TGG + chr4_2:71359362-71359381 Msa0620080:intron 20.0%
!! GGCATTATTATTTATATACT+AGG + chr4_2:71359497-71359516 Msa0620080:intron 20.0%
!! ATTTATATACTAGGTCTTTA+AGG + chr4_2:71359506-71359525 Msa0620080:intron 20.0%
!! GTCAGATATAATATATTTCT+TGG - chr4_2:71360381-71360400 None:intergenic 20.0%
!! AAATATATTATATCTGACCA+TGG + chr4_2:71360383-71360402 Msa0620080:CDS 20.0%
!!! ATATGTCCTTTAGTTATTTT+AGG + chr4_2:71360745-71360764 Msa0620080:intron 20.0%
!! AACTAAAAGTTTGAGAAATT+AGG + chr4_2:71361524-71361543 Msa0620080:three_prime_UTR 20.0%
!! TAATATAAGACACTAATAGT+GGG - chr4_2:71361608-71361627 None:intergenic 20.0%
!! TTAATATAAGACACTAATAG+TGG - chr4_2:71361609-71361628 None:intergenic 20.0%
! AAAATGAGAGTAATTAAGAG+AGG - chr4_2:71357352-71357371 None:intergenic 25.0%
!! TTACTCTCATTTTCTTTCTA+CGG + chr4_2:71357359-71357378 Msa0620080:five_prime_UTR 25.0%
! AATTTAAGAGAAGAAGAAGA+AGG - chr4_2:71357490-71357509 None:intergenic 25.0%
! TTAGCATATTTATATTCAGG+TGG - chr4_2:71358044-71358063 None:intergenic 25.0%
! ACCTGAATATAAATATGCTA+AGG + chr4_2:71358043-71358062 Msa0620080:CDS 25.0%
! TCCTTAGCATATTTATATTC+AGG - chr4_2:71358047-71358066 None:intergenic 25.0%
! AAGTGACATAATTAACAAGA+GGG - chr4_2:71358254-71358273 None:intergenic 25.0%
! TAAGTGACATAATTAACAAG+AGG - chr4_2:71358255-71358274 None:intergenic 25.0%
!! GTAAACATTAATATTGGTTG+GGG + chr4_2:71358526-71358545 Msa0620080:intron 25.0%
!! TAAACATTAATATTGGTTGG+GGG + chr4_2:71358527-71358546 Msa0620080:intron 25.0%
!! TTTTGATGTTAGTATGTTGT+TGG + chr4_2:71358593-71358612 Msa0620080:intron 25.0%
! AACTCAATCTCATTTAGAAA+AGG - chr4_2:71358784-71358803 None:intergenic 25.0%
!! AGATATTTTCCCATTTTAGA+AGG - chr4_2:71358818-71358837 None:intergenic 25.0%
! AAATGGGAAAATATCTCATA+TGG + chr4_2:71358822-71358841 Msa0620080:intron 25.0%
! ACAATGAGAAAATGAAACAA+GGG - chr4_2:71359564-71359583 None:intergenic 25.0%
! TACAATGAGAAAATGAAACA+AGG - chr4_2:71359565-71359584 None:intergenic 25.0%
!! CATGTTGATAAGGATAATAA+TGG + chr4_2:71359663-71359682 Msa0620080:CDS 25.0%
!!! GAATTATCACTTTTGAAGAA+TGG + chr4_2:71359685-71359704 Msa0620080:CDS 25.0%
! TTCATAAGCATAAAACTTGA+TGG - chr4_2:71360048-71360067 None:intergenic 25.0%
! GAAATGCTGAAAAATGTAAT+TGG + chr4_2:71360065-71360084 Msa0620080:CDS 25.0%
! TTTCTTGGATATATCTTTCA+AGG - chr4_2:71360366-71360385 None:intergenic 25.0%
!! AAGAAGAAAAGAGCATAAAA+AGG - chr4_2:71360506-71360525 None:intergenic 25.0%
!!! CTTGATAGCTAGTTTTATAA+TGG + chr4_2:71360709-71360728 Msa0620080:intron 25.0%
! AAAAAAACTTAAGGACCAAA+GGG - chr4_2:71360774-71360793 None:intergenic 25.0%
! AAAAAAAACTTAAGGACCAA+AGG - chr4_2:71360775-71360794 None:intergenic 25.0%
! AGTGGAACAAAAAAAACTTA+AGG - chr4_2:71360783-71360802 None:intergenic 25.0%
!!! AAGTTTTTTTTGTTCCACTT+TGG + chr4_2:71360784-71360803 Msa0620080:intron 25.0%
! GTCTAACATTCGTAAATTAA+GGG - chr4_2:71360811-71360830 None:intergenic 25.0%
! TGTCTAACATTCGTAAATTA+AGG - chr4_2:71360812-71360831 None:intergenic 25.0%
!! TTTACGAATGTTAGACATTT+TGG + chr4_2:71360815-71360834 Msa0620080:intron 25.0%
! CAAATGAAAAACTGAAAGAA+AGG + chr4_2:71360963-71360982 Msa0620080:intron 25.0%
! AATCTGTAACATTTGTAACT+TGG + chr4_2:71360991-71361010 Msa0620080:intron 25.0%
! ATCTGTAACATTTGTAACTT+GGG + chr4_2:71360992-71361011 Msa0620080:intron 25.0%
!!! AAGTTTTTTTCGTTCCATTT+TGG - chr4_2:71361019-71361038 None:intergenic 25.0%
! AATGGAACGAAAAAAACTTA+AGG + chr4_2:71361020-71361039 Msa0620080:intron 25.0%
! ATGGAACGAAAAAAACTTAA+GGG + chr4_2:71361021-71361040 Msa0620080:intron 25.0%
!! GCTGATTTCAAATGTTATAT+AGG + chr4_2:71361367-71361386 Msa0620080:three_prime_UTR 25.0%
