AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0755480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755480 MtrunA17_Chr5g0400351 75.224 335 31 6 1 298 22 341 3.02e-133 385
Msa0755480 MtrunA17_Chr1g0175161 34.252 254 124 13 3 244 18 240 2.34e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0755480 AT3G57990.1 35.000 220 100 8 3 211 17 204 5.27e-23 99.4

Find 74 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCTTGTGTTGGTGTTA+TGG 0.239203 5_2:-9264957 Msa0755480:CDS
AGGCGAGAGCTTTCAAAGTT+TGG 0.275425 5_2:-9262336 Msa0755480:CDS
GAATGTTGAGAAGGAGAATA+AGG 0.275772 5_2:-9264723 Msa0755480:CDS
GAAGAGAGAAATGACCAAAT+TGG 0.284719 5_2:+9265206 None:intergenic
GGGTTGTTGAATATTGTTAT+TGG 0.296129 5_2:+9265514 None:intergenic
GGGGTTGAAAATGCCATATT+TGG 0.313158 5_2:-9264861 Msa0755480:CDS
TAATGTTGAGAAGGAGAATA+AGG 0.339001 5_2:-9262429 Msa0755480:intron
AAGAGAGAAATGACCAAATT+GGG 0.341710 5_2:+9265207 None:intergenic
TTTCCTGAAGGGTGTTCTTC+CGG 0.343308 5_2:-9265085 Msa0755480:intron
GTTTCAAAGCAGAAGCATTC+AGG 0.351868 5_2:-9262356 Msa0755480:CDS
TTACACTTTAAACCCCAATT+TGG 0.351935 5_2:-9265220 Msa0755480:CDS
AAGCAGAAGCAGAAGCATTC+AGG 0.352808 5_2:-9264632 Msa0755480:CDS
GGTGAGAGCTTTCAAAGTTT+AGG 0.356862 5_2:-9264611 Msa0755480:CDS
GAAGGAGATGAAAATGGATT+TGG 0.357391 5_2:-9264747 Msa0755480:CDS
ATTGTTGAATGAGATGAAAA+TGG 0.365578 5_2:-9264690 Msa0755480:CDS
GCTAGAATTAGTAACAGTTT+TGG 0.366611 5_2:+9265150 None:intergenic
AGTGTTGGATGAAATGAAAA+TGG 0.373572 5_2:-9262396 Msa0755480:CDS
TTCTCTCTCTCCCTCAAATC+CGG 0.384397 5_2:-9265346 Msa0755480:intron
ACAACGTTGGTGTTGGTGTT+GGG 0.388448 5_2:-9265018 Msa0755480:CDS
CTTTCAACAAATTTCCCAAC+TGG 0.401458 5_2:-9265433 Msa0755480:CDS
GAAGAAGTTGTGGTTGTTGT+TGG 0.403361 5_2:+9265385 None:intergenic
GGTGCTGAAGGAGATGAAAA+TGG 0.412755 5_2:-9264753 Msa0755480:CDS
TGTTTCACCTCAAATTGAAA+AGG 0.413802 5_2:-9265119 Msa0755480:CDS
AGAAGTTGAGTAGTTATTTG+TGG 0.420121 5_2:+9265471 None:intergenic
CGGTTGGCAAAATTTGAACT+TGG 0.433091 5_2:-9265065 Msa0755480:CDS
ATGAAAATGGGAGTTTCTAA+AGG 0.436835 5_2:-9262383 Msa0755480:CDS
ATGAAAATGGGAGTTTCTAA+AGG 0.436835 5_2:-9264677 Msa0755480:CDS
AATTTGAACTTGGAACCATT+TGG 0.450192 5_2:-9265055 Msa0755480:CDS
GTTTCACCTCAAATTGAAAA+GGG 0.450632 5_2:-9265118 Msa0755480:intron
CTGAAGGGTGTTCTTCCGGT+TGG 0.461829 5_2:-9265081 Msa0755480:intron
AGGAAGAAGAGGGGTAGAAG+AGG 0.462267 5_2:+9265252 None:intergenic
TGGAGAGTAAGAGAGTTTGA+AGG 0.463503 5_2:+9265405 None:intergenic
GTTTGAAGGTTGGACCAGTT+GGG 0.475548 5_2:+9265419 None:intergenic
AGTTTGAAGGTTGGACCAGT+TGG 0.477278 5_2:+9265418 None:intergenic
TTGTTGTTATTGTGACCAAA+TGG 0.479560 5_2:+9265040 None:intergenic
AACAACAACCCTTGTGTCAC+CGG 0.481710 5_2:+9264920 None:intergenic
AAGACCTAAACCGGATTTGA+GGG 0.482511 5_2:+9265336 None:intergenic
AAGAGAAAGAAGGAAGAAGA+GGG 0.484937 5_2:+9265242 None:intergenic
CAACGTTGGTGTTGGTGTTG+GGG 0.488480 5_2:-9265017 Msa0755480:CDS
AGTTTGGACAGCAATAGAAA+TGG 0.491188 5_2:-9262320 Msa0755480:CDS
TAAGGTTAGGAAGAGAGTGT+TGG 0.492559 5_2:-9262411 Msa0755480:CDS
CTGTGATAGTTGAAAGTAAA+GGG 0.504099 5_2:+9265494 None:intergenic
AAAGACCTAAACCGGATTTG+AGG 0.506868 5_2:+9265335 None:intergenic
TTGAGAAGGAGAATAAGGTT+AGG 0.512436 5_2:-9262424 Msa0755480:intron
GATTTGAGGGAGAGAGAGAA+AGG 0.514169 5_2:+9265349 None:intergenic
AATGGGAGTTTCTAAAGGGA+AGG 0.515092 5_2:-9264672 Msa0755480:CDS
TGAAAATGGGAGTTTCTAAA+GGG 0.517630 5_2:-9262382 Msa0755480:CDS
AACAACGTTGGTGTTGGTGT+TGG 0.518386 5_2:-9265019 Msa0755480:CDS
AGAAGAAAGAGAGAAATTAG+CGG 0.537805 5_2:+9265279 None:intergenic
