Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973540 | XP_003618439.2 | 94.129 | 511 | 30 | 0 | 1 | 511 | 1 | 511 | 0.0 | 929 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973540 | sp|Q9FLD5|ASD_ARATH | 61.522 | 460 | 167 | 5 | 3 | 455 | 4 | 460 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973540 | G7KK18 | 94.129 | 511 | 30 | 0 | 1 | 511 | 1 | 511 | 0.0 | 929 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0419910 | Msa0973540 | 0.835019 | 2.140442e-56 | -8.615850e-47 |
| Msa0490380 | Msa0973540 | 0.830940 | 2.212216e-55 | -8.615850e-47 |
| Msa0870840 | Msa0973540 | 0.916377 | 1.917375e-85 | -8.615850e-47 |
| Msa0904010 | Msa0973540 | 0.836957 | 6.900952e-57 | -8.615850e-47 |
| Msa0936530 | Msa0973540 | 0.823845 | 1.112394e-53 | -8.615850e-47 |
| Msa0936540 | Msa0973540 | 0.842435 | 2.590757e-58 | -8.615850e-47 |
| Msa0936550 | Msa0973540 | 0.843778 | 1.136550e-58 | -8.615850e-47 |
| Msa0936560 | Msa0973540 | 0.906280 | 1.756427e-80 | -8.615850e-47 |
| Msa0973520 | Msa0973540 | 0.831583 | 1.537850e-55 | -8.615850e-47 |
| Msa0973530 | Msa0973540 | 0.860394 | 2.129205e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973540 | MtrunA17_Chr6g0452391 | 94.129 | 511 | 30 | 0 | 1 | 511 | 1 | 511 | 0.0 | 929 |
| Msa0973540 | MtrunA17_Chr6g0452371 | 86.301 | 511 | 70 | 0 | 1 | 511 | 3 | 513 | 0.0 | 846 |
| Msa0973540 | MtrunA17_Chr6g0452451 | 74.802 | 504 | 107 | 4 | 1 | 491 | 3 | 499 | 0.0 | 724 |
| Msa0973540 | MtrunA17_Chr6g0452401 | 74.120 | 483 | 104 | 3 | 23 | 490 | 1 | 477 | 0.0 | 698 |
| Msa0973540 | MtrunA17_Chr6g0466811 | 66.931 | 505 | 139 | 5 | 10 | 513 | 21 | 498 | 0.0 | 653 |
| Msa0973540 | MtrunA17_Chr7g0215951 | 67.387 | 463 | 142 | 4 | 3 | 459 | 1 | 460 | 0.0 | 651 |
| Msa0973540 | MtrunA17_Chr4g0059811 | 57.115 | 506 | 199 | 8 | 3 | 493 | 6 | 508 | 0.0 | 595 |
| Msa0973540 | MtrunA17_Chr1g0155131 | 57.500 | 480 | 187 | 5 | 1 | 477 | 1 | 466 | 0.0 | 575 |
| Msa0973540 | MtrunA17_Chr6g0452411 | 74.194 | 403 | 85 | 4 | 103 | 492 | 1 | 397 | 0.0 | 574 |
| Msa0973540 | MtrunA17_Chr2g0292561 | 56.809 | 470 | 186 | 5 | 4 | 469 | 7 | 463 | 0.0 | 557 |
| Msa0973540 | MtrunA17_Chr1g0155121 | 54.526 | 464 | 195 | 5 | 5 | 458 | 3 | 460 | 0.0 | 521 |
| Msa0973540 | MtrunA17_Chr6g0452361 | 80.066 | 301 | 34 | 2 | 213 | 513 | 1 | 275 | 7.04e-153 | 437 |
| Msa0973540 | MtrunA17_Chr6g0452481 | 72.013 | 318 | 71 | 4 | 192 | 508 | 2 | 302 | 1.59e-147 | 425 |
| Msa0973540 | MtrunA17_Chr4g0072491 | 43.400 | 447 | 237 | 6 | 3 | 439 | 1 | 441 | 1.68e-123 | 371 |
| Msa0973540 | MtrunA17_Chr5g0404651 | 38.028 | 497 | 266 | 8 | 4 | 488 | 11 | 477 | 3.24e-116 | 352 |
| Msa0973540 | MtrunA17_Chr2g0315921 | 40.821 | 463 | 238 | 11 | 12 | 468 | 14 | 446 | 7.41e-112 | 339 |
| Msa0973540 | MtrunA17_Chr8g0372701 | 39.457 | 479 | 253 | 8 | 6 | 477 | 23 | 471 | 5.00e-109 | 333 |
| Msa0973540 | MtrunA17_Chr2g0315991 | 39.293 | 509 | 246 | 15 | 10 | 510 | 13 | 466 | 1.45e-107 | 328 |
| Msa0973540 | MtrunA17_Chr2g0315911 | 40.812 | 468 | 234 | 13 | 12 | 472 | 16 | 447 | 2.30e-107 | 328 |