GAAAAAATGTGGGATTAGAT+GGG - chr4_2:71357667-71357686 None:intergenic 30.0%
AGAAAAAATGTGGGATTAGA+TGG - chr4_2:71357668-71357687 None:intergenic 30.0%
TCTGAAGAGAGAAAAAATGT+GGG - chr4_2:71357677-71357696 None:intergenic 30.0%
ATCTGAAGAGAGAAAAAATG+TGG - chr4_2:71357678-71357697 None:intergenic 30.0%
AGCATTTGAATTTGAAGAAG+TGG - chr4_2:71357711-71357730 None:intergenic 30.0%
TTCAAATTCAAATGCTTCAC+TGG + chr4_2:71357715-71357734 Msa0620080:five_prime_UTR 30.0%
TCAAATTCAAATGCTTCACT+GGG + chr4_2:71357716-71357735 Msa0620080:five_prime_UTR 30.0%
ATGATCCATTGAAATTGAAC+CGG - chr4_2:71357886-71357905 None:intergenic 30.0%
TTCAATGGATCATGTTCTAT+TGG + chr4_2:71357893-71357912 Msa0620080:CDS 30.0%
TTCTTTGATGCTACTAACAA+AGG + chr4_2:71357969-71357988 Msa0620080:CDS 30.0%
TCTTTGATGCTACTAACAAA+GGG + chr4_2:71357970-71357989 Msa0620080:CDS 30.0%
! TCATGATTTTAGACGGTATA+TGG + chr4_2:71358112-71358131 Msa0620080:CDS 30.0%
GCTATTGATGTTGAACATAA+TGG + chr4_2:71358170-71358189 Msa0620080:CDS 30.0%
TATTCTTCCTGAAGAACTTT+GGG + chr4_2:71358196-71358215 Msa0620080:CDS 30.0%
AGTGACATAATTAACAAGAG+GGG - chr4_2:71358253-71358272 None:intergenic 30.0%
! AAACATTAATATTGGTTGGG+GGG + chr4_2:71358528-71358547 Msa0620080:intron 30.0%
AAAAAGGAATAAGCATGCAA+TGG - chr4_2:71358575-71358594 None:intergenic 30.0%
AATGAGATTGAGTTTCACAA+AGG + chr4_2:71358790-71358809 Msa0620080:intron 30.0%
!! ACAAAGGTTCCTTCTAAAAT+GGG + chr4_2:71358806-71358825 Msa0620080:intron 30.0%
GTACGAAACAATACAACAAT+CGG + chr4_2:71358864-71358883 Msa0620080:intron 30.0%
ACATGAGTTTCTCATCTTAT+GGG - chr4_2:71358898-71358917 None:intergenic 30.0%
TACATGAGTTTCTCATCTTA+TGG - chr4_2:71358899-71358918 None:intergenic 30.0%
AATTGAAACAGTGATCCAAT+CGG + chr4_2:71358933-71358952 Msa0620080:intron 30.0%
!!! TTCCTTGTTTTTTACTGAAC+CGG - chr4_2:71358961-71358980 None:intergenic 30.0%
AAACAAGAGAAAACGGATAT+AGG - chr4_2:71359011-71359030 None:intergenic 30.0%
TTGAAAATCGGTCAAAACTT+TGG - chr4_2:71359120-71359139 None:intergenic 30.0%
AAAAGAAACATGCATTCACA+AGG - chr4_2:71359296-71359315 None:intergenic 30.0%
TATGAATTTGTATGGTGTGT+GGG + chr4_2:71359370-71359389 Msa0620080:intron 30.0%
ATCAAAGATTGAAGTCGAAT+CGG - chr4_2:71359414-71359433 None:intergenic 30.0%
! TATATACTAGGTCTTTAAGG+TGG + chr4_2:71359509-71359528 Msa0620080:intron 30.0%
TGGAAAAATCTTCCACAAAA+GGG - chr4_2:71359539-71359558 None:intergenic 30.0%
ATGGAAAAATCTTCCACAAA+AGG - chr4_2:71359540-71359559 None:intergenic 30.0%
ATATATATCAACATTGGGAG+AGG + chr4_2:71359751-71359770 Msa0620080:CDS 30.0%
TATATATCAACATTGGGAGA+GGG + chr4_2:71359752-71359771 Msa0620080:CDS 30.0%
AATGTAATTGGAGATAGTCA+AGG + chr4_2:71360077-71360096 Msa0620080:CDS 30.0%
ATGTAATTGGAGATAGTCAA+GGG + chr4_2:71360078-71360097 Msa0620080:CDS 30.0%
!!! CTAGTTTTGATAAGATCCAA+TGG - chr4_2:71360182-71360201 None:intergenic 30.0%
CATTGGATCTTATCAAAACT+AGG + chr4_2:71360180-71360199 Msa0620080:CDS 30.0%
GATCCATATATCCTTTGTAA+GGG - chr4_2:71360252-71360271 None:intergenic 30.0%
TAAGTTAAAGAGATCAAGAG+TGG - chr4_2:71360422-71360441 None:intergenic 30.0%
CCAGAGAAAAACATTACTTA+TGG - chr4_2:71360638-71360657 None:intergenic 30.0%
! CCATAAGTAATGTTTTTCTC+TGG + chr4_2:71360635-71360654 Msa0620080:intron 30.0%
!! ACACTCATTATTTGCTTTTG+GGG - chr4_2:71360669-71360688 None:intergenic 30.0%
!! CACACTCATTATTTGCTTTT+GGG - chr4_2:71360670-71360689 None:intergenic 30.0%
CAAAAGCAAATAATGAGTGT+GGG + chr4_2:71360669-71360688 Msa0620080:intron 30.0%
GGGAAACCTAAAATAACTAA+AGG - chr4_2:71360754-71360773 None:intergenic 30.0%
!!! AGTTATTTTAGGTTTCCCTT+TGG + chr4_2:71360756-71360775 Msa0620080:intron 30.0%