TTGTTGAATGAGATGAAAAT+GGG 0.539773 5_2:-9264689 Msa0755480:CDS
TGAAAATGGGAGTTTCTAAA+GGG 0.540370 5_2:-9264676 Msa0755480:CDS
AAAGAGAAAGAAGGAAGAAG+AGG 0.540783 5_2:+9265241 None:intergenic
ATTTGAGGTGAAACAGAAAG+AGG 0.542815 5_2:+9265127 None:intergenic
TTAAAGTGTAAAGAGAAAGA+AGG 0.545511 5_2:+9265232 None:intergenic
GTGTTGGATGAAATGAAAAT+GGG 0.556776 5_2:-9262395 Msa0755480:CDS
AACAACAACAACGTTGGTGT+TGG 0.556990 5_2:-9265025 Msa0755480:CDS
TATGGCTAGGACGGTGATGC+CGG 0.560278 5_2:-9264939 Msa0755480:CDS
ACGGTGATGCCGGTGACACA+AGG 0.562748 5_2:-9264929 Msa0755480:CDS
AGAGAAAGAAGGAAGAAGAG+GGG 0.566909 5_2:+9265243 None:intergenic
GGATTTGGAGAATGTTGAGA+AGG 0.568307 5_2:-9264732 Msa0755480:CDS
CTTGTGTTGGTGTTATGGCT+AGG 0.572621 5_2:-9264952 Msa0755480:CDS
GAGTAAGAGAGTTTGAAGGT+TGG 0.580998 5_2:+9265409 None:intergenic
CACAATAACAACAACAACGT+TGG 0.585359 5_2:-9265031 Msa0755480:CDS
TATGGTCTTTCACCTTGTGT+TGG 0.586817 5_2:-9264965 Msa0755480:CDS
GGTGTAAGAATCTGAGAGAA+CGG 0.587778 5_2:+9265177 None:intergenic
AGGTGATTTGCAGGTGCTGA+AGG 0.592161 5_2:-9264765 Msa0755480:intron
AAGACAAGAGGAGAATGATG+AGG 0.617004 5_2:+9265304 None:intergenic
TTTGAGGTGAAACAGAAAGA+GGG 0.620965 5_2:+9265128 None:intergenic
AGAGAGAAATGACCAAATTG+GGG 0.622142 5_2:+9265208 None:intergenic
TGTTGGTGTTATGGCTAGGA+CGG 0.624391 5_2:-9264948 Msa0755480:CDS
GCTGTGATAGTTGAAAGTAA+AGG 0.627420 5_2:+9265493 None:intergenic
AAATTAGCGGAGAAGACAAG+AGG 0.646343 5_2:+9265292 None:intergenic
CTAGCCATAACACCAACACA+AGG 0.698523 5_2:+9264953 None:intergenic
CGGTGATGCCGGTGACACAA+GGG 0.700522 5_2:-9264928 Msa0755480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTTTTTAATAGTTATT+TGG + chr5_2:9264153-9264172 None:intergenic 10.0%
!! TAATGAAAAACAATGAAAAT+TGG + chr5_2:9263301-9263320 None:intergenic 15.0%
!! TGTGTAATAATTAGATTATT+TGG - chr5_2:9263505-9263524 Msa0755480:intron 15.0%
!! GTGTAATAATTAGATTATTT+GGG - chr5_2:9263506-9263525 Msa0755480:intron 15.0%
!! AAACATTAATCAATATATGT+TGG + chr5_2:9263655-9263674 None:intergenic 15.0%
!!! CTTTTTTGTTAGTATTTTTA+TGG - chr5_2:9264059-9264078 Msa0755480:intron 15.0%
!! AAAAAATTCTTAGAATCAAA+AGG + chr5_2:9264958-9264977 None:intergenic 15.0%
!! AAAAATCATAAAAGCAAAAA+AGG + chr5_2:9264984-9265003 None:intergenic 15.0%
!! ATTTAAAAATAATGTTGAGA+AGG - chr5_2:9265296-9265315 Msa0755480:CDS 15.0%
!! TTCATTATACTTTCTATGTT+TGG - chr5_2:9263314-9263333 Msa0755480:intron 20.0%
!! AAAATTATTTAACAGTACAC+CGG + chr5_2:9263418-9263437 None:intergenic 20.0%
!! TGATTAATGATACTTCTATA+TGG - chr5_2:9263445-9263464 Msa0755480:intron 20.0%
!! TAATAATTAGATTATTTGGG+TGG - chr5_2:9263509-9263528 Msa0755480:intron 20.0%
!! AAAAATAACAAGTTTCTTCT+TGG + chr5_2:9263548-9263567 None:intergenic 20.0%
!! TAAGACTAAAAGAATTCATT+TGG - chr5_2:9263847-9263866 Msa0755480:intron 20.0%
!!! AAGAATTCATTTGGTAATAT+TGG - chr5_2:9263856-9263875 Msa0755480:intron 20.0%
!! TTAAAAAAAAGAAACACTCA+TGG - chr5_2:9264161-9264180 Msa0755480:intron 20.0%
!! TTTAGACATTGATGTATATA+GGG + chr5_2:9264310-9264329 None:intergenic 20.0%
!!! TTTTAGACATTGATGTATAT+AGG + chr5_2:9264311-9264330 None:intergenic 20.0%
!! CAAAAAGGGAAAAAAAAATT+GGG + chr5_2:9264910-9264929 None:intergenic 20.0%
!! AAAAATCAAAGAAGCAAAAA+GGG + chr5_2:9264924-9264943 None:intergenic 20.0%
!! AAAAAATCAAAGAAGCAAAA+AGG + chr5_2:9264925-9264944 None:intergenic 20.0%
!! AAGCATAAGGAAAAAAAATT+GGG + chr5_2:9265153-9265172 None:intergenic 20.0%
!! TATGATATACAGAAGAAAAA+GGG + chr5_2:9265191-9265210 None:intergenic 20.0%
!! TTATGATATACAGAAGAAAA+AGG + chr5_2:9265192-9265211 None:intergenic 20.0%
