Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973050 | XP_003607049.1 | 86.777 | 363 | 8 | 3 | 1 | 330 | 1 | 356 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973050 | G7JJU3 | 86.777 | 363 | 8 | 3 | 1 | 330 | 1 | 356 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038150 | Msa0973050 | 0.820060 | 8.372517e-53 | -8.615850e-47 |
| Msa0755480 | Msa0973050 | 0.807726 | 4.390266e-50 | -8.615850e-47 |
| Msa0827340 | Msa0973050 | 0.821794 | 3.339995e-53 | -8.615850e-47 |
| Msa0479890 | Msa0973050 | 0.809180 | 2.149590e-50 | -8.615850e-47 |
| Msa0523600 | Msa0973050 | 0.807885 | 4.062753e-50 | -8.615850e-47 |
| Msa0903570 | Msa0973050 | 0.869658 | 2.626304e-66 | -8.615850e-47 |
| Msa0973050 | Msa1072000 | 0.801109 | 1.051376e-48 | -8.615850e-47 |
| Msa0973050 | Msa1340540 | 0.806773 | 6.990333e-50 | -8.615850e-47 |
| Msa0973050 | Msa1381060 | 0.812269 | 4.615398e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973050 | MtrunA17_Chr6g0451961 | 86.777 | 363 | 8 | 3 | 1 | 330 | 1 | 356 | 0.0 | 588 |
| Msa0973050 | MtrunA17_Chr1g0207651 | 32.394 | 355 | 174 | 9 | 27 | 329 | 24 | 364 | 2.10e-43 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973050 | AT5G14970.1 | 47.354 | 378 | 128 | 12 | 1 | 330 | 1 | 355 | 1.50e-93 | 282 |
| Msa0973050 | AT2G14910.1 | 33.163 | 392 | 182 | 10 | 1 | 329 | 1 | 375 | 1.40e-44 | 157 |
| Msa0973050 | AT2G14910.2 | 31.165 | 369 | 174 | 10 | 1 | 306 | 1 | 352 | 2.59e-33 | 126 |
| Msa0973050 | AT1G63610.1 | 26.923 | 260 | 164 | 7 | 74 | 328 | 88 | 326 | 9.40e-14 | 71.6 |
Find 106 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTGGGGTTAGCGAATT+TGG | 0.145194 | 6_4:+5371958 | Msa0973050:CDS |
| GGAAGCTAGCTCTAACTTTA+TGG | 0.233045 | 6_4:+5373700 | Msa0973050:CDS |
| GAGAAGGTTGTTTCTGATTT+GGG | 0.261359 | 6_4:+5371944 | Msa0973050:CDS |
| TGAGAAGGTTGTTTCTGATT+TGG | 0.269725 | 6_4:+5371943 | Msa0973050:CDS |
| TGAAACACCTTTGGAGAGTT+TGG | 0.272428 | 6_4:+5371886 | Msa0973050:CDS |
| ATTGGCAGGTGTATGTTATT+AGG | 0.317981 | 6_4:+5374208 | Msa0973050:intron |
| CTTGTTTCTTCTATCATCAC+TGG | 0.342003 | 6_4:+5369760 | Msa0973050:CDS |
| GGGAGAGGATGGTGGAGAGA+TGG | 0.345658 | 6_4:-5369430 | None:intergenic |
| TACCGTACAAGGCTTATAAC+TGG | 0.362093 | 6_4:-5374377 | None:intergenic |
| AGAAGAGAGAGGGGAGAGGA+TGG | 0.375632 | 6_4:-5369441 | None:intergenic |
| GGAGAGGATGGTGGAGAGAT+GGG | 0.382331 | 6_4:-5369429 | None:intergenic |
| TGTGACATGCTTTAATGCTT+TGG | 0.385756 | 6_4:-5374498 | None:intergenic |
| GATGTCCTTGACGAGGAATC+TGG | 0.386448 | 6_4:+5371832 | Msa0973050:CDS |
| CTTTGGAGATTTGCCGCCTC+AGG | 0.387256 | 6_4:+5372012 | Msa0973050:CDS |
| ACACCAGTTCAATGTAAAAC+TGG | 0.389970 | 6_4:+5374405 | Msa0973050:three_prime_UTR |
| GAAATGTCACATGCGGATCA+AGG | 0.413539 | 6_4:+5371854 | Msa0973050:CDS |
| TTATTAGGTCATCACTTAAG+AGG | 0.413839 | 6_4:+5374223 | Msa0973050:CDS |
| ATCGTTGTTGTGTTATAAAG+AGG | 0.415993 | 6_4:-5369304 | None:intergenic |
| GGCGGATTGTGAAACACCTT+TGG | 0.422441 | 6_4:+5371877 | Msa0973050:CDS |
| AGATGGGTGAGATGGGTTGT+TGG | 0.427729 | 6_4:-5369413 | None:intergenic |
| CAAACTATTTCTACTATGCT+TGG | 0.427819 | 6_4:+5369673 | Msa0973050:CDS |
| GGTGGAGAGATGGGTGAGAT+GGG | 0.429966 | 6_4:-5369420 | None:intergenic |
| GTCTCCGTCAACGTGGTGGC+AGG | 0.465322 | 6_4:-5369515 | None:intergenic |
| TTGTTGTTCCTCTTCTTCCA+TGG | 0.466202 | 6_4:+5369345 | Msa0973050:exon |
| AGAAACACCTTTAGAGATAA+CGG | 0.473945 | 6_4:-5369626 | None:intergenic |
| AGGAAGAAGAGAGAGGGGAG+AGG | 0.474354 | 6_4:-5369445 | None:intergenic |
| TGGTGGAGAGATGGGTGAGA+TGG | 0.474629 | 6_4:-5369421 | None:intergenic |
| CTTATAACTGGTGTTATACA+AGG | 0.475909 | 6_4:-5374365 | None:intergenic |
| TTGCATTTGAGCTGTGTTGT+CGG | 0.482310 | 6_4:+5374259 | Msa0973050:CDS |
| TTTGGAGAGTTTGGAGGTGA+AGG | 0.488716 | 6_4:+5371895 | Msa0973050:CDS |
| AGAGAGAGGGGAGAGGATGG+TGG | 0.493829 | 6_4:-5369438 | None:intergenic |
| AGGTCATCACTTAAGAGGAT+TGG | 0.496502 | 6_4:+5374228 | Msa0973050:CDS |
| AAGGGTGGTGAAGAGGAACA+TGG | 0.497735 | 6_4:+5371914 | Msa0973050:CDS |
| CACTATGGAATGCAGAATAC+AGG | 0.499197 | 6_4:+5371810 | Msa0973050:CDS |
| ACATCCTGCCACCACGTTGA+CGG | 0.502069 | 6_4:+5369511 | Msa0973050:CDS |
| GTCAACGTGGTGGCAGGATG+TGG | 0.506655 | 6_4:-5369509 | None:intergenic |
| GCAGGATGTGGTGAAGAGAA+AGG | 0.507084 | 6_4:-5369497 | None:intergenic |
| GACGATGGGGATGACGGCGG+AGG | 0.515518 | 6_4:-5369465 | None:intergenic |
| TCGGCCGTCATCAGAGGAAG+TGG | 0.517662 | 6_4:+5373625 | Msa0973050:CDS |
| AGGGTGGTGAAGAGGAACAT+GGG | 0.520509 | 6_4:+5371915 | Msa0973050:CDS |
| GATAACTCCGTTATCTCTAA+AGG | 0.520590 | 6_4:+5369619 | Msa0973050:CDS |
| AAAGGGTCGACGGTGACGAT+GGG | 0.521309 | 6_4:-5369479 | None:intergenic |
| TTGAGATTCAACCTCTTCAT+CGG | 0.522451 | 6_4:+5369734 | Msa0973050:CDS |
| CGGCGGAGGAAGAAGAGAGA+GGG | 0.526127 | 6_4:-5369451 | None:intergenic |
| GACGGTGACGATGGGGATGA+CGG | 0.526158 | 6_4:-5369471 | None:intergenic |
| CAATGTAAAACTGGAAGTGT+GGG | 0.530848 | 6_4:+5374414 | Msa0973050:three_prime_UTR |
| GGTGATGCGTGAGAGGATGA+AGG | 0.535643 | 6_4:-5369392 | None:intergenic |
| AAATGTCACATGCGGATCAA+GGG | 0.539240 | 6_4:+5371855 | Msa0973050:CDS |
| ATAAGCTAAGGTAAAGGCTA+AGG | 0.540160 | 6_4:+5369273 | Msa0973050:five_prime_UTR |
