AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0827340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827340 MtrunA17_Chr1g0201561 97.714 175 3 1 1 174 1 175 3.62e-122 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827340 AT1G34000.1 65.909 176 54 5 1 174 1 172 4.95e-55 172

Find 42 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCCTTCTCTCGAATTT+TGG 0.108201 5_3:-68496711 Msa0827340:CDS
GAATTGTGCATCATGGAAAT+TGG 0.209181 5_3:+68496515 None:intergenic
CAGAAGCCAAGTTCTGTTAT+TGG 0.242057 5_3:-68498379 Msa0827340:CDS
TCCATTGCTAATCTCATTCT+TGG 0.259463 5_3:+68498234 None:intergenic
GTGTATTTATCTTTGTTCTT+TGG 0.267188 5_3:+68498671 None:intergenic
AGCTTTATGCTGTTACTATA+AGG 0.314703 5_3:-68498516 Msa0827340:CDS
TTCTTCAGATGGGCAATGTT+TGG 0.321634 5_3:-68496792 Msa0827340:intron
AAAGGTTGAGGAAGATTAGA+AGG 0.364940 5_3:+68498439 None:intergenic
GGCTTCTGTGGTTGTGGAGG+AGG 0.386924 5_3:+68498394 None:intergenic
GAGGAAGATGAATGAGTTGT+TGG 0.427102 5_3:+68498583 None:intergenic
AATTGTGCATCATGGAAATT+GGG 0.429200 5_3:+68496516 None:intergenic
GTCTGAGCCCGTTGCAAACT+CGG 0.430085 5_3:+68496749 None:intergenic
GGTGAAGGTTTCAAAGGTTG+AGG 0.438534 5_3:+68498427 None:intergenic
TCATCTCCAATAACAGAACT+TGG 0.445908 5_3:+68498373 None:intergenic
AGGAAGATGAATGAGTTGTT+GGG 0.449866 5_3:+68498584 None:intergenic
GAACTTGGCTTCTGTGGTTG+TGG 0.451217 5_3:+68498388 None:intergenic
TTGCTAACCGAGTTTGCAAC+GGG 0.454057 5_3:-68496756 Msa0827340:CDS
GGAGGCTGAGAAGGAGGTGA+AGG 0.470690 5_3:+68498412 None:intergenic
ATAAGGAATGTTCAGAATGA+TGG 0.482112 5_3:-68498499 Msa0827340:CDS
AGATGAAGTTGAACATGAAG+AGG 0.502915 5_3:+68498564 None:intergenic
CTTGAACAAGCTGCAGATCA+AGG 0.507475 5_3:-68498277 Msa0827340:CDS
CTTGGCTTCTGTGGTTGTGG+AGG 0.510538 5_3:+68498391 None:intergenic
TATAGTAACAGCATAAAGCT+TGG 0.513051 5_3:+68498519 None:intergenic
TTAGAAGGTTCTTTCACAGA+AGG 0.521152 5_3:+68498454 None:intergenic
AAAGCAAGAATTGTGCATCA+TGG 0.527473 5_3:+68496508 None:intergenic
ATAACAGAACTTGGCTTCTG+TGG 0.527549 5_3:+68498382 None:intergenic
TGTGGAGGAGGCTGAGAAGG+AGG 0.535122 5_3:+68498406 None:intergenic
TCTTTCACAGAAGGAGCCGC+TGG 0.536412 5_3:+68498463 None:intergenic
GTGTTATCAAAATCAGAGGA+TGG 0.539556 5_3:+68498723 None:intergenic
GGTTGTGGAGGAGGCTGAGA+AGG 0.543573 5_3:+68498403 None:intergenic
GTTGCTAACCGAGTTTGCAA+CGG 0.550254 5_3:-68496757 Msa0827340:CDS
AGAGGATGGGTGTGTGGACA+AGG 0.551464 5_3:+68498737 None:intergenic
CTATCCCAAAATTCGAGAGA+AGG 0.568832 5_3:+68496706 None:intergenic
GAAGGAGGTGAAGGTTTCAA+AGG 0.586451 5_3:+68498421 None:intergenic
GCCAAGAATGAGATTAGCAA+TGG 0.587710 5_3:-68498235 Msa0827340:CDS
TGCATCATGGAAATTGGGAA+AGG 0.591648 5_3:+68496521 None:intergenic
TGTTATCAAAATCAGAGGAT+GGG 0.600673 5_3:+68498724 None:intergenic
AGAATGAGATTAGCAATGGA+AGG 0.602777 5_3:-68498231 Msa0827340:intron
CATAGTGTTATCAAAATCAG+AGG 0.614036 5_3:+68498719 None:intergenic
AAAATCAGAGGATGGGTGTG+TGG 0.614445 5_3:+68498731 None:intergenic
GGAGCCGCTGGTCTTCTGAG+AGG 0.691891 5_3:+68498475 None:intergenic
TGGTCCTCTCAGAAGACCAG+CGG 0.739227 5_3:-68498479 Msa0827340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATTAATATTTAAGAA+AGG + chr5_3:68497085-68497104 None:intergenic 10.0%
!!! TTTATTTTATCATTTGTTAT+AGG - chr5_3:68497305-68497324 Msa0827340:intron 10.0%
!!! AATTACAAATTATTTTCATT+TGG - chr5_3:68497867-68497886 Msa0827340:intron 10.0%
!!! ATTACAAATTATTTTCATTT+GGG - chr5_3:68497868-68497887 Msa0827340:intron 10.0%