!! TTCTGTATATCATAAAGTAA+AGG - chr5_2:9265197-9265216 Msa0755480:CDS 20.0%
! TTAAAGTGTAAAGAGAAAGA+AGG + chr5_2:9262505-9262524 None:intergenic 25.0%
! GCTAAAAACAGTGAAAAATA+TGG - chr5_2:9262751-9262770 Msa0755480:intron 25.0%
!! ATTTTATTCACTGCCAAATA+TGG + chr5_2:9262889-9262908 None:intergenic 25.0%
! TATTTGGCAGTGAATAAAAT+TGG - chr5_2:9262889-9262908 Msa0755480:intron 25.0%
! ATTTGGCAGTGAATAAAATT+GGG - chr5_2:9262890-9262909 Msa0755480:intron 25.0%
! ATTGTTGAATGAGATGAAAA+TGG - chr5_2:9263044-9263063 Msa0755480:intron 25.0%
! TTGTTGAATGAGATGAAAAT+GGG - chr5_2:9263045-9263064 Msa0755480:intron 25.0%
! AGTTTAGGAAGCAATAAAAA+TGG - chr5_2:9263138-9263157 Msa0755480:intron 25.0%
! TCTACTTGTTCATATAGAAT+AGG - chr5_2:9263803-9263822 Msa0755480:intron 25.0%
!!! ATTTGGTAATATTGGTTCAT+TGG - chr5_2:9263864-9263883 Msa0755480:intron 25.0%
!!! TTTTAACTCTTGAAAATCTG+TGG - chr5_2:9263975-9263994 Msa0755480:intron 25.0%
!!! TTCGAATGTGTTTTTTTTGT+TGG + chr5_2:9264095-9264114 None:intergenic 25.0%
! AATATGTAAAAGCAGATTTG+AGG - chr5_2:9264125-9264144 Msa0755480:intron 25.0%
! TCATGGATGTATTTGTATTT+GGG - chr5_2:9264178-9264197 Msa0755480:intron 25.0%
!!! TTAAGCAACTATTTTGATCA+AGG + chr5_2:9264242-9264261 None:intergenic 25.0%
! TACATCAATGTCTAAAAGAT+CGG - chr5_2:9264314-9264333 Msa0755480:intron 25.0%
!! AACAGTAGTGTTGTTAATAA+AGG - chr5_2:9264472-9264491 Msa0755480:intron 25.0%
!! ACAGTAGTGTTGTTAATAAA+GGG - chr5_2:9264473-9264492 Msa0755480:intron 25.0%
! AAATAGATGTGTTTGTGAAA+AGG - chr5_2:9264588-9264607 Msa0755480:CDS 25.0%
! GCAAAAAGGGAAAAAAAAAT+TGG + chr5_2:9264911-9264930 None:intergenic 25.0%
! GAAGCATAAGGAAAAAAAAT+TGG + chr5_2:9265154-9265173 None:intergenic 25.0%
!! AAAAAAAACTCAGAAGCATA+AGG + chr5_2:9265166-9265185 None:intergenic 25.0%
GGGTTGTTGAATATTGTTAT+TGG + chr5_2:9262223-9262242 None:intergenic 30.0%
CTGTGATAGTTGAAAGTAAA+GGG + chr5_2:9262243-9262262 None:intergenic 30.0%
AGAAGTTGAGTAGTTATTTG+TGG + chr5_2:9262266-9262285 None:intergenic 30.0%
AGAAGAAAGAGAGAAATTAG+CGG + chr5_2:9262458-9262477 None:intergenic 30.0%
TTACACTTTAAACCCCAATT+TGG - chr5_2:9262514-9262533 Msa0755480:intron 30.0%
AAGAGAGAAATGACCAAATT+GGG + chr5_2:9262530-9262549 None:intergenic 30.0%
!! ATTAGTAACAGTTTTGGTGT+TGG + chr5_2:9262581-9262600 None:intergenic 30.0%
! GCTAGAATTAGTAACAGTTT+TGG + chr5_2:9262587-9262606 None:intergenic 30.0%
TGTTTCACCTCAAATTGAAA+AGG - chr5_2:9262615-9262634 Msa0755480:intron 30.0%
GTTTCACCTCAAATTGAAAA+GGG - chr5_2:9262616-9262635 Msa0755480:intron 30.0%
AATTTGAACTTGGAACCATT+TGG - chr5_2:9262679-9262698 Msa0755480:intron 30.0%
! TTGTTGTTATTGTGACCAAA+TGG + chr5_2:9262697-9262716 None:intergenic 30.0%
!!! TTTCACTGTTTTTAGCATCT+GGG + chr5_2:9262747-9262766 None:intergenic 30.0%
!!! TTTTCACTGTTTTTAGCATC+TGG + chr5_2:9262748-9262767 None:intergenic 30.0%
!! GTTGTTGTTGAATTTTCGTT+GGG - chr5_2:9262828-9262847 Msa0755480:intron 30.0%
!! TTGTTGTTGAATTTTCGTTG+GGG - chr5_2:9262829-9262848 Msa0755480:intron 30.0%
AAGAAATGAAGAAAGATGAG+TGG - chr5_2:9262926-9262945 Msa0755480:intron 30.0%
AACAACGATGATAATTGTGA+AGG - chr5_2:9262949-9262968 Msa0755480:intron 30.0%
ATGAAAATGGGAGTTTCTAA+AGG - chr5_2:9263057-9263076 Msa0755480:intron 30.0%
TGAAAATGGGAGTTTCTAAA+GGG - chr5_2:9263058-9263077 Msa0755480:intron 30.0%
! GAGTGATTTTGAATCTGAAT+TGG - chr5_2:9263212-9263231 Msa0755480:intron 30.0%
TCTTCTTAGCAACGATTTAA+AGG - chr5_2:9263261-9263280 Msa0755480:intron 30.0%
ATTATTTGGGTGGAGTAAAA+AGG - chr5_2:9263519-9263538 Msa0755480:intron 30.0%
ACAAGTAGAAAGCTGAAAAT+AGG + chr5_2:9263792-9263811 None:intergenic 30.0%