| GGAGGTGAAGGGTGGTGAAG+AGG | 0.541144 | 6_4:+5371907 | Msa0973050:CDS |
| GAGAAGAAGTTCTAAAAGCA+AGG | 0.541887 | 6_4:-5374454 | None:intergenic |
| GGTTGTTGGTGATGCGTGAG+AGG | 0.550045 | 6_4:-5369399 | None:intergenic |
| TATAACTGGTGTTATACAAG+GGG | 0.551015 | 6_4:-5374363 | None:intergenic |
| TCAATGTAAAACTGGAAGTG+TGG | 0.551448 | 6_4:+5374413 | Msa0973050:three_prime_UTR |
| GACTATCACCAGGACGATGA+TGG | 0.551535 | 6_4:+5373746 | Msa0973050:CDS |
| TTGGAGAGTTTGGAGGTGAA+GGG | 0.552664 | 6_4:+5371896 | Msa0973050:CDS |
| AGAAGGTTGTTTCTGATTTG+GGG | 0.556586 | 6_4:+5371945 | Msa0973050:CDS |
| TTGTTTCTTCTATCATCACT+GGG | 0.557906 | 6_4:+5369761 | Msa0973050:CDS |
| TTTATAGAGAATAATAATGG+TGG | 0.558374 | 6_4:+5374285 | Msa0973050:exon |
| TCCTCCACTTCCTCTGATGA+CGG | 0.560560 | 6_4:-5373629 | None:intergenic |
| GAGAGTTTGGAGGTGAAGGG+TGG | 0.560667 | 6_4:+5371899 | Msa0973050:CDS |
| ACCAGAAAAGCAACTTTGCT+AGG | 0.561251 | 6_4:-5373808 | None:intergenic |
| GAAACAAGTAACCGATGAAG+AGG | 0.564989 | 6_4:-5369745 | None:intergenic |
| AACACCTTTGGAGAGTTTGG+AGG | 0.566689 | 6_4:+5371889 | Msa0973050:CDS |
| CAGGATGTGGTGAAGAGAAA+GGG | 0.572257 | 6_4:-5369496 | None:intergenic |
| GAAAGGGTCGACGGTGACGA+TGG | 0.573387 | 6_4:-5369480 | None:intergenic |
| ACTCATCACCATCATCGTCC+TGG | 0.573711 | 6_4:-5373754 | None:intergenic |
| TGCAGCAGCAGTAGTCGCGC+GGG | 0.576095 | 6_4:+5371986 | Msa0973050:CDS |
| GTAACATCAAAATGATCAGA+AGG | 0.580361 | 6_4:-5369703 | None:intergenic |
| TTGCAGCAGCAGTAGTCGCG+CGG | 0.586832 | 6_4:+5371985 | Msa0973050:CDS |
| GATAGGTGACTGAAATGTCT+CGG | 0.586884 | 6_4:+5373606 | Msa0973050:intron |
| TGAAATTGTTGATGCTGCCA+TGG | 0.587458 | 6_4:-5369362 | None:intergenic |
| GGCGGAGGAAGAAGAGAGAG+GGG | 0.602193 | 6_4:-5369450 | None:intergenic |
| GTCTGAGTTGACAAACATGA+AGG | 0.606464 | 6_4:+5372060 | Msa0973050:CDS |
| CACCAGTTATAAGCCTTGTA+CGG | 0.606516 | 6_4:+5374375 | Msa0973050:three_prime_UTR |
| TGCTAGGTAATCGCGAGAAG+TGG | 0.609297 | 6_4:-5373792 | None:intergenic |
| AATGTCTCGGCCGTCATCAG+AGG | 0.610274 | 6_4:+5373619 | Msa0973050:CDS |
| TAGATATCACTGTGAAGCCA+CGG | 0.611648 | 6_4:-5369570 | None:intergenic |
| TTCACCTCCAAACTCTCCAA+AGG | 0.618065 | 6_4:-5371893 | None:intergenic |
| AATGTCACATGCGGATCAAG+GGG | 0.619045 | 6_4:+5371856 | Msa0973050:CDS |
| GTGATGCGTGAGAGGATGAA+GGG | 0.624710 | 6_4:-5369391 | None:intergenic |
| TAGAGCTAGCTTCCTCGACA+AGG | 0.624862 | 6_4:-5373691 | None:intergenic |
| GAGATAACGGAGTTATCGAG+AGG | 0.629687 | 6_4:-5369613 | None:intergenic |
| ACGGCGGAGGAAGAAGAGAG+AGG | 0.631341 | 6_4:-5369452 | None:intergenic |
| TGGTGAAGAGAAAGGGTCGA+CGG | 0.631937 | 6_4:-5369489 | None:intergenic |
| GTCACATGCGGATCAAGGGG+CGG | 0.635815 | 6_4:+5371859 | Msa0973050:CDS |
| TTTATGGAACAATCAGTCGA+AGG | 0.638089 | 6_4:+5373716 | Msa0973050:CDS |
| GGAACATGGGGAAACTGAGA+AGG | 0.640390 | 6_4:+5371928 | Msa0973050:CDS |
| TTATAACTGGTGTTATACAA+GGG | 0.641000 | 6_4:-5374364 | None:intergenic |
| GGGTGGTGAAGAGGAACATG+GGG | 0.644636 | 6_4:+5371916 | Msa0973050:CDS |
| TGATGCTGCCATGGAAGAAG+AGG | 0.645857 | 6_4:-5369353 | None:intergenic |
| TTTGAGAAGATTCCTTGTCG+AGG | 0.647364 | 6_4:+5373679 | Msa0973050:CDS |
| AAGGGTCGACGGTGACGATG+GGG | 0.647659 | 6_4:-5369478 | None:intergenic |
| GCCGTCATCAGAGGAAGTGG+AGG | 0.649197 | 6_4:+5373628 | Msa0973050:CDS |
| CATTTCCAGATTCCTCGTCA+AGG | 0.649722 | 6_4:-5371837 | None:intergenic |
| GGTGACGATGGGGATGACGG+CGG | 0.665880 | 6_4:-5369468 | None:intergenic |
| GAATCTGGAAATGTCACATG+CGG | 0.666921 | 6_4:+5371847 | Msa0973050:CDS |
| TGAATGTATTTCAGAGCCTG+AGG | 0.668987 | 6_4:-5372028 | None:intergenic |
| ATGTATTTCAGAGCCTGAGG+CGG | 0.676018 | 6_4:-5372025 | None:intergenic |
| CGTAAATCAACGTTCAACCG+TGG | 0.677897 | 6_4:+5369553 | Msa0973050:CDS |
| TGAGTTGACAAACATGAAGG+AGG | 0.679770 | 6_4:+5372063 | Msa0973050:CDS |
| CAACGTCGTCTCCGTCAACG+TGG | 0.687491 | 6_4:-5369522 | None:intergenic |
| CGTCGTCTCCGTCAACGTGG+TGG | 0.693744 | 6_4:-5369519 | None:intergenic |
| AGGAAACATAGACTATCACC+AGG | 0.693889 | 6_4:+5373736 | Msa0973050:CDS |
| AATACAGGATGTCCTTGACG+AGG | 0.724418 | 6_4:+5371825 | Msa0973050:CDS |
| ATAACTGGTGTTATACAAGG+GGG | 0.729779 | 6_4:-5374362 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAATTATAGAAAATTG+AGG | - | chr6_4:5369807-5369826 | None:intergenic | 15.0% |
| !!! | GTTGACAATATAAATTATTT+TGG | - | chr6_4:5370662-5370681 | None:intergenic | 15.0% |
| !! | TTATGAATTTAGCATTATAT+TGG | + | chr6_4:5370750-5370769 | Msa0973050:intron | 15.0% |
| !! | ATAAACTTAAAATTCAATCA+AGG | - | chr6_4:5372196-5372215 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAGTTTATGTAT+CGG | + | chr6_4:5372200-5372219 | Msa0973050:intron | 15.0% |
| !! | TCACAAATTTACAAAATAAA+CGG | - | chr6_4:5372773-5372792 | None:intergenic | 15.0% |
| !!! | ACTTTTATAGAGAATAATAA+TGG | + | chr6_4:5374282-5374301 | Msa0973050:exon | 15.0% |
| !! | AAATTATAGAAAATTGAGGT+AGG | - | chr6_4:5369803-5369822 | None:intergenic | 20.0% |
| !! | ACATAATTGAATGTAATCAT+TGG | - | chr6_4:5369971-5369990 | None:intergenic | 20.0% |
| !!! | TCATTTTGTCGAATTATTAT+CGG | + | chr6_4:5369990-5370009 | Msa0973050:intron | 20.0% |
| !! | TCATTCTGTCAAATTATTAT+CGG | + | chr6_4:5370202-5370221 | Msa0973050:intron | 20.0% |