AAGAAGGAAACACAAGAAAT+GGG + chr4_2:71360925-71360944 Msa0620080:intron 30.0%
!!! GTTGTTTTCAGGTTTTACTT+TGG - chr4_2:71361048-71361067 None:intergenic 30.0%
TAAAACCTGAAAACAACTCA+AGG + chr4_2:71361051-71361070 Msa0620080:intron 30.0%
!!! TGTTTTTTGGAAAACCCTTA+AGG + chr4_2:71361202-71361221 Msa0620080:CDS 30.0%
! TAACATTTGAAATCAGCTCT+GGG - chr4_2:71361364-71361383 None:intergenic 30.0%
! ATAACATTTGAAATCAGCTC+TGG - chr4_2:71361365-71361384 None:intergenic 30.0%
AGGACATCTTAAAATGTTGA+TGG + chr4_2:71361387-71361406 Msa0620080:three_prime_UTR 30.0%
TTACAAGTAGTGATTCTTCA+AGG + chr4_2:71361449-71361468 Msa0620080:three_prime_UTR 30.0%
!!! TTTTAGTTCAGATAAGCAAG+GGG - chr4_2:71361512-71361531 None:intergenic 30.0%
!!! CTTTTAGTTCAGATAAGCAA+GGG - chr4_2:71361513-71361532 None:intergenic 30.0%
!!! ACTTTTAGTTCAGATAAGCA+AGG - chr4_2:71361514-71361533 None:intergenic 30.0%
GGGTAAAGTACATATCAAAA+TGG - chr4_2:71361588-71361607 None:intergenic 30.0%
!!! TTTTTTTTCTTCACTTGCGG+CGG + chr4_2:71357619-71357638 Msa0620080:intron 35.0%
TGTTCGGGGTTTCAAAATTT+GGG - chr4_2:71357753-71357772 None:intergenic 35.0%
! ATGTGTTTTATGCTGTGTTC+GGG - chr4_2:71357768-71357787 None:intergenic 35.0%
! CATGTGTTTTATGCTGTGTT+CGG - chr4_2:71357769-71357788 None:intergenic 35.0%
ACAGCATAAAACACATGTCT+GGG + chr4_2:71357772-71357791 Msa0620080:exon 35.0%
AAAACCCGGTTCAATTTCAA+TGG + chr4_2:71357878-71357897 Msa0620080:CDS 35.0%
TGATCCATTGAAATTGAACC+GGG - chr4_2:71357885-71357904 None:intergenic 35.0%
AAGAAAGGGATGTTCGTATT+CGG + chr4_2:71357934-71357953 Msa0620080:CDS 35.0%
!! TGCTACTAACAAAGGGTATT+TGG + chr4_2:71357977-71357996 Msa0620080:CDS 35.0%
ATTATGCTCACATTGAAGCA+GGG + chr4_2:71358000-71358019 Msa0620080:CDS 35.0%
ATTTGTGATGCTGATAGAGA+TGG + chr4_2:71358077-71358096 Msa0620080:CDS 35.0%
TTTGTGATGCTGATAGAGAT+GGG + chr4_2:71358078-71358097 Msa0620080:CDS 35.0%
GTATTCTTCCTGAAGAACTT+TGG + chr4_2:71358195-71358214 Msa0620080:CDS 35.0%
GTGACATAATTAACAAGAGG+GGG - chr4_2:71358252-71358271 None:intergenic 35.0%
! GTTAGTATGTTGTTGGTTGT+TGG + chr4_2:71358600-71358619 Msa0620080:intron 35.0%
!!! CTTGTTACTTTTCCTTGAGT+GGG + chr4_2:71358623-71358642 Msa0620080:intron 35.0%
AATCTAAGTTTCTTCGAGCA+AGG - chr4_2:71358726-71358745 None:intergenic 35.0%
! CACAAAGGTTCCTTCTAAAA+TGG + chr4_2:71358805-71358824 Msa0620080:intron 35.0%
TGGGAAAATATCTCATATGG+TGG + chr4_2:71358825-71358844 Msa0620080:intron 35.0%
CATGAGTTTCTCATCTTATG+GGG - chr4_2:71358897-71358916 None:intergenic 35.0%
CTGGATCAATGCTTGAAAAT+CGG - chr4_2:71359132-71359151 None:intergenic 35.0%
GCTTATTTGTGTCAAAGATG+CGG - chr4_2:71359157-71359176 None:intergenic 35.0%
TCTGTAGTCATTCATAGCTT+TGG + chr4_2:71359266-71359285 Msa0620080:intron 35.0%
! GTGAATGCATGTTTCTTTTG+AGG + chr4_2:71359297-71359316 Msa0620080:intron 35.0%
CTATGAATTTGTATGGTGTG+TGG + chr4_2:71359369-71359388 Msa0620080:intron 35.0%
GATTCGACTTCAATCTTTGA+TGG + chr4_2:71359413-71359432 Msa0620080:intron 35.0%
TACTTGCTTACTTTATCGTG+TGG + chr4_2:71359461-71359480 Msa0620080:intron 35.0%
ACTTGCTTACTTTATCGTGT+GGG + chr4_2:71359462-71359481 Msa0620080:intron 35.0%
GAGAAAATGAAACAAGGGAA+TGG - chr4_2:71359559-71359578 None:intergenic 35.0%
CTTTGTTGAGCATGTTGATA+AGG + chr4_2:71359653-71359672 Msa0620080:CDS 35.0%
! AGGAGCAGATATTTTATTGC+AGG + chr4_2:71359837-71359856 Msa0620080:CDS 35.0%
! GGAGCAGATATTTTATTGCA+GGG + chr4_2:71359838-71359857 Msa0620080:CDS 35.0%
! GAGCAGATATTTTATTGCAG+GGG + chr4_2:71359839-71359858 Msa0620080:CDS 35.0%
! AGCAGATATTTTATTGCAGG+GGG + chr4_2:71359840-71359859 Msa0620080:CDS 35.0%
CTTACAAATTCAGACTGGAA+AGG + chr4_2:71359920-71359939 Msa0620080:CDS 35.0%