!!! TTTAAAATGTAAAATCATTA+CGG + chr5_3:68498406-68498425 None:intergenic 10.0%
!! TTCAAATTAATATTTAAGAA+AGG + chr5_3:68497085-68497104 None:intergenic 10.0%
!!! TTTATTTTATCATTTGTTAT+AGG - chr5_3:68497305-68497324 Msa0827340:intron 10.0%
!!! AATTACAAATTATTTTCATT+TGG - chr5_3:68497867-68497886 Msa0827340:intron 10.0%
!!! ATTACAAATTATTTTCATTT+GGG - chr5_3:68497868-68497887 Msa0827340:intron 10.0%
!!! TTTAAAATGTAAAATCATTA+CGG + chr5_3:68498406-68498425 None:intergenic 10.0%
!!! AATTCTTTCTATTTTTGATT+TGG - chr5_3:68497041-68497060 Msa0827340:intron 15.0%
!!! ATTCTTTCTATTTTTGATTT+GGG - chr5_3:68497042-68497061 Msa0827340:intron 15.0%
!! AGAATTAAAGCAATAAATTT+GGG + chr5_3:68497530-68497549 None:intergenic 15.0%
!! AAGAATTAAAGCAATAAATT+TGG + chr5_3:68497531-68497550 None:intergenic 15.0%
!!! TTAGATATGATAAGTTTTTT+TGG - chr5_3:68498748-68498767 Msa0827340:five_prime_UTR 15.0%
!!! AATTCTTTCTATTTTTGATT+TGG - chr5_3:68497041-68497060 Msa0827340:intron 15.0%
!!! ATTCTTTCTATTTTTGATTT+GGG - chr5_3:68497042-68497061 Msa0827340:intron 15.0%
!! AGAATTAAAGCAATAAATTT+GGG + chr5_3:68497530-68497549 None:intergenic 15.0%
!! AAGAATTAAAGCAATAAATT+TGG + chr5_3:68497531-68497550 None:intergenic 15.0%
!!! TACAACTTTTTCTTTTGTTT+TGG + chr5_3:68496543-68496562 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGATTTG+GGG - chr5_3:68497043-68497062 Msa0827340:intron 20.0%
!! TAATGATTAATGATAACCTT+TGG - chr5_3:68497568-68497587 Msa0827340:intron 20.0%
!!! TGTGCTTTTATATATGAATA+TGG - chr5_3:68498348-68498367 Msa0827340:CDS 20.0%
!!! TACAACTTTTTCTTTTGTTT+TGG + chr5_3:68496543-68496562 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGATTTG+GGG - chr5_3:68497043-68497062 Msa0827340:intron 20.0%
!! TAATGATTAATGATAACCTT+TGG - chr5_3:68497568-68497587 Msa0827340:intron 20.0%
!!! TGTGCTTTTATATATGAATA+TGG - chr5_3:68498348-68498367 Msa0827340:CDS 20.0%
! GTGTATTTATCTTTGTTCTT+TGG + chr5_3:68496567-68496586 None:intergenic 25.0%
!!! ATGTTACAGACATGTTTTTT+GGG + chr5_3:68496609-68496628 None:intergenic 25.0%
! TGATTGTGTTATCTTTATGT+TGG - chr5_3:68497112-68497131 Msa0827340:intron 25.0%
!!! AAGAACTAGTTAGGTTTTTT+TGG - chr5_3:68497138-68497157 Msa0827340:intron 25.0%
!! TCATGATGTTATTGATTGAA+CGG - chr5_3:68497446-68497465 Msa0827340:intron 25.0%
!! ACGAAACTTTTTGTCATTAA+GGG + chr5_3:68497665-68497684 None:intergenic 25.0%
! TAAAACATTCCAACTAATGT+AGG - chr5_3:68497709-68497728 Msa0827340:intron 25.0%
! AATTCAAATTACAGTGTGTT+GGG + chr5_3:68497844-68497863 None:intergenic 25.0%
! TAATTCAAATTACAGTGTGT+TGG + chr5_3:68497845-68497864 None:intergenic 25.0%
! ATTGATCAGATTTACAATTC+TGG + chr5_3:68498028-68498047 None:intergenic 25.0%
! GTATTATCTCTTGTTCAAAA+TGG - chr5_3:68498115-68498134 Msa0827340:intron 25.0%
!! TAAAAGCACATTAGAAACAA+AGG + chr5_3:68498338-68498357 None:intergenic 25.0%
! GTGTATTTATCTTTGTTCTT+TGG + chr5_3:68496567-68496586 None:intergenic 25.0%
!!! ATGTTACAGACATGTTTTTT+GGG + chr5_3:68496609-68496628 None:intergenic 25.0%
! TGATTGTGTTATCTTTATGT+TGG - chr5_3:68497112-68497131 Msa0827340:intron 25.0%
!!! AAGAACTAGTTAGGTTTTTT+TGG - chr5_3:68497138-68497157 Msa0827340:intron 25.0%
!! TCATGATGTTATTGATTGAA+CGG - chr5_3:68497446-68497465 Msa0827340:intron 25.0%
!! ACGAAACTTTTTGTCATTAA+GGG + chr5_3:68497665-68497684 None:intergenic 25.0%
! TAAAACATTCCAACTAATGT+AGG - chr5_3:68497709-68497728 Msa0827340:intron 25.0%
! AATTCAAATTACAGTGTGTT+GGG + chr5_3:68497844-68497863 None:intergenic 25.0%
! TAATTCAAATTACAGTGTGT+TGG + chr5_3:68497845-68497864 None:intergenic 25.0%
