Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373550 | XP_003601828.1 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373550 | sp|P25861|G3PC_ANTMA | 91.592 | 333 | 28 | 0 | 7 | 339 | 4 | 336 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373550 | G7J2H2 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa0373550 | -0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0011060 | Msa0373550 | -0.831452 | 1.656341e-55 | -8.615850e-47 |
| Msa0011100 | Msa0373550 | -0.823253 | 1.529958e-53 | -8.615850e-47 |
| Msa0011920 | Msa0373550 | -0.803323 | 3.682202e-49 | -8.615850e-47 |
| Msa0012770 | Msa0373550 | 0.801977 | 6.979326e-49 | -8.615850e-47 |
| Msa0021290 | Msa0373550 | 0.808081 | 3.689346e-50 | -8.615850e-47 |
| Msa0021320 | Msa0373550 | 0.801617 | 8.275905e-49 | -8.615850e-47 |
| Msa0030050 | Msa0373550 | 0.800724 | 1.260139e-48 | -8.615850e-47 |
| Msa0037180 | Msa0373550 | 0.805628 | 1.217824e-49 | -8.615850e-47 |
| Msa0048410 | Msa0373550 | -0.811262 | 7.644747e-51 | -8.615850e-47 |
| Msa0055030 | Msa0373550 | 0.812832 | 3.476209e-51 | -8.615850e-47 |
| Msa0059080 | Msa0373550 | 0.803926 | 2.760255e-49 | -8.615850e-47 |
| Msa0073210 | Msa0373550 | 0.808735 | 2.676135e-50 | -8.615850e-47 |
| Msa0077320 | Msa0373550 | 0.805953 | 1.040688e-49 | -8.615850e-47 |
| Msa0080020 | Msa0373550 | 0.800874 | 1.174593e-48 | -8.615850e-47 |
| Msa0081700 | Msa0373550 | -0.816841 | 4.491145e-52 | -8.615850e-47 |
| Msa0089540 | Msa0373550 | 0.811588 | 6.495525e-51 | -8.615850e-47 |
| Msa0092220 | Msa0373550 | 0.816001 | 6.925259e-52 | -8.615850e-47 |
| Msa0103830 | Msa0373550 | 0.806563 | 7.743025e-50 | -8.615850e-47 |
| Msa0110240 | Msa0373550 | 0.845361 | 4.259664e-59 | -8.615850e-47 |
| Msa0120860 | Msa0373550 | 0.815485 | 9.026813e-52 | -8.615850e-47 |
| Msa0132870 | Msa0373550 | 0.804039 | 2.615680e-49 | -8.615850e-47 |
| Msa0150330 | Msa0373550 | 0.832904 | 7.242822e-56 | -8.615850e-47 |
| Msa0154730 | Msa0373550 | 0.809381 | 1.946031e-50 | -8.615850e-47 |
| Msa0156530 | Msa0373550 | 0.824598 | 7.402010e-54 | -8.615850e-47 |
| Msa0174060 | Msa0373550 | -0.804962 | 1.679381e-49 | -8.615850e-47 |
| Msa0187660 | Msa0373550 | 0.832803 | 7.672577e-56 | -8.615850e-47 |
| Msa0192050 | Msa0373550 | 0.825226 | 5.260193e-54 | -8.615850e-47 |
| Msa0195030 | Msa0373550 | 0.820053 | 8.405928e-53 | -8.615850e-47 |
| Msa0197920 | Msa0373550 | 0.803713 | 3.057497e-49 | -8.615850e-47 |
| Msa0214800 | Msa0373550 | 0.826995 | 1.997178e-54 | -8.615850e-47 |
| Msa0225070 | Msa0373550 | -0.833708 | 4.567368e-56 | -8.615850e-47 |
| Msa0237180 | Msa0373550 | 0.807870 | 4.092341e-50 | -8.615850e-47 |
| Msa0373550 | Msa0383930 | 0.802275 | 6.059987e-49 | -8.615850e-47 |
| Msa0373550 | Msa0385030 | 0.805399 | 1.360160e-49 | -8.615850e-47 |
| Msa0373550 | Msa0390590 | -0.802992 | 4.311639e-49 | -8.615850e-47 |
| Msa0373550 | Msa0422070 | 0.956628 | 1.882162e-114 | -8.615850e-47 |
| Msa0373550 | Msa0432260 | -0.823574 | 1.287270e-53 | -8.615850e-47 |
| Msa0373550 | Msa0434370 | 0.850154 | 2.040406e-60 | -8.615850e-47 |
| Msa0373550 | Msa0436830 | -0.812733 | 3.655023e-51 | -8.615850e-47 |
| Msa0373550 | Msa0452770 | 0.830221 | 3.317304e-55 | -8.615850e-47 |
| Msa0373550 | Msa0463970 | 0.837871 | 4.023669e-57 | -8.615850e-47 |
| Msa0373550 | Msa0468660 | 0.984504 | 9.431782e-161 | -8.615850e-47 |
| Msa0373550 | Msa0474570 | 0.807230 | 5.594629e-50 | -8.615850e-47 |
| Msa0373550 | Msa0478190 | 0.808172 | 3.528881e-50 | -8.615850e-47 |
| Msa0373550 | Msa0484410 | 0.808748 | 2.658605e-50 | -8.615850e-47 |
| Msa0373550 | Msa0509520 | 0.800919 | 1.149542e-48 | -8.615850e-47 |
| Msa0373550 | Msa0514540 | 0.957842 | 1.017837e-115 | -8.615850e-47 |
| Msa0373550 | Msa0533610 | -0.802156 | 6.411792e-49 | -8.615850e-47 |
| Msa0373550 | Msa0538050 | -0.818515 | 1.883152e-52 | -8.615850e-47 |
| Msa0373550 | Msa0563440 | 0.801345 | 9.409448e-49 | -8.615850e-47 |
| Msa0373550 | Msa0566460 | 0.815340 | 9.718360e-52 | -8.615850e-47 |
| Msa0373550 | Msa0572730 | -0.809826 | 1.561841e-50 | -8.615850e-47 |
| Msa0373550 | Msa0610240 | -0.815940 | 7.143806e-52 | -8.615850e-47 |
| Msa0373550 | Msa0616580 | 0.817150 | 3.829206e-52 | -8.615850e-47 |
| Msa0373550 | Msa0656320 | 0.822210 | 2.675433e-53 | -8.615850e-47 |
| Msa0373550 | Msa0658120 | 0.811601 | 6.452989e-51 | -8.615850e-47 |
| Msa0373550 | Msa0658520 | -0.806476 | 8.076904e-50 | -8.615850e-47 |
| Msa0373550 | Msa0659020 | -0.805425 | 1.343129e-49 | -8.615850e-47 |
| Msa0373550 | Msa0684150 | 0.801892 | 7.267337e-49 | -8.615850e-47 |
| Msa0373550 | Msa0699910 | 0.810730 | 9.967488e-51 | -8.615850e-47 |
| Msa0373550 | Msa0700410 | 0.829750 | 4.321471e-55 | -8.615850e-47 |
| Msa0373550 | Msa0701800 | -0.801064 | 1.074060e-48 | -8.615850e-47 |
| Msa0373550 | Msa0702970 | 0.807822 | 4.188883e-50 | -8.615850e-47 |
| Msa0373550 | Msa0703430 | -0.819273 | 1.266458e-52 | -8.615850e-47 |