!! TAATGGGTTGAATGTTGTGA+AGG + chr4_2:71360007-71360026 Msa0620080:CDS 35.0%
ATAGATAGCAATCTGTGCAA+TGG - chr4_2:71360159-71360178 None:intergenic 35.0%
ACAGATTGCTATCTATCCAT+TGG + chr4_2:71360163-71360182 Msa0620080:CDS 35.0%
GAACCCTTACAAAGGATATA+TGG + chr4_2:71360246-71360265 Msa0620080:CDS 35.0%
GGATCCATATATCCTTTGTA+AGG - chr4_2:71360253-71360272 None:intergenic 35.0%
AAAGGATATATGGATCCAAG+AGG + chr4_2:71360256-71360275 Msa0620080:CDS 35.0%
AAGGATATATGGATCCAAGA+GGG + chr4_2:71360257-71360276 Msa0620080:CDS 35.0%
GTGGCAAAAATATCATACCA+TGG - chr4_2:71360403-71360422 None:intergenic 35.0%
! CTTTTCTTCTTCATAGAACC+TGG + chr4_2:71360515-71360534 Msa0620080:intron 35.0%
! CCACACTCATTATTTGCTTT+TGG - chr4_2:71360671-71360690 None:intergenic 35.0%
CCAAAAGCAAATAATGAGTG+TGG + chr4_2:71360668-71360687 Msa0620080:intron 35.0%
TAATGAGTGTGGGATGATAT+CGG + chr4_2:71360679-71360698 Msa0620080:intron 35.0%
!! ACATTTGACGGACTCAAATA+TGG - chr4_2:71360858-71360877 None:intergenic 35.0%
ATTTGAGTCCGTCAAATGTT+TGG + chr4_2:71360859-71360878 Msa0620080:intron 35.0%
TTGTAGTGCCAAACATTTGA+CGG - chr4_2:71360870-71360889 None:intergenic 35.0%
!! GGCACTACAATTTGTTGATT+AGG + chr4_2:71360880-71360899 Msa0620080:intron 35.0%
GAAGAAGGAAACACAAGAAA+TGG + chr4_2:71360924-71360943 Msa0620080:intron 35.0%
TTTGTAACTTGGGACCAAAA+TGG + chr4_2:71361002-71361021 Msa0620080:intron 35.0%
AACACTTCTAGTGCTTACAA+GGG + chr4_2:71361170-71361189 Msa0620080:CDS 35.0%
!!! AGGGAATGTCTGATGTTTTT+TGG + chr4_2:71361189-71361208 Msa0620080:CDS 35.0%
ATGTAAGTAATACTTGCAGC+CGG - chr4_2:71361284-71361303 None:intergenic 35.0%
GAGAGATTAACTAATCCTGT+AGG + chr4_2:71361421-71361440 Msa0620080:three_prime_UTR 35.0%
AAGTAGTGATTCTTCAAGGA+GGG + chr4_2:71361453-71361472 Msa0620080:three_prime_UTR 35.0%
AATATATACAGATTGGCGCA+TGG + chr4_2:71361646-71361665 Msa0620080:three_prime_UTR 35.0%
!! GTAATGGTGGATAGAATTGA+TGG + chr4_2:71361673-71361692 Msa0620080:three_prime_UTR 35.0%
GCGTTACGTTATGTTTGATG+CGG - chr4_2:71357390-71357409 None:intergenic 40.0%
ACCACCTCTCTTCAAATTTC+AGG + chr4_2:71357462-71357481 Msa0620080:five_prime_UTR 40.0%
ACCTGAAATTTGAAGAGAGG+TGG - chr4_2:71357466-71357485 None:intergenic 40.0%
GGTACCTGAAATTTGAAGAG+AGG - chr4_2:71357469-71357488 None:intergenic 40.0%
GTGTTCGGGGTTTCAAAATT+TGG - chr4_2:71357754-71357773 None:intergenic 40.0%
! TGTGTTTTATGCTGTGTTCG+GGG - chr4_2:71357767-71357786 None:intergenic 40.0%
CACAGCATAAAACACATGTC+TGG + chr4_2:71357771-71357790 Msa0620080:exon 40.0%
CAGCATAAAACACATGTCTG+GGG + chr4_2:71357773-71357792 Msa0620080:exon 40.0%
!!! TTGAACCGGGTTTTTTACCA+CGG - chr4_2:71357872-71357891 None:intergenic 40.0%
GATTATGCTCACATTGAAGC+AGG + chr4_2:71357999-71358018 Msa0620080:CDS 40.0%
ACATGTGTCCATGTCTATCA+CGG - chr4_2:71358395-71358414 None:intergenic 40.0%
!!! GCTTGTTACTTTTCCTTGAG+TGG + chr4_2:71358622-71358641 Msa0620080:intron 40.0%
AACATTTCTTGTCCCACTCA+AGG - chr4_2:71358638-71358657 None:intergenic 40.0%
ACTTGCATTGCCTATGATTG+TGG + chr4_2:71358685-71358704 Msa0620080:intron 40.0%
!! TCATATGGTGGATTGATGCT+TGG + chr4_2:71358837-71358856 Msa0620080:intron 40.0%
!! TGCCGGTTCAGTAAAAAACA+AGG + chr4_2:71358956-71358975 Msa0620080:intron 40.0%
GACCATGAACTTCTACTTGA+AGG + chr4_2:71359076-71359095 Msa0620080:intron 40.0%
CACCTTCAAGTAGAAGTTCA+TGG - chr4_2:71359081-71359100 None:intergenic 40.0%
CATGAACTTCTACTTGAAGG+TGG + chr4_2:71359079-71359098 Msa0620080:intron 40.0%
TCGACTTCAATCTTTGATGG+TGG + chr4_2:71359416-71359435 Msa0620080:intron 40.0%
TCGTGTGGGATAATATGTTC+AGG + chr4_2:71359476-71359495 Msa0620080:intron 40.0%
! TAAGGTGGTATTCCCTTTTG+TGG + chr4_2:71359524-71359543 Msa0620080:intron 40.0%
