AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381060 MtrunA17_Chr3g0144411 85.010 507 63 2 173 668 41 545 0.0 896
Msa1381060 MtrunA17_Chr3g0144411 76.981 265 50 1 1 254 28 292 9.50e-133 401
Msa1381060 MtrunA17_Chr3g0144411 60.123 163 52 2 14 163 131 293 1.24e-51 187
Msa1381060 MtrunA17_Chr3g0144391 75.356 491 119 2 179 668 23 512 0.0 766
Msa1381060 MtrunA17_Chr3g0144391 67.647 238 75 1 1 236 28 265 9.12e-106 330
Msa1381060 MtrunA17_Chr3g0144391 63.801 221 80 0 127 347 41 261 3.03e-88 285
Msa1381060 MtrunA17_Chr3g0144391 59.414 239 96 1 87 324 23 261 3.45e-86 279
Msa1381060 MtrunA17_Chr3g0144391 57.741 239 100 1 64 301 23 261 2.67e-82 269
Msa1381060 MtrunA17_Chr3g0144391 59.649 114 40 2 14 123 156 267 7.12e-32 130
Msa1381060 MtrunA17_Chr4g0034731 41.587 416 183 12 286 662 39 433 1.86e-94 298
Msa1381060 MtrunA17_Chr4g0034691 32.630 711 361 26 8 664 65 711 2.89e-93 304
Msa1381060 MtrunA17_Chr4g0034451 56.000 225 97 2 439 661 302 526 3.24e-92 296
Msa1381060 MtrunA17_Chr4g0034721 35.603 514 277 15 153 664 118 579 1.43e-91 295
Msa1381060 MtrunA17_Chr6g0485051 57.073 205 85 3 460 661 1 205 2.11e-70 227
Msa1381060 MtrunA17_Chr3g0144451 47.489 219 112 1 446 661 57 275 3.86e-69 227
Msa1381060 MtrunA17_Chr4g0034821 46.575 219 114 1 446 661 73 291 4.02e-66 219
Msa1381060 MtrunA17_Chr3g0138231 46.119 219 115 1 446 661 48 266 7.08e-66 218
Msa1381060 MtrunA17_Chr3g0144421 42.466 219 122 2 447 662 86 303 3.51e-60 204
Msa1381060 MtrunA17_Chr1g0147271 41.284 218 118 5 448 660 171 383 8.34e-46 167
Msa1381060 MtrunA17_Chr1g0147321 40.000 215 122 4 448 660 27 236 2.55e-45 162
Msa1381060 MtrunA17_Chr1g0147291 39.013 223 129 4 440 660 48 265 1.05e-44 160
Msa1381060 MtrunA17_Chr1g0147261 39.720 214 122 4 448 659 89 297 7.27e-44 159
Msa1381060 MtrunA17_Chr1g0147301 38.938 226 129 5 440 660 62 283 3.71e-43 157
Msa1381060 MtrunA17_Chr1g0147331 39.070 215 123 4 448 659 113 322 1.36e-42 156
Msa1381060 MtrunA17_Chr1g0146631 39.070 215 123 4 448 659 113 322 2.02e-42 156
Msa1381060 MtrunA17_Chr1g0147251 38.208 212 125 3 448 659 35 240 2.06e-41 150
Msa1381060 MtrunA17_Chr3g0139431 40.183 219 122 6 448 661 107 321 7.86e-41 151
Msa1381060 MtrunA17_Chr1g0147311 38.356 219 124 5 448 660 141 354 2.59e-40 151
Msa1381060 MtrunA17_Chr1g0147241 38.710 217 125 4 446 659 99 310 3.62e-38 144
Msa1381060 MtrunA17_Chr4g0034051 60.976 82 30 2 586 665 2 83 3.27e-27 105
Msa1381060 MtrunA17_Chr5g0413591 33.178 214 121 8 448 650 415 617 2.40e-25 111
Msa1381060 MtrunA17_Chr8g0365401 32.301 226 125 7 448 659 412 623 1.46e-24 108
Msa1381060 MtrunA17_Chr3g0117791 32.719 217 118 6 448 650 413 615 3.84e-24 107
Msa1381060 MtrunA17_Chr8g0365361 32.432 222 112 7 448 650 181 383 4.31e-24 105
Msa1381060 MtrunA17_Chr8g0365381 31.532 222 134 6 448 660 429 641 5.09e-24 107
Msa1381060 MtrunA17_Chr4g0034711 56.000 75 33 0 434 508 20 94 3.30e-22 92.0
Msa1381060 MtrunA17_Chr8g0355871 32.110 218 122 7 448 663 31 224 2.34e-21 93.6
Msa1381060 MtrunA17_Chr4g0076231 35.256 156 96 4 507 660 5 157 1.11e-20 89.4
Msa1381060 MtrunA17_Chr8g0355321 36.478 159 89 6 504 661 155 302 2.22e-19 89.4
Msa1381060 MtrunA17_Chr5g0412951 27.979 193 122 5 474 659 25 207 9.94e-19 85.5
Msa1381060 MtrunA17_Chr5g0412991 29.348 184 113 5 474 650 226 399 1.76e-18 88.6
Msa1381060 MtrunA17_Chr5g0412991 28.249 177 110 5 474 643 18 184 2.39e-15 79.0
Msa1381060 MtrunA17_Chr5g0412981 29.348 184 113 5 474 650 226 399 1.86e-18 88.2
Msa1381060 MtrunA17_Chr5g0412981 28.249 177 110 5 474 643 18 184 3.09e-15 78.6
Msa1381060 MtrunA17_Chr8g0355331 34.177 158 92 5 505 661 275 421 2.80e-18 88.2
Msa1381060 MtrunA17_Chr8g0355841 34.667 150 88 5 512 661 370 509 2.05e-17 85.9
Msa1381060 MtrunA17_Chr8g0355311 32.432 148 90 5 514 661 53 190 2.61e-17 80.9
Msa1381060 MtrunA17_Chr8g0355861 30.233 215 128 7 447 661 68 260 3.49e-17 82.4
Msa1381060 MtrunA17_Chr4g0034021 64.151 53 19 0 434 486 204 256 2.45e-15 76.6
Msa1381060 MtrunA17_Chr8g0355831 33.333 141 84 4 521 661 221 351 7.39e-15 76.6
Msa1381060 MtrunA17_Chr1g0168781 32.000 150 93 4 512 661 119 259 8.89e-14 72.0
Msa1381060 MtrunA17_Chr8g0371951 38.667 75 43 2 578 650 14 87 3.30e-11 60.1
Msa1381060 MtrunA17_Chr5g0413021 37.037 81 49 2 580 659 48 127 4.85e-11 60.8
Msa1381060 MtrunA17_Chr4g0034031 42.857 56 32 0 507 562 1 56 6.50e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381060 AT1G49320.1 33.942 274 165 6 399 660 9 278 2.42e-44 160
Msa1381060 AT5G25610.1 38.073 218 125 6 448 659 176 389 6.44e-39 148
Msa1381060 AT1G70370.2 32.727 220 134 6 448 660 411 623 2.37e-25 111
Msa1381060 AT1G70370.1 32.727 220 134 6 448 660 411 623 2.37e-25 111
Msa1381060 AT1G23760.1 33.166 199 113 5 471 660 432 619 3.52e-24 108
Msa1381060 AT1G60390.1 29.798 198 117 5 472 659 435 620 2.20e-21 99.4

Find 191 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATCAAGTTTATCTTGA+TGG 0.211968 tig0020421:+110629 Msa1381060:CDS
AGGATATCTATGCTCCTAAA+TGG 0.228868 tig0020421:+111554 Msa1381060:CDS
GAATTTGTTCATAGTGTTCT+TGG 0.231624 tig0020421:+111442 Msa1381060:CDS
TTTGCAGAACTACACCATTT+TGG 0.234201 tig0020421:+111522 Msa1381060:CDS
TCCCTGTAAAGCACGTTCTA+TGG 0.238519 tig0020421:+111794 Msa1381060:CDS
GTCTTTCATGTCTTCACCTT+GGG 0.240047 tig0020421:-111344 None:intergenic
TCCAATCAAGTTTATCTTGA+TGG 0.240985 tig0020421:+110836 Msa1381060:CDS
GATAAACTTGATTGAAGTTT+GGG 0.247881 tig0020421:-110622 None:intergenic
AGGTCTTCAAAGTTCTTCTA+AGG 0.253474 tig0020421:+111644 Msa1381060:CDS
ATCCTTTGAGATTTCCAAAA+TGG 0.256902 tig0020421:-111536 None:intergenic
GATAAACTTGATTGGAGTTT+GGG 0.256939 tig0020421:-110829 None:intergenic
TCTAATCAAGTTTATCTTGA+TGG 0.268313 tig0020421:+110905 Msa1381060:CDS
GATAAACTTGATTAGAGTTT+GGG 0.274295 tig0020421:-110898 None:intergenic
GATAAACTTGGTTGGAGTTT+GGG 0.274888 tig0020421:-110277 None:intergenic
GATAAACTTGGTTGGAGTTT+GGG 0.274888 tig0020421:-110760 None:intergenic
TCCAATCGAGTTTATCTTGA+TGG 0.276513 tig0020421:+110491 Msa1381060:CDS
GGGTGACAAGCTACCCATTT+AGG 0.279438 tig0020421:-111568 None:intergenic
TCCAACCAAGTTTATCTTGA+TGG 0.283723 tig0020421:+110767 Msa1381060:CDS
TCCAATCAAGTTTACCTTGA+TGG 0.284115 tig0020421:+110698 Msa1381060:CDS
TCCAATCAAGTTTACCTTGA+TGG 0.284115 tig0020421:+110974 Msa1381060:CDS
GCGAACTCCATGAAGAAAAT+TGG 0.289076 tig0020421:+111088 Msa1381060:CDS
GCCCATAGAACGTGCTTTAC+AGG 0.291191 tig0020421:-111796 None:intergenic
TACAATCAAGTTTACCTTGA+TGG 0.294768 tig0020421:+110353 Msa1381060:CDS
TCTAATCAAGTTTACCTTGA+TGG 0.295765 tig0020421:+110215 Msa1381060:CDS
AGATAAACTTGATTGAAGTT+TGG 0.296038 tig0020421:-110623 None:intergenic
TCCAATCAAGTTTACCTTGA+TGG 0.298027 tig0020421:+110560 Msa1381060:CDS