| Msa0373550 | Msa0713290 | 0.809419 | 1.910039e-50 | -8.615850e-47 |
| Msa0373550 | Msa0721930 | 0.838631 | 2.564314e-57 | -8.615850e-47 |
| Msa0373550 | Msa0733240 | -0.800656 | 1.301236e-48 | -8.615850e-47 |
| Msa0373550 | Msa0754750 | 0.801876 | 7.322940e-49 | -8.615850e-47 |
| Msa0373550 | Msa0759230 | 0.814649 | 1.383231e-51 | -8.615850e-47 |
| Msa0373550 | Msa0762930 | 0.839261 | 1.761828e-57 | -8.615850e-47 |
| Msa0373550 | Msa0805390 | 0.823351 | 1.451421e-53 | -8.615850e-47 |
| Msa0373550 | Msa0815650 | 0.800311 | 1.529936e-48 | -8.615850e-47 |
| Msa0373550 | Msa0870220 | -0.821991 | 3.007540e-53 | -8.615850e-47 |
| Msa0373550 | Msa0880050 | 0.863503 | 2.377232e-64 | -8.615850e-47 |
| Msa0373550 | Msa0898830 | -0.802667 | 5.032080e-49 | -8.615850e-47 |
| Msa0373550 | Msa0900830 | 0.836282 | 1.025449e-56 | -8.615850e-47 |
| Msa0373550 | Msa0903460 | -0.831576 | 1.543218e-55 | -8.615850e-47 |
| Msa0373550 | Msa0926240 | 0.849350 | 3.421284e-60 | -8.615850e-47 |
| Msa0373550 | Msa0931550 | -0.807840 | 4.153354e-50 | -8.615850e-47 |
| Msa0373550 | Msa0932140 | 0.821991 | 3.008128e-53 | -8.615850e-47 |
| Msa0373550 | Msa0932150 | 0.800778 | 1.228349e-48 | -8.615850e-47 |
| Msa0373550 | Msa0934290 | -0.800433 | 1.444760e-48 | -8.615850e-47 |
| Msa0373550 | Msa0935930 | -0.831519 | 1.594532e-55 | -8.615850e-47 |
| Msa0373550 | Msa0965800 | 0.846636 | 1.917904e-59 | -8.615850e-47 |
| Msa0373550 | Msa0967880 | 0.802565 | 5.281894e-49 | -8.615850e-47 |
| Msa0373550 | Msa0967900 | -0.824000 | 1.022983e-53 | -8.615850e-47 |
| Msa0373550 | Msa0971780 | -0.804830 | 1.789728e-49 | -8.615850e-47 |
| Msa0373550 | Msa0972930 | -0.814793 | 1.285623e-51 | -8.615850e-47 |
| Msa0373550 | Msa1014550 | -0.815444 | 9.214923e-52 | -8.615850e-47 |
| Msa0373550 | Msa1018210 | -0.807764 | 4.310339e-50 | -8.615850e-47 |
| Msa0373550 | Msa1039150 | -0.803324 | 3.679991e-49 | -8.615850e-47 |
| Msa0373550 | Msa1041830 | 0.819796 | 9.623759e-53 | -8.615850e-47 |
| Msa0373550 | Msa1052000 | 0.812721 | 3.675962e-51 | -8.615850e-47 |
| Msa0373550 | Msa1053340 | 0.811909 | 5.528505e-51 | -8.615850e-47 |
| Msa0373550 | Msa1055520 | -0.830625 | 2.643480e-55 | -8.615850e-47 |
| Msa0373550 | Msa1088400 | -0.825312 | 5.020487e-54 | -8.615850e-47 |
| Msa0373550 | Msa1093190 | -0.827646 | 1.394875e-54 | -8.615850e-47 |
| Msa0373550 | Msa1094810 | 0.806064 | 9.859631e-50 | -8.615850e-47 |
| Msa0373550 | Msa1112040 | 0.806778 | 6.971642e-50 | -8.615850e-47 |
| Msa0373550 | Msa1124980 | 0.833861 | 4.180742e-56 | -8.615850e-47 |
| Msa0373550 | Msa1129240 | 0.851708 | 7.443756e-61 | -8.615850e-47 |
| Msa0373550 | Msa1132850 | 0.811084 | 8.355333e-51 | -8.615850e-47 |
| Msa0373550 | Msa1142590 | 0.812612 | 3.883567e-51 | -8.615850e-47 |
| Msa0373550 | Msa1146980 | 0.856684 | 2.724084e-62 | -8.615850e-47 |
| Msa0373550 | Msa1152860 | 0.822969 | 1.781775e-53 | -8.615850e-47 |
| Msa0373550 | Msa1167360 | 0.853186 | 2.821525e-61 | -8.615850e-47 |
| Msa0373550 | Msa1172870 | 0.835325 | 1.792289e-56 | -8.615850e-47 |
| Msa0373550 | Msa1179340 | 0.806688 | 7.286605e-50 | -8.615850e-47 |
| Msa0373550 | Msa1186260 | 0.810302 | 1.233127e-50 | -8.615850e-47 |
| Msa0373550 | Msa1197720 | 0.806218 | 9.151146e-50 | -8.615850e-47 |
| Msa0373550 | Msa1202470 | 0.842554 | 2.408907e-58 | -8.615850e-47 |
| Msa0373550 | Msa1205270 | -0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0373550 | Msa1225890 | 0.803272 | 3.773986e-49 | -8.615850e-47 |
| Msa0373550 | Msa1254910 | 0.831849 | 1.322233e-55 | -8.615850e-47 |
| Msa0373550 | Msa1304790 | 0.826146 | 3.183980e-54 | -8.615850e-47 |
| Msa0373550 | Msa1306250 | 0.804734 | 1.874037e-49 | -8.615850e-47 |
| Msa0373550 | Msa1325470 | 0.803125 | 4.046091e-49 | -8.615850e-47 |
| Msa0373550 | Msa1364110 | 0.825401 | 4.781725e-54 | -8.615850e-47 |
| Msa0373550 | Msa1377980 | -0.800210 | 1.603903e-48 | -8.615850e-47 |
| Msa0373550 | Msa1384410 | -0.810720 | 1.001762e-50 | -8.615850e-47 |
| Msa0373550 | Msa1395050 | 0.826077 | 3.306371e-54 | -8.615850e-47 |
| Msa0373550 | Msa1403940 | 0.801460 | 8.909020e-49 | -8.615850e-47 |
| Msa0373550 | Msa1423050 | 0.863943 | 1.734342e-64 | -8.615850e-47 |
| Msa0373550 | Msa1429810 | 0.801366 | 9.314655e-49 | -8.615850e-47 |
| Msa0373550 | Msa1434300 | 0.812159 | 4.877026e-51 | -8.615850e-47 |
| Msa0373550 | Msa1445010 | 0.835255 | 1.865951e-56 | -8.615850e-47 |
| Msa0373550 | Msa1462780 | 0.820709 | 5.944196e-53 | -8.615850e-47 |
| Msa0242720 | Msa0373550 | 0.827822 | 1.265487e-54 | -8.615850e-47 |
| Msa0266140 | Msa0373550 | -0.810304 | 1.231790e-50 | -8.615850e-47 |
| Msa0290800 | Msa0373550 | 0.819058 | 1.417604e-52 | -8.615850e-47 |
| Msa0291150 | Msa0373550 | 0.801836 | 7.460912e-49 | -8.615850e-47 |
| Msa0294200 | Msa0373550 | 0.824428 | 8.116665e-54 | -8.615850e-47 |
| Msa0304060 | Msa0373550 | -0.802622 | 5.141634e-49 | -8.615850e-47 |
| Msa0315660 | Msa0373550 | 0.813971 | 1.953881e-51 | -8.615850e-47 |