! ATTGATCAGATTTACAATTC+TGG + chr5_3:68498028-68498047 None:intergenic 25.0%
! GTATTATCTCTTGTTCAAAA+TGG - chr5_3:68498115-68498134 Msa0827340:intron 25.0%
!! TAAAAGCACATTAGAAACAA+AGG + chr5_3:68498338-68498357 None:intergenic 25.0%
TGTTATCAAAATCAGAGGAT+GGG + chr5_3:68496514-68496533 None:intergenic 30.0%
CATAGTGTTATCAAAATCAG+AGG + chr5_3:68496519-68496538 None:intergenic 30.0%
!!! TGTTACAGACATGTTTTTTG+GGG + chr5_3:68496608-68496627 None:intergenic 30.0%
!!! GATGTTACAGACATGTTTTT+TGG + chr5_3:68496610-68496629 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG + chr5_3:68496719-68496738 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG - chr5_3:68496719-68496738 Msa0827340:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG - chr5_3:68496736-68496755 Msa0827340:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG + chr5_3:68496985-68497004 None:intergenic 30.0%
AATAAGCTAAAAACAGCTCA+AGG + chr5_3:68497238-68497257 None:intergenic 30.0%
!! AGTTAACTTGTTTGTCCAAT+TGG - chr5_3:68497380-68497399 Msa0827340:intron 30.0%
! CGAAACTTTTTGTCATTAAG+GGG + chr5_3:68497664-68497683 None:intergenic 30.0%
! CACGAAACTTTTTGTCATTA+AGG + chr5_3:68497666-68497685 None:intergenic 30.0%
ATTCAAATTACAGTGTGTTG+GGG + chr5_3:68497843-68497862 None:intergenic 30.0%
TCCAGCAAACAGTAATTAAT+TGG - chr5_3:68497988-68498007 Msa0827340:intron 30.0%
ACCAATTAATTACTGTTTGC+TGG + chr5_3:68497992-68498011 None:intergenic 30.0%
ATCTGATCAATAAGTACATG+CGG - chr5_3:68498037-68498056 Msa0827340:intron 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG - chr5_3:68498432-68498451 Msa0827340:CDS 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG - chr5_3:68498433-68498452 Msa0827340:CDS 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG - chr5_3:68498538-68498557 Msa0827340:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG + chr5_3:68498722-68498741 None:intergenic 30.0%
TGTTATCAAAATCAGAGGAT+GGG + chr5_3:68496514-68496533 None:intergenic 30.0%
CATAGTGTTATCAAAATCAG+AGG + chr5_3:68496519-68496538 None:intergenic 30.0%
!!! TGTTACAGACATGTTTTTTG+GGG + chr5_3:68496608-68496627 None:intergenic 30.0%
!!! GATGTTACAGACATGTTTTT+TGG + chr5_3:68496610-68496629 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG + chr5_3:68496719-68496738 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG - chr5_3:68496719-68496738 Msa0827340:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG - chr5_3:68496736-68496755 Msa0827340:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG + chr5_3:68496985-68497004 None:intergenic 30.0%
AATAAGCTAAAAACAGCTCA+AGG + chr5_3:68497238-68497257 None:intergenic 30.0%
!! AGTTAACTTGTTTGTCCAAT+TGG - chr5_3:68497380-68497399 Msa0827340:intron 30.0%
! CGAAACTTTTTGTCATTAAG+GGG + chr5_3:68497664-68497683 None:intergenic 30.0%
! CACGAAACTTTTTGTCATTA+AGG + chr5_3:68497666-68497685 None:intergenic 30.0%
ATTCAAATTACAGTGTGTTG+GGG + chr5_3:68497843-68497862 None:intergenic 30.0%
TCCAGCAAACAGTAATTAAT+TGG - chr5_3:68497988-68498007 Msa0827340:intron 30.0%
ACCAATTAATTACTGTTTGC+TGG + chr5_3:68497992-68498011 None:intergenic 30.0%
ATCTGATCAATAAGTACATG+CGG - chr5_3:68498037-68498056 Msa0827340:intron 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG - chr5_3:68498432-68498451 Msa0827340:CDS 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG - chr5_3:68498433-68498452 Msa0827340:CDS 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG - chr5_3:68498538-68498557 Msa0827340:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG + chr5_3:68498722-68498741 None:intergenic 30.0%