AGATAAACTTGGTTGGAGTT+TGG 0.299383 tig0020421:-110761 None:intergenic
CTCAATCAGGCTTACCTTGA+TGG 0.299708 tig0020421:+111043 Msa1381060:CDS
AGATAAACTTGATTGGAGTT+TGG 0.300825 tig0020421:-110830 None:intergenic
GTTGATCAGCCTTACCTTGA+TGG 0.301941 tig0020421:+109876 Msa1381060:CDS
AGATAAACTTGATTAGAGTT+TGG 0.304429 tig0020421:-110899 None:intergenic
AGATAAACTTGGTTGGAGTT+TGG 0.312080 tig0020421:-110278 None:intergenic
AGTTGTGTGAATGTTATATT+TGG 0.312223 tig0020421:-111473 None:intergenic
TTACCTAGATGGATGGTTAA+AGG 0.317562 tig0020421:+110088 Msa1381060:CDS
AGGTAAACTTGATTGGAGTT+AGG 0.321370 tig0020421:-110554 None:intergenic
AGGTAAACTTGATTGGAGTT+AGG 0.321370 tig0020421:-110968 None:intergenic
AGGTAAACTTGATTGTAGTT+AGG 0.321428 tig0020421:-110347 None:intergenic
AGGTAAACTTGATTAGAGTT+AGG 0.324677 tig0020421:-110209 None:intergenic
TGGAGACATAATGGATGCTT+TGG 0.329852 tig0020421:+111675 Msa1381060:CDS
AGGTAAACTTGATTGGAGTT+AGG 0.334772 tig0020421:-110140 None:intergenic
CTCAATCAGGCTTACCTTGA+TGG 0.351388 tig0020421:+110422 Msa1381060:CDS
TCTAATCCAAGTTATCTTGA+TGG 0.360948 tig0020421:+109939 Msa1381060:CDS
AGTTGAAATATAAAATGATT+AGG 0.362732 tig0020421:-111730 None:intergenic
GGTAAACTTGATTGTAGTTA+GGG 0.371166 tig0020421:-110346 None:intergenic
TCCAATCAAGTTTACCTAGA+TGG 0.372314 tig0020421:+110077 Msa1381060:CDS
TTGGTTCAGTTGGTGGCCTC+TGG 0.375839 tig0020421:-111829 None:intergenic
GTTCTTCTAAGGGGTCAATA+TGG 0.383693 tig0020421:+111655 Msa1381060:CDS
TCGATCTTGCTTTCTCAACT+TGG 0.386255 tig0020421:-110805 None:intergenic
ACCAATCAAGTTTACCTAGA+TGG 0.387215 tig0020421:+110008 Msa1381060:CDS
AGGTAAACTTGATTGGAGTT+AGG 0.390322 tig0020421:-110692 None:intergenic
TGGCAGTAGTAAAGAGCATA+AGG 0.391483 tig0020421:-111601 None:intergenic
CTAGTTCCCTTTGGTTCAGT+TGG 0.397858 tig0020421:-111839 None:intergenic
TTGATCTTGCCTTCTCAACT+TGG 0.398535 tig0020421:-110736 None:intergenic
ACTATGGATGATCTTTATGT+AGG 0.401691 tig0020421:+111187 Msa1381060:CDS
GGTAAACTTGATTGGAGTTA+GGG 0.403936 tig0020421:-110139 None:intergenic
GGTAAACTTGATTGGAGTTA+GGG 0.403936 tig0020421:-110553 None:intergenic
GGTAAACTTGATTGGAGTTA+GGG 0.403936 tig0020421:-110967 None:intergenic
TCGATCTTGCTTTCTCAACT+TGG 0.408406 tig0020421:-110874 None:intergenic
GAGAATAGTTGAAGAAGGCT+TGG 0.410178 tig0020421:-111304 None:intergenic
TCCAATCAAGTTTACCTTGA+CGG 0.412584 tig0020421:+110146 Msa1381060:CDS
GTTCCCTTTGGTTCAGTTGG+TGG 0.415275 tig0020421:-111836 None:intergenic
TGAGAGAGAATAGTTGAAGA+AGG 0.421944 tig0020421:-111309 None:intergenic
GGTAAACTTGATTAGAGTTA+GGG 0.423201 tig0020421:-110208 None:intergenic
AACCATCCATCAAGATAACT+TGG 0.424143 tig0020421:-109945 None:intergenic
CGTGCTTTACAGGGAAGAAA+TGG 0.426994 tig0020421:-111786 None:intergenic
CTAACTTGAATGCCTTTGTA+TGG 0.427506 tig0020421:-111156 None:intergenic
ATCAGCCTTACCTTGATGGC+TGG 0.428156 tig0020421:+109880 Msa1381060:CDS
TCCATCTAGGTAAACTTGAT+TGG 0.430236 tig0020421:-110078 None:intergenic
TTGGTGGCCTCTGGTGGGAG+TGG 0.432130 tig0020421:-111820 None:intergenic
CAACTACTTGGAATGAAGCC+TGG 0.433769 tig0020421:+111748 Msa1381060:CDS
TCCATCAAGGTAAACTTGAT+TGG 0.436782 tig0020421:-110699 None:intergenic
TCCATCAAGGTAAACTTGAT+TGG 0.436782 tig0020421:-110975 None:intergenic
GTTCAGTTGGTGGCCTCTGG+TGG 0.441778 tig0020421:-111826 None:intergenic
TATCTTTCAACCATCCATCT+AGG 0.444354 tig0020421:-110022 None:intergenic
TGTCTTTCATGTCTTCACCT+TGG 0.444739 tig0020421:-111345 None:intergenic
AACTTGATTGTAGTTAGGGT+TGG 0.447399 tig0020421:-110342 None:intergenic
GAAAGATACCAAGGATCAAA+TGG 0.449700 tig0020421:+111003 Msa1381060:CDS
GCCATCAAGGTAAACTTGAT+TGG 0.450457 tig0020421:-110561 None:intergenic
AACTATCCACAACCTCAATC+AGG 0.453031 tig0020421:+110409 Msa1381060:CDS
AAGTTAGCATATTCTCTGAT+AGG 0.453535 tig0020421:-111232 None:intergenic
GTGAATTTGAACCCACAAAA+GGG 0.456334 tig0020421:+111380 Msa1381060:CDS
GGTAAGCCTGATTGAGGTTG+TGG 0.457575 tig0020421:-110415 None:intergenic
CAAGACATGGCAGAATCAAA+AGG 0.457794 tig0020421:+111112 Msa1381060:CDS
ACCAATACACAACCTCAATC+AGG 0.459181 tig0020421:+111030 Msa1381060:CDS
TCCGTCAAGGTAAACTTGAT+TGG 0.460129 tig0020421:-110147 None:intergenic
TCCATCAAGATAAACTTGAT+TGG 0.461282 tig0020421:-110837 None:intergenic
GAAAGACACCAAAGATCAAA+AGG 0.461407 tig0020421:+110382 Msa1381060:CDS
ATCAAGTTTACCTTGATGGC+TGG 0.461599 tig0020421:+110357 Msa1381060:CDS
GGGTCAATATGGAGACATAA+TGG 0.464907 tig0020421:+111666 Msa1381060:CDS
TCCAACCAAGTTTATCTTGA+CGG 0.468204 tig0020421:+110284 Msa1381060:CDS
TGTGAATTTGAACCCACAAA+AGG 0.468537 tig0020421:+111379 Msa1381060:CDS
AGAGCATAAGGGTAAGGCCT+AGG 0.470306 tig0020421:-111589 None:intergenic
AACTACTTGGAATGAAGCCT+GGG 0.472218 tig0020421:+111749 Msa1381060:CDS
TCCATCTAGGTAAACTTGAT+TGG 0.472763 tig0020421:-110009 None:intergenic
ACTAGCTATCCCACAACATC+AGG 0.475940 tig0020421:+111493 Msa1381060:CDS
AACTTGATTGGAGTTAGGGG+TGG 0.478066 tig0020421:-110135 None:intergenic
AACTTGATTGGAGTTAGGGG+TGG 0.478066 tig0020421:-110549 None:intergenic
AACTTGATTGGAGTTAGGGG+TGG 0.478066 tig0020421:-110963 None:intergenic
CCCTGTAAAGCACGTTCTAT+GGG 0.478082 tig0020421:+111795 Msa1381060:CDS
CTATGGATGATCTTTATGTA+GGG 0.478680 tig0020421:+111188 Msa1381060:CDS
GGTAGTTGCGACTTGGAGAA+AGG 0.479066 tig0020421:-111283 None:intergenic
GCCTGATTGAGGTTGTGTAT+TGG 0.481303 tig0020421:-111031 None:intergenic
GGAGACATAATGGATGCTTT+GGG 0.482669 tig0020421:+111676 Msa1381060:CDS
CTACCTAGACATAGGGAGTA+AGG 0.491781 tig0020421:+111624 Msa1381060:CDS
ATCAGGCTTACCTTGATGGT+TGG 0.493059 tig0020421:+111047 Msa1381060:CDS
TAATGAAGTAGGACAAGCTT+TGG 0.493432 tig0020421:-111407 None:intergenic
TTCAGTTGGTGGCCTCTGGT+GGG 0.494537 tig0020421:-111825 None:intergenic
GATAAACTCGATTGGAGTTG+TGG 0.497172 tig0020421:-110484 None:intergenic
ATCAAGTTTACCTTGATGGC+TGG 0.497883 tig0020421:+110564 Msa1381060:CDS
TATCCTTTAACCATCCATCT+AGG 0.498476 tig0020421:-110091 None:intergenic
GAAAGATACCAAGAATCAAA+AGG 0.504634 tig0020421:+110037 Msa1381060:CDS
ATCAGGCTTACCTTGATGGC+TGG 0.504911 tig0020421:+110426 Msa1381060:CDS
GGATATCTATGCTCCTAAAT+GGG 0.506971 tig0020421:+111555 Msa1381060:CDS
ATCAAGTTTATCTTGATGGA+TGG 0.507762 tig0020421:+110909 Msa1381060:CDS
AAGGCTTGGTAGTTGCGACT+TGG 0.508594 tig0020421:-111290 None:intergenic
ATCAAGTTTATCTTGATGGA+TGG 0.510245 tig0020421:+110633 Msa1381060:CDS
ATCAAGTTTATCTTGATGGA+TGG 0.510245 tig0020421:+110840 Msa1381060:CDS
ATAAACTCGATTGGAGTTGT+GGG 0.512497 tig0020421:-110483 None:intergenic
CCAACCAAGTTTATCTTGAC+GGG 0.512790 tig0020421:+110285 Msa1381060:CDS
TGTCTTTCAACCAGCCATCA+AGG 0.516147 tig0020421:-110367 None:intergenic
CATCTTTCAGCCAGCCATCA+AGG 0.517526 tig0020421:-110574 None:intergenic
ACCATCCATCAAGATAAACT+TGG 0.519057 tig0020421:-110772 None:intergenic
TGGCTGGTTAAAAGATAGTC+GGG 0.523097 tig0020421:+110442 Msa1381060:CDS
ATCAAGTTTACCTTGATGGA+TGG 0.523440 tig0020421:+110219 Msa1381060:CDS
ATCGAGTTTATCTTGATGGA+TGG 0.523903 tig0020421:+110495 Msa1381060:CDS
TTAAGCCAGCCATCAAGGTA+AGG 0.525753 tig0020421:-109885 None:intergenic
ATCAAGTTTACCTTGATGGA+TGG 0.525923 tig0020421:+110702 Msa1381060:CDS
ACCAAGTTTATCTTGATGGA+TGG 0.525923 tig0020421:+110771 Msa1381060:CDS
ATCAAGTTTACCTTGATGGA+TGG 0.525923 tig0020421:+110978 Msa1381060:CDS
GATTCATGTCAGACGTGTCT+AGG 0.529464 tig0020421:-111708 None:intergenic
ATGGCTGGTTAAAAGATAGT+CGG 0.532803 tig0020421:+110441 Msa1381060:CDS
TCTTTCATGTCTTCACCTTG+GGG 0.533710 tig0020421:-111343 None:intergenic
ATAAACTTGGTTGGAGTTTG+GGG 0.533931 tig0020421:-110759 None:intergenic
TAGTAAAGAGCATAAGGGTA+AGG 0.534900 tig0020421:-111595 None:intergenic
AACTCGATTGGAGTTGTGGG+TGG 0.536216 tig0020421:-110480 None:intergenic
GGTCTTCAAAGTTCTTCTAA+GGG 0.536641 tig0020421:+111645 Msa1381060:CDS
AATGGGTAGCTTGTCACCCT+AGG 0.538892 tig0020421:+111572 Msa1381060:CDS
AACTTGATTGGAGTTAGGAG+TGG 0.538945 tig0020421:-110687 None:intergenic
CTTGATGGATGGTTGAAAGA+TGG 0.539962 tig0020421:+110782 Msa1381060:CDS
CTTGATGGATGGTTGAAAGA+TGG 0.539962 tig0020421:+110920 Msa1381060:CDS
ATAAACTTGGTTGGAGTTTG+GGG 0.540923 tig0020421:-110276 None:intergenic
GGTAAACTTGATTGGTGTTG+TGG 0.546018 tig0020421:-110001 None:intergenic
GAAAGATAGCCAAGTTGAGA+AGG 0.546728 tig0020421:+110727 Msa1381060:CDS
GGCAGTAGTAAAGAGCATAA+GGG 0.547129 tig0020421:-111600 None:intergenic
TCCATCAAGATAAACTCGAT+TGG 0.551426 tig0020421:-110492 None:intergenic
GAGCATAAGGGTAAGGCCTA+GGG 0.551678 tig0020421:-111588 None:intergenic
ATCCAAGTTATCTTGATGGA+TGG 0.552457 tig0020421:+109943 Msa1381060:CDS
GGTAAACTTGATTGGAGTCG+TGG 0.553661 tig0020421:-110070 None:intergenic
TATCTTTCAACCATCCATCA+AGG 0.553950 tig0020421:-110988 None:intergenic
CAAACGTGCACCTGATGTTG+TGG 0.555390 tig0020421:-111503 None:intergenic
CCCATAGAACGTGCTTTACA+GGG 0.559017 tig0020421:-111795 None:intergenic
ATCAAGTTTACCTTGACGGA+TGG 0.560773 tig0020421:+110150 Msa1381060:CDS
ATCAAGTTTACCTAGATGGA+TGG 0.561030 tig0020421:+110081 Msa1381060:CDS
ATCAAGTTTACCTAGATGGA+TGG 0.563100 tig0020421:+110012 Msa1381060:CDS
TACTGCCACTACCTAGACAT+AGG 0.566616 tig0020421:+111616 Msa1381060:CDS
AAGACATGGCAGAATCAAAA+GGG 0.567319 tig0020421:+111113 Msa1381060:CDS
ACCACCCGTCAAGATAAACT+TGG 0.569100 tig0020421:-110289 None:intergenic
TCCATCAAGATAAACTTGGT+TGG 0.570341 tig0020421:-110768 None:intergenic
TACTCCCTATGTCTAGGTAG+TGG 0.570771 tig0020421:-111621 None:intergenic
ACTGCCACTACCTAGACATA+GGG 0.575542 tig0020421:+111617 Msa1381060:CDS
GTAAACTTGATTGGAGTCGT+GGG 0.579561 tig0020421:-110069 None:intergenic
ACTCGATTGGAGTTGTGGGT+GGG 0.582962 tig0020421:-110479 None:intergenic
AGACCTTACTCCCTATGTCT+AGG 0.584376 tig0020421:-111627 None:intergenic
CATCAAGGTAAGCCTGATTG+AGG 0.584619 tig0020421:-110421 None:intergenic
CATCAAGGTAAGCCTGATTG+AGG 0.584619 tig0020421:-111042 None:intergenic
AGTCTTTCAACCAACCATCA+AGG 0.584877 tig0020421:-111057 None:intergenic
CTCACAAACGATTCTCCCCA+AGG 0.585857 tig0020421:+111328 Msa1381060:CDS
TATCTTTCAACCATCCATCA+AGG 0.588448 tig0020421:-110229 None:intergenic
TATCTTTCAACCATCCATCA+AGG 0.588448 tig0020421:-110712 None:intergenic
AGCATGGACTCTAATGAAGT+AGG 0.591847 tig0020421:-111418 None:intergenic
CCCGTCAAGATAAACTTGGT+TGG 0.599307 tig0020421:-110285 None:intergenic
AAACGTGCACCTGATGTTGT+GGG 0.607189 tig0020421:-111502 None:intergenic
ACTATGAACAAATTCAAGCA+TGG 0.607524 tig0020421:-111434 None:intergenic
AAAGATAGCCAAGTTGAGCA+AGG 0.607835 tig0020421:+110659 Msa1381060:CDS
GTCTTCAAAGTTCTTCTAAG+GGG 0.613953 tig0020421:+111646 Msa1381060:CDS
ATAAACTTGATTAGAGTTTG+GGG 0.616239 tig0020421:-110897 None:intergenic
ATAAACTTGATTGGAGTTTG+GGG 0.619713 tig0020421:-110828 None:intergenic
ACAGGGAAGAAATGGCACAT+AGG 0.619730 tig0020421:-111778 None:intergenic
TGGCACATAGGAGCTTCCCC+AGG 0.628176 tig0020421:-111766 None:intergenic
ATGGGCACCACTCCCACCAG+AGG 0.630918 tig0020421:+111813 Msa1381060:CDS
TTCAAAAGTTGACCATACAA+AGG 0.632099 tig0020421:+111144 Msa1381060:CDS
TGAATTTGAACCCACAAAAG+GGG 0.632371 tig0020421:+111381 Msa1381060:CDS
ATAAACTTGATTGAAGTTTG+GGG 0.634939 tig0020421:-110621 None:intergenic
ACCAAGTTTATCTTGACGGG+TGG 0.636426 tig0020421:+110288 Msa1381060:CDS
GAAGAAAATTGGACAAGACA+TGG 0.638239 tig0020421:+111099 Msa1381060:CDS
GTAAACTTGATTGGAGTTAG+GGG 0.649022 tig0020421:-110138 None:intergenic
GTAAACTTGATTGGAGTTAG+GGG 0.649022 tig0020421:-110552 None:intergenic
GTAAACTTGATTGGAGTTAG+GGG 0.649022 tig0020421:-110966 None:intergenic
TCATGTCAGACGTGTCTAGG+TGG 0.678767 tig0020421:-111705 None:intergenic
TGGATGGTTGAAAGATACCA+AGG 0.679634 tig0020421:+110994 Msa1381060:CDS
ACTACTTGGAATGAAGCCTG+GGG 0.737264 tig0020421:+111750 Msa1381060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTGAAATATAAAATGATT+AGG - tig0020421:111733-111752 None:intergenic 15.0%
!! AGTTGAAATATAAAATGATT+AGG - tig0020421:111733-111752 None:intergenic 15.0%
!!! CATTTTATATTTCAACTACT+TGG + tig0020421:111736-111755 Msa1381060:CDS 20.0%
!!! CATTTTATATTTCAACTACT+TGG + tig0020421:111736-111755 Msa1381060:CDS 20.0%
!!! TTTAGTTTTTTGTTCTTCAG+TGG - tig0020421:109918-109937 None:intergenic 25.0%
!!! ATAGCTTTTTTGTTTTCTTC+GGG - tig0020421:109981-110000 None:intergenic 25.0%
!!! GATAGCTTTTTTGTTTTCTT+CGG - tig0020421:109982-110001 None:intergenic 25.0%
!!! GGATTTTGTTTTTTGAACTT+GGG - tig0020421:110117-110136 None:intergenic 25.0%
!!! TGGATTTTGTTTTTTGAACT+TGG - tig0020421:110118-110137 None:intergenic 25.0%
!!! AGTTTTTTCCTTTTGATCTT+TGG - tig0020421:110393-110412 None:intergenic 25.0%
! ATAAACTTGATTGAAGTTTG+GGG - tig0020421:110624-110643 None:intergenic 25.0%
! GATAAACTTGATTGAAGTTT+GGG - tig0020421:110625-110644 None:intergenic 25.0%
! AGATAAACTTGATTGAAGTT+TGG - tig0020421:110626-110645 None:intergenic 25.0%
! TTCAATCAAGTTTATCTTGA+TGG + tig0020421:110629-110648 Msa1381060:CDS 25.0%
! ATAAACTTGATTAGAGTTTG+GGG - tig0020421:110900-110919 None:intergenic 25.0%
! GATAAACTTGATTAGAGTTT+GGG - tig0020421:110901-110920 None:intergenic 25.0%
! AGATAAACTTGATTAGAGTT+TGG - tig0020421:110902-110921 None:intergenic 25.0%
! TCTAATCAAGTTTATCTTGA+TGG + tig0020421:110905-110924 Msa1381060:CDS 25.0%
! AGTTGTGTGAATGTTATATT+TGG - tig0020421:111476-111495 None:intergenic 25.0%
!!! TTTAGTTTTTTGTTCTTCAG+TGG - tig0020421:109918-109937 None:intergenic 25.0%
!!! ATAGCTTTTTTGTTTTCTTC+GGG - tig0020421:109981-110000 None:intergenic 25.0%
!!! GATAGCTTTTTTGTTTTCTT+CGG - tig0020421:109982-110001 None:intergenic 25.0%
!!! GGATTTTGTTTTTTGAACTT+GGG - tig0020421:110117-110136 None:intergenic 25.0%
!!! TGGATTTTGTTTTTTGAACT+TGG - tig0020421:110118-110137 None:intergenic 25.0%
!!! AGTTTTTTCCTTTTGATCTT+TGG - tig0020421:110393-110412 None:intergenic 25.0%
! ATAAACTTGATTGAAGTTTG+GGG - tig0020421:110624-110643 None:intergenic 25.0%
! GATAAACTTGATTGAAGTTT+GGG - tig0020421:110625-110644 None:intergenic 25.0%
! AGATAAACTTGATTGAAGTT+TGG - tig0020421:110626-110645 None:intergenic 25.0%
! TTCAATCAAGTTTATCTTGA+TGG + tig0020421:110629-110648 Msa1381060:CDS 25.0%
! ATAAACTTGATTAGAGTTTG+GGG - tig0020421:110900-110919 None:intergenic 25.0%
! GATAAACTTGATTAGAGTTT+GGG - tig0020421:110901-110920 None:intergenic 25.0%
! AGATAAACTTGATTAGAGTT+TGG - tig0020421:110902-110921 None:intergenic 25.0%
! TCTAATCAAGTTTATCTTGA+TGG + tig0020421:110905-110924 Msa1381060:CDS 25.0%
! AGTTGTGTGAATGTTATATT+TGG - tig0020421:111476-111495 None:intergenic 25.0%
TCTAATCCAAGTTATCTTGA+TGG + tig0020421:109939-109958 Msa1381060:CDS 30.0%
GAAAGATACCAAGAATCAAA+AGG + tig0020421:110037-110056 Msa1381060:CDS 30.0%
!! AGTCTTTTCCTTTTGATTCT+TGG - tig0020421:110048-110067 None:intergenic 30.0%
! GAATTTTGCTTTCTCAACTT+GGG - tig0020421:110186-110205 None:intergenic 30.0%
! TGAATTTTGCTTTCTCAACT+TGG - tig0020421:110187-110206 None:intergenic 30.0%
GGTAAACTTGATTAGAGTTA+GGG - tig0020421:110211-110230 None:intergenic 30.0%
AGGTAAACTTGATTAGAGTT+AGG - tig0020421:110212-110231 None:intergenic 30.0%
TCTAATCAAGTTTACCTTGA+TGG + tig0020421:110215-110234 Msa1381060:CDS 30.0%
GGTAAACTTGATTGTAGTTA+GGG - tig0020421:110349-110368 None:intergenic 30.0%
AGGTAAACTTGATTGTAGTT+AGG - tig0020421:110350-110369 None:intergenic 30.0%
TACAATCAAGTTTACCTTGA+TGG + tig0020421:110353-110372 Msa1381060:CDS 30.0%
! TGGATTTTTCTTTCTCAACA+TGG - tig0020421:110532-110551 None:intergenic 30.0%
! TGATTTTGCTTTCTCAAGTT+GGG - tig0020421:110600-110619 None:intergenic 30.0%
! TTGATTTTGCTTTCTCAAGT+TGG - tig0020421:110601-110620 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG + tig0020421:110633-110652 Msa1381060:CDS 30.0%
ATAAACTTGATTGGAGTTTG+GGG - tig0020421:110831-110850 None:intergenic 30.0%
GATAAACTTGATTGGAGTTT+GGG - tig0020421:110832-110851 None:intergenic 30.0%
AGATAAACTTGATTGGAGTT+TGG - tig0020421:110833-110852 None:intergenic 30.0%
TCCAATCAAGTTTATCTTGA+TGG + tig0020421:110836-110855 Msa1381060:CDS 30.0%
TCCATCAAGATAAACTTGAT+TGG - tig0020421:110633-110652 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG + tig0020421:110633-110652 Msa1381060:CDS 30.0%
ATCAAGTTTATCTTGATGGA+TGG + tig0020421:110633-110652 Msa1381060:CDS 30.0%
TTCAAAAGTTGACCATACAA+AGG + tig0020421:111144-111163 Msa1381060:CDS 30.0%
!!! CAAGTTAGCTTTTTTCACTA+TGG + tig0020421:111171-111190 Msa1381060:CDS 30.0%
ACTATGGATGATCTTTATGT+AGG + tig0020421:111187-111206 Msa1381060:CDS 30.0%
CTATGGATGATCTTTATGTA+GGG + tig0020421:111188-111207 Msa1381060:CDS 30.0%
AAGTTAGCATATTCTCTGAT+AGG - tig0020421:111235-111254 None:intergenic 30.0%
!!! ATGTAGTCAGCTACTTTTTT+TGG - tig0020421:111262-111281 None:intergenic 30.0%
ACTATGAACAAATTCAAGCA+TGG - tig0020421:111437-111456 None:intergenic 30.0%
! GAATTTGTTCATAGTGTTCT+TGG + tig0020421:111442-111461 Msa1381060:CDS 30.0%
!! ATCCTTTGAGATTTCCAAAA+TGG - tig0020421:111539-111558 None:intergenic 30.0%
TCTAATCCAAGTTATCTTGA+TGG + tig0020421:109939-109958 Msa1381060:CDS 30.0%
GAAAGATACCAAGAATCAAA+AGG + tig0020421:110037-110056 Msa1381060:CDS 30.0%
!! AGTCTTTTCCTTTTGATTCT+TGG - tig0020421:110048-110067 None:intergenic 30.0%
! GAATTTTGCTTTCTCAACTT+GGG - tig0020421:110186-110205 None:intergenic 30.0%
! TGAATTTTGCTTTCTCAACT+TGG - tig0020421:110187-110206 None:intergenic 30.0%
GGTAAACTTGATTAGAGTTA+GGG - tig0020421:110211-110230 None:intergenic 30.0%
AGGTAAACTTGATTAGAGTT+AGG - tig0020421:110212-110231 None:intergenic 30.0%
TCTAATCAAGTTTACCTTGA+TGG + tig0020421:110215-110234 Msa1381060:CDS 30.0%
GGTAAACTTGATTGTAGTTA+GGG - tig0020421:110349-110368 None:intergenic 30.0%
AGGTAAACTTGATTGTAGTT+AGG - tig0020421:110350-110369 None:intergenic 30.0%
TACAATCAAGTTTACCTTGA+TGG + tig0020421:110353-110372 Msa1381060:CDS 30.0%
! TGGATTTTTCTTTCTCAACA+TGG - tig0020421:110532-110551 None:intergenic 30.0%
! TGATTTTGCTTTCTCAAGTT+GGG - tig0020421:110600-110619 None:intergenic 30.0%
! TTGATTTTGCTTTCTCAAGT+TGG - tig0020421:110601-110620 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG + tig0020421:110633-110652 Msa1381060:CDS 30.0%
ATAAACTTGATTGGAGTTTG+GGG - tig0020421:110831-110850 None:intergenic 30.0%
GATAAACTTGATTGGAGTTT+GGG - tig0020421:110832-110851 None:intergenic 30.0%
AGATAAACTTGATTGGAGTT+TGG - tig0020421:110833-110852 None:intergenic 30.0%
TCCAATCAAGTTTATCTTGA+TGG + tig0020421:110836-110855 Msa1381060:CDS 30.0%
TCCATCAAGATAAACTTGAT+TGG - tig0020421:110633-110652 None:intergenic 30.0%
ATCAAGTTTATCTTGATGGA+TGG + tig0020421:110633-110652 Msa1381060:CDS 30.0%
ATCAAGTTTATCTTGATGGA+TGG + tig0020421:110633-110652 Msa1381060:CDS 30.0%
TTCAAAAGTTGACCATACAA+AGG + tig0020421:111144-111163 Msa1381060:CDS 30.0%
!!! CAAGTTAGCTTTTTTCACTA+TGG + tig0020421:111171-111190 Msa1381060:CDS 30.0%
ACTATGGATGATCTTTATGT+AGG + tig0020421:111187-111206 Msa1381060:CDS 30.0%
CTATGGATGATCTTTATGTA+GGG + tig0020421:111188-111207 Msa1381060:CDS 30.0%
AAGTTAGCATATTCTCTGAT+AGG - tig0020421:111235-111254 None:intergenic 30.0%
!!! ATGTAGTCAGCTACTTTTTT+TGG - tig0020421:111262-111281 None:intergenic 30.0%
ACTATGAACAAATTCAAGCA+TGG - tig0020421:111437-111456 None:intergenic 30.0%
! GAATTTGTTCATAGTGTTCT+TGG + tig0020421:111442-111461 Msa1381060:CDS 30.0%
!! ATCCTTTGAGATTTCCAAAA+TGG - tig0020421:111539-111558 None:intergenic 30.0%
ATCCAAGTTATCTTGATGGA+TGG + tig0020421:109943-109962 Msa1381060:CDS 35.0%
AACCATCCATCAAGATAACT+TGG - tig0020421:109948-109967 None:intergenic 35.0%
ACCAATCAAGTTTACCTAGA+TGG + tig0020421:110008-110027 Msa1381060:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG - tig0020421:110012-110031 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG + tig0020421:110012-110031 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCT+AGG - tig0020421:110025-110044 None:intergenic 35.0%
TCCAATCAAGTTTACCTAGA+TGG + tig0020421:110077-110096 Msa1381060:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG - tig0020421:110012-110031 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG + tig0020421:110012-110031 Msa1381060:CDS 35.0%
TTACCTAGATGGATGGTTAA+AGG + tig0020421:110088-110107 Msa1381060:CDS 35.0%
TATCCTTTAACCATCCATCT+AGG - tig0020421:110094-110113 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG - tig0020421:110141-110160 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG - tig0020421:110142-110161 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+CGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
ATCAAGTTTACCTTGATGGA+TGG + tig0020421:110219-110238 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG - tig0020421:110232-110251 None:intergenic 35.0%
! TCGATTTTGCTTTCTCATCT+TGG - tig0020421:110256-110275 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG - tig0020421:110279-110298 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG - tig0020421:110280-110299 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG - tig0020421:110281-110300 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+CGG + tig0020421:110284-110303 Msa1381060:CDS 35.0%
! TGGATTTTTCTTTCTCAGCA+TGG - tig0020421:110325-110344 None:intergenic 35.0%
AACTTGATTGTAGTTAGGGT+TGG - tig0020421:110345-110364 None:intergenic 35.0%
GAAAGACACCAAAGATCAAA+AGG + tig0020421:110382-110401 Msa1381060:CDS 35.0%
! TATCTTTTAACCAGCCATCA+AGG - tig0020421:110439-110458 None:intergenic 35.0%
! ATGGCTGGTTAAAAGATAGT+CGG + tig0020421:110441-110460 Msa1381060:CDS 35.0%
ATAAACTCGATTGGAGTTGT+GGG - tig0020421:110486-110505 None:intergenic 35.0%
TCCAATCGAGTTTATCTTGA+TGG + tig0020421:110491-110510 Msa1381060:CDS 35.0%
TCCATCAAGATAAACTCGAT+TGG - tig0020421:110495-110514 None:intergenic 35.0%
ATCGAGTTTATCTTGATGGA+TGG + tig0020421:110495-110514 Msa1381060:CDS 35.0%
GTAAACTTGATTGGAGTTAG+GGG - tig0020421:110141-110160 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG - tig0020421:110142-110161 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG - tig0020421:110219-110238 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG + tig0020421:110219-110238 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG - tig0020421:110232-110251 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG - tig0020421:110279-110298 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG - tig0020421:110280-110299 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG - tig0020421:110281-110300 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+TGG + tig0020421:110284-110303 Msa1381060:CDS 35.0%
TCCATCAAGATAAACTTGGT+TGG - tig0020421:110771-110790 None:intergenic 35.0%
ACCAAGTTTATCTTGATGGA+TGG + tig0020421:110771-110790 Msa1381060:CDS 35.0%
ACCATCCATCAAGATAAACT+TGG - tig0020421:110499-110518 None:intergenic 35.0%
! TGGATTTTACTTGCTCAACT+TGG - tig0020421:110946-110965 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG - tig0020421:110141-110160 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG - tig0020421:110142-110161 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG - tig0020421:110219-110238 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG + tig0020421:110219-110238 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG - tig0020421:110232-110251 None:intergenic 35.0%
GAAAGATACCAAGGATCAAA+TGG + tig0020421:111003-111022 Msa1381060:CDS 35.0%
! TGGTTTTTCCATTTGATCCT+TGG - tig0020421:111014-111033 None:intergenic 35.0%
! GTCTTGTCCAATTTTCTTCA+TGG - tig0020421:111098-111117 None:intergenic 35.0%
GAAGAAAATTGGACAAGACA+TGG + tig0020421:111099-111118 Msa1381060:CDS 35.0%
AAGACATGGCAGAATCAAAA+GGG + tig0020421:111113-111132 Msa1381060:CDS 35.0%
!! GTATGGTCAACTTTTGAAGA+TGG - tig0020421:111142-111161 None:intergenic 35.0%
CTAACTTGAATGCCTTTGTA+TGG - tig0020421:111159-111178 None:intergenic 35.0%
TGAGAGAGAATAGTTGAAGA+AGG - tig0020421:111312-111331 None:intergenic 35.0%
TGTGAATTTGAACCCACAAA+AGG + tig0020421:111379-111398 Msa1381060:CDS 35.0%
GTGAATTTGAACCCACAAAA+GGG + tig0020421:111380-111399 Msa1381060:CDS 35.0%
TGAATTTGAACCCACAAAAG+GGG + tig0020421:111381-111400 Msa1381060:CDS 35.0%
TAATGAAGTAGGACAAGCTT+TGG - tig0020421:111410-111429 None:intergenic 35.0%
! TTTGCAGAACTACACCATTT+TGG + tig0020421:111522-111541 Msa1381060:CDS 35.0%
!! CACCATTTTGGAAATCTCAA+AGG + tig0020421:111534-111553 Msa1381060:CDS 35.0%
AGGATATCTATGCTCCTAAA+TGG + tig0020421:111554-111573 Msa1381060:CDS 35.0%
GGATATCTATGCTCCTAAAT+GGG + tig0020421:111555-111574 Msa1381060:CDS 35.0%
! TAGTAAAGAGCATAAGGGTA+AGG - tig0020421:111598-111617 None:intergenic 35.0%
AGGTCTTCAAAGTTCTTCTA+AGG + tig0020421:111644-111663 Msa1381060:CDS 35.0%
GGTCTTCAAAGTTCTTCTAA+GGG + tig0020421:111645-111664 Msa1381060:CDS 35.0%
GTCTTCAAAGTTCTTCTAAG+GGG + tig0020421:111646-111665 Msa1381060:CDS 35.0%
ATCCAAGTTATCTTGATGGA+TGG + tig0020421:109943-109962 Msa1381060:CDS 35.0%
AACCATCCATCAAGATAACT+TGG - tig0020421:109948-109967 None:intergenic 35.0%
ACCAATCAAGTTTACCTAGA+TGG + tig0020421:110008-110027 Msa1381060:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG - tig0020421:110012-110031 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG + tig0020421:110012-110031 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCT+AGG - tig0020421:110025-110044 None:intergenic 35.0%
TCCAATCAAGTTTACCTAGA+TGG + tig0020421:110077-110096 Msa1381060:CDS 35.0%
TCCATCTAGGTAAACTTGAT+TGG - tig0020421:110012-110031 None:intergenic 35.0%
ATCAAGTTTACCTAGATGGA+TGG + tig0020421:110012-110031 Msa1381060:CDS 35.0%
TTACCTAGATGGATGGTTAA+AGG + tig0020421:110088-110107 Msa1381060:CDS 35.0%
TATCCTTTAACCATCCATCT+AGG - tig0020421:110094-110113 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG - tig0020421:110141-110160 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG - tig0020421:110142-110161 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+CGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
ATCAAGTTTACCTTGATGGA+TGG + tig0020421:110219-110238 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG - tig0020421:110232-110251 None:intergenic 35.0%
! TCGATTTTGCTTTCTCATCT+TGG - tig0020421:110256-110275 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG - tig0020421:110279-110298 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG - tig0020421:110280-110299 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG - tig0020421:110281-110300 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+CGG + tig0020421:110284-110303 Msa1381060:CDS 35.0%
! TGGATTTTTCTTTCTCAGCA+TGG - tig0020421:110325-110344 None:intergenic 35.0%
AACTTGATTGTAGTTAGGGT+TGG - tig0020421:110345-110364 None:intergenic 35.0%
GAAAGACACCAAAGATCAAA+AGG + tig0020421:110382-110401 Msa1381060:CDS 35.0%
! TATCTTTTAACCAGCCATCA+AGG - tig0020421:110439-110458 None:intergenic 35.0%
! ATGGCTGGTTAAAAGATAGT+CGG + tig0020421:110441-110460 Msa1381060:CDS 35.0%
ATAAACTCGATTGGAGTTGT+GGG - tig0020421:110486-110505 None:intergenic 35.0%
TCCAATCGAGTTTATCTTGA+TGG + tig0020421:110491-110510 Msa1381060:CDS 35.0%
TCCATCAAGATAAACTCGAT+TGG - tig0020421:110495-110514 None:intergenic 35.0%
ATCGAGTTTATCTTGATGGA+TGG + tig0020421:110495-110514 Msa1381060:CDS 35.0%
GTAAACTTGATTGGAGTTAG+GGG - tig0020421:110141-110160 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG - tig0020421:110142-110161 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG - tig0020421:110219-110238 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG + tig0020421:110219-110238 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG - tig0020421:110232-110251 None:intergenic 35.0%
ATAAACTTGGTTGGAGTTTG+GGG - tig0020421:110279-110298 None:intergenic 35.0%
GATAAACTTGGTTGGAGTTT+GGG - tig0020421:110280-110299 None:intergenic 35.0%
AGATAAACTTGGTTGGAGTT+TGG - tig0020421:110281-110300 None:intergenic 35.0%
TCCAACCAAGTTTATCTTGA+TGG + tig0020421:110284-110303 Msa1381060:CDS 35.0%
TCCATCAAGATAAACTTGGT+TGG - tig0020421:110771-110790 None:intergenic 35.0%
ACCAAGTTTATCTTGATGGA+TGG + tig0020421:110771-110790 Msa1381060:CDS 35.0%
ACCATCCATCAAGATAAACT+TGG - tig0020421:110499-110518 None:intergenic 35.0%
! TGGATTTTACTTGCTCAACT+TGG - tig0020421:110946-110965 None:intergenic 35.0%
GTAAACTTGATTGGAGTTAG+GGG - tig0020421:110141-110160 None:intergenic 35.0%
GGTAAACTTGATTGGAGTTA+GGG - tig0020421:110142-110161 None:intergenic 35.0%
AGGTAAACTTGATTGGAGTT+AGG - tig0020421:110143-110162 None:intergenic 35.0%
TCCAATCAAGTTTACCTTGA+TGG + tig0020421:110146-110165 Msa1381060:CDS 35.0%
TCCATCAAGGTAAACTTGAT+TGG - tig0020421:110219-110238 None:intergenic 35.0%
ATCAAGTTTACCTTGATGGA+TGG + tig0020421:110219-110238 Msa1381060:CDS 35.0%
TATCTTTCAACCATCCATCA+AGG - tig0020421:110232-110251 None:intergenic 35.0%
GAAAGATACCAAGGATCAAA+TGG + tig0020421:111003-111022 Msa1381060:CDS 35.0%
! TGGTTTTTCCATTTGATCCT+TGG - tig0020421:111014-111033 None:intergenic 35.0%
! GTCTTGTCCAATTTTCTTCA+TGG - tig0020421:111098-111117 None:intergenic 35.0%
GAAGAAAATTGGACAAGACA+TGG + tig0020421:111099-111118 Msa1381060:CDS 35.0%
AAGACATGGCAGAATCAAAA+GGG + tig0020421:111113-111132 Msa1381060:CDS 35.0%
!! GTATGGTCAACTTTTGAAGA+TGG - tig0020421:111142-111161 None:intergenic 35.0%
CTAACTTGAATGCCTTTGTA+TGG - tig0020421:111159-111178 None:intergenic 35.0%
TGAGAGAGAATAGTTGAAGA+AGG - tig0020421:111312-111331 None:intergenic 35.0%
TGTGAATTTGAACCCACAAA+AGG + tig0020421:111379-111398 Msa1381060:CDS 35.0%
GTGAATTTGAACCCACAAAA+GGG + tig0020421:111380-111399 Msa1381060:CDS 35.0%
TGAATTTGAACCCACAAAAG+GGG + tig0020421:111381-111400 Msa1381060:CDS 35.0%
TAATGAAGTAGGACAAGCTT+TGG - tig0020421:111410-111429 None:intergenic 35.0%
! TTTGCAGAACTACACCATTT+TGG + tig0020421:111522-111541 Msa1381060:CDS 35.0%
!! CACCATTTTGGAAATCTCAA+AGG + tig0020421:111534-111553 Msa1381060:CDS 35.0%
AGGATATCTATGCTCCTAAA+TGG + tig0020421:111554-111573 Msa1381060:CDS 35.0%
GGATATCTATGCTCCTAAAT+GGG + tig0020421:111555-111574 Msa1381060:CDS 35.0%
! TAGTAAAGAGCATAAGGGTA+AGG - tig0020421:111598-111617 None:intergenic 35.0%
AGGTCTTCAAAGTTCTTCTA+AGG + tig0020421:111644-111663 Msa1381060:CDS 35.0%
GGTCTTCAAAGTTCTTCTAA+GGG + tig0020421:111645-111664 Msa1381060:CDS 35.0%
GTCTTCAAAGTTCTTCTAAG+GGG + tig0020421:111646-111665 Msa1381060:CDS 35.0%
!! TGTTTTTAAGCCAGCCATCA+AGG - tig0020421:109893-109912 None:intergenic 40.0%
!! GGTAAACTTGATTGGTGTTG+TGG - tig0020421:110004-110023 None:intergenic 40.0%
GTAAACTTGATTGGAGTCGT+GGG - tig0020421:110072-110091 None:intergenic 40.0%
TCCGTCAAGGTAAACTTGAT+TGG - tig0020421:110150-110169 None:intergenic 40.0%
ATCAAGTTTACCTTGACGGA+TGG + tig0020421:110150-110169 Msa1381060:CDS 40.0%
! TATCTTTTAGCCATCCGTCA+AGG - tig0020421:110163-110182 None:intergenic 40.0%
CCAACCAAGTTTATCTTGAC+GGG + tig0020421:110285-110304 Msa1381060:CDS 40.0%
! ATCAAGTTTACCTTGATGGC+TGG + tig0020421:110357-110376 Msa1381060:CDS 40.0%
AACTATCCACAACCTCAATC+AGG + tig0020421:110409-110428 Msa1381060:CDS 40.0%
! TGGCTGGTTAAAAGATAGTC+GGG + tig0020421:110442-110461 Msa1381060:CDS 40.0%
GATAAACTCGATTGGAGTTG+TGG - tig0020421:110487-110506 None:intergenic 40.0%
GCCATCAAGGTAAACTTGAT+TGG - tig0020421:110357-110376 None:intergenic 40.0%
! ATCAAGTTTACCTTGATGGC+TGG + tig0020421:110357-110376 Msa1381060:CDS 40.0%
! AAAGATAGCCAAGTTGAGCA+AGG + tig0020421:110659-110678 Msa1381060:CDS 40.0%
! TGGATTTTCCTTGCTCAACT+TGG - tig0020421:110670-110689 None:intergenic 40.0%
AACTTGATTGGAGTTAGGAG+TGG - tig0020421:110690-110709 None:intergenic 40.0%
! GAAAGATAGCCAAGTTGAGA+AGG + tig0020421:110727-110746 Msa1381060:CDS 40.0%
TTGATCTTGCCTTCTCAACT+TGG - tig0020421:110739-110758 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG + tig0020421:109954-109973 Msa1381060:CDS 40.0%
TCGATCTTGCTTTCTCAACT+TGG - tig0020421:110808-110827 None:intergenic 40.0%
TCGATCTTGCTTTCTCAACT+TGG - tig0020421:110808-110827 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG + tig0020421:109954-109973 Msa1381060:CDS 40.0%
TGGATGGTTGAAAGATACCA+AGG + tig0020421:110028-110047 Msa1381060:CDS 40.0%
ACCAATACACAACCTCAATC+AGG + tig0020421:111030-111049 Msa1381060:CDS 40.0%
AGTCTTTCAACCAACCATCA+AGG - tig0020421:111060-111079 None:intergenic 40.0%
GCGAACTCCATGAAGAAAAT+TGG + tig0020421:111088-111107 Msa1381060:CDS 40.0%
CAAGACATGGCAGAATCAAA+AGG + tig0020421:111112-111131 Msa1381060:CDS 40.0%
GAGAATAGTTGAAGAAGGCT+TGG - tig0020421:111307-111326 None:intergenic 40.0%
TCTTTCATGTCTTCACCTTG+GGG - tig0020421:111346-111365 None:intergenic 40.0%
GTCTTTCATGTCTTCACCTT+GGG - tig0020421:111347-111366 None:intergenic 40.0%
TGTCTTTCATGTCTTCACCT+TGG - tig0020421:111348-111367 None:intergenic 40.0%
AGCATGGACTCTAATGAAGT+AGG - tig0020421:111421-111440 None:intergenic 40.0%
! GGCAGTAGTAAAGAGCATAA+GGG - tig0020421:111603-111622 None:intergenic 40.0%
! TGGCAGTAGTAAAGAGCATA+AGG - tig0020421:111604-111623 None:intergenic 40.0%
! GTTCTTCTAAGGGGTCAATA+TGG + tig0020421:111655-111674 Msa1381060:CDS 40.0%
GGGTCAATATGGAGACATAA+TGG + tig0020421:111666-111685 Msa1381060:CDS 40.0%
!! TGGAGACATAATGGATGCTT+TGG + tig0020421:111675-111694 Msa1381060:CDS 40.0%
!! GGAGACATAATGGATGCTTT+GGG + tig0020421:111676-111695 Msa1381060:CDS 40.0%
AACTACTTGGAATGAAGCCT+GGG + tig0020421:111749-111768 Msa1381060:CDS 40.0%
!! TGTTTTTAAGCCAGCCATCA+AGG - tig0020421:109893-109912 None:intergenic 40.0%
!! GGTAAACTTGATTGGTGTTG+TGG - tig0020421:110004-110023 None:intergenic 40.0%
GTAAACTTGATTGGAGTCGT+GGG - tig0020421:110072-110091 None:intergenic 40.0%
TCCGTCAAGGTAAACTTGAT+TGG - tig0020421:110150-110169 None:intergenic 40.0%
ATCAAGTTTACCTTGACGGA+TGG + tig0020421:110150-110169 Msa1381060:CDS 40.0%
! TATCTTTTAGCCATCCGTCA+AGG - tig0020421:110163-110182 None:intergenic 40.0%
CCAACCAAGTTTATCTTGAC+GGG + tig0020421:110285-110304 Msa1381060:CDS 40.0%
! ATCAAGTTTACCTTGATGGC+TGG + tig0020421:110357-110376 Msa1381060:CDS 40.0%
AACTATCCACAACCTCAATC+AGG + tig0020421:110409-110428 Msa1381060:CDS 40.0%
! TGGCTGGTTAAAAGATAGTC+GGG + tig0020421:110442-110461 Msa1381060:CDS 40.0%
GATAAACTCGATTGGAGTTG+TGG - tig0020421:110487-110506 None:intergenic 40.0%
GCCATCAAGGTAAACTTGAT+TGG - tig0020421:110357-110376 None:intergenic 40.0%
! ATCAAGTTTACCTTGATGGC+TGG + tig0020421:110357-110376 Msa1381060:CDS 40.0%
! AAAGATAGCCAAGTTGAGCA+AGG + tig0020421:110659-110678 Msa1381060:CDS 40.0%
! TGGATTTTCCTTGCTCAACT+TGG - tig0020421:110670-110689 None:intergenic 40.0%
AACTTGATTGGAGTTAGGAG+TGG - tig0020421:110690-110709 None:intergenic 40.0%
! GAAAGATAGCCAAGTTGAGA+AGG + tig0020421:110727-110746 Msa1381060:CDS 40.0%
TTGATCTTGCCTTCTCAACT+TGG - tig0020421:110739-110758 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG + tig0020421:109954-109973 Msa1381060:CDS 40.0%
TCGATCTTGCTTTCTCAACT+TGG - tig0020421:110808-110827 None:intergenic 40.0%
TCGATCTTGCTTTCTCAACT+TGG - tig0020421:110808-110827 None:intergenic 40.0%
! CTTGATGGATGGTTGAAAGA+TGG + tig0020421:109954-109973 Msa1381060:CDS 40.0%
TGGATGGTTGAAAGATACCA+AGG + tig0020421:110028-110047 Msa1381060:CDS 40.0%
ACCAATACACAACCTCAATC+AGG + tig0020421:111030-111049 Msa1381060:CDS 40.0%
AGTCTTTCAACCAACCATCA+AGG - tig0020421:111060-111079 None:intergenic 40.0%
GCGAACTCCATGAAGAAAAT+TGG + tig0020421:111088-111107 Msa1381060:CDS 40.0%
CAAGACATGGCAGAATCAAA+AGG + tig0020421:111112-111131 Msa1381060:CDS 40.0%
GAGAATAGTTGAAGAAGGCT+TGG - tig0020421:111307-111326 None:intergenic 40.0%
TCTTTCATGTCTTCACCTTG+GGG - tig0020421:111346-111365 None:intergenic 40.0%
GTCTTTCATGTCTTCACCTT+GGG - tig0020421:111347-111366 None:intergenic 40.0%
TGTCTTTCATGTCTTCACCT+TGG - tig0020421:111348-111367 None:intergenic 40.0%
AGCATGGACTCTAATGAAGT+AGG - tig0020421:111421-111440 None:intergenic 40.0%
! GGCAGTAGTAAAGAGCATAA+GGG - tig0020421:111603-111622 None:intergenic 40.0%
! TGGCAGTAGTAAAGAGCATA+AGG - tig0020421:111604-111623 None:intergenic 40.0%
! GTTCTTCTAAGGGGTCAATA+TGG + tig0020421:111655-111674 Msa1381060:CDS 40.0%
GGGTCAATATGGAGACATAA+TGG + tig0020421:111666-111685 Msa1381060:CDS 40.0%
!! TGGAGACATAATGGATGCTT+TGG + tig0020421:111675-111694 Msa1381060:CDS 40.0%
!! GGAGACATAATGGATGCTTT+GGG + tig0020421:111676-111695 Msa1381060:CDS 40.0%
AACTACTTGGAATGAAGCCT+GGG + tig0020421:111749-111768 Msa1381060:CDS 40.0%
GTTGATCAGCCTTACCTTGA+TGG + tig0020421:109876-109895 Msa1381060:CDS 45.0%
TTAAGCCAGCCATCAAGGTA+AGG - tig0020421:109888-109907 None:intergenic 45.0%
GGTAAACTTGATTGGAGTCG+TGG - tig0020421:110073-110092 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG - tig0020421:110138-110157 None:intergenic 45.0%
CCCGTCAAGATAAACTTGGT+TGG - tig0020421:110288-110307 None:intergenic 45.0%
ACCAAGTTTATCTTGACGGG+TGG + tig0020421:110288-110307 Msa1381060:CDS 45.0%
ACCACCCGTCAAGATAAACT+TGG - tig0020421:110292-110311 None:intergenic 45.0%
TGTCTTTCAACCAGCCATCA+AGG - tig0020421:110370-110389 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG - tig0020421:110424-110443 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG + tig0020421:110422-110441 Msa1381060:CDS 45.0%
AACTTGATTGGAGTTAGGGG+TGG - tig0020421:110138-110157 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG - tig0020421:110138-110157 None:intergenic 45.0%
GCCTGATTGAGGTTGTGTAT+TGG - tig0020421:111034-111053 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG - tig0020421:110424-110443 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG + tig0020421:110422-110441 Msa1381060:CDS 45.0%
! ATCAGGCTTACCTTGATGGT+TGG + tig0020421:111047-111066 Msa1381060:CDS 45.0%
ACTAGCTATCCCACAACATC+AGG + tig0020421:111493-111512 Msa1381060:CDS 45.0%
AAACGTGCACCTGATGTTGT+GGG - tig0020421:111505-111524 None:intergenic 45.0%
TACTGCCACTACCTAGACAT+AGG + tig0020421:111616-111635 Msa1381060:CDS 45.0%
ACTGCCACTACCTAGACATA+GGG + tig0020421:111617-111636 Msa1381060:CDS 45.0%
TACTCCCTATGTCTAGGTAG+TGG - tig0020421:111624-111643 None:intergenic 45.0%
CTACCTAGACATAGGGAGTA+AGG + tig0020421:111624-111643 Msa1381060:CDS 45.0%
AGACCTTACTCCCTATGTCT+AGG - tig0020421:111630-111649 None:intergenic 45.0%
GATTCATGTCAGACGTGTCT+AGG - tig0020421:111711-111730 None:intergenic 45.0%
CAACTACTTGGAATGAAGCC+TGG + tig0020421:111748-111767 Msa1381060:CDS 45.0%
ACTACTTGGAATGAAGCCTG+GGG + tig0020421:111750-111769 Msa1381060:CDS 45.0%
ACAGGGAAGAAATGGCACAT+AGG - tig0020421:111781-111800 None:intergenic 45.0%
CGTGCTTTACAGGGAAGAAA+TGG - tig0020421:111789-111808 None:intergenic 45.0%
TCCCTGTAAAGCACGTTCTA+TGG + tig0020421:111794-111813 Msa1381060:CDS 45.0%
CCCATAGAACGTGCTTTACA+GGG - tig0020421:111798-111817 None:intergenic 45.0%
CCCTGTAAAGCACGTTCTAT+GGG + tig0020421:111795-111814 Msa1381060:CDS 45.0%
GTTGATCAGCCTTACCTTGA+TGG + tig0020421:109876-109895 Msa1381060:CDS 45.0%
TTAAGCCAGCCATCAAGGTA+AGG - tig0020421:109888-109907 None:intergenic 45.0%
GGTAAACTTGATTGGAGTCG+TGG - tig0020421:110073-110092 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG - tig0020421:110138-110157 None:intergenic 45.0%
CCCGTCAAGATAAACTTGGT+TGG - tig0020421:110288-110307 None:intergenic 45.0%
ACCAAGTTTATCTTGACGGG+TGG + tig0020421:110288-110307 Msa1381060:CDS 45.0%
ACCACCCGTCAAGATAAACT+TGG - tig0020421:110292-110311 None:intergenic 45.0%
TGTCTTTCAACCAGCCATCA+AGG - tig0020421:110370-110389 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG - tig0020421:110424-110443 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG + tig0020421:110422-110441 Msa1381060:CDS 45.0%
AACTTGATTGGAGTTAGGGG+TGG - tig0020421:110138-110157 None:intergenic 45.0%
AACTTGATTGGAGTTAGGGG+TGG - tig0020421:110138-110157 None:intergenic 45.0%
GCCTGATTGAGGTTGTGTAT+TGG - tig0020421:111034-111053 None:intergenic 45.0%
CATCAAGGTAAGCCTGATTG+AGG - tig0020421:110424-110443 None:intergenic 45.0%
CTCAATCAGGCTTACCTTGA+TGG + tig0020421:110422-110441 Msa1381060:CDS 45.0%
! ATCAGGCTTACCTTGATGGT+TGG + tig0020421:111047-111066 Msa1381060:CDS 45.0%
ACTAGCTATCCCACAACATC+AGG + tig0020421:111493-111512 Msa1381060:CDS 45.0%
AAACGTGCACCTGATGTTGT+GGG - tig0020421:111505-111524 None:intergenic 45.0%
TACTGCCACTACCTAGACAT+AGG + tig0020421:111616-111635 Msa1381060:CDS 45.0%
ACTGCCACTACCTAGACATA+GGG + tig0020421:111617-111636 Msa1381060:CDS 45.0%
TACTCCCTATGTCTAGGTAG+TGG - tig0020421:111624-111643 None:intergenic 45.0%
CTACCTAGACATAGGGAGTA+AGG + tig0020421:111624-111643 Msa1381060:CDS 45.0%
AGACCTTACTCCCTATGTCT+AGG - tig0020421:111630-111649 None:intergenic 45.0%
GATTCATGTCAGACGTGTCT+AGG - tig0020421:111711-111730 None:intergenic 45.0%
CAACTACTTGGAATGAAGCC+TGG + tig0020421:111748-111767 Msa1381060:CDS 45.0%
ACTACTTGGAATGAAGCCTG+GGG + tig0020421:111750-111769 Msa1381060:CDS 45.0%
ACAGGGAAGAAATGGCACAT+AGG - tig0020421:111781-111800 None:intergenic 45.0%
CGTGCTTTACAGGGAAGAAA+TGG - tig0020421:111789-111808 None:intergenic 45.0%
TCCCTGTAAAGCACGTTCTA+TGG + tig0020421:111794-111813 Msa1381060:CDS 45.0%
CCCATAGAACGTGCTTTACA+GGG - tig0020421:111798-111817 None:intergenic 45.0%
CCCTGTAAAGCACGTTCTAT+GGG + tig0020421:111795-111814 Msa1381060:CDS 45.0%
! ATCAGCCTTACCTTGATGGC+TGG + tig0020421:109880-109899 Msa1381060:CDS 50.0%
GGTAAGCCTGATTGAGGTTG+TGG - tig0020421:110418-110437 None:intergenic 50.0%
! ATCAGGCTTACCTTGATGGC+TGG + tig0020421:110426-110445 Msa1381060:CDS 50.0%
ACTCGATTGGAGTTGTGGGT+GGG - tig0020421:110482-110501 None:intergenic 50.0%
AACTCGATTGGAGTTGTGGG+TGG - tig0020421:110483-110502 None:intergenic 50.0%
CATCTTTCAGCCAGCCATCA+AGG - tig0020421:110577-110596 None:intergenic 50.0%
! GGTAGTTGCGACTTGGAGAA+AGG - tig0020421:111286-111305 None:intergenic 50.0%
! AAGGCTTGGTAGTTGCGACT+TGG - tig0020421:111293-111312 None:intergenic 50.0%
CTCACAAACGATTCTCCCCA+AGG + tig0020421:111328-111347 Msa1381060:CDS 50.0%
! GCTTTGGTCTCCCCTTTTGT+GGG - tig0020421:111394-111413 None:intergenic 50.0%
!! AGCTTTGGTCTCCCCTTTTG+TGG - tig0020421:111395-111414 None:intergenic 50.0%
CAAACGTGCACCTGATGTTG+TGG - tig0020421:111506-111525 None:intergenic 50.0%
GGGTGACAAGCTACCCATTT+AGG - tig0020421:111571-111590 None:intergenic 50.0%
! AATGGGTAGCTTGTCACCCT+AGG + tig0020421:111572-111591 Msa1381060:CDS 50.0%
GAGCATAAGGGTAAGGCCTA+GGG - tig0020421:111591-111610 None:intergenic 50.0%
AGAGCATAAGGGTAAGGCCT+AGG - tig0020421:111592-111611 None:intergenic 50.0%
TCATGTCAGACGTGTCTAGG+TGG - tig0020421:111708-111727 None:intergenic 50.0%
GCCCATAGAACGTGCTTTAC+AGG - tig0020421:111799-111818 None:intergenic 50.0%
! ATCAGCCTTACCTTGATGGC+TGG + tig0020421:109880-109899 Msa1381060:CDS 50.0%
GGTAAGCCTGATTGAGGTTG+TGG - tig0020421:110418-110437 None:intergenic 50.0%
! ATCAGGCTTACCTTGATGGC+TGG + tig0020421:110426-110445 Msa1381060:CDS 50.0%
ACTCGATTGGAGTTGTGGGT+GGG - tig0020421:110482-110501 None:intergenic 50.0%
AACTCGATTGGAGTTGTGGG+TGG - tig0020421:110483-110502 None:intergenic 50.0%
CATCTTTCAGCCAGCCATCA+AGG - tig0020421:110577-110596 None:intergenic 50.0%
! GGTAGTTGCGACTTGGAGAA+AGG - tig0020421:111286-111305 None:intergenic 50.0%
! AAGGCTTGGTAGTTGCGACT+TGG - tig0020421:111293-111312 None:intergenic 50.0%
CTCACAAACGATTCTCCCCA+AGG + tig0020421:111328-111347 Msa1381060:CDS 50.0%
! GCTTTGGTCTCCCCTTTTGT+GGG - tig0020421:111394-111413 None:intergenic 50.0%
!! AGCTTTGGTCTCCCCTTTTG+TGG - tig0020421:111395-111414 None:intergenic 50.0%
CAAACGTGCACCTGATGTTG+TGG - tig0020421:111506-111525 None:intergenic 50.0%
GGGTGACAAGCTACCCATTT+AGG - tig0020421:111571-111590 None:intergenic 50.0%
! AATGGGTAGCTTGTCACCCT+AGG + tig0020421:111572-111591 Msa1381060:CDS 50.0%
GAGCATAAGGGTAAGGCCTA+GGG - tig0020421:111591-111610 None:intergenic 50.0%
AGAGCATAAGGGTAAGGCCT+AGG - tig0020421:111592-111611 None:intergenic 50.0%
TCATGTCAGACGTGTCTAGG+TGG - tig0020421:111708-111727 None:intergenic 50.0%
GCCCATAGAACGTGCTTTAC+AGG - tig0020421:111799-111818 None:intergenic 50.0%
TGGCACATAGGAGCTTCCCC+AGG - tig0020421:111769-111788 None:intergenic 60.0%
TGGCACATAGGAGCTTCCCC+AGG - tig0020421:111769-111788 None:intergenic 60.0%
ATGGGCACCACTCCCACCAG+AGG + tig0020421:111813-111832 Msa1381060:CDS 65.0%
! TTGGTGGCCTCTGGTGGGAG+TGG - tig0020421:111823-111842 None:intergenic 65.0%
ATGGGCACCACTCCCACCAG+AGG + tig0020421:111813-111832 Msa1381060:CDS 65.0%
! TTGGTGGCCTCTGGTGGGAG+TGG - tig0020421:111823-111842 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0020421 gene 109840 111846 109840 ID=Msa1381060;Name=Msa1381060
tig0020421 mRNA 109840 111846 109840 ID=Msa1381060-mRNA-1;Parent=Msa1381060;Name=Msa1381060-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|668
tig0020421 exon 109840 111846 109840 ID=Msa1381060-mRNA-1:exon:7345;Parent=Msa1381060-mRNA-1
tig0020421 CDS 109840 111846 109840 ID=Msa1381060-mRNA-1:cds;Parent=Msa1381060-mRNA-1
Gene Sequence

>Msa1381060

ATGAAGCTTCAGCACGAGAATGTAGAAGAAAAACAAGTTGATCAGCCTTACCTTGATGGCTGGCTTAAAAACAGTCCACTGAAGAACAAAAAACTAAACTCTAATCCAAGTTATCTTGATGGATGGTTGAAAGATGCTCCCGAAGAAAACAAAAAAGCTATCCACAACACCAATCAAGTTTACCTAGATGGATGGTTGAAAGATACCAAGAATCAAAAGGAAAAGACTACCCACGACTCCAATCAAGTTTACCTAGATGGATGGTTAAAGGATACCCAAGTTCAAAAAACAAAATCCACCCCTAACTCCAATCAAGTTTACCTTGACGGATGGCTAAAAGATACCCAAGTTGAGAAAGCAAAATTCATCCCTAACTCTAATCAAGTTTACCTTGATGGATGGTTGAAAGATAGCCAAGATGAGAAAGCAAAATCGACCCCAAACTCCAACCAAGTTTATCTTGACGGGTGGTTGAAAGATAGCCATGCTGAGAAAGAAAAATCCAACCCTAACTACAATCAAGTTTACCTTGATGGCTGGTTGAAAGACACCAAAGATCAAAAGGAAAAAACTATCCACAACCTCAATCAGGCTTACCTTGATGGCTGGTTAAAAGATAGTCGGGTTGAGAGAGCAAAACCCACCCACAACTCCAATCGAGTTTATCTTGATGGATGGTTGAAAGATAGCCATGTTGAGAAAGAAAAATCCACCCCTAACTCCAATCAAGTTTACCTTGATGGCTGGCTGAAAGATGCCCAACTTGAGAAAGCAAAATCAACCCCAAACTTCAATCAAGTTTATCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGCAAGGAAAATCCACTCCTAACTCCAATCAAGTTTACCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGAAGGCAAGATCAACCCCAAACTCCAACCAAGTTTATCTTGATGGATGGTTGAAAGATGGCCAAGTTGAGAAAGCAAGATCGACCCCAAACTCCAATCAAGTTTATCTTGATGGATGGTTGAAAGATAGCCAAGTTGAGAAAGCAAGATCGACCCCAAACTCTAATCAAGTTTATCTTGATGGATGGTTGAAAGATGGCCAAGTTGAGCAAGTAAAATCCACCCCTAACTCCAATCAAGTTTACCTTGATGGATGGTTGAAAGATACCAAGGATCAAATGGAAAAACCAATACACAACCTCAATCAGGCTTACCTTGATGGTTGGTTGAAAGACTCGCATGCAGCGAACTCCATGAAGAAAATTGGACAAGACATGGCAGAATCAAAAGGGAAACCATCTTCAAAAGTTGACCATACAAAGGCATTCAAGTTAGCTTTTTTCACTATGGATGATCTTTATGTAGGGAACGTAATGACACTGCAATTTCCTATCAGAGAATATGCTAACTTCTTGCCAAAAAAAGTAGCTGACTACATTCCTTTCTCCAAGTCGCAACTACCAAGCCTTCTTCAACTATTCTCTCTCACAAACGATTCTCCCCAAGGTGAAGACATGAAAGACATAATTGATCAATGTGAATTTGAACCCACAAAAGGGGAGACCAAAGCTTGTCCTACTTCATTAGAGTCCATGCTTGAATTTGTTCATAGTGTTCTTGGTACTGAGACCAAATATAACATTCACACAACTAGCTATCCCACAACATCAGGTGCACGTTTGCAGAACTACACCATTTTGGAAATCTCAAAGGATATCTATGCTCCTAAATGGGTAGCTTGTCACCCTAGGCCTTACCCTTATGCTCTTTACTACTGCCACTACCTAGACATAGGGAGTAAGGTCTTCAAAGTTCTTCTAAGGGGTCAATATGGAGACATAATGGATGCTTTGGGCATTTGCCACCTAGACACGTCTGACATGAATCCTAATCATTTTATATTTCAACTACTTGGAATGAAGCCTGGGGAAGCTCCTATGTGCCATTTCTTCCCTGTAAAGCACGTTCTATGGGCACCACTCCCACCAGAGGCCACCAACTGA
Protein sequence

>Msa1381060

MKLQHENVEEKQVDQPYLDGWLKNSPLKNKKLNSNPSYLDGWLKDAPEENKKAIHNTNQVYLDGWLKDTKNQKEKTTHDSNQVYLDGWLKDTQVQKTKSTPNSNQVYLDGWLKDTQVEKAKFIPNSNQVYLDGWLKDSQDEKAKSTPNSNQVYLDGWLKDSHAEKEKSNPNYNQVYLDGWLKDTKDQKEKTIHNLNQAYLDGWLKDSRVERAKPTHNSNRVYLDGWLKDSHVEKEKSTPNSNQVYLDGWLKDAQLEKAKSTPNFNQVYLDGWLKDSQVEQGKSTPNSNQVYLDGWLKDSQVEKARSTPNSNQVYLDGWLKDGQVEKARSTPNSNQVYLDGWLKDSQVEKARSTPNSNQVYLDGWLKDGQVEQVKSTPNSNQVYLDGWLKDTKDQMEKPIHNLNQAYLDGWLKDSHAANSMKKIGQDMAESKGKPSSKVDHTKAFKLAFFTMDDLYVGNVMTLQFPIREYANFLPKKVADYIPFSKSQLPSLLQLFSLTNDSPQGEDMKDIIDQCEFEPTKGETKACPTSLESMLEFVHSVLGTETKYNIHTTSYPTTSGARLQNYTILEISKDIYAPKWVACHPRPYPYALYYCHYLDIGSKVFKVLLRGQYGDIMDALGICHLDTSDMNPNHFIFQLLGMKPGEAPMCHFFPVKHVLWAPLPPEATN*