TGCAGGGATTGAAATTGATG+AGG + chr4_2:71359617-71359636 Msa0620080:CDS 40.0%
CTTGTTCTCCAATGTCTACA+AGG - chr4_2:71359782-71359801 None:intergenic 40.0%
! GTGGTCTTACAAATTCAGAC+TGG + chr4_2:71359915-71359934 Msa0620080:CDS 40.0%
CTTCATTACTGCTGGCATAA+TGG - chr4_2:71359949-71359968 None:intergenic 40.0%
TGCCAGCAGTAATGAAGATA+TGG + chr4_2:71359952-71359971 Msa0620080:CDS 40.0%
TGCCATATCTTCATTACTGC+TGG - chr4_2:71359957-71359976 None:intergenic 40.0%
ATGAAGATATGGCAACGAGA+CGG + chr4_2:71359963-71359982 Msa0620080:CDS 40.0%
! GGTTTATTAGGGTTTTTCCG+AGG + chr4_2:71359984-71360003 Msa0620080:CDS 40.0%
! TTAGGGTTTTTCCGAGGTAA+TGG + chr4_2:71359990-71360009 Msa0620080:CDS 40.0%
! TAGGGTTTTTCCGAGGTAAT+GGG + chr4_2:71359991-71360010 Msa0620080:CDS 40.0%
CAACATTCAACCCATTACCT+CGG - chr4_2:71360004-71360023 None:intergenic 40.0%
CAAGGGAACAAGTCAGATAT+TGG + chr4_2:71360095-71360114 Msa0620080:CDS 40.0%
AAGTCAGATATTGGTACTGC+CGG + chr4_2:71360104-71360123 Msa0620080:CDS 40.0%
TTTGTAAGGGTTCCTAGGTT+CGG - chr4_2:71360239-71360258 None:intergenic 40.0%
TATCCTTTGTAAGGGTTCCT+AGG - chr4_2:71360244-71360263 None:intergenic 40.0%
TACCAAGAAGAGATGGAACA+AGG - chr4_2:71360304-71360323 None:intergenic 40.0%
GGAATCATACCAAGAAGAGA+TGG - chr4_2:71360311-71360330 None:intergenic 40.0%
CTTGGTATGATTCCTTATGC+AGG + chr4_2:71360317-71360336 Msa0620080:CDS 40.0%
CTCTAGTACAACTTGGATGT+GGG + chr4_2:71360540-71360559 Msa0620080:CDS 40.0%
CGTAAATTAAGGGACCAAAG+TGG - chr4_2:71360801-71360820 None:intergenic 40.0%
TCCTTCTTCTTCTTCTTGCT+GGG - chr4_2:71360913-71360932 None:intergenic 40.0%
TTCCTTCTTCTTCTTCTTGC+TGG - chr4_2:71360914-71360933 None:intergenic 40.0%
!! TGGATCCTTGAGTTGTTTTC+AGG - chr4_2:71361059-71361078 None:intergenic 40.0%
ATTACATTGCCATGCTTCTC+AGG + chr4_2:71361129-71361148 Msa0620080:intron 40.0%
!! TAAGCACTAGAAGTGTTGGT+AGG - chr4_2:71361167-71361186 None:intergenic 40.0%
! CTTGTAAGCACTAGAAGTGT+TGG - chr4_2:71361171-71361190 None:intergenic 40.0%
CAACACTTCTAGTGCTTACA+AGG + chr4_2:71361169-71361188 Msa0620080:CDS 40.0%
AAATCTCCTCAAAGTTGTGC+CGG + chr4_2:71361262-71361281 Msa0620080:CDS 40.0%
GGCTGCAAGTATTACTTACA+TGG + chr4_2:71361283-71361302 Msa0620080:CDS 40.0%
CTACTTGTAATAGTGCCTAC+AGG - chr4_2:71361439-71361458 None:intergenic 40.0%
CAAGTAGTGATTCTTCAAGG+AGG + chr4_2:71361452-71361471 Msa0620080:three_prime_UTR 40.0%
! TGATGGACGACATTCTTATG+AGG + chr4_2:71361690-71361709 Msa0620080:three_prime_UTR 40.0%
! TTGAAGAGAGGTGGTGATGA+CGG - chr4_2:71357457-71357476 None:intergenic 45.0%
CTCCAAACCCAAATCATCTC+CGG + chr4_2:71357821-71357840 Msa0620080:CDS 45.0%
!!! TTTTTTACCACGGCCGTGAT+CGG - chr4_2:71357862-71357881 None:intergenic 45.0%
!! ATTGGCTTTGCGTGAGACTA+AGG + chr4_2:71357911-71357930 Msa0620080:CDS 45.0%
TGCGTGAGACTAAGGAAGAA+AGG + chr4_2:71357919-71357938 Msa0620080:CDS 45.0%
GCGTGAGACTAAGGAAGAAA+GGG + chr4_2:71357920-71357939 Msa0620080:CDS 45.0%
! AGAGCATCCCAAAGTTCTTC+AGG - chr4_2:71358206-71358225 None:intergenic 45.0%
!! ACTTTGGGATGCTCTTGTCA+AGG + chr4_2:71358211-71358230 Msa0620080:CDS 45.0%
GACCTATGAAGCTCATACAC+CGG + chr4_2:71358300-71358319 Msa0620080:intron 45.0%
! CTTCTGATTGAAGGCGTGTT+TGG - chr4_2:71358424-71358443 None:intergenic 45.0%
! CATTAATATTGGTTGGGGGG+TGG + chr4_2:71358531-71358550 Msa0620080:intron 45.0%
GTTACAGCAGCCACAATCAT+AGG - chr4_2:71358698-71358717 None:intergenic 45.0%
GTTTCTCATCTTATGGGGAG+AGG - chr4_2:71358892-71358911 None:intergenic 45.0%
AAGTCACTGCCTCTTCTGTA+CGG + chr4_2:71359054-71359073 Msa0620080:intron 45.0%
! TTGAAGGTGGTGACGTTGAT+CGG + chr4_2:71359092-71359111 Msa0620080:intron 45.0%