| Msa0328870 | Msa0373550 | 0.834961 | 2.214273e-56 | -8.615850e-47 |
| Msa0358470 | Msa0373550 | 0.843976 | 1.005941e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373550 | MtrunA17_Chr3g0122971 | 93.529 | 340 | 1 | 1 | 1 | 340 | 1 | 319 | 0.0 | 634 |
| Msa0373550 | MtrunA17_Chr4g0057861 | 90.060 | 332 | 33 | 0 | 6 | 337 | 5 | 336 | 0.0 | 621 |
| Msa0373550 | MtrunA17_Chr6g0458861 | 85.373 | 335 | 49 | 0 | 6 | 340 | 3 | 337 | 0.0 | 598 |
| Msa0373550 | MtrunA17_Chr2g0310421 | 72.781 | 338 | 91 | 1 | 2 | 339 | 78 | 414 | 0.0 | 509 |
| Msa0373550 | MtrunA17_Chr8g0357071 | 76.378 | 254 | 46 | 4 | 84 | 325 | 56 | 307 | 6.68e-129 | 370 |
| Msa0373550 | MtrunA17_Chr3g0144151 | 47.447 | 333 | 166 | 7 | 6 | 332 | 85 | 414 | 3.58e-88 | 272 |
| Msa0373550 | MtrunA17_Chr7g0252641 | 46.687 | 332 | 171 | 5 | 4 | 332 | 67 | 395 | 1.40e-85 | 264 |
| Msa0373550 | MtrunA17_Chr8g0360951 | 83.784 | 148 | 15 | 2 | 180 | 327 | 1 | 139 | 5.55e-80 | 240 |
| Msa0373550 | MtrunA17_Chr2g0316821 | 83.673 | 49 | 8 | 0 | 220 | 268 | 7 | 55 | 1.41e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373550 | AT1G13440.1 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| Msa0373550 | AT3G04120.1 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| Msa0373550 | AT1G13440.2 | 82.090 | 335 | 32 | 1 | 3 | 337 | 2 | 308 | 0.0 | 556 |
| Msa0373550 | AT1G79530.1 | 72.271 | 339 | 93 | 1 | 2 | 340 | 82 | 419 | 0.0 | 511 |
| Msa0373550 | AT1G16300.1 | 71.893 | 338 | 94 | 1 | 3 | 340 | 81 | 417 | 1.53e-180 | 506 |
| Msa0373550 | AT1G42970.1 | 47.493 | 339 | 169 | 7 | 6 | 338 | 81 | 416 | 9.41e-95 | 289 |
| Msa0373550 | AT1G12900.3 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.24e-90 | 274 |
| Msa0373550 | AT1G12900.4 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.24e-90 | 274 |
| Msa0373550 | AT1G12900.1 | 48.048 | 333 | 167 | 5 | 3 | 332 | 61 | 390 | 7.72e-90 | 275 |
| Msa0373550 | AT1G12900.5 | 48.048 | 333 | 167 | 5 | 3 | 332 | 103 | 432 | 1.75e-89 | 275 |
| Msa0373550 | AT3G26650.1 | 46.246 | 333 | 173 | 5 | 3 | 332 | 58 | 387 | 2.31e-86 | 266 |
| Msa0373550 | AT1G12900.2 | 49.814 | 269 | 132 | 3 | 66 | 332 | 41 | 308 | 9.18e-74 | 231 |
Find 100 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCAAGCTGAAGGGTATTT+TGG | 0.162108 | 3_1:-72597886 | Msa0373550:CDS |
| CCTCTCCAGTCCTTGCTTGA+TGG | 0.259153 | 3_1:+72598317 | None:intergenic |
| ATCTCCAGTGAGACAAAATT+TGG | 0.265475 | 3_1:+72597438 | None:intergenic |
| GAGATAGTAGTGTTGAAATT+AGG | 0.265618 | 3_1:+72600110 | None:intergenic |
| ACTTTGTGAAACTCGTTTCT+TGG | 0.270714 | 3_1:-72597668 | Msa0373550:CDS |
| GTCAATTTACCGTTCAATAC+TGG | 0.280860 | 3_1:+72598116 | None:intergenic |
| CAGGTTATTAATGACCGATT+TGG | 0.281961 | 3_1:-72598576 | Msa0373550:CDS |
| TATAAACAAATTTAAAAGAT+TGG | 0.282177 | 3_1:+72597157 | None:intergenic |
| TGGATTGAATAGACGGCTTT+AGG | 0.284704 | 3_1:-72597303 | Msa0373550:three_prime_UTR |
| CTTGGCAGCTCCAGTGCTGC+TGG | 0.294421 | 3_1:+72598265 | None:intergenic |
| AAAACAGGATTTGGAAGAAT+TGG | 0.309904 | 3_1:-72599870 | Msa0373550:intron |
| GACACTAAGACCCTTCTCTT+TGG | 0.356905 | 3_1:-72599610 | Msa0373550:CDS |
| AAACATAGGTGCATCTTTGC+TGG | 0.359553 | 3_1:+72598783 | None:intergenic |
| ATTCAAAGCAATTCCAGCTT+TGG | 0.384329 | 3_1:+72597695 | None:intergenic |
| ATGACAACGAATGGGGTTAC+AGG | 0.389525 | 3_1:-72597644 | Msa0373550:intron |
| GTGGTATCTACTGACTTTAT+TGG | 0.395775 | 3_1:-72597846 | Msa0373550:CDS |
| TCACCCCATGGAATCTCCTC+AGG | 0.421872 | 3_1:+72599450 | None:intergenic |
| GCCACTCAGAAGACTGTTGA+TGG | 0.424666 | 3_1:-72598341 | Msa0373550:CDS |
| TTTCAACACTACTATCTCAA+TGG | 0.436913 | 3_1:-72600105 | Msa0373550:exon |
| AGCAGAAATAACAACCTTCT+TGG | 0.437227 | 3_1:+72598807 | None:intergenic |
| TGGCTTGATGAGTCTGAGCT+TGG | 0.438497 | 3_1:-72597477 | Msa0373550:exon |
| GATTAGAGTGAGAGGTTTGG+TGG | 0.439599 | 3_1:+72600151 | None:intergenic |
| CAAAGCTGCTGCTCACTTGA+AGG | 0.450187 | 3_1:-72599376 | Msa0373550:intron |
| CAGTTGTTGACCTTACTGTA+AGG | 0.450759 | 3_1:-72598058 | Msa0373550:CDS |
| AGCATCTTTGATGCCAAAGC+TGG | 0.451793 | 3_1:-72597708 | Msa0373550:CDS |
| GATTGTCCACATTGCTTCTG+TGG | 0.453352 | 3_1:-72597497 | Msa0373550:CDS |
| GACCGATTTGGAATCGTTGA+GGG | 0.456120 | 3_1:-72598564 | Msa0373550:CDS |
| TTGGAAACAATGTTAAGCTC+TGG | 0.470905 | 3_1:+72598730 | None:intergenic |
| TTCTTGGTATGACAACGAAT+GGG | 0.472520 | 3_1:-72597652 | Msa0373550:CDS |
| CAGCATCTGACAAGAAGATC+AGG | 0.474762 | 3_1:-72599995 | Msa0373550:CDS |
| TCTTCTCAAGCCTTACAGTA+AGG | 0.474802 | 3_1:+72598048 | None:intergenic |
| TTCAACACTACTATCTCAAT+GGG | 0.475956 | 3_1:-72600104 | Msa0373550:intron |
| AACATCATTCCCAGCAGCAC+TGG | 0.480002 | 3_1:-72598275 | Msa0373550:CDS |
| GATGCACCTATGTTTGTTGT+TGG | 0.480077 | 3_1:-72598775 | Msa0373550:CDS |
| TGAGATTAGAGTGAGAGGTT+TGG | 0.487702 | 3_1:+72600148 | None:intergenic |
| TGGGACACGGAATGACATTC+CGG | 0.489853 | 3_1:+72598094 | None:intergenic |