| !! | TATTTGATAAATCTCAAAGT+TGG | + | chr6_4:5371260-5371279 | Msa0973050:intron | 20.0% |
| !!! | AACTGAATTTTACAAAATCA+GGG | + | chr6_4:5371323-5371342 | Msa0973050:intron | 20.0% |
| !! | GTGACAACTTAATATAAATA+GGG | - | chr6_4:5371557-5371576 | None:intergenic | 20.0% |
| !!! | GAAATTGATAAGTTTTGAAT+TGG | + | chr6_4:5371763-5371782 | Msa0973050:intron | 20.0% |
| !!! | TGCAATATTTTATTATTCCA+AGG | + | chr6_4:5372165-5372184 | Msa0973050:intron | 20.0% |
| !!! | AATATTTTATTATTCCAAGG+AGG | + | chr6_4:5372168-5372187 | Msa0973050:intron | 20.0% |
| !!! | GAATTTTAAGTTTATGTATC+GGG | + | chr6_4:5372201-5372220 | Msa0973050:intron | 20.0% |
| !!! | AATAATAACCTTCAAGTTAT+CGG | - | chr6_4:5372588-5372607 | None:intergenic | 20.0% |
| !!! | GAATAATTTGTTTGAAAGAA+TGG | - | chr6_4:5372707-5372726 | None:intergenic | 20.0% |
| !!! | TTATTCTTTGTTGTTTGTAT+TGG | + | chr6_4:5372721-5372740 | Msa0973050:intron | 20.0% |
| !!! | TATTCTTTGTTGTTTGTATT+GGG | + | chr6_4:5372722-5372741 | Msa0973050:intron | 20.0% |
| !!! | TAGCTTATTTCTATTTGTTA+AGG | + | chr6_4:5373541-5373560 | Msa0973050:intron | 20.0% |
| !!! | TCAAAATATTTTGAACAAGT+TGG | - | chr6_4:5373664-5373683 | None:intergenic | 20.0% |
| !!! | TTAGAATTTTGTTGATTTCA+AGG | + | chr6_4:5374082-5374101 | Msa0973050:intron | 20.0% |
| !! | ACATGATTAAACACAATAAA+CGG | - | chr6_4:5374181-5374200 | None:intergenic | 20.0% |
| !! | TTTATAGAGAATAATAATGG+TGG | + | chr6_4:5374285-5374304 | Msa0973050:exon | 20.0% |
| !!! | GCTTATGTTTTTGTTTTGTT+GGG | - | chr6_4:5369259-5369278 | None:intergenic | 25.0% |
| !!! | AGCTTATGTTTTTGTTTTGT+TGG | - | chr6_4:5369260-5369279 | None:intergenic | 25.0% |
| ! | CAAAACAAAAACATAAGCTA+AGG | + | chr6_4:5369261-5369280 | Msa0973050:five_prime_UTR | 25.0% |
| ! | AAAAACATAAGCTAAGGTAA+AGG | + | chr6_4:5369267-5369286 | Msa0973050:five_prime_UTR | 25.0% |
| ! | AAGACACATTTCTATCAAAA+GGG | - | chr6_4:5369932-5369951 | None:intergenic | 25.0% |
| ! | TTATCAATTATGTGTGTGTT+TGG | + | chr6_4:5370080-5370099 | Msa0973050:intron | 25.0% |
| ! | AATACTTCGACAAACAAAAA+TGG | - | chr6_4:5370407-5370426 | None:intergenic | 25.0% |
| !! | TTTGTTTGTCGAAGTATTAT+CGG | + | chr6_4:5370409-5370428 | Msa0973050:intron | 25.0% |
| ! | AATTTGAGAGTGACAATAAT+TGG | + | chr6_4:5370586-5370605 | Msa0973050:intron | 25.0% |
| ! | AATTTAGCACTCAAAACATT+AGG | + | chr6_4:5371075-5371094 | Msa0973050:intron | 25.0% |
| ! | ATTTAGCACTCAAAACATTA+GGG | + | chr6_4:5371076-5371095 | Msa0973050:intron | 25.0% |
| ! | AAGATATTATCGCCAAATTA+AGG | + | chr6_4:5371136-5371155 | Msa0973050:intron | 25.0% |
| !! | CAAAATATGAAGTTGGTTAT+CGG | + | chr6_4:5371175-5371194 | Msa0973050:intron | 25.0% |
| !! | GAACTGAATTTTACAAAATC+AGG | + | chr6_4:5371322-5371341 | Msa0973050:intron | 25.0% |
| !! | ACTGAATTTTACAAAATCAG+GGG | + | chr6_4:5371324-5371343 | Msa0973050:intron | 25.0% |
| ! | CAACTTAATATAAATAGGGA+CGG | - | chr6_4:5371553-5371572 | None:intergenic | 25.0% |
| ! | GGTGACAACTTAATATAAAT+AGG | - | chr6_4:5371558-5371577 | None:intergenic | 25.0% |
| !!! | GCAATATTTTGAAGTTTTAG+AGG | + | chr6_4:5371658-5371677 | Msa0973050:intron | 25.0% |
| !!! | GCTCTATTTTTGTTACTAAT+TGG | + | chr6_4:5371702-5371721 | Msa0973050:intron | 25.0% |
| !!! | TTTTGTTACTAATTGGTTTC+TGG | + | chr6_4:5371709-5371728 | Msa0973050:intron | 25.0% |
| ! | ATAAAAAGTTTCACAACCAT+AGG | - | chr6_4:5372236-5372255 | None:intergenic | 25.0% |
| !! | ATGGTTGTGAAACTTTTTAT+CGG | + | chr6_4:5372236-5372255 | Msa0973050:intron | 25.0% |
| ! | TAAACTCAAATTACTATCAG+TGG | - | chr6_4:5372269-5372288 | None:intergenic | 25.0% |
| ! | AGAACTATGTTTGTTTCAAT+CGG | + | chr6_4:5372303-5372322 | Msa0973050:intron | 25.0% |
| !! | GACATTTTTACTTTATGACA+TGG | - | chr6_4:5372351-5372370 | None:intergenic | 25.0% |
| ! | GTTATTATTGTGAGAAACAA+AGG | + | chr6_4:5372599-5372618 | Msa0973050:intron | 25.0% |
| ! | TTGTAAATTTGTGAAAAGTG+AGG | + | chr6_4:5372779-5372798 | Msa0973050:intron | 25.0% |
| ! | ATTGACATATAACTAGTAAG+AGG | - | chr6_4:5372892-5372911 | None:intergenic | 25.0% |
| ! | AATGAATGCATCAAAAGAAA+TGG | + | chr6_4:5373083-5373102 | Msa0973050:intron | 25.0% |
| ! | TTACTCATAGACTGTTTAAA+AGG | + | chr6_4:5373111-5373130 | Msa0973050:intron | 25.0% |
| !!! | GACAATGTTTATTTTCTTTC+AGG | + | chr6_4:5373161-5373180 | Msa0973050:intron | 25.0% |
| !! | AACTAAGTATTGTGAAATAG+CGG | + | chr6_4:5373322-5373341 | Msa0973050:intron | 25.0% |
| ! | AAAAGCAAAATCTGTTGTAA+GGG | - | chr6_4:5373855-5373874 | None:intergenic | 25.0% |
| ! | AAAAAGCAAAATCTGTTGTA+AGG | - | chr6_4:5373856-5373875 | None:intergenic | 25.0% |
| ! | TGATCCATGAAATTGAAAAA+TGG | + | chr6_4:5373977-5373996 | Msa0973050:intron | 25.0% |
| !!! | TAGACCATTTTTCAATTTCA+TGG | - | chr6_4:5373984-5374003 | None:intergenic | 25.0% |
| ! | AAATTGAAAAATGGTCTAAC+CGG | + | chr6_4:5373986-5374005 | Msa0973050:intron | 25.0% |
| ! | ATTTAGTCTCTATATCATTC+CGG | - | chr6_4:5374008-5374027 | None:intergenic | 25.0% |
| ! | AATTTGGTCCATGAAATTAT+AGG | - | chr6_4:5374122-5374141 | None:intergenic | 25.0% |
| ! | TTTAATCATGTTCTTTCCAT+TGG | + | chr6_4:5374190-5374209 | Msa0973050:intron | 25.0% |
| ! | AAAAAGAGGAAGAATATACA+AGG | - | chr6_4:5374314-5374333 | None:intergenic | 25.0% |
| !!! | TTATAACTGGTGTTATACAA+GGG | - | chr6_4:5374367-5374386 | None:intergenic | 25.0% |