CAAATGTTGAGAGACTGCAG+AGG + chr4_2:71359242-71359261 Msa0620080:intron 45.0%
!! TTTTCAAGGGTTGCTTCGTG+AGG - chr4_2:71359732-71359751 None:intergenic 45.0%
AGGGTATGCCTTGTAGACAT+TGG + chr4_2:71359771-71359790 Msa0620080:CDS 45.0%
GAACAAGCTGTCATTCCTGA+AGG + chr4_2:71359795-71359814 Msa0620080:CDS 45.0%
TTTATTGCAGGGGGAATAGC+AGG + chr4_2:71359849-71359868 Msa0620080:CDS 45.0%
TGCTCCTCTTGATCGTCTAA+AGG + chr4_2:71359893-71359912 Msa0620080:CDS 45.0%
TCCTCTTGATCGTCTAAAGG+TGG + chr4_2:71359896-71359915 Msa0620080:CDS 45.0%
ACCACCTTTAGACGATCAAG+AGG - chr4_2:71359900-71359919 None:intergenic 45.0%
TGGCAACGAGACGGTTTATT+AGG + chr4_2:71359972-71359991 Msa0620080:CDS 45.0%
GGCAACGAGACGGTTTATTA+GGG + chr4_2:71359973-71359992 Msa0620080:CDS 45.0%
!! TAAAACTTGATGGCGCTCTC+AGG - chr4_2:71360038-71360057 None:intergenic 45.0%
! AAGACTTTTTGCAGGTGGCA+TGG + chr4_2:71360127-71360146 Msa0620080:CDS 45.0%
TTACAGACATGTGCGTCTGA+AGG + chr4_2:71360203-71360222 Msa0620080:CDS 45.0%
GAACCTAGGAACCCTTACAA+AGG + chr4_2:71360238-71360257 Msa0620080:CDS 45.0%
GTGAGATCAATGCCTGCATA+AGG - chr4_2:71360332-71360351 None:intergenic 45.0%
CCACATCCAAGTTGTACTAG+AGG - chr4_2:71360542-71360561 None:intergenic 45.0%
CCTCTAGTACAACTTGGATG+TGG + chr4_2:71360539-71360558 Msa0620080:CDS 45.0%
ACTTGGATGTGGGACAGTTT+CGG + chr4_2:71360550-71360569 Msa0620080:CDS 45.0%
TACTTGTGTCTATCCACTGC+AGG + chr4_2:71360586-71360605 Msa0620080:CDS 45.0%
CTTGTACGAATAACCTGCAG+TGG - chr4_2:71360602-71360621 None:intergenic 45.0%
CACTGCAGGTTATTCGTACA+AGG + chr4_2:71360600-71360619 Msa0620080:CDS 45.0%
ACCCAGCAAGAAGAAGAAGA+AGG + chr4_2:71360909-71360928 Msa0620080:intron 45.0%
TGGAAAACCCTTAAGGACGA+AGG + chr4_2:71361209-71361228 Msa0620080:CDS 45.0%
TCGAAAGCCTTCGTCCTTAA+GGG - chr4_2:71361219-71361238 None:intergenic 45.0%
TTAAGGACGAAGGCTTTCGA+GGG + chr4_2:71361219-71361238 Msa0620080:CDS 45.0%
! GGCACAACTTTGAGGAGATT+TGG - chr4_2:71361263-71361282 None:intergenic 45.0%
!! ATTGGCGCATGGCTTTGTAA+TGG + chr4_2:71361657-71361676 Msa0620080:three_prime_UTR 45.0%
GAAGTCGCCGGAGATGATTT+GGG - chr4_2:71357831-71357850 None:intergenic 50.0%
AGAAGTCGCCGGAGATGATT+TGG - chr4_2:71357832-71357851 None:intergenic 50.0%
GTCCGGTGTATGAGCTTCAT+AGG - chr4_2:71358305-71358324 None:intergenic 50.0%
GTCACTGTCCGTGATAGACA+TGG + chr4_2:71358384-71358403 Msa0620080:intron 50.0%
! GCGCTGACACTTCTGATTGA+AGG - chr4_2:71358433-71358452 None:intergenic 50.0%
AACAGTGATCCAATCGGTGC+CGG + chr4_2:71358939-71358958 Msa0620080:intron 50.0%
!! TTTACTGAACCGGCACCGAT+TGG - chr4_2:71358951-71358970 None:intergenic 50.0%
GTTCATGGTCCGTACAGAAG+AGG - chr4_2:71359066-71359085 None:intergenic 50.0%
CTAGAAATGCGCTGCTTGAG+AGG + chr4_2:71359176-71359195 Msa0620080:intron 50.0%
! TGCAGCATCAAAGCTGGCTT+TGG - chr4_2:71359601-71359620 None:intergenic 50.0%
! AAAGCCAGCTTTGATGCTGC+AGG + chr4_2:71359600-71359619 Msa0620080:CDS 50.0%
! AAGCCAGCTTTGATGCTGCA+GGG + chr4_2:71359601-71359620 Msa0620080:CDS 50.0%
AATCCCTGCAGCATCAAAGC+TGG - chr4_2:71359607-71359626 None:intergenic 50.0%
! ACATGCTTGCTGATGCCTTC+AGG - chr4_2:71359813-71359832 None:intergenic 50.0%
! ACTGCCGGAAGACTTTTTGC+AGG + chr4_2:71360119-71360138 Msa0620080:CDS 50.0%
GCCACCTGCAAAAAGTCTTC+CGG - chr4_2:71360126-71360145 None:intergenic 50.0%
ATGTGCGTCTGAAGGTGGAA+AGG + chr4_2:71360211-71360230 Msa0620080:CDS 50.0%
AAGGCCTCTATAGAAAGCCC+GGG - chr4_2:71360285-71360304 None:intergenic 50.0%
CAAGGCCTCTATAGAAAGCC+CGG - chr4_2:71360286-71360305 None:intergenic 50.0%
!! GGCCTTGTTCCATCTCTTCT+TGG + chr4_2:71360299-71360318 Msa0620080:CDS 50.0%
CCAAGTTGTACTAGAGGACC+AGG - chr4_2:71360536-71360555 None:intergenic 50.0%