| TTCAAGTATGACACTGTTCA+CGG | 0.491509 | 3_1:-72599664 | Msa0373550:CDS |
| ATTTGGAAGAATTGGACGAT+TGG | 0.494519 | 3_1:-72599862 | Msa0373550:CDS |
| GATTACGTTATTGAGTCAAC+TGG | 0.498321 | 3_1:-72599417 | Msa0373550:CDS |
| GAGATTCCATGGGGTGAGGT+TGG | 0.499881 | 3_1:-72599444 | Msa0373550:CDS |
| GACCCTCAACGATTCCAAAT+CGG | 0.501135 | 3_1:+72598562 | None:intergenic |
| CTGACTTTATTGGCGATAGC+AGG | 0.501827 | 3_1:-72597836 | Msa0373550:intron |
| TTTCTTGGTATGACAACGAA+TGG | 0.505583 | 3_1:-72597653 | Msa0373550:CDS |
| GGAATCAGAGGGCAAGCTGA+AGG | 0.509794 | 3_1:-72597895 | Msa0373550:CDS |
| GATAAATAAACAACCTGTGA+TGG | 0.511375 | 3_1:+72598521 | None:intergenic |
| CAACTGAAACATCGACGGTT+GGG | 0.515252 | 3_1:+72598075 | None:intergenic |
| TTTCATCACTACTGATTACA+TGG | 0.515255 | 3_1:-72599784 | Msa0373550:intron |
| CAGCAGCACTGGAGCTGCCA+AGG | 0.520669 | 3_1:-72598264 | Msa0373550:intron |
| GGCAGCCTTGATCTGCTCAT+AGG | 0.524781 | 3_1:+72598019 | None:intergenic |
| TTGGCAGCTCCAGTGCTGCT+GGG | 0.526344 | 3_1:+72598266 | None:intergenic |
| CAATCAAGCTAAATATAAAG+AGG | 0.528587 | 3_1:+72597200 | None:intergenic |
| AAACATCGACGGTTGGGACA+CGG | 0.531370 | 3_1:+72598081 | None:intergenic |
| AAGAGTGAGATTAGAGTGAG+AGG | 0.533434 | 3_1:+72600143 | None:intergenic |
| CTTCTTTCTCACCAAAGAGA+AGG | 0.533597 | 3_1:+72599599 | None:intergenic |
| TTCTTTCTCACCAAAGAGAA+GGG | 0.538245 | 3_1:+72599600 | None:intergenic |
| ACAACTGAAACATCGACGGT+TGG | 0.545734 | 3_1:+72598074 | None:intergenic |
| GTTAGTAGTGCAACTAGCAT+TGG | 0.551894 | 3_1:+72598711 | None:intergenic |
| AACATAGGTGCATCTTTGCT+GGG | 0.553014 | 3_1:+72598784 | None:intergenic |
| GTAACAATTTACAGCAGTAT+CGG | 0.554503 | 3_1:-72597128 | Msa0373550:three_prime_UTR |
| ATGGTCCATCAAGCAAGGAC+TGG | 0.555599 | 3_1:-72598322 | Msa0373550:CDS |
| CTGCCTTGCTCCCCTCGCCA+AGG | 0.563779 | 3_1:-72598689 | Msa0373550:intron |
| ATGACACTGTTCACGGTCAG+TGG | 0.566865 | 3_1:-72599657 | Msa0373550:CDS |
| AGCAACCTATGAGCAGATCA+AGG | 0.567372 | 3_1:-72598024 | Msa0373550:CDS |
| AAACCTTGGCGAGGGGAGCA+AGG | 0.568255 | 3_1:+72598686 | None:intergenic |
| GGAACCCTGAGGAGATTCCA+TGG | 0.575104 | 3_1:-72599455 | Msa0373550:CDS |
| AGTCTGAGCTTGGATTGCAT+TGG | 0.577784 | 3_1:-72597467 | Msa0373550:three_prime_UTR |
| TTAACACCAACAACAAACAT+AGG | 0.578256 | 3_1:+72598769 | None:intergenic |
| TCCCTCTCTAAAACAAGAGT+AGG | 0.578982 | 3_1:+72597274 | None:intergenic |
| TGAGGAGATTCCATGGGGTG+AGG | 0.584999 | 3_1:-72599448 | Msa0373550:CDS |
| TGACCGATTTGGAATCGTTG+AGG | 0.585725 | 3_1:-72598565 | Msa0373550:CDS |
| ATTTGAAACATACAGGCTGT+AGG | 0.586694 | 3_1:-72598149 | Msa0373550:intron |
| GAACCCTGAGGAGATTCCAT+GGG | 0.589804 | 3_1:-72599454 | Msa0373550:CDS |
| TCAAGCAAGGACTGGAGAGG+TGG | 0.590129 | 3_1:-72598314 | Msa0373550:CDS |
| GTATTGAACGGTAAATTGAC+CGG | 0.592350 | 3_1:-72598113 | Msa0373550:CDS |
| ACCACAGTTCACGCCATCAC+AGG | 0.598843 | 3_1:-72598534 | Msa0373550:intron |
| AAGATCAGGATCGGAATCAA+CGG | 0.599281 | 3_1:-72599981 | Msa0373550:intron |
| TGATTAGGGTGGTGCCAAGA+AGG | 0.600438 | 3_1:-72598821 | Msa0373550:intron |
| CACCCCATGGAATCTCCTCA+GGG | 0.600637 | 3_1:+72599451 | None:intergenic |
| GCTGCTGGGAATGATGTTGA+AGG | 0.601432 | 3_1:+72598280 | None:intergenic |
| TCAGCTCCAACCTCACCCCA+TGG | 0.603751 | 3_1:+72599438 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3_1:-72598761 | Msa0373550:CDS |
| GAATCAGAGGGCAAGCTGAA+GGG | 0.606362 | 3_1:-72597894 | Msa0373550:CDS |
| GACAATCAAATCAATAACAC+GGG | 0.607012 | 3_1:+72597513 | None:intergenic |
| AGTGTCATACTTGAACATAT+AGG | 0.610966 | 3_1:+72599672 | None:intergenic |
| ATGTAATCAGTAGTGATGAA+AGG | 0.611234 | 3_1:+72599786 | None:intergenic |
| TCTTGGTATGACAACGAATG+GGG | 0.619721 | 3_1:-72597651 | Msa0373550:CDS |
| GGGTTACACTGAAGATGATG+TGG | 0.627513 | 3_1:-72597865 | Msa0373550:CDS |
| TCTGACAAGAAGATCAGGAT+CGG | 0.628839 | 3_1:-72599990 | Msa0373550:CDS |
| AAGAGGATCGCAAAGAGACA+TGG | 0.630623 | 3_1:+72597217 | None:intergenic |
| TGTTGATGGTCCATCAAGCA+AGG | 0.632457 | 3_1:-72598327 | Msa0373550:CDS |
| GTCAACAACTGAAACATCGA+CGG | 0.646627 | 3_1:+72598070 | None:intergenic |
| CCATCAAGCAAGGACTGGAG+AGG | 0.655042 | 3_1:-72598317 | Msa0373550:CDS |
| GGACAATCAAATCAATAACA+CGG | 0.656794 | 3_1:+72597512 | None:intergenic |
| AAAACCAGGGAGGAATCAGA+GGG | 0.660427 | 3_1:-72597906 | Msa0373550:intron |
| ACCTGTGATGGCGTGAACTG+TGG | 0.667657 | 3_1:+72598533 | None:intergenic |
| AAAGTGCTTCCAGTATTGAA+CGG | 0.668457 | 3_1:-72598125 | Msa0373550:CDS |
| ATCAAGCCACAGAAGCAATG+TGG | 0.677587 | 3_1:+72597491 | None:intergenic |
| AACCCTGAGGAGATTCCATG+GGG | 0.716862 | 3_1:-72599453 | Msa0373550:CDS |
| ACCATCAACAGTCTTCTGAG+TGG | 0.726815 | 3_1:+72598340 | None:intergenic |
| TCTGAATAATAGGAACCCTG+AGG | 0.747270 | 3_1:-72599466 | Msa0373550:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGATTAATTTTGTAAT+CGG | + | chr3_1:72597534-72597553 | None:intergenic | 10.0% |
| !!! | AATTTGAAATTTATGTAATT+TGG | - | chr3_1:72598425-72598444 | Msa0373550:intron | 10.0% |