GTGTTATCAAAATCAGAGGA+TGG + chr5_3:68496515-68496534 None:intergenic 35.0%
!!! TTACAGACATGTTTTTTGGG+GGG + chr5_3:68496606-68496625 None:intergenic 35.0%
!!! GTTACAGACATGTTTTTTGG+GGG + chr5_3:68496607-68496626 None:intergenic 35.0%
!! TTGTTGGGATTTTGATGCAT+GGG + chr5_3:68496639-68496658 None:intergenic 35.0%
AGGAAGATGAATGAGTTGTT+GGG + chr5_3:68496654-68496673 None:intergenic 35.0%
AGATGAAGTTGAACATGAAG+AGG + chr5_3:68496674-68496693 None:intergenic 35.0%
TTAGAAGGTTCTTTCACAGA+AGG + chr5_3:68496784-68496803 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+AGG + chr5_3:68496799-68496818 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG + chr5_3:68496865-68496884 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG - chr5_3:68496906-68496925 Msa0827340:intron 35.0%
ACAAAAAGCTAAGGAATTGC+AGG - chr5_3:68496915-68496934 Msa0827340:intron 35.0%
CTTGGCAATGAATCCAAAAA+AGG + chr5_3:68496986-68497005 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG + chr5_3:68497004-68497023 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG - chr5_3:68497004-68497023 Msa0827340:intron 35.0%
!! GATTTGGGGTTGATATAAGT+TGG - chr5_3:68497057-68497076 Msa0827340:intron 35.0%
! TGTTGGTAGAAGAACTAGTT+AGG - chr5_3:68497129-68497148 Msa0827340:intron 35.0%
TAAAGTTGAACTGTTTCCCT+AGG + chr5_3:68497289-68497308 None:intergenic 35.0%
! TAACTAACTGGTTCTCCAAT+TGG + chr5_3:68497398-68497417 None:intergenic 35.0%
GAGACTCAAAACTAACTAAC+TGG + chr5_3:68497410-68497429 None:intergenic 35.0%
!!! TAGTTAGTTTTGAGTCTCTG+TGG - chr5_3:68497412-68497431 Msa0827340:intron 35.0%
TCCATCACTATCAAAACTAC+AGG + chr5_3:68497594-68497613 None:intergenic 35.0%
!!! TGTAGTTTTGATAGTGATGG+AGG - chr5_3:68497593-68497612 Msa0827340:intron 35.0%
! AACTTTTTGTCATTAAGGGG+AGG + chr5_3:68497661-68497680 None:intergenic 35.0%
CAATCTAGTCCTACATTAGT+TGG + chr5_3:68497721-68497740 None:intergenic 35.0%
AATGTAGGACTAGATTGTGT+TGG - chr5_3:68497724-68497743 Msa0827340:intron 35.0%
! TAGTTCTACGTTGATTAGAG+AGG - chr5_3:68497765-68497784 Msa0827340:intron 35.0%
TCAACAAGATTGCTTCTGTA+TGG + chr5_3:68497895-68497914 None:intergenic 35.0%
TTGAAGGTTTCTACTGTCAT+AGG + chr5_3:68497940-68497959 None:intergenic 35.0%
TATGACAGTAGAAACCTTCA+AGG - chr5_3:68497939-68497958 Msa0827340:intron 35.0%
! CTTAAATTAGTCTGCCTTGA+AGG + chr5_3:68497956-68497975 None:intergenic 35.0%
AAATGGATACTAGAGTAACG+TGG - chr5_3:68498132-68498151 Msa0827340:intron 35.0%
!!! TCAAGTGATGTGGGATTTTT+TGG + chr5_3:68498179-68498198 None:intergenic 35.0%
! TTTGGTAAAAGGTGCATTGA+GGG + chr5_3:68498248-68498267 None:intergenic 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG - chr5_3:68498456-68498475 Msa0827340:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG - chr5_3:68498524-68498543 Msa0827340:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG - chr5_3:68498525-68498544 Msa0827340:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG + chr5_3:68498723-68498742 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG + chr5_3:68498730-68498749 None:intergenic 35.0%
GTGTTATCAAAATCAGAGGA+TGG + chr5_3:68496515-68496534 None:intergenic 35.0%
!!! TTACAGACATGTTTTTTGGG+GGG + chr5_3:68496606-68496625 None:intergenic 35.0%
!!! GTTACAGACATGTTTTTTGG+GGG + chr5_3:68496607-68496626 None:intergenic 35.0%
!! TTGTTGGGATTTTGATGCAT+GGG + chr5_3:68496639-68496658 None:intergenic 35.0%