| !!! | CATGTCACATTTTAAGAATA+TGG | + | chr6_4:5374512-5374531 | Msa0973050:three_prime_UTR | 25.0% |
| ATCGTTGTTGTGTTATAAAG+AGG | - | chr6_4:5369307-5369326 | None:intergenic | 30.0% | |
| ! | AGAAACACCTTTAGAGATAA+CGG | - | chr6_4:5369629-5369648 | None:intergenic | 30.0% |
| !! | CAAACTATTTCTACTATGCT+TGG | + | chr6_4:5369673-5369692 | Msa0973050:CDS | 30.0% |
| GTAACATCAAAATGATCAGA+AGG | - | chr6_4:5369706-5369725 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTCTATCATCACT+GGG | + | chr6_4:5369761-5369780 | Msa0973050:CDS | 30.0% |
| CAAGACACATTTCTATCAAA+AGG | - | chr6_4:5369933-5369952 | None:intergenic | 30.0% | |
| CTATTAATTACGTGTGTGTT+TGG | + | chr6_4:5370290-5370309 | Msa0973050:intron | 30.0% | |
| GGATTGTGTAAATTTGACTA+TGG | + | chr6_4:5370494-5370513 | Msa0973050:intron | 30.0% | |
| TTATATTGGTGTGATTCAAG+TGG | + | chr6_4:5370764-5370783 | Msa0973050:intron | 30.0% | |
| !! | GGATGTTTTTAATTGTGCTT+TGG | + | chr6_4:5370829-5370848 | Msa0973050:intron | 30.0% |
| !!! | TGTAGTGATTAGTTTTGTAG+TGG | + | chr6_4:5370857-5370876 | Msa0973050:intron | 30.0% |
| ! | CTCTCAATTTAGAACCAAAT+TGG | + | chr6_4:5370909-5370928 | Msa0973050:intron | 30.0% |
| !!! | TGTTGTTTTTAATTGTGCTC+TGG | + | chr6_4:5370989-5371008 | Msa0973050:intron | 30.0% |
| ! | TTACGTTTAGCATTTGAGTT+TGG | + | chr6_4:5371025-5371044 | Msa0973050:intron | 30.0% |
| AGGTATCCAAAATATGAAGT+TGG | + | chr6_4:5371168-5371187 | Msa0973050:intron | 30.0% | |
| ! | CGATAACCAACTTCATATTT+TGG | - | chr6_4:5371177-5371196 | None:intergenic | 30.0% |
| TTGTAAAATTCAGTTCCAAC+CGG | - | chr6_4:5371318-5371337 | None:intergenic | 30.0% | |
| !!! | AGTTTTAGAGGATTAATGTG+AGG | + | chr6_4:5371670-5371689 | Msa0973050:intron | 30.0% |
| !!! | GTTTTAGAGGATTAATGTGA+GGG | + | chr6_4:5371671-5371690 | Msa0973050:intron | 30.0% |
| TCAATATCATCCATAACAGA+TGG | - | chr6_4:5372459-5372478 | None:intergenic | 30.0% | |
| ATAATATCCTAAACACGCTT+AGG | + | chr6_4:5372930-5372949 | Msa0973050:intron | 30.0% | |
| TAATATCCTAAACACGCTTA+GGG | + | chr6_4:5372931-5372950 | Msa0973050:intron | 30.0% | |
| ! | TAAACATGTGCACAAGTTTT+TGG | + | chr6_4:5373035-5373054 | Msa0973050:intron | 30.0% |
| TTGTACTAAAAAACGTATCG+TGG | - | chr6_4:5373395-5373414 | None:intergenic | 30.0% | |
| ! | AATCAAGTTGCAATTGAAAG+TGG | + | chr6_4:5373506-5373525 | Msa0973050:intron | 30.0% |
| GATATAGAGACTAAATGAAC+CGG | + | chr6_4:5374012-5374031 | Msa0973050:intron | 30.0% | |
| ! | GGACATTAATCTTTTTGAAC+CGG | - | chr6_4:5374034-5374053 | None:intergenic | 30.0% |
| ! | TCTGAAATTGAAAATTCGCA+AGG | - | chr6_4:5374055-5374074 | None:intergenic | 30.0% |
| ACATGCTATAAAAAAGAGCT+CGG | - | chr6_4:5374154-5374173 | None:intergenic | 30.0% | |
| TTATTAGGTCATCACTTAAG+AGG | + | chr6_4:5374223-5374242 | Msa0973050:CDS | 30.0% | |
| !! | TATAACTGGTGTTATACAAG+GGG | - | chr6_4:5374366-5374385 | None:intergenic | 30.0% |
| !! | CTTATAACTGGTGTTATACA+AGG | - | chr6_4:5374368-5374387 | None:intergenic | 30.0% |
| !! | GTCACATTTTAAGAATATGG+TGG | + | chr6_4:5374515-5374534 | Msa0973050:three_prime_UTR | 30.0% |
| ATAAGCTAAGGTAAAGGCTA+AGG | + | chr6_4:5369273-5369292 | Msa0973050:five_prime_UTR | 35.0% | |
| GATAACTCCGTTATCTCTAA+AGG | + | chr6_4:5369619-5369638 | Msa0973050:CDS | 35.0% | |
| TTGAGATTCAACCTCTTCAT+CGG | + | chr6_4:5369734-5369753 | Msa0973050:CDS | 35.0% | |
| ! | CTTGTTTCTTCTATCATCAC+TGG | + | chr6_4:5369760-5369779 | Msa0973050:CDS | 35.0% |
| ATTGTAATCAATCCTGTGTG+TGG | + | chr6_4:5369863-5369882 | Msa0973050:intron | 35.0% | |
| !! | TCTATCAGAAAGTGTCCTTT+CGG | - | chr6_4:5370116-5370135 | None:intergenic | 35.0% |
| AAAGGACACTTTCTGATAGA+AGG | + | chr6_4:5370116-5370135 | Msa0973050:intron | 35.0% | |
| TTAGAGATTCGTAGATTGAG+TGG | + | chr6_4:5370469-5370488 | Msa0973050:intron | 35.0% | |
| GAGTGACAATAATTGGATGA+TGG | + | chr6_4:5370593-5370612 | Msa0973050:intron | 35.0% | |
| TACTTAGCCAACAAAACTTC+AGG | + | chr6_4:5370617-5370636 | Msa0973050:intron | 35.0% | |
| ! | TTTTGGTCAACACATCACTA+CGG | - | chr6_4:5370645-5370664 | None:intergenic | 35.0% |
| ATGTTCGAACTCTAATCACA+GGG | - | chr6_4:5370801-5370820 | None:intergenic | 35.0% | |
| AATGTTCGAACTCTAATCAC+AGG | - | chr6_4:5370802-5370821 | None:intergenic | 35.0% | |
| TGTGATTAGAGTTCGAACAT+TGG | + | chr6_4:5370801-5370820 | Msa0973050:intron | 35.0% | |
| GTGATTAGAGTTCGAACATT+GGG | + | chr6_4:5370802-5370821 | Msa0973050:intron | 35.0% | |
| !!! | ATTAGTTTTGTAGTGGAGTG+TGG | + | chr6_4:5370864-5370883 | Msa0973050:intron | 35.0% |
| AACTAGAGTCGTATGTGATT+AGG | + | chr6_4:5370947-5370966 | Msa0973050:intron | 35.0% | |
| !! | CCTTAAAGAGCACCTTAATT+TGG | - | chr6_4:5371151-5371170 | None:intergenic | 35.0% |
| ! | CCAAATTAAGGTGCTCTTTA+AGG | + | chr6_4:5371148-5371167 | Msa0973050:intron | 35.0% |
| AATGGTTGATTAAGGAAGCT+AGG | + | chr6_4:5371204-5371223 | Msa0973050:intron | 35.0% | |
| !! | AGTAAGTTCTGAAATTGGAG+AGG | + | chr6_4:5371348-5371367 | Msa0973050:intron | 35.0% |
| !! | GTAAGTTCTGAAATTGGAGA+GGG | + | chr6_4:5371349-5371368 | Msa0973050:intron | 35.0% |
| !! | TTTGCGCTTTTGAAAGATTG+AGG | + | chr6_4:5371622-5371641 | Msa0973050:intron | 35.0% |
| ! | TTGTGCGAAGATGATGTTTT+TGG | + | chr6_4:5371736-5371755 | Msa0973050:intron | 35.0% |