| !! | TATAAACAAATTTAAAAGAT+TGG | + | chr3_1:72600125-72600144 | None:intergenic | 10.0% |
| !! | TTAATTAATTACATCCAAAA+GGG | + | chr3_1:72597764-72597783 | None:intergenic | 15.0% |
| !! | ATTAATTAATTACATCCAAA+AGG | + | chr3_1:72597765-72597784 | None:intergenic | 15.0% |
| !! | TATCAAAATCTAATTAATTG+TGG | + | chr3_1:72598403-72598422 | None:intergenic | 15.0% |
| !!! | TTTTAAATTATTAGCTTCAT+TGG | - | chr3_1:72598653-72598672 | Msa0373550:intron | 15.0% |
| !! | AAATTTGTCAAATTATTACA+TGG | - | chr3_1:72599054-72599073 | Msa0373550:intron | 15.0% |
| !!! | GCATTTTTATTTTTGTATTT+TGG | - | chr3_1:72599956-72599975 | Msa0373550:intron | 15.0% |
| !! | TAAACGAGAAATAGATTAAA+CGG | + | chr3_1:72597236-72597255 | None:intergenic | 20.0% |
| !!! | TAATTTATGATCTGTGATTT+TGG | - | chr3_1:72597723-72597742 | Msa0373550:intron | 20.0% |
| !! | TAATTAATTACATCCAAAAG+GGG | + | chr3_1:72597763-72597782 | None:intergenic | 20.0% |
| !!! | TATTATTTGATAGAGCATTT+TGG | - | chr3_1:72597957-72597976 | Msa0373550:intron | 20.0% |
| !!! | ATTATTTGATAGAGCATTTT+GGG | - | chr3_1:72597958-72597977 | Msa0373550:intron | 20.0% |
| !!! | ATATTGAATTTGAAACATAC+AGG | - | chr3_1:72599123-72599142 | Msa0373550:intron | 20.0% |
| !!! | TTTTGCAATTTCAACAAAAT+AGG | + | chr3_1:72599356-72599375 | None:intergenic | 20.0% |
| ! | TGATTAAGAGAGAAAAAAAG+TGG | + | chr3_1:72597213-72597232 | None:intergenic | 25.0% |
| !!! | AACTGTTTCAACTTTAAAAC+AGG | - | chr3_1:72597394-72597413 | Msa0373550:three_prime_UTR | 25.0% |
| !!! | TTCAACTTTAAAACAGGATT+TGG | - | chr3_1:72597400-72597419 | Msa0373550:three_prime_UTR | 25.0% |
| !!! | TTATTTGATAGAGCATTTTG+GGG | - | chr3_1:72597959-72597978 | Msa0373550:intron | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr3_1:72598193-72598212 | None:intergenic | 25.0% |
| ! | TTATGTAATTTGGATTGTTG+TGG | - | chr3_1:72598435-72598454 | Msa0373550:intron | 25.0% |
| !! | ATTAATCTTTTACTCTTTGC+AGG | - | chr3_1:72598684-72598703 | Msa0373550:intron | 25.0% |
| ! | TGATTAACTGATTGATTGTT+TGG | - | chr3_1:72598903-72598922 | Msa0373550:intron | 25.0% |
| !! | TTTATCATTATAGAGTACCT+TGG | + | chr3_1:72599035-72599054 | None:intergenic | 25.0% |
| ! | CAAATTATTACATGGTTGAA+TGG | - | chr3_1:72599062-72599081 | Msa0373550:intron | 25.0% |
| ! | AAGTTTAACACTTTACTTGA+TGG | + | chr3_1:72599284-72599303 | None:intergenic | 25.0% |
| ! | AAAATAGGTTTATGTTAGGA+GGG | + | chr3_1:72599341-72599360 | None:intergenic | 25.0% |
| ! | CAACAAAATAGGTTTATGTT+AGG | + | chr3_1:72599345-72599364 | None:intergenic | 25.0% |
| !!! | TGAACTTTATTTTCATTTGC+AGG | - | chr3_1:72599545-72599564 | Msa0373550:intron | 25.0% |
| ! | ATCACAATATGACATTGAAT+TGG | - | chr3_1:72599680-72599699 | Msa0373550:intron | 25.0% |
| !! | GATGAACACTATGTATATTT+TGG | + | chr3_1:72599710-72599729 | None:intergenic | 25.0% |
| !! | GCAACACAAATTTTTATTCT+TGG | + | chr3_1:72599887-72599906 | None:intergenic | 25.0% |
| ! | AGAATAAAAATTTGTGTTGC+TGG | - | chr3_1:72599887-72599906 | Msa0373550:intron | 25.0% |
| !! | GAATAAAAATTTGTGTTGCT+GGG | - | chr3_1:72599888-72599907 | Msa0373550:intron | 25.0% |
| !!! | TGTATTTTGGATTGAATAGA+CGG | - | chr3_1:72599969-72599988 | Msa0373550:intron | 25.0% |
| ! | CAATCAAGCTAAATATAAAG+AGG | + | chr3_1:72600082-72600101 | None:intergenic | 25.0% |
| ! | GAGATAGTAGTGTTGAAATT+AGG | + | chr3_1:72597172-72597191 | None:intergenic | 30.0% |
| TTTCAACACTACTATCTCAA+TGG | - | chr3_1:72597174-72597193 | Msa0373550:three_prime_UTR | 30.0% | |
| TTCAACACTACTATCTCAAT+GGG | - | chr3_1:72597175-72597194 | Msa0373550:three_prime_UTR | 30.0% | |
| AAAACAGGATTTGGAAGAAT+TGG | - | chr3_1:72597409-72597428 | Msa0373550:three_prime_UTR | 30.0% | |
| ATGTAATCAGTAGTGATGAA+AGG | + | chr3_1:72597496-72597515 | None:intergenic | 30.0% | |
| ! | TTTCATCACTACTGATTACA+TGG | - | chr3_1:72597495-72597514 | Msa0373550:CDS | 30.0% |
| CAAATAATGAGATTCTACTC+TGG | - | chr3_1:72597548-72597567 | Msa0373550:intron | 30.0% | |
| AGTGTCATACTTGAACATAT+AGG | + | chr3_1:72597610-72597629 | None:intergenic | 30.0% | |
| ! | GCATTTTGAACTTAAGGTTA+AGG | - | chr3_1:72597647-72597666 | Msa0373550:CDS | 30.0% |
| ATCACAGATCATAAATTACC+TGG | + | chr3_1:72597721-72597740 | None:intergenic | 30.0% | |
| TCTGATTGCATCTGAATAAT+AGG | - | chr3_1:72597803-72597822 | Msa0373550:intron | 30.0% | |
| TGTATCGAATCATTCAAACA+GGG | + | chr3_1:72598350-72598369 | None:intergenic | 30.0% | |
| TTAACACCAACAACAAACAT+AGG | + | chr3_1:72598513-72598532 | None:intergenic | 30.0% | |
| !! | AGGGTATTGAAAAAAAACCT+TGG | + | chr3_1:72598610-72598629 | None:intergenic | 30.0% |
| CCAATAAACATGCTACAAAA+GGG | + | chr3_1:72598629-72598648 | None:intergenic | 30.0% | |
| ACCAATAAACATGCTACAAA+AGG | + | chr3_1:72598630-72598649 | None:intergenic | 30.0% | |
| GATAAATAAACAACCTGTGA+TGG | + | chr3_1:72598761-72598780 | None:intergenic | 30.0% | |
| GGAGGGAAAAATTATTCAAT+TGG | + | chr3_1:72599324-72599343 | None:intergenic | 30.0% | |