CCTGGTCCTCTAGTACAACT+TGG + chr4_2:71360533-71360552 Msa0620080:CDS 50.0%
CTTGGATGTGGGACAGTTTC+GGG + chr4_2:71360551-71360570 Msa0620080:CDS 50.0%
!! ACATTTTGGTCCTTCCTGCC+TGG + chr4_2:71360829-71360848 Msa0620080:intron 50.0%
AATATGGAGACCAGGCAGGA+AGG - chr4_2:71360842-71360861 None:intergenic 50.0%
CTCAAATATGGAGACCAGGC+AGG - chr4_2:71360846-71360865 None:intergenic 50.0%
CGGACTCAAATATGGAGACC+AGG - chr4_2:71360850-71360869 None:intergenic 50.0%
CTTCTTCTTCTTGCTGGGTG+AGG - chr4_2:71360908-71360927 None:intergenic 50.0%
CTCGAAAGCCTTCGTCCTTA+AGG - chr4_2:71361220-71361239 None:intergenic 50.0%
CTTAAGGACGAAGGCTTTCG+AGG + chr4_2:71361218-71361237 Msa0620080:CDS 50.0%
AGGCTTTCGAGGGTTCTACA+AGG + chr4_2:71361229-71361248 Msa0620080:CDS 50.0%
GGCTTTCGAGGGTTCTACAA+GGG + chr4_2:71361230-71361249 Msa0620080:CDS 50.0%
! CATGTCTGGGGCCATAGACA+TGG + chr4_2:71357785-71357804 Msa0620080:exon 55.0%
GCCATAGACATGGACCACGT+GGG + chr4_2:71357795-71357814 Msa0620080:CDS 55.0%
ACCCACGTGGTCCATGTCTA+TGG - chr4_2:71357799-71357818 None:intergenic 55.0%
TGGGTTTGGAGAAACCCACG+TGG - chr4_2:71357812-71357831 None:intergenic 55.0%
! CGCCGGAGATGATTTGGGTT+TGG - chr4_2:71357826-71357845 None:intergenic 55.0%
ACTTCTCCGACCACCGATCA+CGG + chr4_2:71357846-71357865 Msa0620080:CDS 55.0%
CACGGCCGTGGTAAAAAACC+CGG + chr4_2:71357864-71357883 Msa0620080:CDS 55.0%
TGGGATGCTCTTGTCAAGGC+TGG + chr4_2:71358215-71358234 Msa0620080:CDS 55.0%
TTGTGTCAAAGATGCGGCGC+TGG - chr4_2:71359151-71359170 None:intergenic 55.0%
TTTGTATGGTGTGTGGGCCG+TGG + chr4_2:71359376-71359395 Msa0620080:intron 55.0%
TTGTATGGTGTGTGGGCCGT+GGG + chr4_2:71359377-71359396 Msa0620080:intron 55.0%
ATCGGCCTTCACAAGTCCCA+CGG - chr4_2:71359396-71359415 None:intergenic 55.0%
GCATCAGCAAGCATGTGCAC+AGG + chr4_2:71359817-71359836 Msa0620080:CDS 55.0%
! GCCGGAAGACTTTTTGCAGG+TGG + chr4_2:71360122-71360141 Msa0620080:CDS 55.0%
! CTTTTTGCAGGTGGCATGGC+TGG + chr4_2:71360131-71360150 Msa0620080:CDS 55.0%
CAGACATGTGCGTCTGAAGG+TGG + chr4_2:71360206-71360225 Msa0620080:CDS 55.0%
TATGGATCCAAGAGGGACCC+CGG + chr4_2:71360264-71360283 Msa0620080:CDS 55.0%
AGGCCTCTATAGAAAGCCCG+GGG - chr4_2:71360284-71360303 None:intergenic 55.0%
TTGCAGCCGGCACAACTTTG+AGG - chr4_2:71361271-71361290 None:intergenic 55.0%
!! GGCGCATGGCTTTGTAATGG+TGG + chr4_2:71361660-71361679 Msa0620080:three_prime_UTR 55.0%
GGCCATAGACATGGACCACG+TGG + chr4_2:71357794-71357813 Msa0620080:CDS 60.0%
TTTACCACGGCCGTGATCGG+TGG - chr4_2:71357859-71357878 None:intergenic 60.0%
CGGTGTGTCAGTGTCGTGTC+CGG - chr4_2:71358322-71358341 None:intergenic 60.0%
CGGACACGACACTGACACAC+CGG + chr4_2:71358320-71358339 Msa0620080:intron 60.0%
GGTGGAAAGGCTCCGAACCT+AGG + chr4_2:71360224-71360243 Msa0620080:CDS 60.0%
ATGGATCCAAGAGGGACCCC+GGG + chr4_2:71360265-71360284 Msa0620080:CDS 60.0%
GGACCCCGGGCTTTCTATAG+AGG + chr4_2:71360278-71360297 Msa0620080:CDS 60.0%
GGGACAGTTTCGGGAGCTCT+TGG + chr4_2:71360560-71360579 Msa0620080:CDS 60.0%
TGCCATGCTTCTCAGGCTGC+AGG + chr4_2:71361136-71361155 Msa0620080:intron 60.0%
TCGGTGGTCGGAGAAGTCGC+CGG - chr4_2:71357843-71357862 None:intergenic 65.0%
GTGGGCCGTGGGACTTGTGA+AGG + chr4_2:71359388-71359407 Msa0620080:intron 65.0%
AGAAAGCCCGGGGTCCCTCT+TGG - chr4_2:71360274-71360293 None:intergenic 65.0%
CGCCTGCAGCCTGAGAAGCA+TGG - chr4_2:71361141-71361160 None:intergenic 65.0%
CCACGGCCGTGATCGGTGGT+CGG - chr4_2:71357855-71357874 None:intergenic 70.0%
CCGACCACCGATCACGGCCG+TGG + chr4_2:71357852-71357871 Msa0620080:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71357343 71361719 71357343 ID=Msa0620080;Name=Msa0620080