| ! | TGTGCGAAGATGATGTTTTT+GGG | + | chr6_4:5371737-5371756 | Msa0973050:intron | 35.0% |
| ! | TTTTCGTTAGGTACACACTA+TGG | + | chr6_4:5371795-5371814 | Msa0973050:intron | 35.0% |
| !! | TGAGAAGGTTGTTTCTGATT+TGG | + | chr6_4:5371943-5371962 | Msa0973050:CDS | 35.0% |
| !! | GAGAAGGTTGTTTCTGATTT+GGG | + | chr6_4:5371944-5371963 | Msa0973050:CDS | 35.0% |
| !! | AGAAGGTTGTTTCTGATTTG+GGG | + | chr6_4:5371945-5371964 | Msa0973050:CDS | 35.0% |
| AGAATTATTGACAATCGCTG+TGG | - | chr6_4:5372429-5372448 | None:intergenic | 35.0% | |
| ATGAACAACCGATAACTTGA+AGG | + | chr6_4:5372577-5372596 | Msa0973050:intron | 35.0% | |
| AGTACACCTATAAAAGCCTA+AGG | + | chr6_4:5372971-5372990 | Msa0973050:intron | 35.0% | |
| TTTGGAAGAGATTGTGACAA+TGG | + | chr6_4:5373053-5373072 | Msa0973050:intron | 35.0% | |
| TTTATGGAACAATCAGTCGA+AGG | + | chr6_4:5373716-5373735 | Msa0973050:CDS | 35.0% | |
| !! | GTCTCTGAAATTGTAAGAGT+CGG | + | chr6_4:5373928-5373947 | Msa0973050:intron | 35.0% |
| TTGCGATGCCTATAATTTCA+TGG | + | chr6_4:5374111-5374130 | Msa0973050:intron | 35.0% | |
| AGCTCGGTAAATTGTCAATT+TGG | - | chr6_4:5374138-5374157 | None:intergenic | 35.0% | |
| TAATAACATACACCTGCCAA+TGG | - | chr6_4:5374209-5374228 | None:intergenic | 35.0% | |
| ATTGGCAGGTGTATGTTATT+AGG | + | chr6_4:5374208-5374227 | Msa0973050:intron | 35.0% | |
| TTATACAAGGGGGAAAAATG+GGG | - | chr6_4:5374355-5374374 | None:intergenic | 35.0% | |
| GTTATACAAGGGGGAAAAAT+GGG | - | chr6_4:5374356-5374375 | None:intergenic | 35.0% | |
| TGTTATACAAGGGGGAAAAA+TGG | - | chr6_4:5374357-5374376 | None:intergenic | 35.0% | |
| !! | ATAACTGGTGTTATACAAGG+GGG | - | chr6_4:5374365-5374384 | None:intergenic | 35.0% |
| !!! | TGGTGTTTTTTTACCGTACA+AGG | - | chr6_4:5374391-5374410 | None:intergenic | 35.0% |
| ACACCAGTTCAATGTAAAAC+TGG | + | chr6_4:5374405-5374424 | Msa0973050:three_prime_UTR | 35.0% | |
| ! | CTTCCAGTTTTACATTGAAC+TGG | - | chr6_4:5374411-5374430 | None:intergenic | 35.0% |
| TCAATGTAAAACTGGAAGTG+TGG | + | chr6_4:5374413-5374432 | Msa0973050:three_prime_UTR | 35.0% | |
| ! | CAATGTAAAACTGGAAGTGT+GGG | + | chr6_4:5374414-5374433 | Msa0973050:three_prime_UTR | 35.0% |
| !! | GAGAAGAAGTTCTAAAAGCA+AGG | - | chr6_4:5374457-5374476 | None:intergenic | 35.0% |
| TGTGACATGCTTTAATGCTT+TGG | - | chr6_4:5374501-5374520 | None:intergenic | 35.0% | |
| ! | TTGTTGTTCCTCTTCTTCCA+TGG | + | chr6_4:5369345-5369364 | Msa0973050:exon | 40.0% |
| TGAAATTGTTGATGCTGCCA+TGG | - | chr6_4:5369365-5369384 | None:intergenic | 40.0% | |
| TAGATATCACTGTGAAGCCA+CGG | - | chr6_4:5369573-5369592 | None:intergenic | 40.0% | |
| GAAACAAGTAACCGATGAAG+AGG | - | chr6_4:5369748-5369767 | None:intergenic | 40.0% | |
| ATAATCGTAGAACCACACAC+AGG | - | chr6_4:5369878-5369897 | None:intergenic | 40.0% | |
| !! | GTAATCATTGGTGTCAGTGT+TGG | - | chr6_4:5369959-5369978 | None:intergenic | 40.0% |
| !! | TTTGGTTCTGTAGTACCGAA+AGG | + | chr6_4:5370098-5370117 | Msa0973050:intron | 40.0% |
| !! | TGTGTTTGGTTCTGTAGTAC+TGG | + | chr6_4:5370094-5370113 | Msa0973050:intron | 40.0% |
| !! | TTTGGTTCTGTAGTACTGGA+AGG | + | chr6_4:5370308-5370327 | Msa0973050:intron | 40.0% |
| ! | TTGTCGAAGTATTATCGGTG+TGG | + | chr6_4:5370414-5370433 | Msa0973050:intron | 40.0% |
| CGAATCTCTAACACAAACAC+CGG | - | chr6_4:5370460-5370479 | None:intergenic | 40.0% | |
| AGATTCGTAGATTGAGTGGA+TGG | + | chr6_4:5370473-5370492 | Msa0973050:intron | 40.0% | |
| !! | TACGGTACCTGAAGTTTTGT+TGG | - | chr6_4:5370627-5370646 | None:intergenic | 40.0% |
| GAACCAAATTGGTGTAGTTC+AGG | + | chr6_4:5370920-5370939 | Msa0973050:intron | 40.0% | |
| TAGAGTCGTATGTGATTAGG+AGG | + | chr6_4:5370950-5370969 | Msa0973050:intron | 40.0% | |
| TGATTAGGAGGTCGAACATT+TGG | + | chr6_4:5370962-5370981 | Msa0973050:intron | 40.0% | |
| GGTGCACAAATGGTTGATTA+AGG | + | chr6_4:5371196-5371215 | Msa0973050:intron | 40.0% | |
| !! | GGGGAAGTAAGTTCTGAAAT+TGG | + | chr6_4:5371343-5371362 | Msa0973050:intron | 40.0% |
| GGGTTATGCAAAACATCCTA+CGG | + | chr6_4:5371422-5371441 | Msa0973050:intron | 40.0% | |
| !!! | TGCACCAGTACAGCATTTTT+TGG | + | chr6_4:5371508-5371527 | Msa0973050:intron | 40.0% |
| !!! | ACCAGTACAGCATTTTTTGG+TGG | + | chr6_4:5371511-5371530 | Msa0973050:intron | 40.0% |
| ACCACCAAAAAATGCTGTAC+TGG | - | chr6_4:5371515-5371534 | None:intergenic | 40.0% | |
| TTAGAGGATTAATGTGAGGG+TGG | + | chr6_4:5371674-5371693 | Msa0973050:intron | 40.0% | |
| !!! | TGGTTGTTGCTGTTTTCGTT+AGG | + | chr6_4:5371783-5371802 | Msa0973050:intron | 40.0% |
| CACTATGGAATGCAGAATAC+AGG | + | chr6_4:5371810-5371829 | Msa0973050:CDS | 40.0% | |
| GAATCTGGAAATGTCACATG+CGG | + | chr6_4:5371847-5371866 | Msa0973050:CDS | 40.0% | |
| AAATGTCACATGCGGATCAA+GGG | + | chr6_4:5371855-5371874 | Msa0973050:CDS | 40.0% | |
| ! | TGAAACACCTTTGGAGAGTT+TGG | + | chr6_4:5371886-5371905 | Msa0973050:CDS | 40.0% |
| ! | TGATTTGGGGTTAGCGAATT+TGG | + | chr6_4:5371958-5371977 | Msa0973050:CDS | 40.0% |
| TGAATGTATTTCAGAGCCTG+AGG | - | chr6_4:5372031-5372050 | None:intergenic | 40.0% | |
| ! | GTCTGAGTTGACAAACATGA+AGG | + | chr6_4:5372060-5372079 | Msa0973050:CDS | 40.0% |
| ! | TGAGTTGACAAACATGAAGG+AGG | + | chr6_4:5372063-5372082 | Msa0973050:CDS | 40.0% |