| CAAAATAGGTTTATGTTAGG+AGG | + | chr3_1:72599342-72599361 | None:intergenic | 30.0% | |
| TTGTTGAAATTGCAAAAACC+AGG | - | chr3_1:72599359-72599378 | Msa0373550:intron | 30.0% | |
| TGTTGAAATTGCAAAAACCA+GGG | - | chr3_1:72599360-72599379 | Msa0373550:intron | 30.0% | |
| ! | AAACTGTCATGATCAGTTTT+TGG | - | chr3_1:72599497-72599516 | Msa0373550:intron | 30.0% |
| AATGTCATATTGTGATAGCA+AGG | + | chr3_1:72599676-72599695 | None:intergenic | 30.0% | |
| GACAATCAAATCAATAACAC+GGG | + | chr3_1:72599769-72599788 | None:intergenic | 30.0% | |
| GGACAATCAAATCAATAACA+CGG | + | chr3_1:72599770-72599789 | None:intergenic | 30.0% | |
| ATTTGGAAGAATTGGACGAT+TGG | - | chr3_1:72597417-72597436 | Msa0373550:three_prime_UTR | 35.0% | |
| TTCAAGTATGACACTGTTCA+CGG | - | chr3_1:72597615-72597634 | Msa0373550:intron | 35.0% | |
| !!! | GTGGAAGCATTTTGAACTTA+AGG | - | chr3_1:72597641-72597660 | Msa0373550:intron | 35.0% |
| TTCTTTCTCACCAAAGAGAA+GGG | + | chr3_1:72597682-72597701 | None:intergenic | 35.0% | |
| !!! | GAGAAAGAAGTTGCTGTTTT+CGG | - | chr3_1:72597693-72597712 | Msa0373550:CDS | 35.0% |
| GATTACGTTATTGAGTCAAC+TGG | - | chr3_1:72597862-72597881 | Msa0373550:CDS | 35.0% | |
| CAATATCAACCTATGAAGCA+CGG | - | chr3_1:72598126-72598145 | Msa0373550:CDS | 35.0% | |
| ! | TAGTTGATATCTGTGAAGCA+CGG | + | chr3_1:72598298-72598317 | None:intergenic | 35.0% |
| CTGTATCGAATCATTCAAAC+AGG | + | chr3_1:72598351-72598370 | None:intergenic | 35.0% | |
| TTTGGATTGTTGTGGTGATT+AGG | - | chr3_1:72598443-72598462 | Msa0373550:intron | 35.0% | |
| TTGGATTGTTGTGGTGATTA+GGG | - | chr3_1:72598444-72598463 | Msa0373550:intron | 35.0% | |
| AGCAGAAATAACAACCTTCT+TGG | + | chr3_1:72598475-72598494 | None:intergenic | 35.0% | |
| TTGGAAACAATGTTAAGCTC+TGG | + | chr3_1:72598552-72598571 | None:intergenic | 35.0% | |
| TTGAAAAAAAACCTTGGCGA+GGG | + | chr3_1:72598604-72598623 | None:intergenic | 35.0% | |
| ATTGAAAAAAAACCTTGGCG+AGG | + | chr3_1:72598605-72598624 | None:intergenic | 35.0% | |
| ! | CCCTTTTGTAGCATGTTTAT+TGG | - | chr3_1:72598626-72598645 | Msa0373550:intron | 35.0% |
| CAGGTTATTAATGACCGATT+TGG | - | chr3_1:72598703-72598722 | Msa0373550:CDS | 35.0% | |
| ! | ATTTGAAACATACAGGCTGT+AGG | - | chr3_1:72599130-72599149 | Msa0373550:intron | 35.0% |
| ! | AAAGTGCTTCCAGTATTGAA+CGG | - | chr3_1:72599154-72599173 | Msa0373550:intron | 35.0% |
| GTCAATTTACCGTTCAATAC+TGG | + | chr3_1:72599166-72599185 | None:intergenic | 35.0% | |
| GTATTGAACGGTAAATTGAC+CGG | - | chr3_1:72599166-72599185 | Msa0373550:intron | 35.0% | |
| !! | GTGGTATCTACTGACTTTAT+TGG | - | chr3_1:72599433-72599452 | Msa0373550:CDS | 35.0% |
| ATTCAAAGCAATTCCAGCTT+TGG | + | chr3_1:72599587-72599606 | None:intergenic | 35.0% | |
| ACTTTGTGAAACTCGTTTCT+TGG | - | chr3_1:72599611-72599630 | Msa0373550:CDS | 35.0% | |
| TTTCTTGGTATGACAACGAA+TGG | - | chr3_1:72599626-72599645 | Msa0373550:CDS | 35.0% | |
| TTCTTGGTATGACAACGAAT+GGG | - | chr3_1:72599627-72599646 | Msa0373550:CDS | 35.0% | |
| ! | TGTTCCAAATTTTGTCTCAC+TGG | - | chr3_1:72599837-72599856 | Msa0373550:CDS | 35.0% |
| ATCTCCAGTGAGACAAAATT+TGG | + | chr3_1:72599844-72599863 | None:intergenic | 35.0% | |
| !!! | TACCTACTCTTGTTTTAGAG+AGG | - | chr3_1:72600003-72600022 | Msa0373550:intron | 35.0% |
| !!! | ACCTACTCTTGTTTTAGAGA+GGG | - | chr3_1:72600004-72600023 | Msa0373550:intron | 35.0% |
| TGAGATTAGAGTGAGAGGTT+TGG | + | chr3_1:72597134-72597153 | None:intergenic | 40.0% | |
| AAGAGTGAGATTAGAGTGAG+AGG | + | chr3_1:72597139-72597158 | None:intergenic | 40.0% | |
| TCTGACAAGAAGATCAGGAT+CGG | - | chr3_1:72597289-72597308 | Msa0373550:three_prime_UTR | 40.0% | |
| AAGATCAGGATCGGAATCAA+CGG | - | chr3_1:72597298-72597317 | Msa0373550:three_prime_UTR | 40.0% | |
| CTTCTTTCTCACCAAAGAGA+AGG | + | chr3_1:72597683-72597702 | None:intergenic | 40.0% | |
| TCTGAATAATAGGAACCCTG+AGG | - | chr3_1:72597813-72597832 | Msa0373550:intron | 40.0% | |
| ! | AACTGGTGTTTTCACTGACA+AGG | - | chr3_1:72597879-72597898 | Msa0373550:CDS | 40.0% |
| ATTGTCTCACTCAGTAGAGT+CGG | + | chr3_1:72598002-72598021 | None:intergenic | 40.0% | |
| AACATAGGTGCATCTTTGCT+GGG | + | chr3_1:72598498-72598517 | None:intergenic | 40.0% | |
| AAACATAGGTGCATCTTTGC+TGG | + | chr3_1:72598499-72598518 | None:intergenic | 40.0% | |
| !! | GATGCACCTATGTTTGTTGT+TGG | - | chr3_1:72598504-72598523 | Msa0373550:intron | 40.0% |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | - | chr3_1:72598518-72598537 | Msa0373550:intron | 40.0% |
| GTTAGTAGTGCAACTAGCAT+TGG | + | chr3_1:72598571-72598590 | None:intergenic | 40.0% | |
| TGAAAAAAAACCTTGGCGAG+GGG | + | chr3_1:72598603-72598622 | None:intergenic | 40.0% | |
| GTCAACAACTGAAACATCGA+CGG | + | chr3_1:72599212-72599231 | None:intergenic | 40.0% | |
| CAGTTGTTGACCTTACTGTA+AGG | - | chr3_1:72599221-72599240 | Msa0373550:intron | 40.0% | |
| TCTTCTCAAGCCTTACAGTA+AGG | + | chr3_1:72599234-72599253 | None:intergenic | 40.0% | |