AGGAAGATGAATGAGTTGTT+GGG + chr5_3:68496654-68496673 None:intergenic 35.0%
AGATGAAGTTGAACATGAAG+AGG + chr5_3:68496674-68496693 None:intergenic 35.0%
TTAGAAGGTTCTTTCACAGA+AGG + chr5_3:68496784-68496803 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+AGG + chr5_3:68496799-68496818 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG + chr5_3:68496865-68496884 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG - chr5_3:68496906-68496925 Msa0827340:intron 35.0%
ACAAAAAGCTAAGGAATTGC+AGG - chr5_3:68496915-68496934 Msa0827340:intron 35.0%
CTTGGCAATGAATCCAAAAA+AGG + chr5_3:68496986-68497005 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG + chr5_3:68497004-68497023 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG - chr5_3:68497004-68497023 Msa0827340:intron 35.0%
!! GATTTGGGGTTGATATAAGT+TGG - chr5_3:68497057-68497076 Msa0827340:intron 35.0%
! TGTTGGTAGAAGAACTAGTT+AGG - chr5_3:68497129-68497148 Msa0827340:intron 35.0%
TAAAGTTGAACTGTTTCCCT+AGG + chr5_3:68497289-68497308 None:intergenic 35.0%
! TAACTAACTGGTTCTCCAAT+TGG + chr5_3:68497398-68497417 None:intergenic 35.0%
GAGACTCAAAACTAACTAAC+TGG + chr5_3:68497410-68497429 None:intergenic 35.0%
!!! TAGTTAGTTTTGAGTCTCTG+TGG - chr5_3:68497412-68497431 Msa0827340:intron 35.0%
TCCATCACTATCAAAACTAC+AGG + chr5_3:68497594-68497613 None:intergenic 35.0%
!!! TGTAGTTTTGATAGTGATGG+AGG - chr5_3:68497593-68497612 Msa0827340:intron 35.0%
! AACTTTTTGTCATTAAGGGG+AGG + chr5_3:68497661-68497680 None:intergenic 35.0%
CAATCTAGTCCTACATTAGT+TGG + chr5_3:68497721-68497740 None:intergenic 35.0%
AATGTAGGACTAGATTGTGT+TGG - chr5_3:68497724-68497743 Msa0827340:intron 35.0%
! TAGTTCTACGTTGATTAGAG+AGG - chr5_3:68497765-68497784 Msa0827340:intron 35.0%
TCAACAAGATTGCTTCTGTA+TGG + chr5_3:68497895-68497914 None:intergenic 35.0%
TTGAAGGTTTCTACTGTCAT+AGG + chr5_3:68497940-68497959 None:intergenic 35.0%
TATGACAGTAGAAACCTTCA+AGG - chr5_3:68497939-68497958 Msa0827340:intron 35.0%
! CTTAAATTAGTCTGCCTTGA+AGG + chr5_3:68497956-68497975 None:intergenic 35.0%
AAATGGATACTAGAGTAACG+TGG - chr5_3:68498132-68498151 Msa0827340:intron 35.0%
!!! TCAAGTGATGTGGGATTTTT+TGG + chr5_3:68498179-68498198 None:intergenic 35.0%
! TTTGGTAAAAGGTGCATTGA+GGG + chr5_3:68498248-68498267 None:intergenic 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG - chr5_3:68498456-68498475 Msa0827340:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG - chr5_3:68498524-68498543 Msa0827340:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG - chr5_3:68498525-68498544 Msa0827340:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG + chr5_3:68498723-68498742 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG + chr5_3:68498730-68498749 None:intergenic 35.0%
!! GTTGTTGGGATTTTGATGCA+TGG + chr5_3:68496640-68496659 None:intergenic 40.0%
GAGGAAGATGAATGAGTTGT+TGG + chr5_3:68496655-68496674 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG + chr5_3:68496856-68496875 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG - chr5_3:68496856-68496875 Msa0827340:intron 40.0%
GCCAAGAATGAGATTAGCAA+TGG - chr5_3:68497000-68497019 Msa0827340:intron 40.0%
AATCTGTATCAGTTACGCTG+TGG - chr5_3:68497469-68497488 Msa0827340:intron 40.0%
CTATCAAAACTACAGGCCAA+AGG + chr5_3:68497587-68497606 None:intergenic 40.0%
!!! GCCTGTAGTTTTGATAGTGA+TGG - chr5_3:68497590-68497609 Msa0827340:intron 40.0%
TTTGTCATTAAGGGGAGGAA+GGG + chr5_3:68497656-68497675 None:intergenic 40.0%
! TTTTGTCATTAAGGGGAGGA+AGG + chr5_3:68497657-68497676 None:intergenic 40.0%
GGAGAGTTGGAAGTAACAAA+GGG + chr5_3:68497812-68497831 None:intergenic 40.0%
ACTGTCATAGGAAAGCTCTA+AGG + chr5_3:68497928-68497947 None:intergenic 40.0%
GATACTAGAGTAACGTGGAA+TGG - chr5_3:68498137-68498156 Msa0827340:intron 40.0%
!!! TGTGGGATTTTTTGGTGGAT+CGG + chr5_3:68498171-68498190 None:intergenic 40.0%
!!! AGTGATGTGGGATTTTTTGG+TGG + chr5_3:68498176-68498195 None:intergenic 40.0%
! CTTTGGTAAAAGGTGCATTG+AGG + chr5_3:68498249-68498268 None:intergenic 40.0%
! CTCAATGCACCTTTTACCAA+AGG - chr5_3:68498247-68498266 Msa0827340:CDS 40.0%
CGACTTTGTCCTTTGGTAAA+AGG + chr5_3:68498259-68498278 None:intergenic 40.0%
GCTCAAAACCGACATTATCT+CGG - chr5_3:68498295-68498314 Msa0827340:CDS 40.0%
TTCTTCAGATGGGCAATGTT+TGG - chr5_3:68498443-68498462 Msa0827340:CDS 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG - chr5_3:68498455-68498474 Msa0827340:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG + chr5_3:68498532-68498551 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG + chr5_3:68498717-68498736 None:intergenic 40.0%
!! GTTGTTGGGATTTTGATGCA+TGG + chr5_3:68496640-68496659 None:intergenic 40.0%
GAGGAAGATGAATGAGTTGT+TGG + chr5_3:68496655-68496674 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG + chr5_3:68496856-68496875 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG - chr5_3:68496856-68496875 Msa0827340:intron 40.0%
GCCAAGAATGAGATTAGCAA+TGG - chr5_3:68497000-68497019 Msa0827340:intron 40.0%
AATCTGTATCAGTTACGCTG+TGG - chr5_3:68497469-68497488 Msa0827340:intron 40.0%
CTATCAAAACTACAGGCCAA+AGG + chr5_3:68497587-68497606 None:intergenic 40.0%
!!! GCCTGTAGTTTTGATAGTGA+TGG - chr5_3:68497590-68497609 Msa0827340:intron 40.0%
TTTGTCATTAAGGGGAGGAA+GGG + chr5_3:68497656-68497675 None:intergenic 40.0%
! TTTTGTCATTAAGGGGAGGA+AGG + chr5_3:68497657-68497676 None:intergenic 40.0%
GGAGAGTTGGAAGTAACAAA+GGG + chr5_3:68497812-68497831 None:intergenic 40.0%
ACTGTCATAGGAAAGCTCTA+AGG + chr5_3:68497928-68497947 None:intergenic 40.0%
GATACTAGAGTAACGTGGAA+TGG - chr5_3:68498137-68498156 Msa0827340:intron 40.0%
!!! TGTGGGATTTTTTGGTGGAT+CGG + chr5_3:68498171-68498190 None:intergenic 40.0%
!!! AGTGATGTGGGATTTTTTGG+TGG + chr5_3:68498176-68498195 None:intergenic 40.0%
! CTTTGGTAAAAGGTGCATTG+AGG + chr5_3:68498249-68498268 None:intergenic 40.0%
! CTCAATGCACCTTTTACCAA+AGG - chr5_3:68498247-68498266 Msa0827340:CDS 40.0%
CGACTTTGTCCTTTGGTAAA+AGG + chr5_3:68498259-68498278 None:intergenic 40.0%
GCTCAAAACCGACATTATCT+CGG - chr5_3:68498295-68498314 Msa0827340:CDS 40.0%
TTCTTCAGATGGGCAATGTT+TGG - chr5_3:68498443-68498462 Msa0827340:CDS 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG - chr5_3:68498455-68498474 Msa0827340:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG + chr5_3:68498532-68498551 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG + chr5_3:68498717-68498736 None:intergenic 40.0%
AAAATCAGAGGATGGGTGTG+TGG + chr5_3:68496507-68496526 None:intergenic 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG + chr5_3:68496811-68496830 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG + chr5_3:68496817-68496836 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG - chr5_3:68496958-68496977 Msa0827340:intron 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG - chr5_3:68496970-68496989 Msa0827340:intron 45.0%
CCTAGAGGCTAGAAAGCTTA+TGG + chr5_3:68497262-68497281 None:intergenic 45.0%
! CCATAAGCTTTCTAGCCTCT+AGG - chr5_3:68497259-68497278 Msa0827340:intron 45.0%
!! TCTAGCCTCTAGGATAACCT+AGG - chr5_3:68497269-68497288 Msa0827340:intron 45.0%
!! CTAGCCTCTAGGATAACCTA+GGG - chr5_3:68497270-68497289 Msa0827340:intron 45.0%
GTTTCCCTAGGTTATCCTAG+AGG + chr5_3:68497277-68497296 None:intergenic 45.0%
GGAGCTAAATGTCAGAGTAC+TGG - chr5_3:68497786-68497805 Msa0827340:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG + chr5_3:68497813-68497832 None:intergenic 45.0%
CCTCGATTCTCAAGTGATGT+GGG + chr5_3:68498188-68498207 None:intergenic 45.0%
!! CCGCTTTTCCGAGATAATGT+CGG + chr5_3:68498306-68498325 None:intergenic 45.0%
CCGACATTATCTCGGAAAAG+CGG - chr5_3:68498303-68498322 Msa0827340:CDS 45.0%
GTTGCTAACCGAGTTTGCAA+CGG - chr5_3:68498478-68498497 Msa0827340:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG - chr5_3:68498479-68498498 Msa0827340:CDS 45.0%
AAAATCAGAGGATGGGTGTG+TGG + chr5_3:68496507-68496526 None:intergenic 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG + chr5_3:68496811-68496830 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG + chr5_3:68496817-68496836 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG - chr5_3:68496958-68496977 Msa0827340:intron 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG - chr5_3:68496970-68496989 Msa0827340:intron 45.0%
CCTAGAGGCTAGAAAGCTTA+TGG + chr5_3:68497262-68497281 None:intergenic 45.0%
! CCATAAGCTTTCTAGCCTCT+AGG - chr5_3:68497259-68497278 Msa0827340:intron 45.0%
!! TCTAGCCTCTAGGATAACCT+AGG - chr5_3:68497269-68497288 Msa0827340:intron 45.0%
!! CTAGCCTCTAGGATAACCTA+GGG - chr5_3:68497270-68497289 Msa0827340:intron 45.0%
GTTTCCCTAGGTTATCCTAG+AGG + chr5_3:68497277-68497296 None:intergenic 45.0%
GGAGCTAAATGTCAGAGTAC+TGG - chr5_3:68497786-68497805 Msa0827340:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG + chr5_3:68497813-68497832 None:intergenic 45.0%
CCTCGATTCTCAAGTGATGT+GGG + chr5_3:68498188-68498207 None:intergenic 45.0%
!! CCGCTTTTCCGAGATAATGT+CGG + chr5_3:68498306-68498325 None:intergenic 45.0%
CCGACATTATCTCGGAAAAG+CGG - chr5_3:68498303-68498322 Msa0827340:CDS 45.0%
GTTGCTAACCGAGTTTGCAA+CGG - chr5_3:68498478-68498497 Msa0827340:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG - chr5_3:68498479-68498498 Msa0827340:CDS 45.0%
!! GGGGGGATTGATGATGATAC+TGG + chr5_3:68496589-68496608 None:intergenic 50.0%
GAACTTGGCTTCTGTGGTTG+TGG + chr5_3:68496850-68496869 None:intergenic 50.0%
CCCACATCACTTGAGAATCG+AGG - chr5_3:68498185-68498204 Msa0827340:intron 50.0%
GCCTCGATTCTCAAGTGATG+TGG + chr5_3:68498189-68498208 None:intergenic 50.0%
GCACTCACGACTTTGTCCTT+TGG + chr5_3:68498266-68498285 None:intergenic 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG - chr5_3:68498273-68498292 Msa0827340:CDS 50.0%
!! GGGGGGATTGATGATGATAC+TGG + chr5_3:68496589-68496608 None:intergenic 50.0%
GAACTTGGCTTCTGTGGTTG+TGG + chr5_3:68496850-68496869 None:intergenic 50.0%
CCCACATCACTTGAGAATCG+AGG - chr5_3:68498185-68498204 Msa0827340:intron 50.0%
GCCTCGATTCTCAAGTGATG+TGG + chr5_3:68498189-68498208 None:intergenic 50.0%
GCACTCACGACTTTGTCCTT+TGG + chr5_3:68498266-68498285 None:intergenic 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG - chr5_3:68498273-68498292 Msa0827340:CDS 50.0%
AGAGGATGGGTGTGTGGACA+AGG + chr5_3:68496501-68496520 None:intergenic 55.0%
TGGTCCTCTCAGAAGACCAG+CGG - chr5_3:68496756-68496775 Msa0827340:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG + chr5_3:68496775-68496794 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG + chr5_3:68496847-68496866 None:intergenic 55.0%
CAGTGTGTTGGGGAGTCTGA+GGG + chr5_3:68497833-68497852 None:intergenic 55.0%
ACAGTGTGTTGGGGAGTCTG+AGG + chr5_3:68497834-68497853 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG + chr5_3:68498489-68498508 None:intergenic 55.0%
AGAGGATGGGTGTGTGGACA+AGG + chr5_3:68496501-68496520 None:intergenic 55.0%
TGGTCCTCTCAGAAGACCAG+CGG - chr5_3:68496756-68496775 Msa0827340:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG + chr5_3:68496775-68496794 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG + chr5_3:68496847-68496866 None:intergenic 55.0%
CAGTGTGTTGGGGAGTCTGA+GGG + chr5_3:68497833-68497852 None:intergenic 55.0%
ACAGTGTGTTGGGGAGTCTG+AGG + chr5_3:68497834-68497853 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG + chr5_3:68498489-68498508 None:intergenic 55.0%
GGAGGCTGAGAAGGAGGTGA+AGG + chr5_3:68496826-68496845 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG + chr5_3:68496832-68496851 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG + chr5_3:68496835-68496854 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG + chr5_3:68496844-68496863 None:intergenic 60.0%
TGGGGAGTCTGAGGGAGAGT+TGG + chr5_3:68497825-68497844 None:intergenic 60.0%
GGAGGCTGAGAAGGAGGTGA+AGG + chr5_3:68496826-68496845 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG + chr5_3:68496832-68496851 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG + chr5_3:68496835-68496854 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG + chr5_3:68496844-68496863 None:intergenic 60.0%
TGGGGAGTCTGAGGGAGAGT+TGG + chr5_3:68497825-68497844 None:intergenic 60.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG + chr5_3:68496763-68496782 None:intergenic 65.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG + chr5_3:68496763-68496782 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 68496490 68498767 68496490 ID=Msa0827340;Name=Msa0827340
chr5_3 mRNA 68496490 68498767 68496490 ID=Msa0827340-mRNA-1;Parent=Msa0827340;Name=Msa0827340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=126|1|1|1|1|1|2|202|174
chr5_3 exon 68496490 68496806 68496490 ID=Msa0827340-mRNA-1:exon:21517;Parent=Msa0827340-mRNA-1
chr5_3 exon 68498232 68498767 68498232 ID=Msa0827340-mRNA-1:exon:21516;Parent=Msa0827340-mRNA-1
chr5_3 five_prime_UTR 68498642 68498767 68498642 ID=Msa0827340-mRNA-1:five_prime_utr;Parent=Msa0827340-mRNA-1
chr5_3 CDS 68498232 68498641 68498232 ID=Msa0827340-mRNA-1:cds;Parent=Msa0827340-mRNA-1
chr5_3 CDS 68496692 68496806 68496692 ID=Msa0827340-mRNA-1:cds;Parent=Msa0827340-mRNA-1
chr5_3 three_prime_UTR 68496490 68496691 68496490 ID=Msa0827340-mRNA-1:three_prime_utr;Parent=Msa0827340-mRNA-1
Gene Sequence

>Msa0827340

ATGTCTGTAACATCTTCAATCCCATGCATCAAAATCCCAACAACTCATTCATCTTCCTCTTCATGTTCAACTTCATCTTATTCTTTTAGATTCTCTTCTTCCAAGCTTTATGCTGTTACTATAAGGAATGTTCAGAATGATGGTCCTCTCAGAAGACCAGCGGCTCCTTCTGTGAAAGAACCTTCTAATCTTCCTCAACCTTTGAAACCTTCACCTCCTTCTCAGCCTCCTCCACAACCACAGAAGCCAAGTTCTGTTATTGGAGATGATAAAAGCGTTGTTTCATTAGAGTTTCAGAGACAAAAAGCTAAGGAATTGCAGGAATATTTCAAAAAGAAGAAGCTTGAACAAGCTGCAGATCAAGGTCCCTTTTTTGGATTCATTGCCAAGAATGAGATTAGCAATGGAAGATGGGCAATGTTTGGTTTTGCTGTTGGGTTGCTAACCGAGTTTGCAACGGGCTCAGACTTTGTTGATCAAGTGAAGATCCTTCTCTCGAATTTTGGGATAGTAGATTTGGATTGA

Protein sequence

>Msa0827340

MSVTSSIPCIKIPTTHSSSSSCSTSSYSFRFSSSKLYAVTIRNVQNDGPLRRPAAPSVKEPSNLPQPLKPSPPSQPPPQPQKPSSVIGDDKSVVSLEFQRQKAKELQEYFKKKKLEQAADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEFATGSDFVDQVKILLSNFGIVDLD*