| ! | AGTTCGCGTTTTTGTTGCTA+TGG | + | chr6_4:5372112-5372131 | Msa0973050:intron | 40.0% |
| ! | TTCAATCGGTGTTTCGATTG+TGG | + | chr6_4:5372317-5372336 | Msa0973050:intron | 40.0% |
| ! | ATGGATGATATTGACTACGC+TGG | + | chr6_4:5372465-5372484 | Msa0973050:intron | 40.0% |
| ! | TGATATTGACTACGCTGGTT+TGG | + | chr6_4:5372470-5372489 | Msa0973050:intron | 40.0% |
| !! | GATATTGACTACGCTGGTTT+GGG | + | chr6_4:5372471-5372490 | Msa0973050:intron | 40.0% |
| TTGAAGGAGTTAGGTGGAAA+AGG | + | chr6_4:5372494-5372513 | Msa0973050:intron | 40.0% | |
| AGCATAGAGATGGAAAGAGA+TGG | - | chr6_4:5372644-5372663 | None:intergenic | 40.0% | |
| ACACCTATAAAAGCCTAAGG+AGG | + | chr6_4:5372974-5372993 | Msa0973050:intron | 40.0% | |
| CACCTATAAAAGCCTAAGGA+GGG | + | chr6_4:5372975-5372994 | Msa0973050:intron | 40.0% | |
| ACCTATAAAAGCCTAAGGAG+GGG | + | chr6_4:5372976-5372995 | Msa0973050:intron | 40.0% | |
| TTGCATCATTTCCTGCTTCT+GGG | - | chr6_4:5373196-5373215 | None:intergenic | 40.0% | |
| ATTGCATCATTTCCTGCTTC+TGG | - | chr6_4:5373197-5373216 | None:intergenic | 40.0% | |
| !!! | CTGCTATTTTTCTCAATCCG+CGG | + | chr6_4:5373469-5373488 | Msa0973050:intron | 40.0% |
| ATTTACAGTGTTGTCAACCG+CGG | - | chr6_4:5373489-5373508 | None:intergenic | 40.0% | |
| ATCACACTGCATGTCTTGAT+AGG | + | chr6_4:5373589-5373608 | Msa0973050:intron | 40.0% | |
| GATAGGTGACTGAAATGTCT+CGG | + | chr6_4:5373606-5373625 | Msa0973050:intron | 40.0% | |
| TTTGAGAAGATTCCTTGTCG+AGG | + | chr6_4:5373679-5373698 | Msa0973050:CDS | 40.0% | |
| !! | GGAAGCTAGCTCTAACTTTA+TGG | + | chr6_4:5373700-5373719 | Msa0973050:CDS | 40.0% |
| AGGAAACATAGACTATCACC+AGG | + | chr6_4:5373736-5373755 | Msa0973050:CDS | 40.0% | |
| !!! | ACCTAGCAAAGTTGCTTTTC+TGG | + | chr6_4:5373807-5373826 | Msa0973050:CDS | 40.0% |
| ACCAGAAAAGCAACTTTGCT+AGG | - | chr6_4:5373811-5373830 | None:intergenic | 40.0% | |
| ATCATGTTCTTTCCATTGGC+AGG | + | chr6_4:5374194-5374213 | Msa0973050:intron | 40.0% | |
| AGGTCATCACTTAAGAGGAT+TGG | + | chr6_4:5374228-5374247 | Msa0973050:CDS | 40.0% | |
| TTGCATTTGAGCTGTGTTGT+CGG | + | chr6_4:5374259-5374278 | Msa0973050:CDS | 40.0% | |
| ! | CACCAGTTATAAGCCTTGTA+CGG | + | chr6_4:5374375-5374394 | Msa0973050:three_prime_UTR | 40.0% |
| TACCGTACAAGGCTTATAAC+TGG | - | chr6_4:5374380-5374399 | None:intergenic | 40.0% | |
| CAGGATGTGGTGAAGAGAAA+GGG | - | chr6_4:5369499-5369518 | None:intergenic | 45.0% | |
| CGTAAATCAACGTTCAACCG+TGG | + | chr6_4:5369553-5369572 | Msa0973050:CDS | 45.0% | |
| !! | GAGATAACGGAGTTATCGAG+AGG | - | chr6_4:5369616-5369635 | None:intergenic | 45.0% |
| GGAAGGACACTTCTGATAGA+AGG | + | chr6_4:5370325-5370344 | Msa0973050:intron | 45.0% | |
| TGTGTCAGTAGTGTTGTGTC+CGG | + | chr6_4:5370438-5370457 | Msa0973050:intron | 45.0% | |
| !! | AGTTTTGTAGTGGAGTGTGG+AGG | + | chr6_4:5370867-5370886 | Msa0973050:intron | 45.0% |
| CCACCTGAACTACACCAATT+TGG | - | chr6_4:5370926-5370945 | None:intergenic | 45.0% | |
| CCAAATTGGTGTAGTTCAGG+TGG | + | chr6_4:5370923-5370942 | Msa0973050:intron | 45.0% | |
| GTTGGTTATCGGTGCACAAA+TGG | + | chr6_4:5371186-5371205 | Msa0973050:intron | 45.0% | |
| TGTGGGATGGAAAGAGATAG+AGG | + | chr6_4:5371400-5371419 | Msa0973050:intron | 45.0% | |
| GTGGGATGGAAAGAGATAGA+GGG | + | chr6_4:5371401-5371420 | Msa0973050:intron | 45.0% | |
| TGGGATGGAAAGAGATAGAG+GGG | + | chr6_4:5371402-5371421 | Msa0973050:intron | 45.0% | |
| GAGGTCAATCAACCTGTTGA+CGG | + | chr6_4:5371482-5371501 | Msa0973050:intron | 45.0% | |
| AATACAGGATGTCCTTGACG+AGG | + | chr6_4:5371825-5371844 | Msa0973050:CDS | 45.0% | |
| CATTTCCAGATTCCTCGTCA+AGG | - | chr6_4:5371840-5371859 | None:intergenic | 45.0% | |
| GAAATGTCACATGCGGATCA+AGG | + | chr6_4:5371854-5371873 | Msa0973050:CDS | 45.0% | |
| AATGTCACATGCGGATCAAG+GGG | + | chr6_4:5371856-5371875 | Msa0973050:CDS | 45.0% | |
| ! | AACACCTTTGGAGAGTTTGG+AGG | + | chr6_4:5371889-5371908 | Msa0973050:CDS | 45.0% |
| TTCACCTCCAAACTCTCCAA+AGG | - | chr6_4:5371896-5371915 | None:intergenic | 45.0% | |
| TTTGGAGAGTTTGGAGGTGA+AGG | + | chr6_4:5371895-5371914 | Msa0973050:CDS | 45.0% | |
| TTGGAGAGTTTGGAGGTGAA+GGG | + | chr6_4:5371896-5371915 | Msa0973050:CDS | 45.0% | |
| ATGTATTTCAGAGCCTGAGG+CGG | - | chr6_4:5372028-5372047 | None:intergenic | 45.0% | |
| ! | ATTCAATCAAGGCACCTCCT+TGG | - | chr6_4:5372185-5372204 | None:intergenic | 45.0% |
| TATCGGGTGAATTGCTCCTA+TGG | + | chr6_4:5372217-5372236 | Msa0973050:intron | 45.0% | |
| TCTTCCACTGCCATCTGTTA+TGG | + | chr6_4:5372446-5372465 | Msa0973050:intron | 45.0% | |
| TCATCCATAACAGATGGCAG+TGG | - | chr6_4:5372453-5372472 | None:intergenic | 45.0% | |
| !! | TGGTTTGGGTTGAAGGAGTT+AGG | + | chr6_4:5372485-5372504 | Msa0973050:intron | 45.0% |
| !! | TTTGGGTTGAAGGAGTTAGG+TGG | + | chr6_4:5372488-5372507 | Msa0973050:intron | 45.0% |
| CAACTACCCTAAGCGTGTTT+AGG | - | chr6_4:5372940-5372959 | None:intergenic | 45.0% | |
| TTAGGGTAGTTGTGCATGTG+TGG | + | chr6_4:5372948-5372967 | Msa0973050:intron | 45.0% | |
| GGGAATTCGGAACAATTTGC+TGG | + | chr6_4:5373230-5373249 | Msa0973050:intron | 45.0% | |
| TCGCTCTTTCGATCCTGATA+TGG | + | chr6_4:5373260-5373279 | Msa0973050:intron | 45.0% | |
| ! | TCGTGAGGCATTACCATATC+AGG | - | chr6_4:5373276-5373295 | None:intergenic | 45.0% |
| AACAGAAGTCATGACTCGTG+AGG | - | chr6_4:5373291-5373310 | None:intergenic | 45.0% | |