| TGAAATTGCAAAAACCAGGG+AGG | - | chr3_1:72599363-72599382 | Msa0373550:intron | 40.0% | |
| TCTTGGTATGACAACGAATG+GGG | - | chr3_1:72599628-72599647 | Msa0373550:CDS | 40.0% | |
| TGGATTGAATAGACGGCTTT+AGG | - | chr3_1:72599976-72599995 | Msa0373550:intron | 40.0% | |
| !! | TCCCTCTCTAAAACAAGAGT+AGG | + | chr3_1:72600008-72600027 | None:intergenic | 40.0% |
| GATTAGAGTGAGAGGTTTGG+TGG | + | chr3_1:72597131-72597150 | None:intergenic | 45.0% | |
| CAGCATCTGACAAGAAGATC+AGG | - | chr3_1:72597284-72597303 | Msa0373550:three_prime_UTR | 45.0% | |
| GACACTAAGACCCTTCTCTT+TGG | - | chr3_1:72597669-72597688 | Msa0373550:CDS | 45.0% | |
| !!! | AAGTTGCTGTTTTCGGAACC+AGG | - | chr3_1:72597700-72597719 | Msa0373550:CDS | 45.0% |
| ! | TCTGAATCTCATGCCCCTTT+TGG | - | chr3_1:72597747-72597766 | Msa0373550:intron | 45.0% |
| ACTCAGTAGAGTCGGATACA+TGG | + | chr3_1:72597994-72598013 | None:intergenic | 45.0% | |
| CAACCTATGAAGCACGGATA+CGG | - | chr3_1:72598132-72598151 | Msa0373550:CDS | 45.0% | |
| GATTGTTGTGGTGATTAGGG+TGG | - | chr3_1:72598447-72598466 | Msa0373550:intron | 45.0% | |
| !! | TGACCGATTTGGAATCGTTG+AGG | - | chr3_1:72598714-72598733 | Msa0373550:CDS | 45.0% |
| !! | GACCGATTTGGAATCGTTGA+GGG | - | chr3_1:72598715-72598734 | Msa0373550:CDS | 45.0% |
| GACCCTCAACGATTCCAAAT+CGG | + | chr3_1:72598720-72598739 | None:intergenic | 45.0% | |
| ACCATCAACAGTCTTCTGAG+TGG | + | chr3_1:72598942-72598961 | None:intergenic | 45.0% | |
| !! | TGTTGATGGTCCATCAAGCA+AGG | - | chr3_1:72598952-72598971 | Msa0373550:intron | 45.0% |
| CAACTGAAACATCGACGGTT+GGG | + | chr3_1:72599207-72599226 | None:intergenic | 45.0% | |
| ACAACTGAAACATCGACGGT+TGG | + | chr3_1:72599208-72599227 | None:intergenic | 45.0% | |
| AGCAACCTATGAGCAGATCA+AGG | - | chr3_1:72599255-72599274 | Msa0373550:intron | 45.0% | |
| AAAAACCAGGGAGGAATCAG+AGG | - | chr3_1:72599372-72599391 | Msa0373550:intron | 45.0% | |
| AAAACCAGGGAGGAATCAGA+GGG | - | chr3_1:72599373-72599392 | Msa0373550:intron | 45.0% | |
| !!! | GGCAAGCTGAAGGGTATTTT+GGG | - | chr3_1:72599394-72599413 | Msa0373550:CDS | 45.0% |
| GGGTTACACTGAAGATGATG+TGG | - | chr3_1:72599414-72599433 | Msa0373550:CDS | 45.0% | |
| CTGACTTTATTGGCGATAGC+AGG | - | chr3_1:72599443-72599462 | Msa0373550:CDS | 45.0% | |
| TTGGCGATAGCAGGTAATGT+TGG | - | chr3_1:72599452-72599471 | Msa0373550:CDS | 45.0% | |
| AGCATCTTTGATGCCAAAGC+TGG | - | chr3_1:72599571-72599590 | Msa0373550:intron | 45.0% | |
| ATGACAACGAATGGGGTTAC+AGG | - | chr3_1:72599635-72599654 | Msa0373550:CDS | 45.0% | |
| GATTGTCCACATTGCTTCTG+TGG | - | chr3_1:72599782-72599801 | Msa0373550:intron | 45.0% | |
| ATCAAGCCACAGAAGCAATG+TGG | + | chr3_1:72599791-72599810 | None:intergenic | 45.0% | |
| AGTCTGAGCTTGGATTGCAT+TGG | - | chr3_1:72599812-72599831 | Msa0373550:CDS | 45.0% | |
| AAGAGGATCGCAAAGAGACA+TGG | + | chr3_1:72600065-72600084 | None:intergenic | 45.0% | |
| ATGACACTGTTCACGGTCAG+TGG | - | chr3_1:72597622-72597641 | Msa0373550:intron | 50.0% | |
| GAACCCTGAGGAGATTCCAT+GGG | - | chr3_1:72597825-72597844 | Msa0373550:intron | 50.0% | |
| AACCCTGAGGAGATTCCATG+GGG | - | chr3_1:72597826-72597845 | Msa0373550:intron | 50.0% | |
| CAAAGCTGCTGCTCACTTGA+AGG | - | chr3_1:72597903-72597922 | Msa0373550:intron | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr3_1:72598138-72598157 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | chr3_1:72598138-72598157 | Msa0373550:intron | 50.0% | |
| ! | TACTCGGATTAGGCGTGTCT+CGG | + | chr3_1:72598271-72598290 | None:intergenic | 50.0% |
| TGTGAAGCACGGACACTACT+CGG | + | chr3_1:72598287-72598306 | None:intergenic | 50.0% | |
| ! | TGATTAGGGTGGTGCCAAGA+AGG | - | chr3_1:72598458-72598477 | Msa0373550:intron | 50.0% |
| GCCACTCAGAAGACTGTTGA+TGG | - | chr3_1:72598938-72598957 | Msa0373550:intron | 50.0% | |
| ATGGTCCATCAAGCAAGGAC+TGG | - | chr3_1:72598957-72598976 | Msa0373550:intron | 50.0% | |
| GCTGCTGGGAATGATGTTGA+AGG | + | chr3_1:72599002-72599021 | None:intergenic | 50.0% | |
| AACATCATTCCCAGCAGCAC+TGG | - | chr3_1:72599004-72599023 | Msa0373550:intron | 50.0% | |
| TGGGACACGGAATGACATTC+CGG | + | chr3_1:72599188-72599207 | None:intergenic | 50.0% | |
| AAACATCGACGGTTGGGACA+CGG | + | chr3_1:72599201-72599220 | None:intergenic | 50.0% | |
| GAATCAGAGGGCAAGCTGAA+GGG | - | chr3_1:72599385-72599404 | Msa0373550:CDS | 50.0% | |
| !!! | GGGCAAGCTGAAGGGTATTT+TGG | - | chr3_1:72599393-72599412 | Msa0373550:CDS | 50.0% |
| TGGCTTGATGAGTCTGAGCT+TGG | - | chr3_1:72599802-72599821 | Msa0373550:CDS | 50.0% | |
| GGAACCCTGAGGAGATTCCA+TGG | - | chr3_1:72597824-72597843 | Msa0373550:intron | 55.0% | |
| CACCCCATGGAATCTCCTCA+GGG | + | chr3_1:72597831-72597850 | None:intergenic | 55.0% | |
| TCACCCCATGGAATCTCCTC+AGG | + | chr3_1:72597832-72597851 | None:intergenic | 55.0% | |
| TGAGGAGATTCCATGGGGTG+AGG | - | chr3_1:72597831-72597850 | Msa0373550:intron | 55.0% | |
| GAGATTCCATGGGGTGAGGT+TGG | - | chr3_1:72597835-72597854 | Msa0373550:intron | 55.0% | |