CTCATGGATGTATTTGTATT+TGG - chr5_2:9264177-9264196 Msa0755480:intron 30.0%
! TTTTGATCAAGGAATGTATG+AGG + chr5_2:9264231-9264250 None:intergenic 30.0%
ACATCAATGTCTAAAAGATC+GGG - chr5_2:9264315-9264334 Msa0755480:intron 30.0%
!!! TTTTCTGATGGGTTTTACAT+TGG - chr5_2:9264339-9264358 Msa0755480:intron 30.0%
TATTGTTGCTAATATGTCTC+CGG - chr5_2:9264383-9264402 Msa0755480:intron 30.0%
! GTTTGGTTGGTTCATATATT+TGG + chr5_2:9264445-9264464 None:intergenic 30.0%
TTGAAAAATTAGTCCCACAT+CGG - chr5_2:9264520-9264539 Msa0755480:intron 30.0%
ACTACTTACTGAGAATCAAA+AGG + chr5_2:9265012-9265031 None:intergenic 30.0%
AAGTAGTTGTGTTCATGAAA+AGG - chr5_2:9265025-9265044 Msa0755480:CDS 30.0%
TAATGTTGAGAAGGAGAATA+AGG - chr5_2:9265305-9265324 Msa0755480:CDS 30.0%
! AGTGTTGGATGAAATGAAAA+TGG - chr5_2:9265338-9265357 Msa0755480:intron 30.0%
GTGTTGGATGAAATGAAAAT+GGG - chr5_2:9265339-9265358 Msa0755480:intron 30.0%
ATGAAAATGGGAGTTTCTAA+AGG - chr5_2:9263057-9263076 Msa0755480:intron 30.0%
TGAAAATGGGAGTTTCTAAA+GGG - chr5_2:9263058-9263077 Msa0755480:intron 30.0%
! GAGTGATTTTGAATCTGAAT+TGG - chr5_2:9263212-9263231 Msa0755480:intron 30.0%
GCTGTGATAGTTGAAAGTAA+AGG + chr5_2:9262244-9262263 None:intergenic 35.0%
CTTTCAACAAATTTCCCAAC+TGG - chr5_2:9262301-9262320 Msa0755480:CDS 35.0%
AGAAGAAGAAGAAGAAGTTG+TGG + chr5_2:9262362-9262381 None:intergenic 35.0%
! AAATCCGGTTTAGGTCTTTT+TGG - chr5_2:9262403-9262422 Msa0755480:CDS 35.0%
TGAACCAAAAAGACCTAAAC+CGG + chr5_2:9262410-9262429 None:intergenic 35.0%
AAGAGAAAGAAGGAAGAAGA+GGG + chr5_2:9262495-9262514 None:intergenic 35.0%
AAAGAGAAAGAAGGAAGAAG+AGG + chr5_2:9262496-9262515 None:intergenic 35.0%
AGAGAGAAATGACCAAATTG+GGG + chr5_2:9262529-9262548 None:intergenic 35.0%
GAAGAGAGAAATGACCAAAT+TGG + chr5_2:9262531-9262550 None:intergenic 35.0%
! TTTGAGGTGAAACAGAAAGA+GGG + chr5_2:9262609-9262628 None:intergenic 35.0%
! ATTTGAGGTGAAACAGAAAG+AGG + chr5_2:9262610-9262629 None:intergenic 35.0%
! ACACAACCCTTTTCAATTTG+AGG + chr5_2:9262625-9262644 None:intergenic 35.0%
! CAAGTTCAAATTTTGCCAAC+CGG + chr5_2:9262671-9262690 None:intergenic 35.0%
CACAATAACAACAACAACGT+TGG - chr5_2:9262703-9262722 Msa0755480:intron 35.0%
!! GGTTGTTGTTGAATTTTCGT+TGG - chr5_2:9262827-9262846 Msa0755480:intron 35.0%
!! TGAATAAAATTGGGTTGGAG+AGG - chr5_2:9262899-9262918 Msa0755480:intron 35.0%
!! GAATAAAATTGGGTTGGAGA+GGG - chr5_2:9262900-9262919 Msa0755480:intron 35.0%
! TAATTGTGAAGGTGATTTGC+AGG - chr5_2:9262960-9262979 Msa0755480:intron 35.0%
! GAAGGAGATGAAAATGGATT+TGG - chr5_2:9262987-9263006 Msa0755480:intron 35.0%
GAATGTTGAGAAGGAGAATA+AGG - chr5_2:9263011-9263030 Msa0755480:intron 35.0%
GGATACAGAATTCGAGTAAT+GGG + chr5_2:9263397-9263416 None:intergenic 35.0%
CATTACTCGAATTCTGTATC+CGG - chr5_2:9263396-9263415 Msa0755480:intron 35.0%
CTTCACAAACATAGTTGCTA+AGG - chr5_2:9263696-9263715 Msa0755480:intron 35.0%
TCGAAATCAGAGAGAAATCA+AGG + chr5_2:9263903-9263922 None:intergenic 35.0%
ATTTCTCTCTGATTTCGATC+TGG - chr5_2:9263905-9263924 Msa0755480:intron 35.0%
TGATCCAGTAATTTGAGGAA+TGG + chr5_2:9264285-9264304 None:intergenic 35.0%
! AAAAGATCGGGATTTTCTGA+TGG - chr5_2:9264327-9264346 Msa0755480:intron 35.0%
! AAAGATCGGGATTTTCTGAT+GGG - chr5_2:9264328-9264347 Msa0755480:intron 35.0%
AAACATATGCCTCATGATAC+CGG + chr5_2:9264405-9264424 None:intergenic 35.0%
! GGCATATGTTTTCAAAAGCA+AGG - chr5_2:9264414-9264433 Msa0755480:intron 35.0%
ACTGTTAGACATAGTTTGGT+TGG + chr5_2:9264458-9264477 None:intergenic 35.0%
CACTACTGTTAGACATAGTT+TGG + chr5_2:9264462-9264481 None:intergenic 35.0%
TGAAAAATTAGTCCCACATC+GGG - chr5_2:9264521-9264540 Msa0755480:intron 35.0%