| GTTGCAGCACTATGACTTAG+TGG | + | chr6_4:5373346-5373365 | Msa0973050:intron | 45.0% | |
| !! | GGGGTGTTGAAGAGAAAAAG+AGG | - | chr6_4:5374328-5374347 | None:intergenic | 45.0% |
| AGGGGGAAAAATGGGGATTT+GGG | - | chr6_4:5374348-5374367 | None:intergenic | 45.0% | |
| AAGGGGGAAAAATGGGGATT+TGG | - | chr6_4:5374349-5374368 | None:intergenic | 45.0% | |
| TGATGCTGCCATGGAAGAAG+AGG | - | chr6_4:5369356-5369375 | None:intergenic | 50.0% | |
| GTGATGCGTGAGAGGATGAA+GGG | - | chr6_4:5369394-5369413 | None:intergenic | 50.0% | |
| !! | AGATGGGTGAGATGGGTTGT+TGG | - | chr6_4:5369416-5369435 | None:intergenic | 50.0% |
| TGGTGAAGAGAAAGGGTCGA+CGG | - | chr6_4:5369492-5369511 | None:intergenic | 50.0% | |
| GCAGGATGTGGTGAAGAGAA+AGG | - | chr6_4:5369500-5369519 | None:intergenic | 50.0% | |
| AGAGTTCGAACATTGGGCAG+AGG | + | chr6_4:5370808-5370827 | Msa0973050:intron | 50.0% | |
| AGTGGAGTGTGGAGGATACT+TGG | + | chr6_4:5370875-5370894 | Msa0973050:intron | 50.0% | |
| ! | TTTTCCTACCAGTCCCCACT+GGG | - | chr6_4:5371234-5371253 | None:intergenic | 50.0% |
| ! | ATTTTCCTACCAGTCCCCAC+TGG | - | chr6_4:5371235-5371254 | None:intergenic | 50.0% |
| ! | AGTGGGGACTGGTAGGAAAA+TGG | + | chr6_4:5371234-5371253 | Msa0973050:intron | 50.0% |
| ! | GTGGGGACTGGTAGGAAAAT+GGG | + | chr6_4:5371235-5371254 | Msa0973050:intron | 50.0% |
| CTGAAATTGGAGAGGGATGC+AGG | + | chr6_4:5371356-5371375 | Msa0973050:intron | 50.0% | |
| CAATAGTGCGGCAATGGTGT+GGG | + | chr6_4:5371383-5371402 | Msa0973050:intron | 50.0% | |
| ! | CTACGGTGACGAAAGTGCAA+CGG | + | chr6_4:5371439-5371458 | Msa0973050:intron | 50.0% |
| ! | AAAGTGCAACGGTGCTGGAA+TGG | + | chr6_4:5371450-5371469 | Msa0973050:intron | 50.0% |
| TGTCACCAAATGCATGCGCT+TGG | + | chr6_4:5371571-5371590 | Msa0973050:intron | 50.0% | |
| TGACACCAAGCGCATGCATT+TGG | - | chr6_4:5371579-5371598 | None:intergenic | 50.0% | |
| GATGTCCTTGACGAGGAATC+TGG | + | chr6_4:5371832-5371851 | Msa0973050:CDS | 50.0% | |
| !! | GGCGGATTGTGAAACACCTT+TGG | + | chr6_4:5371877-5371896 | Msa0973050:CDS | 50.0% |
| AAGGGTGGTGAAGAGGAACA+TGG | + | chr6_4:5371914-5371933 | Msa0973050:CDS | 50.0% | |
| AGGGTGGTGAAGAGGAACAT+GGG | + | chr6_4:5371915-5371934 | Msa0973050:CDS | 50.0% | |
| GGAACATGGGGAAACTGAGA+AGG | + | chr6_4:5371928-5371947 | Msa0973050:CDS | 50.0% | |
| ! | TAAGACGCCATAAAGCGCCA+TGG | + | chr6_4:5372379-5372398 | Msa0973050:intron | 50.0% |
| GCCTACCATCCTTCACAAGT+AGG | + | chr6_4:5372403-5372422 | Msa0973050:intron | 50.0% | |
| GCCTACTTGTGAAGGATGGT+AGG | - | chr6_4:5372407-5372426 | None:intergenic | 50.0% | |
| TGTGGCCTACTTGTGAAGGA+TGG | - | chr6_4:5372411-5372430 | None:intergenic | 50.0% | |
| !! | ACTACGCTGGTTTGGGTTGA+AGG | + | chr6_4:5372478-5372497 | Msa0973050:intron | 50.0% |
| ! | CACTGCGAAGAGCATAGAGA+TGG | - | chr6_4:5372654-5372673 | None:intergenic | 50.0% |
| ! | GCCCCTCCTTAGGCTTTTAT+AGG | - | chr6_4:5372980-5372999 | None:intergenic | 50.0% |
| TCCTCCACTTCCTCTGATGA+CGG | - | chr6_4:5373632-5373651 | None:intergenic | 50.0% | |
| ! | TAGAGCTAGCTTCCTCGACA+AGG | - | chr6_4:5373694-5373713 | None:intergenic | 50.0% |
| GACTATCACCAGGACGATGA+TGG | + | chr6_4:5373746-5373765 | Msa0973050:CDS | 50.0% | |
| ACTCATCACCATCATCGTCC+TGG | - | chr6_4:5373757-5373776 | None:intergenic | 50.0% | |
| TGCTAGGTAATCGCGAGAAG+TGG | - | chr6_4:5373795-5373814 | None:intergenic | 50.0% | |
| GGGGGAAAAATGGGGATTTG+GGG | - | chr6_4:5374347-5374366 | None:intergenic | 50.0% | |
| GGTGATGCGTGAGAGGATGA+AGG | - | chr6_4:5369395-5369414 | None:intergenic | 55.0% | |
| !! | GGTTGTTGGTGATGCGTGAG+AGG | - | chr6_4:5369402-5369421 | None:intergenic | 55.0% |
| GGTGGAGAGATGGGTGAGAT+GGG | - | chr6_4:5369423-5369442 | None:intergenic | 55.0% | |
| TGGTGGAGAGATGGGTGAGA+TGG | - | chr6_4:5369424-5369443 | None:intergenic | 55.0% | |
| !! | GGAGAGGATGGTGGAGAGAT+GGG | - | chr6_4:5369432-5369451 | None:intergenic | 55.0% |
| AGAAGAGAGAGGGGAGAGGA+TGG | - | chr6_4:5369444-5369463 | None:intergenic | 55.0% | |
| AGGAAGAAGAGAGAGGGGAG+AGG | - | chr6_4:5369448-5369467 | None:intergenic | 55.0% | |
| AAAGGGTCGACGGTGACGAT+GGG | - | chr6_4:5369482-5369501 | None:intergenic | 55.0% | |
| ACATCCTGCCACCACGTTGA+CGG | + | chr6_4:5369511-5369530 | Msa0973050:CDS | 55.0% | |
| TTTCCTACCAGTCCCCACTG+GGG | - | chr6_4:5371233-5371252 | None:intergenic | 55.0% | |
| ! | GATGCAGGAGCGCAATAGTG+CGG | + | chr6_4:5371371-5371390 | Msa0973050:intron | 55.0% |
| GCAATAGTGCGGCAATGGTG+TGG | + | chr6_4:5371382-5371401 | Msa0973050:intron | 55.0% | |
| CGTTGCACTTTCGTCACCGT+AGG | - | chr6_4:5371441-5371460 | None:intergenic | 55.0% | |
| ! | TGACGAAAGTGCAACGGTGC+TGG | + | chr6_4:5371445-5371464 | Msa0973050:intron | 55.0% |
| ACTGGTGCACTACCGTCAAC+AGG | - | chr6_4:5371497-5371516 | None:intergenic | 55.0% | |
| GAGAGTTTGGAGGTGAAGGG+TGG | + | chr6_4:5371899-5371918 | Msa0973050:CDS | 55.0% | |
| GGGTGGTGAAGAGGAACATG+GGG | + | chr6_4:5371916-5371935 | Msa0973050:CDS | 55.0% | |
| ! | CTTTGGAGATTTGCCGCCTC+AGG | + | chr6_4:5372012-5372031 | Msa0973050:CDS | 55.0% |
| GTAGGCACCATGGCGCTTTA+TGG | - | chr6_4:5372389-5372408 | None:intergenic | 55.0% | |
| GTGAAGGATGGTAGGCACCA+TGG | - | chr6_4:5372399-5372418 | None:intergenic | 55.0% | |