| ! | GATTAGGCGTGTCTCGGTGT+CGG | + | chr3_1:72598265-72598284 | None:intergenic | 55.0% |
| GCACGGACACTACTCGGATT+AGG | + | chr3_1:72598281-72598300 | None:intergenic | 55.0% | |
| ACCACAGTTCACGCCATCAC+AGG | - | chr3_1:72598745-72598764 | Msa0373550:CDS | 55.0% | |
| ! | ACCTGTGATGGCGTGAACTG+TGG | + | chr3_1:72598749-72598768 | None:intergenic | 55.0% |
| CCTCTCCAGTCCTTGCTTGA+TGG | + | chr3_1:72598965-72598984 | None:intergenic | 55.0% | |
| CCATCAAGCAAGGACTGGAG+AGG | - | chr3_1:72598962-72598981 | Msa0373550:intron | 55.0% | |
| TCAAGCAAGGACTGGAGAGG+TGG | - | chr3_1:72598965-72598984 | Msa0373550:intron | 55.0% | |
| GGCAGCCTTGATCTGCTCAT+AGG | + | chr3_1:72599263-72599282 | None:intergenic | 55.0% | |
| GGAATCAGAGGGCAAGCTGA+AGG | - | chr3_1:72599384-72599403 | Msa0373550:CDS | 55.0% | |
| TCAGCTCCAACCTCACCCCA+TGG | + | chr3_1:72597844-72597863 | None:intergenic | 60.0% | |
| ACGGATACGGACACGGACAC+CGG | - | chr3_1:72598145-72598164 | Msa0373550:intron | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | + | chr3_1:72598167-72598186 | None:intergenic | 60.0% | |
| AAACCTTGGCGAGGGGAGCA+AGG | + | chr3_1:72598596-72598615 | None:intergenic | 60.0% | |
| ! | TTGGCAGCTCCAGTGCTGCT+GGG | + | chr3_1:72599016-72599035 | None:intergenic | 60.0% |
| CTTGCCCTCTGATTCCTCCC+TGG | + | chr3_1:72599380-72599399 | None:intergenic | 60.0% | |
| CACGGACACCGGACACGACA+CGG | - | chr3_1:72598156-72598175 | Msa0373550:intron | 65.0% | |
| CTTGGCAGCTCCAGTGCTGC+TGG | + | chr3_1:72599017-72599036 | None:intergenic | 65.0% | |
| ! | CAGCAGCACTGGAGCTGCCA+AGG | - | chr3_1:72599015-72599034 | Msa0373550:intron | 65.0% |
| CTGCCTTGCTCCCCTCGCCA+AGG | - | chr3_1:72598590-72598609 | Msa0373550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72597128 | 72600173 | 72597128 | ID=Msa0373550;Name=Msa0373550 |
| chr3_1 | mRNA | 72597128 | 72600173 | 72597128 | ID=Msa0373550-mRNA-1;Parent=Msa0373550;Name=Msa0373550-mRNA-1;_AED=0.12;_eAED=0.12;_QI=65|1|1|1|0.91|0.84|13|344|340 |
| chr3_1 | exon | 72597128 | 72597344 | 72597128 | ID=Msa0373550-mRNA-1:exon:16362;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72597365 | 72597537 | 72597365 | ID=Msa0373550-mRNA-1:exon:16361;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72597645 | 72597734 | 72597645 | ID=Msa0373550-mRNA-1:exon:16360;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72597837 | 72597920 | 72597837 | ID=Msa0373550-mRNA-1:exon:16359;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72598014 | 72598156 | 72598014 | ID=Msa0373550-mRNA-1:exon:16358;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72598265 | 72598362 | 72598265 | ID=Msa0373550-mRNA-1:exon:16357;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72598535 | 72598595 | 72598535 | ID=Msa0373550-mRNA-1:exon:16356;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72598690 | 72598836 | 72598690 | ID=Msa0373550-mRNA-1:exon:16355;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72599377 | 72599476 | 72599377 | ID=Msa0373550-mRNA-1:exon:16354;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72599580 | 72599695 | 72599580 | ID=Msa0373550-mRNA-1:exon:16353;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72599785 | 72599885 | 72599785 | ID=Msa0373550-mRNA-1:exon:16352;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72599982 | 72600014 | 72599982 | ID=Msa0373550-mRNA-1:exon:16351;Parent=Msa0373550-mRNA-1 |
| chr3_1 | exon | 72600105 | 72600173 | 72600105 | ID=Msa0373550-mRNA-1:exon:16350;Parent=Msa0373550-mRNA-1 |
| chr3_1 | five_prime_UTR | 72600109 | 72600173 | 72600109 | ID=Msa0373550-mRNA-1:five_prime_utr;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72600105 | 72600108 | 72600105 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72599982 | 72600014 | 72599982 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72599785 | 72599885 | 72599785 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72599580 | 72599695 | 72599580 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72599377 | 72599476 | 72599377 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72598690 | 72598836 | 72598690 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72598535 | 72598595 | 72598535 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72598265 | 72598362 | 72598265 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72598014 | 72598156 | 72598014 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72597837 | 72597920 | 72597837 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72597645 | 72597734 | 72597645 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | CDS | 72597492 | 72597537 | 72597492 | ID=Msa0373550-mRNA-1:cds;Parent=Msa0373550-mRNA-1 |
| chr3_1 | three_prime_UTR | 72597365 | 72597491 | 72597365 | ID=Msa0373550-mRNA-1:three_prime_utr;Parent=Msa0373550-mRNA-1 |
| chr3_1 | three_prime_UTR | 72597128 | 72597344 | 72597128 | ID=Msa0373550-mRNA-1:three_prime_utr;Parent=Msa0373550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