! TTTGTGTTATTACCCGATGT+GGG + chr5_2:9264536-9264555 None:intergenic 35.0%
TTGAGAAGGAGAATAAGGTT+AGG - chr5_2:9265310-9265329 Msa0755480:CDS 35.0%
AGTTTGGACAGCAATAGAAA+TGG - chr5_2:9265414-9265433 Msa0755480:CDS 35.0%
GAGTAAGAGAGTTTGAAGGT+TGG + chr5_2:9262328-9262347 None:intergenic 40.0%
TGGAGAGTAAGAGAGTTTGA+AGG + chr5_2:9262332-9262351 None:intergenic 40.0%
GAAGAAGTTGTGGTTGTTGT+TGG + chr5_2:9262352-9262371 None:intergenic 40.0%
AAGACCTAAACCGGATTTGA+GGG + chr5_2:9262401-9262420 None:intergenic 40.0%
AAAGACCTAAACCGGATTTG+AGG + chr5_2:9262402-9262421 None:intergenic 40.0%
AAGACAAGAGGAGAATGATG+AGG + chr5_2:9262433-9262452 None:intergenic 40.0%
AAATTAGCGGAGAAGACAAG+AGG + chr5_2:9262445-9262464 None:intergenic 40.0%
AGAGAAAGAAGGAAGAAGAG+GGG + chr5_2:9262494-9262513 None:intergenic 40.0%
GGTGTAAGAATCTGAGAGAA+CGG + chr5_2:9262560-9262579 None:intergenic 40.0%
! GTTGTGTTCCTTTTCCTGAA+GGG - chr5_2:9262638-9262657 Msa0755480:intron 40.0%
CGGTTGGCAAAATTTGAACT+TGG - chr5_2:9262669-9262688 Msa0755480:intron 40.0%
AACAACAACAACGTTGGTGT+TGG - chr5_2:9262709-9262728 Msa0755480:intron 40.0%
TATGGTCTTTCACCTTGTGT+TGG - chr5_2:9262769-9262788 Msa0755480:intron 40.0%
!! TTCACCTTGTGTTGGTGTTA+TGG - chr5_2:9262777-9262796 Msa0755480:intron 40.0%
! TGTGAGTTTTCCAGGGAAAT+CGG - chr5_2:9262852-9262871 Msa0755480:intron 40.0%
GGGGTTGAAAATGCCATATT+TGG - chr5_2:9262873-9262892 Msa0755480:intron 40.0%
GGCAGTGAATAAAATTGGGT+TGG - chr5_2:9262894-9262913 Msa0755480:intron 40.0%
GGATTTGGAGAATGTTGAGA+AGG - chr5_2:9263002-9263021 Msa0755480:intron 40.0%
! AATGGGAGTTTCTAAAGGGA+AGG - chr5_2:9263062-9263081 Msa0755480:intron 40.0%
GGTGAGAGCTTTCAAAGTTT+AGG - chr5_2:9263123-9263142 Msa0755480:intron 40.0%
CGGATACAGAATTCGAGTAA+TGG + chr5_2:9263398-9263417 None:intergenic 40.0%
CACAAACATAGTTGCTAAGG+TGG - chr5_2:9263699-9263718 Msa0755480:intron 40.0%
!! GTGTTTGCAAAGTTCTAGAG+AGG + chr5_2:9264028-9264047 None:intergenic 40.0%
TGGAGGGCTGGATAAAAAAA+TGG + chr5_2:9264265-9264284 None:intergenic 40.0%
CCAGTAATTTGAGGAATGGA+GGG + chr5_2:9264281-9264300 None:intergenic 40.0%
TCCAGTAATTTGAGGAATGG+AGG + chr5_2:9264282-9264301 None:intergenic 40.0%
AATATGTCTCCGGTATCATG+AGG - chr5_2:9264393-9264412 Msa0755480:intron 40.0%
TGTTTGAGTATGTGAAGAGG+TGG - chr5_2:9264496-9264515 Msa0755480:intron 40.0%
! GTTTGTGTTATTACCCGATG+TGG + chr5_2:9264537-9264556 None:intergenic 40.0%
GTGTTTGTGAAAAGGAGAGA+TGG - chr5_2:9264596-9264615 Msa0755480:CDS 40.0%
TTGTGAAAAGGAGAGATGGT+TGG - chr5_2:9264600-9264619 Msa0755480:CDS 40.0%
TCATGAAAAGGAGAGATGCT+TGG - chr5_2:9265037-9265056 Msa0755480:CDS 40.0%
! TAAGGTTAGGAAGAGAGTGT+TGG - chr5_2:9265323-9265342 Msa0755480:intron 40.0%
!! GTTTCAAAGCAGAAGCATTC+AGG - chr5_2:9265378-9265397 Msa0755480:CDS 40.0%
GTTTGAAGGTTGGACCAGTT+GGG + chr5_2:9262318-9262337 None:intergenic 45.0%
AGTTTGAAGGTTGGACCAGT+TGG + chr5_2:9262319-9262338 None:intergenic 45.0%
GATTTGAGGGAGAGAGAGAA+AGG + chr5_2:9262388-9262407 None:intergenic 45.0%
TTCTCTCTCTCCCTCAAATC+CGG - chr5_2:9262388-9262407 Msa0755480:CDS 45.0%
! GGTTGTGTTCCTTTTCCTGA+AGG - chr5_2:9262637-9262656 Msa0755480:intron 45.0%
GAAGAACACCCTTCAGGAAA+AGG + chr5_2:9262649-9262668 None:intergenic 45.0%
!! TTTCCTGAAGGGTGTTCTTC+CGG - chr5_2:9262649-9262668 Msa0755480:intron 45.0%
!! AACAACGTTGGTGTTGGTGT+TGG - chr5_2:9262715-9262734 Msa0755480:intron 45.0%
!! ACAACGTTGGTGTTGGTGTT+GGG - chr5_2:9262716-9262735 Msa0755480:intron 45.0%
CTAGCCATAACACCAACACA+AGG + chr5_2:9262784-9262803 None:intergenic 45.0%
!! CTTGTGTTGGTGTTATGGCT+AGG - chr5_2:9262782-9262801 Msa0755480:intron 45.0%
!! TGTTGGTGTTATGGCTAGGA+CGG - chr5_2:9262786-9262805 Msa0755480:intron 45.0%
AACAACAACCCTTGTGTCAC+CGG + chr5_2:9262817-9262836 None:intergenic 45.0%
! GTGAGTTTTCCAGGGAAATC+GGG - chr5_2:9262853-9262872 Msa0755480:intron 45.0%
! TGAGTTTTCCAGGGAAATCG+GGG - chr5_2:9262854-9262873 Msa0755480:intron 45.0%
! ATTTTCAACCCCGATTTCCC+TGG + chr5_2:9262865-9262884 None:intergenic 45.0%
! GGTGCTGAAGGAGATGAAAA+TGG - chr5_2:9262981-9263000 Msa0755480:intron 45.0%
!! AAGCAGAAGCAGAAGCATTC+AGG - chr5_2:9263102-9263121 Msa0755480:intron 45.0%
! TTCTAGAGAGGTTGTGGTGT+GGG + chr5_2:9264016-9264035 None:intergenic 45.0%
!! GCAAAGTTCTAGAGAGGTTG+TGG + chr5_2:9264022-9264041 None:intergenic 45.0%
TAATTTGAGGAATGGAGGGC+TGG + chr5_2:9264277-9264296 None:intergenic 45.0%
CCCTCCATTCCTCAAATTAC+TGG - chr5_2:9264278-9264297 Msa0755480:intron 45.0%
GGGACTGATCCAGTAATTTG+AGG + chr5_2:9264290-9264309 None:intergenic 45.0%
GGGTGTTTGAGTATGTGAAG+AGG - chr5_2:9264493-9264512 Msa0755480:intron 45.0%
GTAACAACGAGGTGTGTAAC+AGG + chr5_2:9264707-9264726 None:intergenic 45.0%
GTAACAACGAGGTGTGTAAC+AGG + chr5_2:9264707-9264726 None:intergenic 45.0%
TTATAGATCCGACCTCACAG+GGG + chr5_2:9264887-9264906 None:intergenic 45.0%
GTTATAGATCCGACCTCACA+GGG + chr5_2:9264888-9264907 None:intergenic 45.0%
CCTTAACCAAGGTGTGTAAC+AGG + chr5_2:9265102-9265121 None:intergenic 45.0%
CCTGTTACACACCTTGGTTA+AGG - chr5_2:9265099-9265118 Msa0755480:intron 45.0%
TAAGGCTATCCACCTCTTTG+AGG - chr5_2:9265117-9265136 Msa0755480:intron 45.0%
TAGATCCAACCTCAAAGAGG+TGG + chr5_2:9265129-9265148 None:intergenic 45.0%
GGTTAGATCCAACCTCAAAG+AGG + chr5_2:9265132-9265151 None:intergenic 45.0%
AGGCGAGAGCTTTCAAAGTT+TGG - chr5_2:9265398-9265417 Msa0755480:CDS 45.0%
CTCTCCCTCAAATCCGGTTT+AGG - chr5_2:9262394-9262413 Msa0755480:CDS 50.0%
AGGAAGAAGAGGGGTAGAAG+AGG + chr5_2:9262485-9262504 None:intergenic 50.0%
!! CAACGTTGGTGTTGGTGTTG+GGG - chr5_2:9262717-9262736 Msa0755480:intron 50.0%
! GTTGGGGTGTGAGTTTTCCA+GGG - chr5_2:9262845-9262864 Msa0755480:intron 50.0%
!! AGGTGATTTGCAGGTGCTGA+AGG - chr5_2:9262969-9262988 Msa0755480:intron 50.0%
TCTAGAGAGGTTGTGGTGTG+GGG + chr5_2:9264015-9264034 None:intergenic 50.0%
!! GTTCTAGAGAGGTTGTGGTG+TGG + chr5_2:9264017-9264036 None:intergenic 50.0%
TGTGTAACAGGAAAGCCCGA+AGG + chr5_2:9264674-9264693 None:intergenic 50.0%
GGCTTTCCTGTTACACACCT+GGG - chr5_2:9264677-9264696 Msa0755480:CDS 50.0%
CTCGTTGTTACACACCTCGA+GGG - chr5_2:9264716-9264735 Msa0755480:CDS 50.0%
TTGTTACACACCTCGAGGGA+TGG - chr5_2:9264720-9264739 Msa0755480:CDS 50.0%
TGTTACACACCTCGAGGGAT+GGG - chr5_2:9264721-9264740 Msa0755480:CDS 50.0%
GTGTAACAGGAAAGCCCGAA+AGG + chr5_2:9264673-9264692 None:intergenic 50.0%
GGCTTTCCTGTTACACACCT+GGG - chr5_2:9264677-9264696 Msa0755480:CDS 50.0%
CTCGTTGTTACACACCTCGA+GGG - chr5_2:9264716-9264735 Msa0755480:CDS 50.0%
TTGTTACACACCTCGAGGGA+TGG - chr5_2:9264720-9264739 Msa0755480:CDS 50.0%
TGTTACACACCTCGAGGGAT+GGG - chr5_2:9264721-9264740 Msa0755480:CDS 50.0%
TGTGTAACAGGAAAGCCCGA+AGG + chr5_2:9264674-9264693 None:intergenic 50.0%
GGCTTTCCTGTTACACACCT+CGG - chr5_2:9264677-9264696 Msa0755480:CDS 50.0%
CCTTAACCGAGGTGTGTAAC+AGG + chr5_2:9264857-9264876 None:intergenic 50.0%
CCTGTTACACACCTCGGTTA+AGG - chr5_2:9264854-9264873 Msa0755480:intron 50.0%
GGTTATAGATCCGACCTCAC+AGG + chr5_2:9264889-9264908 None:intergenic 50.0%
TGTGTAACAGGAAAGCCCGA+AGG + chr5_2:9264674-9264693 None:intergenic 50.0%
GGCTTTCCTGTTACACACCT+TGG - chr5_2:9264677-9264696 Msa0755480:CDS 50.0%
! GAGGTGGATAGCCTTAACCA+AGG + chr5_2:9265113-9265132 None:intergenic 50.0%
!! GCTATCCACCTCTTTGAGGT+TGG - chr5_2:9265121-9265140 Msa0755480:CDS 50.0%
CAACCGGAAGAACACCCTTC+AGG + chr5_2:9262655-9262674 None:intergenic 55.0%
!! CTGAAGGGTGTTCTTCCGGT+TGG - chr5_2:9262653-9262672 Msa0755480:intron 55.0%
TATGGCTAGGACGGTGATGC+CGG - chr5_2:9262795-9262814 Msa0755480:intron 55.0%
! CGTTGGGGTGTGAGTTTTCC+AGG - chr5_2:9262844-9262863 Msa0755480:intron 55.0%
GGGCTTTCCTGTTACACACC+TGG - chr5_2:9264676-9264695 Msa0755480:CDS 55.0%
GGAAAGCCCAGGTGTGTAAC+AGG + chr5_2:9264686-9264705 None:intergenic 55.0%
GGTGTGTAACAGGAAAGCCC+AGG + chr5_2:9264676-9264695 None:intergenic 55.0%
CCTCGAGGTGTGTAACAACG+AGG + chr5_2:9264718-9264737 None:intergenic 55.0%
CCTCGTTGTTACACACCTCG+AGG - chr5_2:9264715-9264734 Msa0755480:CDS 55.0%
GTTACACACCTCGAGGGATG+GGG - chr5_2:9264722-9264741 Msa0755480:CDS 55.0%
TTACACACCTCGAGGGATGG+GGG - chr5_2:9264723-9264742 Msa0755480:CDS 55.0%
GGGGGATGGGAATAGCCTTT+CGG - chr5_2:9264741-9264760 Msa0755480:CDS 55.0%
GGGGATGGGAATAGCCTTTC+GGG - chr5_2:9264742-9264761 Msa0755480:CDS 55.0%
GGGCTTTCCTGTTACACACC+TGG - chr5_2:9264676-9264695 Msa0755480:CDS 55.0%
GGAAAGCCCAGGTGTGTAAC+AGG + chr5_2:9264686-9264705 None:intergenic 55.0%
GGTGTGTAACAGGAAAGCCC+AGG + chr5_2:9264676-9264695 None:intergenic 55.0%
CCTCGAGGTGTGTAACAACG+AGG + chr5_2:9264718-9264737 None:intergenic 55.0%
CCTCGTTGTTACACACCTCG+AGG - chr5_2:9264715-9264734 Msa0755480:CDS 55.0%
GTTACACACCTCGAGGGATG+GGG - chr5_2:9264722-9264741 Msa0755480:CDS 55.0%
TTACACACCTCGAGGGATGG+GGG - chr5_2:9264723-9264742 Msa0755480:CDS 55.0%
TGGGGGATGGGAATAGCCTT+CGG - chr5_2:9264740-9264759 Msa0755480:CDS 55.0%
TAAGGCTATCCACCCCTGTG+AGG - chr5_2:9264872-9264891 Msa0755480:CDS 55.0%
ACAGGGATGGGAACAGCCTT+CGG - chr5_2:9265071-9265090 Msa0755480:CDS 55.0%
ACGGTGATGCCGGTGACACA+AGG - chr5_2:9262805-9262824 Msa0755480:intron 60.0%
CGGTGATGCCGGTGACACAA+GGG - chr5_2:9262806-9262825 Msa0755480:intron 60.0%
TGGTTGGCATCTCCCCTGAC+AGG - chr5_2:9264616-9264635 Msa0755480:CDS 60.0%
GGTTGGCATCTCCCCTGACA+GGG - chr5_2:9264617-9264636 Msa0755480:CDS 60.0%
GCATCTCCCCTGACAGGGAT+GGG - chr5_2:9264622-9264641 Msa0755480:CDS 60.0%
CATCTCCCCTGACAGGGATG+GGG - chr5_2:9264623-9264642 Msa0755480:CDS 60.0%
ATCTCCCCTGACAGGGATGG+GGG - chr5_2:9264624-9264643 Msa0755480:CDS 60.0%
TGGGGGATGGGAACAGCCTT+CGG - chr5_2:9264641-9264660 Msa0755480:CDS 60.0%
AGCCTTCGGGGAACAGCCTT+CGG - chr5_2:9264655-9264674 Msa0755480:CDS 60.0%
GGGGGATGGGAATAGCCTTC+GGG - chr5_2:9264827-9264846 Msa0755480:intron 60.0%
! GGGGTGGATAGCCTTAACCG+AGG + chr5_2:9264868-9264887 None:intergenic 60.0%
GCTATCCACCCCTGTGAGGT+CGG - chr5_2:9264876-9264895 Msa0755480:CDS 60.0%
TAGATCCGACCTCACAGGGG+TGG + chr5_2:9264884-9264903 None:intergenic 60.0%
CAGGGATGGGAACAGCCTTC+GGG - chr5_2:9265072-9265091 Msa0755480:CDS 60.0%
GGCATCTCCCCTGACAGGGA+TGG - chr5_2:9264621-9264640 Msa0755480:CDS 65.0%
CCATCCCCCATCCCTGTCAG+GGG + chr5_2:9264631-9264650 None:intergenic 65.0%
CCCATCCCCCATCCCTGTCA+GGG + chr5_2:9264632-9264651 None:intergenic 65.0%
CCCTGACAGGGATGGGGGAT+GGG - chr5_2:9264629-9264648 Msa0755480:CDS 65.0%
TCCCATCCCCCATCCCTGTC+AGG + chr5_2:9264633-9264652 None:intergenic 65.0%
GGGGGATGGGAACAGCCTTC+GGG - chr5_2:9264642-9264661 Msa0755480:CDS 65.0%
GGGGATGGGAACAGCCTTCG+GGG - chr5_2:9264643-9264662 Msa0755480:CDS 65.0%
GCCTTCGGGGAACAGCCTTC+GGG - chr5_2:9264656-9264675 Msa0755480:CDS 65.0%
ACACCTCGAGGGATGGGGGA+TGG - chr5_2:9264727-9264746 Msa0755480:CDS 65.0%
CACCTCGAGGGATGGGGGAT+GGG - chr5_2:9264728-9264747 Msa0755480:CDS 65.0%
TTCCCATCCCCCATCCCTCG+AGG + chr5_2:9264733-9264752 None:intergenic 65.0%
ACACCTCGAGGGATGGGGGA+TGG - chr5_2:9264727-9264746 Msa0755480:CDS 65.0%
CACCTCGAGGGATGGGGGAT+GGG - chr5_2:9264728-9264747 Msa0755480:CDS 65.0%
TTCCCATCCCCCATCCCTCG+AGG + chr5_2:9264733-9264752 None:intergenic 65.0%
TGCTTGGCATCTCCCGCGAC+AGG - chr5_2:9265053-9265072 Msa0755480:CDS 65.0%
GCTTGGCATCTCCCGCGACA+GGG - chr5_2:9265054-9265073 Msa0755480:CDS 65.0%
GCATCTCCCGCGACAGGGAT+GGG - chr5_2:9265059-9265078 Msa0755480:CDS 65.0%
GCTGTTCCCATCCCTGTCGC+GGG + chr5_2:9265068-9265087 None:intergenic 65.0%
GGCTGTTCCCATCCCTGTCG+CGG + chr5_2:9265069-9265088 None:intergenic 65.0%
CCCCTGACAGGGATGGGGGA+TGG - chr5_2:9264628-9264647 Msa0755480:CDS 70.0%
GCCCGAAGGCTGTTCCCCGA+AGG + chr5_2:9264660-9264679 None:intergenic 70.0%
GGCATCTCCCGCGACAGGGA+TGG - chr5_2:9265058-9265077 Msa0755480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 9262205 9265551 9262205 ID=Msa0755480;Name=Msa0755480
chr5_2 mRNA 9262205 9265551 9262205 ID=Msa0755480-mRNA-1;Parent=Msa0755480;Name=Msa0755480-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|0|0|5|0|375
chr5_2 exon 9265347 9265551 9265347 ID=Msa0755480-mRNA-1:exon:4335;Parent=Msa0755480-mRNA-1
chr5_2 exon 9265119 9265340 9265119 ID=Msa0755480-mRNA-1:exon:4334;Parent=Msa0755480-mRNA-1
chr5_2 exon 9264859 9265097 9264859 ID=Msa0755480-mRNA-1:exon:4333;Parent=Msa0755480-mRNA-1
chr5_2 exon 9264547 9264774 9264547 ID=Msa0755480-mRNA-1:exon:4332;Parent=Msa0755480-mRNA-1
chr5_2 exon 9262205 9262438 9262205 ID=Msa0755480-mRNA-1:exon:4331;Parent=Msa0755480-mRNA-1
chr5_2 CDS 9265347 9265551 9265347 ID=Msa0755480-mRNA-1:cds;Parent=Msa0755480-mRNA-1
chr5_2 CDS 9265119 9265340 9265119 ID=Msa0755480-mRNA-1:cds;Parent=Msa0755480-mRNA-1
chr5_2 CDS 9264859 9265097 9264859 ID=Msa0755480-mRNA-1:cds;Parent=Msa0755480-mRNA-1
chr5_2 CDS 9264547 9264774 9264547 ID=Msa0755480-mRNA-1:cds;Parent=Msa0755480-mRNA-1
chr5_2 CDS 9262205 9262438 9262205 ID=Msa0755480-mRNA-1:cds;Parent=Msa0755480-mRNA-1
Gene Sequence

>Msa0755480

ATGATAGCAAAAGTACCAATAACAATATTCAACAACCCTTTACTTTCAACTATCACAGCCACAAATAACTACTCAACTTCTGATTTTTCATTCTCACTTTCAACAAATTTCCCAACTGGTCCAACCTTCAAACTCTCTTACTCTCCAACAACAACCACAACTTCTTCTTCTTCTTCTCTTCCTTTCTCTCTCTCCCTCAAATCCGGTCTTTTTGGTTCACCTCATCATTCTCCTCTTGTCTTCTCCGCTAATTTCTCTCTTTCTTCTCTTTCCTCTTCTACCCCTCTTCTTCCTTCTTTCTCTTTACACTTTAAACCCCAATTTGGTCATTTCTCTCTTCACAAAACCGTTCTCTCAGATTCTTACACCAACACCAAAACTGTTACTAATTCTAGCCCTCTTTCTGTTTCACCTCAAATTGAAAAGGGGTGTTCTTCCGGTTGGCAAAATTTGAACTTGGAACCATTTGGTCACAATAACAACAACAACGTTGGTGTTGGTGTTGGGGTTGACCCAGATGCTAAAAACAGTGAAAAATATGGTCTTTCACCTTGTGTTGGTGTTATGGCTAGGACGGTGATGCCGGTGACACAAGGGTTGTTGTTGAATTTTCGTTGGGGTGTGAGTTTTCCAGGGAAATCGGGGTTGAAAATGCCATATTTGGCAGTGCTGAAGGAGATGAAAATGGATTTGGAGAATGTTGAGAAGGAGAATAAGGAGATGAAGAGATTGTTGAATGAGATGAAAATGGGAGTTTCTAAAGGGAAGGTTTCAAAGCAGAAGCAGAAGCAGAAGCAGAAGCATTCAGGTGAGAGCTTTCAAAGTTTAGGAAGCAATAAAAATGGAAGAAAAGAGAATGAGAAAAAACAAGAAATCAAGTCTCAGAATGTTGTAGAGAATAAGGTTAGGAAGAGAGTGTTGGATGAAATGAAAATGGGAGTTTCTAAAGGGAACGTTTCAAAGCAGAAGCATTCAGGCGAGAGCTTTCAAAGTTTGGACAGCAATAGAAATGGAAGAAAAGAGAATGAGAAAAAACAAGAAATCAAGTCTCAGACTCAGAATATTGTAGTGAGTGATTTTGAATCTGAATTGGAAAAAGCTATAAAAGCTGCTTCTTCTTCTTCTTAG

Protein sequence

>Msa0755480

MIAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYSPTTTTTSSSSSLPFSLSLKSGLFGSPHHSPLVFSANFSLSSLSSSTPLLPSFSLHFKPQFGHFSLHKTVLSDSYTNTKTVTNSSPLSVSPQIEKGCSSGWQNLNLEPFGHNNNNNVGVGVGVDPDAKNSEKYGLSPCVGVMARTVMPVTQGLLLNFRWGVSFPGKSGLKMPYLAVLKEMKMDLENVEKENKEMKRLLNEMKMGVSKGKVSKQKQKQKQKHSGESFQSLGSNKNGRKENEKKQEIKSQNVVENKVRKRVLDEMKMGVSKGNVSKQKHSGESFQSLDSNRNGRKENEKKQEIKSQTQNIVVSDFESELEKAIKAASSSS*