| TCGCTGTGGCCTACTTGTGA+AGG | - | chr6_4:5372415-5372434 | None:intergenic | 55.0% | |
| GGCTCAGACACGCACAAACA+CGG | - | chr6_4:5372871-5372890 | None:intergenic | 55.0% | |
| !! | AAAGCCTAAGGAGGGGCGTT+TGG | + | chr6_4:5372983-5373002 | Msa0973050:intron | 55.0% |
| GGAGTTGAATGCCCAGAAGC+AGG | + | chr6_4:5373182-5373201 | Msa0973050:intron | 55.0% | |
| AATGTCTCGGCCGTCATCAG+AGG | + | chr6_4:5373619-5373638 | Msa0973050:CDS | 55.0% | |
| !! | GGGAGAGGATGGTGGAGAGA+TGG | - | chr6_4:5369433-5369452 | None:intergenic | 60.0% |
| AGAGAGAGGGGAGAGGATGG+TGG | - | chr6_4:5369441-5369460 | None:intergenic | 60.0% | |
| GGCGGAGGAAGAAGAGAGAG+GGG | - | chr6_4:5369453-5369472 | None:intergenic | 60.0% | |
| CGGCGGAGGAAGAAGAGAGA+GGG | - | chr6_4:5369454-5369473 | None:intergenic | 60.0% | |
| ACGGCGGAGGAAGAAGAGAG+AGG | - | chr6_4:5369455-5369474 | None:intergenic | 60.0% | |
| GACGGTGACGATGGGGATGA+CGG | - | chr6_4:5369474-5369493 | None:intergenic | 60.0% | |
| AAGGGTCGACGGTGACGATG+GGG | - | chr6_4:5369481-5369500 | None:intergenic | 60.0% | |
| GAAAGGGTCGACGGTGACGA+TGG | - | chr6_4:5369483-5369502 | None:intergenic | 60.0% | |
| GTCAACGTGGTGGCAGGATG+TGG | - | chr6_4:5369512-5369531 | None:intergenic | 60.0% | |
| CAACGTCGTCTCCGTCAACG+TGG | - | chr6_4:5369525-5369544 | None:intergenic | 60.0% | |
| AGGAAGCTAGGCTACCCCAG+TGG | + | chr6_4:5371216-5371235 | Msa0973050:intron | 60.0% | |
| GGAAGCTAGGCTACCCCAGT+GGG | + | chr6_4:5371217-5371236 | Msa0973050:intron | 60.0% | |
| GAAGCTAGGCTACCCCAGTG+GGG | + | chr6_4:5371218-5371237 | Msa0973050:intron | 60.0% | |
| GGACACCCCGAGTGTGATGT+TGG | + | chr6_4:5371281-5371300 | Msa0973050:intron | 60.0% | |
| CTCGGCCAACATCACACTCG+GGG | - | chr6_4:5371289-5371308 | None:intergenic | 60.0% | |
| CCTCGGCCAACATCACACTC+GGG | - | chr6_4:5371290-5371309 | None:intergenic | 60.0% | |
| GCCTCGGCCAACATCACACT+CGG | - | chr6_4:5371291-5371310 | None:intergenic | 60.0% | |
| GTGTGATGTTGGCCGAGGCT+TGG | + | chr6_4:5371292-5371311 | Msa0973050:intron | 60.0% | |
| AGTTCCAACCGGCCAAGCCT+CGG | - | chr6_4:5371307-5371326 | None:intergenic | 60.0% | |
| GGAGCGCAATAGTGCGGCAA+TGG | + | chr6_4:5371377-5371396 | Msa0973050:intron | 60.0% | |
| AGTGCGGCAATGGTGTGGGA+TGG | + | chr6_4:5371387-5371406 | Msa0973050:intron | 60.0% | |
| GCTGGAATGGCACTGTGACG+AGG | + | chr6_4:5371463-5371482 | Msa0973050:intron | 60.0% | |
| GTCACATGCGGATCAAGGGG+CGG | + | chr6_4:5371859-5371878 | Msa0973050:CDS | 60.0% | |
| GGAGGTGAAGGGTGGTGAAG+AGG | + | chr6_4:5371907-5371926 | Msa0973050:CDS | 60.0% | |
| TTGCAGCAGCAGTAGTCGCG+CGG | + | chr6_4:5371985-5372004 | Msa0973050:CDS | 60.0% | |
| AGTAGTCGCGCGGGAGTCTT+TGG | + | chr6_4:5371995-5372014 | Msa0973050:CDS | 60.0% | |
| GCTTCCAAACGCCCCTCCTT+AGG | - | chr6_4:5372990-5373009 | None:intergenic | 60.0% | |
| TCGGCCGTCATCAGAGGAAG+TGG | + | chr6_4:5373625-5373644 | Msa0973050:CDS | 60.0% | |
| GCCGTCATCAGAGGAAGTGG+AGG | + | chr6_4:5373628-5373647 | Msa0973050:CDS | 60.0% | |
| ! | GGTGACGATGGGGATGACGG+CGG | - | chr6_4:5369471-5369490 | None:intergenic | 65.0% |
| GTCTCCGTCAACGTGGTGGC+AGG | - | chr6_4:5369518-5369537 | None:intergenic | 65.0% | |
| CGTCGTCTCCGTCAACGTGG+TGG | - | chr6_4:5369522-5369541 | None:intergenic | 65.0% | |
| TAGGCTACCCCAGTGGGGAC+TGG | + | chr6_4:5371223-5371242 | Msa0973050:intron | 65.0% | |
| ! | CTACCCCAGTGGGGACTGGT+AGG | + | chr6_4:5371227-5371246 | Msa0973050:intron | 65.0% |
| CCCGAGTGTGATGTTGGCCG+AGG | + | chr6_4:5371287-5371306 | Msa0973050:intron | 65.0% | |
| GATGTTGGCCGAGGCTTGGC+CGG | + | chr6_4:5371296-5371315 | Msa0973050:intron | 65.0% | |
| TGCAGCAGCAGTAGTCGCGC+GGG | + | chr6_4:5371986-5372005 | Msa0973050:CDS | 65.0% | |
| ! | GACGATGGGGATGACGGCGG+AGG | - | chr6_4:5369468-5369487 | None:intergenic | 70.0% |
| TTGGCCGAGGCTTGGCCGGT+TGG | + | chr6_4:5371300-5371319 | Msa0973050:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 5369228 | 5374563 | 5369228 | ID=Msa0973050;Name=Msa0973050 |
| chr6_4 | mRNA | 5369228 | 5374563 | 5369228 | ID=Msa0973050-mRNA-1;Parent=Msa0973050;Name=Msa0973050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|0.66|1|1|1|1|4|272|330 |
| chr6_4 | exon | 5369228 | 5369782 | 5369228 | ID=Msa0973050-mRNA-1:exon:2279;Parent=Msa0973050-mRNA-1 |
| chr6_4 | exon | 5371805 | 5372084 | 5371805 | ID=Msa0973050-mRNA-1:exon:2280;Parent=Msa0973050-mRNA-1 |
| chr6_4 | exon | 5373611 | 5373828 | 5373611 | ID=Msa0973050-mRNA-1:exon:2281;Parent=Msa0973050-mRNA-1 |
| chr6_4 | exon | 5374216 | 5374563 | 5374216 | ID=Msa0973050-mRNA-1:exon:2282;Parent=Msa0973050-mRNA-1 |
| chr6_4 | five_prime_UTR | 5369228 | 5369363 | 5369228 | ID=Msa0973050-mRNA-1:five_prime_utr;Parent=Msa0973050-mRNA-1 |
| chr6_4 | CDS | 5369364 | 5369782 | 5369364 | ID=Msa0973050-mRNA-1:cds;Parent=Msa0973050-mRNA-1 |
| chr6_4 | CDS | 5371805 | 5372084 | 5371805 | ID=Msa0973050-mRNA-1:cds;Parent=Msa0973050-mRNA-1 |
| chr6_4 | CDS | 5373611 | 5373828 | 5373611 | ID=Msa0973050-mRNA-1:cds;Parent=Msa0973050-mRNA-1 |
| chr6_4 | CDS | 5374216 | 5374291 | 5374216 | ID=Msa0973050-mRNA-1:cds;Parent=Msa0973050-mRNA-1 |
| chr6_4 | three_prime_UTR | 5374292 | 5374563 | 5374292 | ID=Msa0973050-mRNA-1:three_prime_utr;Parent=Msa0973050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