chr4_2 mRNA 71357343 71361719 71357343 ID=Msa0620080-mRNA-1;Parent=Msa0620080;Name=Msa0620080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231|0.75|0.8|1|0.75|0.6|5|376|517
chr4_2 exon 71357343 71357483 71357343 ID=Msa0620080-mRNA-1:exon:21048;Parent=Msa0620080-mRNA-1
chr4_2 exon 71357696 71358236 71357696 ID=Msa0620080-mRNA-1:exon:21049;Parent=Msa0620080-mRNA-1
chr4_2 exon 71359586 71360404 71359586 ID=Msa0620080-mRNA-1:exon:21050;Parent=Msa0620080-mRNA-1
chr4_2 exon 71360531 71360621 71360531 ID=Msa0620080-mRNA-1:exon:21051;Parent=Msa0620080-mRNA-1
chr4_2 exon 71361151 71361719 71361151 ID=Msa0620080-mRNA-1:exon:21052;Parent=Msa0620080-mRNA-1
chr4_2 five_prime_UTR 71357343 71357483 71357343 ID=Msa0620080-mRNA-1:five_prime_utr;Parent=Msa0620080-mRNA-1
chr4_2 five_prime_UTR 71357696 71357785 71357696 ID=Msa0620080-mRNA-1:five_prime_utr;Parent=Msa0620080-mRNA-1
chr4_2 CDS 71357786 71358236 71357786 ID=Msa0620080-mRNA-1:cds;Parent=Msa0620080-mRNA-1
chr4_2 CDS 71359586 71360404 71359586 ID=Msa0620080-mRNA-1:cds;Parent=Msa0620080-mRNA-1
chr4_2 CDS 71360531 71360621 71360531 ID=Msa0620080-mRNA-1:cds;Parent=Msa0620080-mRNA-1
chr4_2 CDS 71361151 71361343 71361151 ID=Msa0620080-mRNA-1:cds;Parent=Msa0620080-mRNA-1
chr4_2 three_prime_UTR 71361344 71361719 71361344 ID=Msa0620080-mRNA-1:three_prime_utr;Parent=Msa0620080-mRNA-1
Gene Sequence

>Msa0620080

ATGTCTGGGGCCATAGACATGGACCACGTGGGTTTCTCCAAACCCAAATCATCTCCGGCGACTTCTCCGACCACCGATCACGGCCGTGGTAAAAAACCCGGTTCAATTTCAATGGATCATGTTCTATTGGCTTTGCGTGAGACTAAGGAAGAAAGGGATGTTCGTATTCGGAGTTTATTCAATTTCTTTGATGCTACTAACAAAGGGTATTTGGATTATGCTCACATTGAAGCAGGGTTATCTGCACTTCAGATTCCACCTGAATATAAATATGCTAAGGAGCTTTTTAAGATTTGTGATGCTGATAGAGATGGGAGAATTGATTATCATGATTTTAGACGGTATATGGATGATAAAGAACTTGAACTTTATAGAATTTTTCAAGCTATTGATGTTGAACATAATGGTTGTATTCTTCCTGAAGAACTTTGGGATGCTCTTGTCAAGGCTGTATTTATCATAACCAAAGCCAGCTTTGATGCTGCAGGGATTGAAATTGATGAGGTTGAACTTGCGCGCTTTGTTGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTTCTTTATCCTCACGAAGCAACCCTTGAAAATATATATCAACATTGGGAGAGGGTATGCCTTGTAGACATTGGAGAACAAGCTGTCATTCCTGAAGGCATCAGCAAGCATGTGCACAGGAGCAGATATTTTATTGCAGGGGGAATAGCAGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGGTCTTACAAATTCAGACTGGAAAGGCATCCATTATGCCAGCAGTAATGAAGATATGGCAACGAGACGGTTTATTAGGGTTTTTCCGAGGTAATGGGTTGAATGTTGTGAAGGTTGCACCTGAGAGCGCCATCAAGTTTTATGCTTATGAAATGCTGAAAAATGTAATTGGAGATAGTCAAGGGAACAAGTCAGATATTGGTACTGCCGGAAGACTTTTTGCAGGTGGCATGGCTGGTGCCATTGCACAGATTGCTATCTATCCATTGGATCTTATCAAAACTAGGTTACAGACATGTGCGTCTGAAGGTGGAAAGGCTCCGAACCTAGGAACCCTTACAAAGGATATATGGATCCAAGAGGGACCCCGGGCTTTCTATAGAGGCCTTGTTCCATCTCTTCTTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGACACCTTGAAAGATATATCCAAGAAATATATTATATCTGACCATGAACCTGGTCCTCTAGTACAACTTGGATGTGGGACAGTTTCGGGAGCTCTTGGAGCTACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGGCTGCAGGCGCAACCTACCAACACTTCTAGTGCTTACAAGGGAATGTCTGATGTTTTTTGGAAAACCCTTAAGGACGAAGGCTTTCGAGGGTTCTACAAGGGACTCATTCCAAATCTCCTCAAAGTTGTGCCGGCTGCAAGTATTACTTACATGGTTTATGAAAATATGAAGAAGAATTTAGATCTTGATTAG
Protein sequence

>Msa0620080

MSGAIDMDHVGFSKPKSSPATSPTTDHGRGKKPGSISMDHVLLALRETKEERDVRIRSLFNFFDATNKGYLDYAHIEAGLSALQIPPEYKYAKELFKICDADRDGRIDYHDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAVFIITKASFDAAGIEIDEVELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATLENIYQHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQIQTGKASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDSQGNKSDIGTAGRLFAGGMAGAIAQIAIYPLDLIKTRLQTCASEGGKAPNLGTLTKDIWIQEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDISKKYIISDHEPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQPTNTSSAYKGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKNLDLD*