AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0903570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903570 MtrunA17_Chr6g0451961 87.258 361 8 2 1 328 1 356 0.0 595
Msa0903570 MtrunA17_Chr1g0207651 32.958 355 170 11 27 327 24 364 8.05e-42 149
Msa0903570 MtrunA17_Chr3g0143831 22.642 318 185 9 31 326 41 319 2.80e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903570 AT5G14970.1 48.396 374 128 11 1 328 1 355 8.60e-96 288
Msa0903570 AT2G14910.1 33.163 392 180 10 1 327 1 375 6.63e-43 152
Msa0903570 AT2G14910.2 30.894 369 173 9 1 304 1 352 1.59e-31 121
Msa0903570 AT1G63610.1 27.308 260 163 7 72 326 88 326 1.24e-13 71.2

Find 107 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCTCCAAACTCTTTAA+AGG 0.208375 6_2:-782243 None:intergenic
GGAAGCTAGCTCTAACTTTA+TGG 0.233045 6_2:+784166 Msa0903570:CDS
GAGAAGGTTGTTTCTGATTT+GGG 0.261359 6_2:+782294 Msa0903570:CDS
TGAGAAGGTTGTTTCTGATT+TGG 0.269725 6_2:+782293 Msa0903570:CDS
TGAAACGCCTTTAAAGAGTT+TGG 0.302289 6_2:+782236 Msa0903570:CDS
AGGAAGAAGAGAGAGGGGAG+AGG 0.316167 6_2:-779811 None:intergenic
ATTGGCAGGTGTATGTTATT+AGG 0.317981 6_2:+784673 Msa0903570:intron
CTTGTTTCTTCTATCATCAC+TGG 0.342003 6_2:+780120 Msa0903570:CDS
GGGAGAGGGTGGTGGAGAGA+TGG 0.342989 6_2:-779796 None:intergenic
TGATTTGGGGTTAGCGAATT+CGG 0.348201 6_2:+782308 Msa0903570:CDS
TACCGTACAAGGCTTATAAC+TGG 0.362093 6_2:-784842 None:intergenic
AGTAATGGCGCAGGAGTCTT+TGG 0.369133 6_2:+782345 Msa0903570:CDS
AGAGAGAGGGGAGAGGGTGG+TGG 0.369712 6_2:-779804 None:intergenic
TTTCATCGTTACTCTGTTGT+TGG 0.378579 6_2:+779689 Msa0903570:five_prime_UTR
GGAGAGGGTGGTGGAGAGAT+GGG 0.382331 6_2:-779795 None:intergenic
GATGTCCTTGACGAGGAATC+TGG 0.386448 6_2:+782182 Msa0903570:CDS
CTTTGGAGATTTGCCGCCTC+AGG 0.387256 6_2:+782362 Msa0903570:CDS
AGAGAAAGGGTCGACGGTGG+GGG 0.387263 6_2:-779843 None:intergenic
ACACCAGTTCAATGTAAAAC+TGG 0.389970 6_2:+784870 Msa0903570:three_prime_UTR
GAGAAAGGGTCGACGGTGGG+GGG 0.394343 6_2:-779842 None:intergenic
GGTGGAGAGATGGGTGAGAT+GGG 0.394624 6_2:-779786 None:intergenic
AGAAAGGGTCGACGGTGGGG+GGG 0.400000 6_2:-779841 None:intergenic
GGAAGAAGAGAGAGGGGAGA+GGG 0.409734 6_2:-779810 None:intergenic
TTATTAGGTCATCACTTAAG+AGG 0.413839 6_2:+784688 Msa0903570:CDS
GTGTTCCTCTTCTTCTTCCA+TGG 0.415672 6_2:+779711 Msa0903570:exon
ATCGTTGTTGTGTTATAAAG+AGG 0.415993 6_2:-779667 None:intergenic
CACTGTGAAGCCACGGTTGA+AGG 0.422214 6_2:-779923 None:intergenic
ACGGCGGAGGAAGAAGAGAG+AGG 0.422744 6_2:-779818 None:intergenic
AGATGGGTGAGATGGGTTGT+TGG 0.427729 6_2:-779779 None:intergenic
CAAACTATTTCTACTATGCT+TGG 0.427819 6_2:+780033 Msa0903570:CDS
AGAAGAGAGAGGGGAGAGGG+TGG 0.429852 6_2:-779807 None:intergenic
AACTCATCACCATCATCGTC+CGG 0.439465 6_2:-784221 None:intergenic
GAAATATCACATGCGGATCA+AGG 0.445138 6_2:+782204 Msa0903570:CDS
TGGTGGAGAGATGGGTGAGA+TGG 0.453731 6_2:-779787 None:intergenic
AAGAGAAAGGGTCGACGGTG+GGG 0.464517 6_2:-779844 None:intergenic
GTCTCCGTCAACGTGGTGGC+AGG 0.465322 6_2:-779875 None:intergenic
ACATCCTGCCACCACGTTGA+CGG 0.472105 6_2:+779871 Msa0903570:CDS
AGAAACACCTTTAGAGATAA+CGG 0.473945 6_2:-779986 None:intergenic
CTTATAACTGGTGTTATACA+AGG 0.475909 6_2:-784830 None:intergenic
TTGCATTTGAGCTGTGTTGT+CGG 0.482310 6_2:+784724 Msa0903570:CDS
CGGCGGAGGAAGAAGAGAGA+GGG 0.496174 6_2:-779817 None:intergenic
AGGTCATCACTTAAGAGGAT+TGG 0.496502 6_2:+784693 Msa0903570:CDS
TTTAAAGAGTTTGGAGGTGA+AGG 0.499329 6_2:+782245 Msa0903570:CDS
TCGGCCGTCATCAGAGGAAG+TGG 0.517662 6_2:+784091 Msa0903570:CDS
GAAGAGAAAGGGTCGACGGT+GGG 0.519887 6_2:-779845 None:intergenic
GATAACTCCGTTATCTCTAA+AGG 0.520590 6_2:+779979 Msa0903570:CDS
TTGAGATTCAACCTCTTCAT+CGG 0.522451 6_2:+780094 Msa0903570:CDS
CGCTATGGAATGCAGAGTAC+AGG 0.526987 6_2:+782160 Msa0903570:CDS
CAATGTAAAACTGGAAGTGT+GGG 0.530848 6_2:+784879 Msa0903570:three_prime_UTR
GGTGATGCGTGAGAGGATGA+AGG 0.535643 6_2:-779758 None:intergenic
ATGTGACATGCTTTAATGCT+TGG 0.535662 6_2:-784963 None:intergenic
ATAAGCTAAGGTAAAGGCTA+AGG 0.540160 6_2:+779636 Msa0903570:five_prime_UTR
GAGAAGAAGTTCTAAAAGCA+AGG 0.541887 6_2:-784919 None:intergenic
AAATATCACATGCGGATCAA+GGG 0.543711 6_2:+782205 Msa0903570:CDS
GAAACTTACAGCAGCAGTAA+TGG 0.544279 6_2:+782330 Msa0903570:CDS
GCAGGATGTAGTGAAGAGAA+AGG 0.545166 6_2:-779857 None:intergenic
GACTATCACCCGGACGATGA+TGG 0.547884 6_2:+784212 Msa0903570:CDS
GGTTGTTGGTGATGCGTGAG+AGG 0.550045 6_2:-779765 None:intergenic
TCAATGTAAAACTGGAAGTG+TGG 0.551448 6_2:+784878 Msa0903570:three_prime_UTR
AGAAGGTTGTTTCTGATTTG+GGG 0.556586 6_2:+782295 Msa0903570:CDS
AACGCCTTTAAAGAGTTTGG+AGG 0.557457 6_2:+782239 Msa0903570:CDS
TTGTTTCTTCTATCATCACT+GGG 0.557906 6_2:+780121 Msa0903570:CDS
TTTATAGAGAATAATAATGG+TGG 0.558374 6_2:+784750 Msa0903570:exon
TCCTCCACTTCCTCTGATGA+CGG 0.560560 6_2:-784095 None:intergenic
ACCAGAAAAGCAACTTTGCT+AGG 0.561251 6_2:-784274 None:intergenic
AAGAGTTTGGAGGTGAAGGG+TGG 0.561930 6_2:+782249 Msa0903570:CDS
GAAACAAGTAACCGATGAAG+AGG 0.564989 6_2:-780105 None:intergenic
TGCTGCCATGGAAGAAGAAG+AGG 0.566564 6_2:-779716 None:intergenic
TTAAAGAGTTTGGAGGTGAA+GGG 0.573325 6_2:+782246 Msa0903570:CDS
GTAACATCAAAATGATCAGA+AGG 0.580361 6_2:-780063 None:intergenic
GGCGGAGGAAGAAGAGAGAG+GGG 0.581662 6_2:-779816 None:intergenic
AAGGGTGGTGAAGAAGAACA+TGG 0.582706 6_2:+782264 Msa0903570:CDS
TACAGCAGCAGTAATGGCGC+AGG 0.586366 6_2:+782336 Msa0903570:CDS
GATAGGTGACTGAAATGTCT+CGG 0.586884 6_2:+784072 Msa0903570:intron
TGAAATTGTTGATGCTGCCA+TGG 0.587458 6_2:-779728 None:intergenic
ACTCATCACCATCATCGTCC+GGG 0.590352 6_2:-784220 None:intergenic
AGGGTGGTGAAGAAGAACAT+GGG 0.599277 6_2:+782265 Msa0903570:CDS
CAGGATGTAGTGAAGAGAAA+GGG 0.604444 6_2:-779856 None:intergenic
GTCTGAGTTGACAAACATGA+AGG 0.606464 6_2:+782410 Msa0903570:CDS
CACCAGTTATAAGCCTTGTA+CGG 0.606516 6_2:+784840 Msa0903570:three_prime_UTR
TGCTAGGTAATCGCGAGAAG+TGG 0.609297 6_2:-784258 None:intergenic
AATGTCTCGGCCGTCATCAG+AGG 0.610274 6_2:+784085 Msa0903570:CDS
TAGATATCACTGTGAAGCCA+CGG 0.611648 6_2:-779930 None:intergenic
GTGATGCGTGAGAGGATGAA+GGG 0.624710 6_2:-779757 None:intergenic
TGAAGAGAAAGGGTCGACGG+TGG 0.624741 6_2:-779846 None:intergenic
TAGAGCTAGCTTCCTCGACA+AGG 0.624862 6_2:-784157 None:intergenic
AATATCACATGCGGATCAAG+GGG 0.625812 6_2:+782206 Msa0903570:CDS
GAGATAACGGAGTTATCGAG+AGG 0.629687 6_2:-779973 None:intergenic
TATAACTGGTGTTATACAAG+GGG 0.631180 6_2:-784828 None:intergenic
TTATAACTGGTGTTATACAA+GGG 0.632664 6_2:-784829 None:intergenic
TTTGAGAAGATTCCTTGTCG+AGG 0.634298 6_2:+784145 Msa0903570:CDS
CGTAAATCAACCTTCAACCG+TGG 0.638048 6_2:+779913 Msa0903570:CDS
TTTATGGAACAATCAGTCGA+AGG 0.638089 6_2:+784182 Msa0903570:CDS
TATTTCCAGATTCCTCGTCA+AGG 0.638754 6_2:-782187 None:intergenic
ATCACATGCGGATCAAGGGG+CGG 0.640143 6_2:+782209 Msa0903570:CDS
AGAACATGGGGAAACTGAGA+AGG 0.640390 6_2:+782278 Msa0903570:CDS
GGGTGGTGAAGAAGAACATG+GGG 0.643013 6_2:+782266 Msa0903570:CDS
TAGTGAAGAGAAAGGGTCGA+CGG 0.646305 6_2:-779849 None:intergenic
GCCGTCATCAGAGGAAGTGG+AGG 0.649197 6_2:+784094 Msa0903570:CDS
TGAATGTATTTCAGAGCCTG+AGG 0.668987 6_2:-782378 None:intergenic
GAATCTGGAAATATCACATG+CGG 0.673688 6_2:+782197 Msa0903570:CDS
ATGTATTTCAGAGCCTGAGG+CGG 0.676018 6_2:-782375 None:intergenic
TGAGTTGACAAACATGAAGG+AGG 0.679770 6_2:+782413 Msa0903570:CDS
CAACGTCGTCTCCGTCAACG+TGG 0.687491 6_2:-779882 None:intergenic
CGTCGTCTCCGTCAACGTGG+TGG 0.693744 6_2:-779879 None:intergenic
AGGAAACATAGACTATCACC+CGG 0.704393 6_2:+784202 Msa0903570:CDS
AGTACAGGATGTCCTTGACG+AGG 0.724418 6_2:+782175 Msa0903570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTATAGATAATTG+AGG - chr6_2:780162-780181 None:intergenic 10.0%
!!! TCATTTTGTTAAATTATTAT+CGG + chr6_2:780565-780584 Msa0903570:intron 10.0%
!!! TCATTTTGTCAAATTATTAT+CGG + chr6_2:780356-780375 Msa0903570:intron 15.0%
!!! GTTGACAATATAAATTATTT+TGG - chr6_2:781019-781038 None:intergenic 15.0%
!! TTATGAATTTAGCATTATAT+TGG + chr6_2:781099-781118 Msa0903570:intron 15.0%
!!! GAAATTGATAAATTTTGAAT+TGG + chr6_2:782113-782132 Msa0903570:intron 15.0%
!! ATAAACTTAAAATTCAATCA+AGG - chr6_2:782546-782565 None:intergenic 15.0%
!!! TGAATTTTAAGTTTATGTAT+CGG + chr6_2:782550-782569 Msa0903570:intron 15.0%
!! TCACAAATTTACAAAATAAA+CGG - chr6_2:783107-783126 None:intergenic 15.0%
!!! TTAGAATTTTGTTAATTTCA+AGG + chr6_2:784547-784566 Msa0903570:intron 15.0%
!!! ACTTTTATAGAGAATAATAA+TGG + chr6_2:784747-784766 Msa0903570:exon 15.0%
!! AAATTCATATATACAACTGT+CGG - chr6_2:779566-779585 None:intergenic 20.0%
!! AAATTATAGATAATTGAGGT+AGG - chr6_2:780158-780177 None:intergenic 20.0%
!! TATTTGATAAATCTCAAAGT+TGG + chr6_2:781610-781629 Msa0903570:intron 20.0%
!!! GAATGAATTTTACAAAATCA+GGG + chr6_2:781672-781691 Msa0903570:intron 20.0%
!!! AATGAATTTTACAAAATCAG+GGG + chr6_2:781673-781692 Msa0903570:intron 20.0%
!! GTGACAACTTAATATAAATA+GGG - chr6_2:781906-781925 None:intergenic 20.0%
!!! TGCAATTTTTTATTATTCCA+AGG + chr6_2:782515-782534 Msa0903570:intron 20.0%
!!! AATTTTTTATTATTCCAAGG+AGG + chr6_2:782518-782537 Msa0903570:intron 20.0%
!!! GAATTTTAAGTTTATGTATC+GGG + chr6_2:782551-782570 Msa0903570:intron 20.0%
!!! AATAATAACCTTCAAGTTAT+CGG - chr6_2:782923-782942 None:intergenic 20.0%
!! GTTATTATTGTGAGAAAAAA+AGG + chr6_2:782934-782953 Msa0903570:intron 20.0%
!!! GAATAATTTGTTTGAAAGAA+TGG - chr6_2:783042-783061 None:intergenic 20.0%
!!! TTATTCTTTGTTGTTTGTAT+TGG + chr6_2:783056-783075 Msa0903570:intron 20.0%
!! ACATGATTAAACACAATAAA+CGG - chr6_2:784646-784665 None:intergenic 20.0%
!! TTTATAGAGAATAATAATGG+TGG + chr6_2:784750-784769 Msa0903570:exon 20.0%
! AATTCATATATACAACTGTC+GGG - chr6_2:779565-779584 None:intergenic 25.0%
!!! GCTTATGTTTTTGTTTTGTT+GGG - chr6_2:779622-779641 None:intergenic 25.0%
!!! AGCTTATGTTTTTGTTTTGT+TGG - chr6_2:779623-779642 None:intergenic 25.0%
! CAAAACAAAAACATAAGCTA+AGG + chr6_2:779624-779643 Msa0903570:five_prime_UTR 25.0%
! AAAAACATAAGCTAAGGTAA+AGG + chr6_2:779630-779649 Msa0903570:five_prime_UTR 25.0%
!! TTGTTAAAGTATTATCAGTG+TGG + chr6_2:780771-780790 Msa0903570:intron 25.0%
! AATTTGAGAGTGACAATAAT+TGG + chr6_2:780943-780962 Msa0903570:intron 25.0%
! ATACTTGAAAAGATTACGTT+TGG + chr6_2:781362-781381 Msa0903570:intron 25.0%
! AATTTAGCACTCAAAACATT+AGG + chr6_2:781425-781444 Msa0903570:intron 25.0%
! ATTTAGCACTCAAAACATTA+GGG + chr6_2:781426-781445 Msa0903570:intron 25.0%
! AAGATATTATCGCCAAATTA+AGG + chr6_2:781486-781505 Msa0903570:intron 25.0%
!! CAAAATATGAAGTTGGTTAT+CGG + chr6_2:781525-781544 Msa0903570:intron 25.0%
! TTTGTAAAATTCATTCCAAC+CGG - chr6_2:781668-781687 None:intergenic 25.0%
!! GGAATGAATTTTACAAAATC+AGG + chr6_2:781671-781690 Msa0903570:intron 25.0%
! CAACTTAATATAAATAGGGA+CGG - chr6_2:781902-781921 None:intergenic 25.0%
! GGTGACAACTTAATATAAAT+AGG - chr6_2:781907-781926 None:intergenic 25.0%
!!! GCAATATTTTGAAGTTTTAG+AGG + chr6_2:782008-782027 Msa0903570:intron 25.0%
!!! AGTTTTAGAGGATTAATGTA+AGG + chr6_2:782020-782039 Msa0903570:intron 25.0%
!!! GTTTTAGAGGATTAATGTAA+GGG + chr6_2:782021-782040 Msa0903570:intron 25.0%
!!! GCTCTATTTTTGTTACTAAT+TGG + chr6_2:782052-782071 Msa0903570:intron 25.0%
!!! TTTTGTTACTAATTGGTTTC+TGG + chr6_2:782059-782078 Msa0903570:intron 25.0%
! ATAAAAAGTTTCACAACCAT+AGG - chr6_2:782586-782605 None:intergenic 25.0%
!! ATGGTTGTGAAACTTTTTAT+CGG + chr6_2:782586-782605 Msa0903570:intron 25.0%
! TAAACTCAAATTACTATCAG+TGG - chr6_2:782619-782638 None:intergenic 25.0%
!! TGACTTTTTACTTTATGACA+TGG - chr6_2:782698-782717 None:intergenic 25.0%
! ATTGACATATAACTAGTAAG+AGG - chr6_2:783226-783245 None:intergenic 25.0%
! ATTCATAGAATGGTGAAAAT+AGG - chr6_2:783538-783557 None:intergenic 25.0%
! TTACTCATAGACTGTTTAAA+AGG + chr6_2:783579-783598 Msa0903570:intron 25.0%
!!! GACAATGTTTATTTTCTTTC+AGG + chr6_2:783629-783648 Msa0903570:intron 25.0%
! TTGTACTAAAAAACGTATAG+TGG - chr6_2:783862-783881 None:intergenic 25.0%
! ACTATCTTCAAATTCTACTA+TGG - chr6_2:783918-783937 None:intergenic 25.0%
!!! TAGCTTATTTCTATTTGCAA+AGG + chr6_2:784007-784026 Msa0903570:intron 25.0%
!!! TCAAAATGTTTTGAACAAGT+TGG - chr6_2:784130-784149 None:intergenic 25.0%
! AAAAGCAAAATCTGTTGTAA+GGG - chr6_2:784321-784340 None:intergenic 25.0%
! AAAAAGCAAAATCTGTTGTA+AGG - chr6_2:784322-784341 None:intergenic 25.0%
! TGATCCATGAAATTGAAAAA+TGG + chr6_2:784442-784461 Msa0903570:intron 25.0%
!!! TAGACCATTTTTCAATTTCA+TGG - chr6_2:784449-784468 None:intergenic 25.0%
! AAATTGAAAAATGGTCTAAC+CGG + chr6_2:784451-784470 Msa0903570:intron 25.0%
! ATTTAGTCTCTATATCATTC+CGG - chr6_2:784473-784492 None:intergenic 25.0%
! AATTTGGTCCATGAAATTAT+AGG - chr6_2:784587-784606 None:intergenic 25.0%
! TTTAATCATGTTCTTTCCAT+TGG + chr6_2:784655-784674 Msa0903570:intron 25.0%
! AAAAAGAGGAAGAATATACA+AGG - chr6_2:784779-784798 None:intergenic 25.0%
!!! TTATAACTGGTGTTATACAA+GGG - chr6_2:784832-784851 None:intergenic 25.0%
!!! CATGTCACATTTTAAGAATA+TGG + chr6_2:784976-784995 Msa0903570:three_prime_UTR 25.0%
ATCGTTGTTGTGTTATAAAG+AGG - chr6_2:779670-779689 None:intergenic 30.0%
! AGAAACACCTTTAGAGATAA+CGG - chr6_2:779989-780008 None:intergenic 30.0%
!! CAAACTATTTCTACTATGCT+TGG + chr6_2:780033-780052 Msa0903570:CDS 30.0%
GTAACATCAAAATGATCAGA+AGG - chr6_2:780066-780085 None:intergenic 30.0%
! TTGTTTCTTCTATCATCACT+GGG + chr6_2:780121-780140 Msa0903570:CDS 30.0%
TTAGAATTTAGTGTCAGTGT+TGG - chr6_2:780318-780337 None:intergenic 30.0%
CTATCAATTATGTGTGTGTT+TGG + chr6_2:780438-780457 Msa0903570:intron 30.0%
GGATTGTGTAAAATTGAGTA+TGG + chr6_2:780851-780870 Msa0903570:intron 30.0%
TTATATTGGTGTGATTCAAG+TGG + chr6_2:781113-781132 Msa0903570:intron 30.0%
!! GGATGTTTTTAATTGTGCTT+TGG + chr6_2:781180-781199 Msa0903570:intron 30.0%
!!! TGTAGTGATTAGTTTTGTAG+TGG + chr6_2:781208-781227 Msa0903570:intron 30.0%
!!! TGTTGTTTTTAATTGTGCTC+TGG + chr6_2:781339-781358 Msa0903570:intron 30.0%
AGGTATCCAAAATATGAAGT+TGG + chr6_2:781518-781537 Msa0903570:intron 30.0%
! CGATAACCAACTTCATATTT+TGG - chr6_2:781527-781546 None:intergenic 30.0%
CAGCGTAGTCAATATATTAT+CGG - chr6_2:782818-782837 None:intergenic 30.0%
TTGTAAATTTGTGAAAAGCG+AGG + chr6_2:783113-783132 Msa0903570:intron 30.0%
ATAATATCCTAAACACGCTT+AGG + chr6_2:783264-783283 Msa0903570:intron 30.0%
TAATATCCTAAACACGCTTA+GGG + chr6_2:783265-783284 Msa0903570:intron 30.0%
! TAAACATGTGCACAAGTTTT+TGG + chr6_2:783369-783388 Msa0903570:intron 30.0%
! CTTTTGATGCATTCATAGAA+TGG - chr6_2:783548-783567 None:intergenic 30.0%
! AACCAAGTATTGTCAAATAG+CGG + chr6_2:783789-783808 Msa0903570:intron 30.0%
TTCAACTTTGTTAATCACAC+TGG + chr6_2:784042-784061 Msa0903570:intron 30.0%
GATATAGAGACTAAATGAAC+CGG + chr6_2:784477-784496 Msa0903570:intron 30.0%
! TCTGAAATTGAAAATTCGCA+AGG - chr6_2:784520-784539 None:intergenic 30.0%
ACATGCTATAAAAAAGAGCT+CGG - chr6_2:784619-784638 None:intergenic 30.0%
TTATTAGGTCATCACTTAAG+AGG + chr6_2:784688-784707 Msa0903570:CDS 30.0%
TTATACAAGGGGAAAAAATG+GGG - chr6_2:784820-784839 None:intergenic 30.0%
GTTATACAAGGGGAAAAAAT+GGG - chr6_2:784821-784840 None:intergenic 30.0%
TGTTATACAAGGGGAAAAAA+TGG - chr6_2:784822-784841 None:intergenic 30.0%
!! TATAACTGGTGTTATACAAG+GGG - chr6_2:784831-784850 None:intergenic 30.0%
!! CTTATAACTGGTGTTATACA+AGG - chr6_2:784833-784852 None:intergenic 30.0%
!! GTCACATTTTAAGAATATGG+TGG + chr6_2:784979-784998 Msa0903570:three_prime_UTR 30.0%
ATAAGCTAAGGTAAAGGCTA+AGG + chr6_2:779636-779655 Msa0903570:five_prime_UTR 35.0%
TTTCATCGTTACTCTGTTGT+TGG + chr6_2:779689-779708 Msa0903570:five_prime_UTR 35.0%
GATAACTCCGTTATCTCTAA+AGG + chr6_2:779979-779998 Msa0903570:CDS 35.0%
TTGAGATTCAACCTCTTCAT+CGG + chr6_2:780094-780113 Msa0903570:CDS 35.0%
! CTTGTTTCTTCTATCATCAC+TGG + chr6_2:780120-780139 Msa0903570:CDS 35.0%
TCAGAACAATCATGTGTGTT+TGG + chr6_2:780222-780241 Msa0903570:intron 35.0%
TTAGTGTCAATGTTGAACAC+CGG - chr6_2:780527-780546 None:intergenic 35.0%
AATTGACAGTAATGTGCTGA+CGG - chr6_2:780636-780655 None:intergenic 35.0%
CTGTCAATTATGTGTGTGTT+TGG + chr6_2:780647-780666 Msa0903570:intron 35.0%
!! TTTGGTTCTTAAGTACCGAA+AGG + chr6_2:780665-780684 Msa0903570:intron 35.0%
!! TTCTATCAGAAGTGTCCTTT+CGG - chr6_2:780683-780702 None:intergenic 35.0%
TTAGAGATTCGTAGATTGAG+TGG + chr6_2:780826-780845 Msa0903570:intron 35.0%
GAGTGACAATAATTGGATGA+TGG + chr6_2:780950-780969 Msa0903570:intron 35.0%
TACTTAGCCAACAAAACTTC+AGG + chr6_2:780974-780993 Msa0903570:intron 35.0%
! TTTTGGTCAACACATCACTA+CGG - chr6_2:781002-781021 None:intergenic 35.0%
GTTCGAACTCTAATCACATA+GGG - chr6_2:781150-781169 None:intergenic 35.0%
TGTTCGAACTCTAATCACAT+AGG - chr6_2:781151-781170 None:intergenic 35.0%
TGTGATTAGAGTTCGAACAT+TGG + chr6_2:781152-781171 Msa0903570:intron 35.0%
GTGATTAGAGTTCGAACATT+GGG + chr6_2:781153-781172 Msa0903570:intron 35.0%
!!! ATTAGTTTTGTAGTGGAGTG+TGG + chr6_2:781215-781234 Msa0903570:intron 35.0%
AGAACCAAATTGTGTAGTTC+AGG + chr6_2:781270-781289 Msa0903570:intron 35.0%
AACTAGAGTCGTATGTGATT+AGG + chr6_2:781297-781316 Msa0903570:intron 35.0%
! TTACGTTTGGCATTTGAGTT+TGG + chr6_2:781375-781394 Msa0903570:intron 35.0%
!! CCTTAAAGAGCACCTTAATT+TGG - chr6_2:781501-781520 None:intergenic 35.0%
! CCAAATTAAGGTGCTCTTTA+AGG + chr6_2:781498-781517 Msa0903570:intron 35.0%
AATGGTTGATTAAGGAAGCT+AGG + chr6_2:781554-781573 Msa0903570:intron 35.0%
!! AGTAAGTTCTGAAATTGGAG+AGG + chr6_2:781697-781716 Msa0903570:intron 35.0%
!! GTAAGTTCTGAAATTGGAGA+GGG + chr6_2:781698-781717 Msa0903570:intron 35.0%
!! TTTGCGCTTTTGAAAGATTG+AGG + chr6_2:781972-781991 Msa0903570:intron 35.0%
TTAGAGGATTAATGTAAGGG+TGG + chr6_2:782024-782043 Msa0903570:intron 35.0%
!!! GTTTCTGGTTTTTTGTGCAA+AGG + chr6_2:782074-782093 Msa0903570:intron 35.0%
! TTGTGCAAAGGTGATGTTTT+TGG + chr6_2:782086-782105 Msa0903570:intron 35.0%
! TGTGCAAAGGTGATGTTTTT+GGG + chr6_2:782087-782106 Msa0903570:intron 35.0%
GAATCTGGAAATATCACATG+CGG + chr6_2:782197-782216 Msa0903570:CDS 35.0%
AAATATCACATGCGGATCAA+GGG + chr6_2:782205-782224 Msa0903570:CDS 35.0%
! TGAAACGCCTTTAAAGAGTT+TGG + chr6_2:782236-782255 Msa0903570:CDS 35.0%
TTCACCTCCAAACTCTTTAA+AGG - chr6_2:782246-782265 None:intergenic 35.0%
TTTAAAGAGTTTGGAGGTGA+AGG + chr6_2:782245-782264 Msa0903570:CDS 35.0%
TTAAAGAGTTTGGAGGTGAA+GGG + chr6_2:782246-782265 Msa0903570:CDS 35.0%
!! TGAGAAGGTTGTTTCTGATT+TGG + chr6_2:782293-782312 Msa0903570:CDS 35.0%
!! GAGAAGGTTGTTTCTGATTT+GGG + chr6_2:782294-782313 Msa0903570:CDS 35.0%
!! AGAAGGTTGTTTCTGATTTG+GGG + chr6_2:782295-782314 Msa0903570:CDS 35.0%
CTACAGAACTATGTTTCGAT+CGG + chr6_2:782649-782668 Msa0903570:intron 35.0%
AGAATTATTGACAATCGCTG+TGG - chr6_2:782775-782794 None:intergenic 35.0%
ATATTATCGGCCATAACAGA+TGG - chr6_2:782805-782824 None:intergenic 35.0%
! CGATAATATATTGACTACGC+TGG + chr6_2:782816-782835 Msa0903570:intron 35.0%
! ATATATTGACTACGCTGGTT+TGG + chr6_2:782821-782840 Msa0903570:intron 35.0%
!! TATATTGACTACGCTGGTTT+GGG + chr6_2:782822-782841 Msa0903570:intron 35.0%
ATGAACAACCGATAACTTGA+AGG + chr6_2:782912-782931 Msa0903570:intron 35.0%
AGTACACCTATAAAAGCCTA+AGG + chr6_2:783305-783324 Msa0903570:intron 35.0%
GCTTATGACAACAAGCTATA+TGG - chr6_2:783461-783480 None:intergenic 35.0%
! TTTCGTCTCATTCTCTTTTC+CGG + chr6_2:783501-783520 Msa0903570:intron 35.0%
AAAATAGGATCAATTCTGGC+CGG - chr6_2:783523-783542 None:intergenic 35.0%
GGTGAAAATAGGATCAATTC+TGG - chr6_2:783527-783546 None:intergenic 35.0%
! AACAGAAGTTGTGATTTGTG+AGG - chr6_2:783759-783778 None:intergenic 35.0%
! AATCAAGTTGCAATTGAGAG+TGG + chr6_2:783972-783991 Msa0903570:intron 35.0%
TTTATGGAACAATCAGTCGA+AGG + chr6_2:784182-784201 Msa0903570:CDS 35.0%
!! GTCTCTGAAATTGTAAGAGT+CGG + chr6_2:784393-784412 Msa0903570:intron 35.0%
TTGCGATGCCTATAATTTCA+TGG + chr6_2:784576-784595 Msa0903570:intron 35.0%
TAATAACATACACCTGCCAA+TGG - chr6_2:784674-784693 None:intergenic 35.0%
ATTGGCAGGTGTATGTTATT+AGG + chr6_2:784673-784692 Msa0903570:intron 35.0%
!!! TGGTGTTTTTTTACCGTACA+AGG - chr6_2:784856-784875 None:intergenic 35.0%
ACACCAGTTCAATGTAAAAC+TGG + chr6_2:784870-784889 Msa0903570:three_prime_UTR 35.0%
! CTTCCAGTTTTACATTGAAC+TGG - chr6_2:784876-784895 None:intergenic 35.0%
TCAATGTAAAACTGGAAGTG+TGG + chr6_2:784878-784897 Msa0903570:three_prime_UTR 35.0%
! CAATGTAAAACTGGAAGTGT+GGG + chr6_2:784879-784898 Msa0903570:three_prime_UTR 35.0%
!! GAGAAGAAGTTCTAAAAGCA+AGG - chr6_2:784922-784941 None:intergenic 35.0%
ATGTGACATGCTTTAATGCT+TGG - chr6_2:784966-784985 None:intergenic 35.0%
TGAAATTGTTGATGCTGCCA+TGG - chr6_2:779731-779750 None:intergenic 40.0%
CAGGATGTAGTGAAGAGAAA+GGG - chr6_2:779859-779878 None:intergenic 40.0%
TAGATATCACTGTGAAGCCA+CGG - chr6_2:779933-779952 None:intergenic 40.0%
GAAACAAGTAACCGATGAAG+AGG - chr6_2:780108-780127 None:intergenic 40.0%
CACATTTCTATCAGAAGGGT+CGG - chr6_2:780287-780306 None:intergenic 40.0%
CGGACACATTTCTATCAGAA+GGG - chr6_2:780291-780310 None:intergenic 40.0%
CCTTCTGATAGAAATGTGTC+CGG + chr6_2:780289-780308 Msa0903570:intron 40.0%
GAAAGGACACTTCTGATAGA+AGG + chr6_2:780682-780701 Msa0903570:intron 40.0%
CGAATCTCTAACACAAACAC+CGG - chr6_2:780817-780836 None:intergenic 40.0%
AGATTCGTAGATTGAGTGGA+TGG + chr6_2:780830-780849 Msa0903570:intron 40.0%
!! TACGGTACCTGAAGTTTTGT+TGG - chr6_2:780984-781003 None:intergenic 40.0%
ACCAAATTGTGTAGTTCAGG+TGG + chr6_2:781273-781292 Msa0903570:intron 40.0%
ACCACCTGAACTACACAATT+TGG - chr6_2:781277-781296 None:intergenic 40.0%
TAGAGTCGTATGTGATTAGG+AGG + chr6_2:781300-781319 Msa0903570:intron 40.0%
TGATTAGGAGGTCGAACATT+TGG + chr6_2:781312-781331 Msa0903570:intron 40.0%
GGTGCACAAATGGTTGATTA+AGG + chr6_2:781546-781565 Msa0903570:intron 40.0%
!! GGGGAAGTAAGTTCTGAAAT+TGG + chr6_2:781692-781711 Msa0903570:intron 40.0%
!!! TGCACCAGTACAGCATTTTT+TGG + chr6_2:781857-781876 Msa0903570:intron 40.0%
!!! ACCAGTACAGCATTTTTTGG+TGG + chr6_2:781860-781879 Msa0903570:intron 40.0%
ACCACCAAAAAATGCTGTAC+TGG - chr6_2:781864-781883 None:intergenic 40.0%
!!! TGGTTGTTGCTGTTTTCGTT+AGG + chr6_2:782133-782152 Msa0903570:intron 40.0%
! TTTTCGTTAGGTACACGCTA+TGG + chr6_2:782145-782164 Msa0903570:intron 40.0%
TATTTCCAGATTCCTCGTCA+AGG - chr6_2:782190-782209 None:intergenic 40.0%
GAAATATCACATGCGGATCA+AGG + chr6_2:782204-782223 Msa0903570:CDS 40.0%
AATATCACATGCGGATCAAG+GGG + chr6_2:782206-782225 Msa0903570:CDS 40.0%
! AACGCCTTTAAAGAGTTTGG+AGG + chr6_2:782239-782258 Msa0903570:CDS 40.0%
! TGATTTGGGGTTAGCGAATT+CGG + chr6_2:782308-782327 Msa0903570:CDS 40.0%
GAAACTTACAGCAGCAGTAA+TGG + chr6_2:782330-782349 Msa0903570:CDS 40.0%
TGAATGTATTTCAGAGCCTG+AGG - chr6_2:782381-782400 None:intergenic 40.0%
! GTCTGAGTTGACAAACATGA+AGG + chr6_2:782410-782429 Msa0903570:CDS 40.0%
! TGAGTTGACAAACATGAAGG+AGG + chr6_2:782413-782432 Msa0903570:CDS 40.0%
! AGTTCGCGTTTTTGTTGCTA+TGG + chr6_2:782462-782481 Msa0903570:intron 40.0%
CGCTTTATGGCGTCTTAAAA+CGG - chr6_2:782722-782741 None:intergenic 40.0%
TTGAAGGAGTTAGGTGGAAA+AGG + chr6_2:782845-782864 Msa0903570:intron 40.0%
AGCATAGAGATGGAAAGAGA+TGG - chr6_2:782979-782998 None:intergenic 40.0%
ACACCTATAAAAGCCTAAGG+AGG + chr6_2:783308-783327 Msa0903570:intron 40.0%
CACCTATAAAAGCCTAAGGA+GGG + chr6_2:783309-783328 Msa0903570:intron 40.0%
ACCTATAAAAGCCTAAGGAG+GGG + chr6_2:783310-783329 Msa0903570:intron 40.0%
TTGCATCATTTCCTGCTTCT+GGG - chr6_2:783664-783683 None:intergenic 40.0%
ATTGCATCATTTCCTGCTTC+TGG - chr6_2:783665-783684 None:intergenic 40.0%
ATGCAATTAGAACACGACAG+AGG + chr6_2:783678-783697 Msa0903570:intron 40.0%
TAGAACACGACAGAGGAATT+CGG + chr6_2:783685-783704 Msa0903570:intron 40.0%
AGGAATTCGGAACAATTTGC+TGG + chr6_2:783698-783717 Msa0903570:intron 40.0%
! TTGTGAGGCATTACCATATC+AGG - chr6_2:783744-783763 None:intergenic 40.0%
!!! GTGCTATTTTTCTCGATACG+CGG + chr6_2:783936-783955 Msa0903570:intron 40.0%
ATCACACTGGATGTCTTGAT+AGG + chr6_2:784055-784074 Msa0903570:intron 40.0%
GATAGGTGACTGAAATGTCT+CGG + chr6_2:784072-784091 Msa0903570:intron 40.0%
TTTGAGAAGATTCCTTGTCG+AGG + chr6_2:784145-784164 Msa0903570:CDS 40.0%
!! GGAAGCTAGCTCTAACTTTA+TGG + chr6_2:784166-784185 Msa0903570:CDS 40.0%
AGGAAACATAGACTATCACC+CGG + chr6_2:784202-784221 Msa0903570:CDS 40.0%
!!! ACCTAGCAAAGTTGCTTTTC+TGG + chr6_2:784273-784292 Msa0903570:CDS 40.0%
ACCAGAAAAGCAACTTTGCT+AGG - chr6_2:784277-784296 None:intergenic 40.0%
AGCTCGGTAAATCGTCAATT+TGG - chr6_2:784603-784622 None:intergenic 40.0%
ATCATGTTCTTTCCATTGGC+AGG + chr6_2:784659-784678 Msa0903570:intron 40.0%
AGGTCATCACTTAAGAGGAT+TGG + chr6_2:784693-784712 Msa0903570:CDS 40.0%
TTGCATTTGAGCTGTGTTGT+CGG + chr6_2:784724-784743 Msa0903570:CDS 40.0%
AGGGGAAAAAATGGGGATTT+GGG - chr6_2:784813-784832 None:intergenic 40.0%
AAGGGGAAAAAATGGGGATT+TGG - chr6_2:784814-784833 None:intergenic 40.0%
! CACCAGTTATAAGCCTTGTA+CGG + chr6_2:784840-784859 Msa0903570:three_prime_UTR 40.0%
TACCGTACAAGGCTTATAAC+TGG - chr6_2:784845-784864 None:intergenic 40.0%
GTGTTCCTCTTCTTCTTCCA+TGG + chr6_2:779711-779730 Msa0903570:exon 45.0%
TAGTGAAGAGAAAGGGTCGA+CGG - chr6_2:779852-779871 None:intergenic 45.0%
GCAGGATGTAGTGAAGAGAA+AGG - chr6_2:779860-779879 None:intergenic 45.0%
CGTAAATCAACCTTCAACCG+TGG + chr6_2:779913-779932 Msa0903570:CDS 45.0%
!! GAGATAACGGAGTTATCGAG+AGG - chr6_2:779976-779995 None:intergenic 45.0%
CCGGACACATTTCTATCAGA+AGG - chr6_2:780292-780311 None:intergenic 45.0%
! TTAGTGTCAGTGTTGGACAC+CGG - chr6_2:780311-780330 None:intergenic 45.0%
CGTGTTAGTAGTGTTGTGTC+CGG + chr6_2:780795-780814 Msa0903570:intron 45.0%
!! AGTTTTGTAGTGGAGTGTGG+AGG + chr6_2:781218-781237 Msa0903570:intron 45.0%
GTTGGTTATCGGTGCACAAA+TGG + chr6_2:781536-781555 Msa0903570:intron 45.0%
TGTGGGATGGAAAGAGATAG+AGG + chr6_2:781749-781768 Msa0903570:intron 45.0%
GTGGGATGGAAAGAGATAGA+GGG + chr6_2:781750-781769 Msa0903570:intron 45.0%
TGGGATGGAAAGAGATAGAG+GGG + chr6_2:781751-781770 Msa0903570:intron 45.0%
GGGTTGTGCAAAACATCCTA+CGG + chr6_2:781771-781790 Msa0903570:intron 45.0%
! ATAGTGCAACAGTGCTGGAA+TGG + chr6_2:781799-781818 Msa0903570:intron 45.0%
GAGGTCAATCAACCTGTTGA+CGG + chr6_2:781831-781850 Msa0903570:intron 45.0%
AAGGGTGGTGAAGAAGAACA+TGG + chr6_2:782264-782283 Msa0903570:CDS 45.0%
AGGGTGGTGAAGAAGAACAT+GGG + chr6_2:782265-782284 Msa0903570:CDS 45.0%
AGAACATGGGGAAACTGAGA+AGG + chr6_2:782278-782297 Msa0903570:CDS 45.0%
ATGTATTTCAGAGCCTGAGG+CGG - chr6_2:782378-782397 None:intergenic 45.0%
! ATTCAATCAAGGCACCTCCT+TGG - chr6_2:782535-782554 None:intergenic 45.0%
TATCGGGTGAATTGCTCCTA+TGG + chr6_2:782567-782586 Msa0903570:intron 45.0%
!! TCGATCGGTGTTTTCGATTG+TGG + chr6_2:782664-782683 Msa0903570:intron 45.0%
TCTTCCACTGCCATCTGTTA+TGG + chr6_2:782792-782811 Msa0903570:intron 45.0%
!! TGGTTTGGGTTGAAGGAGTT+AGG + chr6_2:782836-782855 Msa0903570:intron 45.0%
!! TTTGGGTTGAAGGAGTTAGG+TGG + chr6_2:782839-782858 Msa0903570:intron 45.0%
CAACTACCCTAAGCGTGTTT+AGG - chr6_2:783274-783293 None:intergenic 45.0%
TTAGGGTAGTTGTGCATGTG+TGG + chr6_2:783282-783301 Msa0903570:intron 45.0%
TCGCTCTTTCGATCCTGATA+TGG + chr6_2:783728-783747 Msa0903570:intron 45.0%
CGCCGCTATTTGACAATACT+TGG - chr6_2:783794-783813 None:intergenic 45.0%
AACTCATCACCATCATCGTC+CGG - chr6_2:784224-784243 None:intergenic 45.0%
!! GGGGTGTTGAAGAGAAAAAG+AGG - chr6_2:784793-784812 None:intergenic 45.0%
GGGGAAAAAATGGGGATTTG+GGG - chr6_2:784812-784831 None:intergenic 45.0%
TGCTGCCATGGAAGAAGAAG+AGG - chr6_2:779719-779738 None:intergenic 50.0%
GTGATGCGTGAGAGGATGAA+GGG - chr6_2:779760-779779 None:intergenic 50.0%
!! AGATGGGTGAGATGGGTTGT+TGG - chr6_2:779782-779801 None:intergenic 50.0%
CGGACACACTTCGATCAGAA+GGG - chr6_2:780507-780526 None:intergenic 50.0%
CCTTCTGATCGAAGTGTGTC+CGG + chr6_2:780505-780524 Msa0903570:intron 50.0%
AGAGTTCGAACATTGGGCAG+AGG + chr6_2:781159-781178 Msa0903570:intron 50.0%
AGTGGAGTGTGGAGGATACT+TGG + chr6_2:781226-781245 Msa0903570:intron 50.0%
! TTTTCCTACCAGTCCCCACT+GGG - chr6_2:781584-781603 None:intergenic 50.0%
! ATTTTCCTACCAGTCCCCAC+TGG - chr6_2:781585-781604 None:intergenic 50.0%
! AGTGGGGACTGGTAGGAAAA+TGG + chr6_2:781584-781603 Msa0903570:intron 50.0%
! GTGGGGACTGGTAGGAAAAT+GGG + chr6_2:781585-781604 Msa0903570:intron 50.0%
CTGAAATTGGAGAGGGATGC+AGG + chr6_2:781705-781724 Msa0903570:intron 50.0%
CAATAGTGCGGCAATGGTGT+GGG + chr6_2:781732-781751 Msa0903570:intron 50.0%
TGTTGCACTATCGTCACCGT+AGG - chr6_2:781790-781809 None:intergenic 50.0%
TGACGATAGTGCAACAGTGC+TGG + chr6_2:781794-781813 Msa0903570:intron 50.0%
TGTCACCAAATGCATGCGCT+TGG + chr6_2:781920-781939 Msa0903570:intron 50.0%
TGACACCAAGCGCATGCATT+TGG - chr6_2:781928-781947 None:intergenic 50.0%
CGCTATGGAATGCAGAGTAC+AGG + chr6_2:782160-782179 Msa0903570:CDS 50.0%
AGTACAGGATGTCCTTGACG+AGG + chr6_2:782175-782194 Msa0903570:CDS 50.0%
GATGTCCTTGACGAGGAATC+TGG + chr6_2:782182-782201 Msa0903570:CDS 50.0%
AAGAGTTTGGAGGTGAAGGG+TGG + chr6_2:782249-782268 Msa0903570:CDS 50.0%
GGGTGGTGAAGAAGAACATG+GGG + chr6_2:782266-782285 Msa0903570:CDS 50.0%
AGTAATGGCGCAGGAGTCTT+TGG + chr6_2:782345-782364 Msa0903570:CDS 50.0%
! TAAGACGCCATAAAGCGCCA+TGG + chr6_2:782725-782744 Msa0903570:intron 50.0%
GCCTACTTGTGAAGGATGGT+GGG - chr6_2:782753-782772 None:intergenic 50.0%
TGTGGCCTACTTGTGAAGGA+TGG - chr6_2:782757-782776 None:intergenic 50.0%
!! ACTACGCTGGTTTGGGTTGA+AGG + chr6_2:782829-782848 Msa0903570:intron 50.0%
! CACTGCGAAGAGCATAGAGA+TGG - chr6_2:782989-783008 None:intergenic 50.0%
! GCCCCTCCTTAGGCTTTTAT+AGG - chr6_2:783314-783333 None:intergenic 50.0%
GTTGCAGCACTATGGCTTAG+TGG + chr6_2:783813-783832 Msa0903570:intron 50.0%
TCCTCCACTTCCTCTGATGA+CGG - chr6_2:784098-784117 None:intergenic 50.0%
! TAGAGCTAGCTTCCTCGACA+AGG - chr6_2:784160-784179 None:intergenic 50.0%
ACTCATCACCATCATCGTCC+GGG - chr6_2:784223-784242 None:intergenic 50.0%
TGCTAGGTAATCGCGAGAAG+TGG - chr6_2:784261-784280 None:intergenic 50.0%
GGTGATGCGTGAGAGGATGA+AGG - chr6_2:779761-779780 None:intergenic 55.0%
!! GGTTGTTGGTGATGCGTGAG+AGG - chr6_2:779768-779787 None:intergenic 55.0%
GGTGGAGAGATGGGTGAGAT+GGG - chr6_2:779789-779808 None:intergenic 55.0%
TGGTGGAGAGATGGGTGAGA+TGG - chr6_2:779790-779809 None:intergenic 55.0%
GGAAGAAGAGAGAGGGGAGA+GGG - chr6_2:779813-779832 None:intergenic 55.0%
AGGAAGAAGAGAGAGGGGAG+AGG - chr6_2:779814-779833 None:intergenic 55.0%
AAGAGAAAGGGTCGACGGTG+GGG - chr6_2:779847-779866 None:intergenic 55.0%
GAAGAGAAAGGGTCGACGGT+GGG - chr6_2:779848-779867 None:intergenic 55.0%
TGAAGAGAAAGGGTCGACGG+TGG - chr6_2:779849-779868 None:intergenic 55.0%
ACATCCTGCCACCACGTTGA+CGG + chr6_2:779871-779890 Msa0903570:CDS 55.0%
CACTGTGAAGCCACGGTTGA+AGG - chr6_2:779926-779945 None:intergenic 55.0%
CCGGACACACTTCGATCAGA+AGG - chr6_2:780508-780527 None:intergenic 55.0%
TTTCCTACCAGTCCCCACTG+GGG - chr6_2:781583-781602 None:intergenic 55.0%
! GATGCAGGAGCGCAATAGTG+CGG + chr6_2:781720-781739 Msa0903570:intron 55.0%
GCAATAGTGCGGCAATGGTG+TGG + chr6_2:781731-781750 Msa0903570:intron 55.0%
ACTGGTGCACTACCGTCAAC+AGG - chr6_2:781846-781865 None:intergenic 55.0%
ATCACATGCGGATCAAGGGG+CGG + chr6_2:782209-782228 Msa0903570:CDS 55.0%
TACAGCAGCAGTAATGGCGC+AGG + chr6_2:782336-782355 Msa0903570:CDS 55.0%
! CTTTGGAGATTTGCCGCCTC+AGG + chr6_2:782362-782381 Msa0903570:CDS 55.0%
GCCCACCATCCTTCACAAGT+AGG + chr6_2:782749-782768 Msa0903570:intron 55.0%
GGCCTACTTGTGAAGGATGG+TGG - chr6_2:782754-782773 None:intergenic 55.0%
TCGCTGTGGCCTACTTGTGA+AGG - chr6_2:782761-782780 None:intergenic 55.0%
TCGGCCATAACAGATGGCAG+TGG - chr6_2:782799-782818 None:intergenic 55.0%
GGCTCAGACACGCACAAACA+CGG - chr6_2:783205-783224 None:intergenic 55.0%
!! AAAGCCTAAGGAGGGGCGTT+TGG + chr6_2:783317-783336 Msa0903570:intron 55.0%
GGAGTTGAATGCCCAGAAGC+AGG + chr6_2:783650-783669 Msa0903570:intron 55.0%
ATAGCGGCGTTGCAGCACTA+TGG + chr6_2:783805-783824 Msa0903570:intron 55.0%
AATGTCTCGGCCGTCATCAG+AGG + chr6_2:784085-784104 Msa0903570:CDS 55.0%
GACTATCACCCGGACGATGA+TGG + chr6_2:784212-784231 Msa0903570:CDS 55.0%
!! GGAGAGGGTGGTGGAGAGAT+GGG - chr6_2:779798-779817 None:intergenic 60.0%
AGAAGAGAGAGGGGAGAGGG+TGG - chr6_2:779810-779829 None:intergenic 60.0%
GGCGGAGGAAGAAGAGAGAG+GGG - chr6_2:779819-779838 None:intergenic 60.0%
CGGCGGAGGAAGAAGAGAGA+GGG - chr6_2:779820-779839 None:intergenic 60.0%
ACGGCGGAGGAAGAAGAGAG+AGG - chr6_2:779821-779840 None:intergenic 60.0%
AGAGAAAGGGTCGACGGTGG+GGG - chr6_2:779846-779865 None:intergenic 60.0%
CAACGTCGTCTCCGTCAACG+TGG - chr6_2:779885-779904 None:intergenic 60.0%
AGGAAGCTAGGCTACCCCAG+TGG + chr6_2:781566-781585 Msa0903570:intron 60.0%
GGAAGCTAGGCTACCCCAGT+GGG + chr6_2:781567-781586 Msa0903570:intron 60.0%
GAAGCTAGGCTACCCCAGTG+GGG + chr6_2:781568-781587 Msa0903570:intron 60.0%
GGACACCCCGAGTGTGATGT+TGG + chr6_2:781631-781650 Msa0903570:intron 60.0%
CTCGGCCAACATCACACTCG+GGG - chr6_2:781639-781658 None:intergenic 60.0%
CCTCGGCCAACATCACACTC+GGG - chr6_2:781640-781659 None:intergenic 60.0%
GCCTCGGCCAACATCACACT+CGG - chr6_2:781641-781660 None:intergenic 60.0%
GTGTGATGTTGGCCGAGGCT+TGG + chr6_2:781642-781661 Msa0903570:intron 60.0%
CATTCCAACCGGCCAAGCCT+CGG - chr6_2:781657-781676 None:intergenic 60.0%
GGAGCGCAATAGTGCGGCAA+TGG + chr6_2:781726-781745 Msa0903570:intron 60.0%
AGTGCGGCAATGGTGTGGGA+TGG + chr6_2:781736-781755 Msa0903570:intron 60.0%
GCTGGAATGGCACTGTGACG+AGG + chr6_2:781812-781831 Msa0903570:intron 60.0%
GCTTCCAAACGCCCCTCCTT+AGG - chr6_2:783324-783343 None:intergenic 60.0%
TCGGCCGTCATCAGAGGAAG+TGG + chr6_2:784091-784110 Msa0903570:CDS 60.0%
GCCGTCATCAGAGGAAGTGG+AGG + chr6_2:784094-784113 Msa0903570:CDS 60.0%
!! GGGAGAGGGTGGTGGAGAGA+TGG - chr6_2:779799-779818 None:intergenic 65.0%
AGAGAGAGGGGAGAGGGTGG+TGG - chr6_2:779807-779826 None:intergenic 65.0%
AGAAAGGGTCGACGGTGGGG+GGG - chr6_2:779844-779863 None:intergenic 65.0%
GAGAAAGGGTCGACGGTGGG+GGG - chr6_2:779845-779864 None:intergenic 65.0%
GTCTCCGTCAACGTGGTGGC+AGG - chr6_2:779878-779897 None:intergenic 65.0%
CGTCGTCTCCGTCAACGTGG+TGG - chr6_2:779882-779901 None:intergenic 65.0%
TAGGCTACCCCAGTGGGGAC+TGG + chr6_2:781573-781592 Msa0903570:intron 65.0%
! CTACCCCAGTGGGGACTGGT+AGG + chr6_2:781577-781596 Msa0903570:intron 65.0%
CCCGAGTGTGATGTTGGCCG+AGG + chr6_2:781637-781656 Msa0903570:intron 65.0%
GATGTTGGCCGAGGCTTGGC+CGG + chr6_2:781646-781665 Msa0903570:intron 65.0%
GTGGGCGCCATGGCGCTTTA+TGG - chr6_2:782735-782754 None:intergenic 65.0%
!! GTGAAGGATGGTGGGCGCCA+TGG - chr6_2:782745-782764 None:intergenic 65.0%
TTGGCCGAGGCTTGGCCGGT+TGG + chr6_2:781650-781669 Msa0903570:intron 70.0%
AGGGTCGACGGTGGGGGGGA+CGG - chr6_2:779840-779859 None:intergenic 75.0%
! GTCGACGGTGGGGGGGACGG+CGG - chr6_2:779837-779856 None:intergenic 80.0%
! GACGGTGGGGGGGACGGCGG+AGG - chr6_2:779834-779853 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 779501 785027 779501 ID=Msa0903570;Name=Msa0903570
chr6_2 mRNA 779501 785027 779501 ID=Msa0903570-mRNA-1;Parent=Msa0903570;Name=Msa0903570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|0.75|1|1|0.75|0.6|5|271|328
chr6_2 exon 779501 779548 779501 ID=Msa0903570-mRNA-1:exon:304;Parent=Msa0903570-mRNA-1
chr6_2 exon 779570 780142 779570 ID=Msa0903570-mRNA-1:exon:305;Parent=Msa0903570-mRNA-1
chr6_2 exon 782155 782434 782155 ID=Msa0903570-mRNA-1:exon:306;Parent=Msa0903570-mRNA-1
chr6_2 exon 784077 784294 784077 ID=Msa0903570-mRNA-1:exon:307;Parent=Msa0903570-mRNA-1
chr6_2 exon 784681 785027 784681 ID=Msa0903570-mRNA-1:exon:308;Parent=Msa0903570-mRNA-1
chr6_2 five_prime_UTR 779501 779548 779501 ID=Msa0903570-mRNA-1:five_prime_utr;Parent=Msa0903570-mRNA-1
chr6_2 five_prime_UTR 779570 779729 779570 ID=Msa0903570-mRNA-1:five_prime_utr;Parent=Msa0903570-mRNA-1
chr6_2 CDS 779730 780142 779730 ID=Msa0903570-mRNA-1:cds;Parent=Msa0903570-mRNA-1
chr6_2 CDS 782155 782434 782155 ID=Msa0903570-mRNA-1:cds;Parent=Msa0903570-mRNA-1
chr6_2 CDS 784077 784294 784077 ID=Msa0903570-mRNA-1:cds;Parent=Msa0903570-mRNA-1
chr6_2 CDS 784681 784756 784681 ID=Msa0903570-mRNA-1:cds;Parent=Msa0903570-mRNA-1
chr6_2 three_prime_UTR 784757 785027 784757 ID=Msa0903570-mRNA-1:three_prime_utr;Parent=Msa0903570-mRNA-1
Gene Sequence

>Msa0903570

ATGGCAGCATCAACAATTTCATCTCAACCCTTCATCCTCTCACGCATCACCAACAACCCATCTCACCCATCTCTCCACCACCCTCTCCCCTCTCTCTTCTTCCTCCGCCGTCCCCCCCACCGTCGACCCTTTCTCTTCACTACATCCTGCCACCACGTTGACGGAGACGACGTTGTTTCGACGCGTAAATCAACCTTCAACCGTGGCTTCACAGTGATATCTAAAATGCTTCGACGTATCAAACCTCTCGATAACTCCGTTATCTCTAAAGGTGTTTCTGAAGCTTCTAAAGATTCTATGAAACAAACTATTTCTACTATGCTTGGTTTGTTACCTTCTGATCATTTTGATGTTACTGTTAGTTTTGAGATTCAACCTCTTCATCGGTTACTTGTTTCTTCTATCATCACTGGGTACACGCTATGGAATGCAGAGTACAGGATGTCCTTGACGAGGAATCTGGAAATATCACATGCGGATCAAGGGGCGGATTGTGAAACGCCTTTAAAGAGTTTGGAGGTGAAGGGTGGTGAAGAAGAACATGGGGAAACTGAGAAGGTTGTTTCTGATTTGGGGTTAGCGAATTCGGAAACTTACAGCAGCAGTAATGGCGCAGGAGTCTTTGGAGATTTGCCGCCTCAGGCTCTGAAATACATTCAGCAGTTGCAGTCTGAGTTGACAAACATGAAGGAGGTGACTGAAATGTCTCGGCCGTCATCAGAGGAAGTGGAGGATATAATTCACCAACTTGTTCAAAACATTTTGAGAAGATTCCTTGTCGAGGAAGCTAGCTCTAACTTTATGGAACAATCAGTCGAAGGAAACATAGACTATCACCCGGACGATGATGGTGATGAGTTTAGTGATAAAATAGCCACTTCTCGCGATTACCTAGCAAAGTTGCTTTTCTGGTGTATGTTATTAGGTCATCACTTAAGAGGATTGGAAAACAGATTGCATTTGAGCTGTGTTGTCGGACTTTTATAG

Protein sequence

>Msa0903570

MAASTISSQPFILSRITNNPSHPSLHHPLPSLFFLRRPPHRRPFLFTTSCHHVDGDDVVSTRKSTFNRGFTVISKMLRRIKPLDNSVISKGVSEASKDSMKQTISTMLGLLPSDHFDVTVSFEIQPLHRLLVSSIITGYTLWNAEYRMSLTRNLEISHADQGADCETPLKSLEVKGGEEEHGETEKVVSDLGLANSETYSSSNGAGVFGDLPPQALKYIQQLQSELTNMKEVTEMSRPSSEEVEDIIHQLVQNILRRFLVEEASSNFMEQSVEGNIDYHPDDDGDEFSDKIATSRDYLAKLLFWCMLLGHHLRGLENRLHLSCVVGLL*