| Msa0973540 | MtrunA17_Chr2g0315971 | 40.725 | 469 | 236 | 9 | 10 | 472 | 7 | 439 | 4.98e-107 | 335 |
| Msa0973540 | MtrunA17_Chr2g0315971 | 48.239 | 284 | 115 | 5 | 178 | 459 | 450 | 703 | 1.84e-82 | 271 |
| Msa0973540 | MtrunA17_Chr2g0308991 | 40.632 | 443 | 237 | 10 | 3 | 439 | 4 | 426 | 8.81e-107 | 328 |
| Msa0973540 | MtrunA17_Chr2g0315981 | 39.167 | 480 | 257 | 9 | 10 | 483 | 7 | 457 | 5.05e-106 | 324 |
| Msa0973540 | MtrunA17_Chr2g0316041 | 41.647 | 425 | 208 | 9 | 66 | 482 | 4 | 396 | 8.64e-103 | 315 |
| Msa0973540 | MtrunA17_Chr5g0404661 | 39.558 | 498 | 239 | 15 | 4 | 469 | 13 | 480 | 3.16e-100 | 310 |
| Msa0973540 | MtrunA17_Chr2g0316021 | 37.298 | 496 | 228 | 11 | 10 | 499 | 7 | 425 | 1.02e-96 | 299 |
| Msa0973540 | MtrunA17_Chr3g0134831 | 45.695 | 302 | 146 | 5 | 160 | 460 | 4 | 288 | 3.26e-85 | 265 |
| Msa0973540 | MtrunA17_Chr7g0276031 | 33.333 | 411 | 210 | 9 | 32 | 439 | 38 | 387 | 5.40e-69 | 228 |
| Msa0973540 | MtrunA17_Chr3g0127381 | 30.493 | 446 | 250 | 11 | 1 | 439 | 4 | 396 | 1.34e-65 | 220 |
| Msa0973540 | MtrunA17_Chr8g0346371 | 32.609 | 414 | 231 | 9 | 27 | 436 | 24 | 393 | 1.36e-62 | 212 |
| Msa0973540 | MtrunA17_Chr1g0148871 | 60.741 | 135 | 48 | 3 | 326 | 458 | 2 | 133 | 1.72e-42 | 149 |
| Msa0973540 | MtrunA17_Chr6g0452351 | 55.000 | 120 | 53 | 1 | 10 | 128 | 21 | 140 | 1.62e-41 | 145 |
| Msa0973540 | MtrunA17_Chr5g0404681 | 44.355 | 124 | 59 | 1 | 144 | 267 | 39 | 152 | 1.52e-31 | 119 |
| Msa0973540 | MtrunA17_Chr5g0404671 | 44.526 | 137 | 68 | 3 | 353 | 484 | 1 | 134 | 1.42e-30 | 117 |
| Msa0973540 | MtrunA17_Chr5g0404691 | 37.143 | 175 | 83 | 4 | 287 | 460 | 2 | 150 | 8.42e-23 | 95.1 |
| Msa0973540 | MtrunA17_Chr1g0211521 | 50.000 | 108 | 52 | 2 | 386 | 492 | 5 | 111 | 2.61e-22 | 92.0 |
| Msa0973540 | MtrunA17_Chr1g0192151 | 31.606 | 193 | 99 | 6 | 216 | 399 | 177 | 345 | 8.17e-14 | 73.6 |
| Msa0973540 | MtrunA17_Chr4g0014731 | 31.606 | 193 | 99 | 6 | 216 | 399 | 178 | 346 | 9.14e-14 | 73.2 |
| Msa0973540 | MtrunA17_Chr6g0476861 | 27.090 | 299 | 174 | 13 | 186 | 463 | 177 | 452 | 7.37e-12 | 68.2 |
| Msa0973540 | MtrunA17_Chr8g0362771 | 29.379 | 177 | 92 | 6 | 222 | 390 | 252 | 403 | 9.72e-12 | 67.8 |
| Msa0973540 | MtrunA17_Chr8g0388371 | 29.050 | 179 | 104 | 6 | 222 | 392 | 419 | 582 | 4.87e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973540 | AT5G40010.1 | 61.522 | 460 | 167 | 5 | 3 | 455 | 4 | 460 | 0.0 | 585 |
| Msa0973540 | AT3G28580.1 | 60.304 | 461 | 166 | 8 | 3 | 455 | 4 | 455 | 0.0 | 558 |
| Msa0973540 | AT3G28510.1 | 59.695 | 459 | 183 | 2 | 6 | 464 | 7 | 463 | 0.0 | 543 |
| Msa0973540 | AT3G28580.2 | 56.987 | 458 | 164 | 7 | 3 | 455 | 4 | 433 | 6.87e-179 | 511 |
| Msa0973540 | AT3G28540.2 | 57.965 | 452 | 177 | 6 | 11 | 457 | 12 | 455 | 6.11e-175 | 503 |
| Msa0973540 | AT3G28540.1 | 57.965 | 452 | 177 | 6 | 11 | 457 | 12 | 455 | 1.09e-174 | 502 |
| Msa0973540 | AT3G28610.1 | 51.266 | 474 | 182 | 8 | 10 | 463 | 6 | 450 | 2.73e-169 | 487 |
| Msa0973540 | AT3G28600.1 | 51.702 | 470 | 189 | 7 | 8 | 463 | 5 | 450 | 1.72e-167 | 482 |
| Msa0973540 | AT5G40000.1 | 49.180 | 488 | 205 | 8 | 1 | 472 | 2 | 462 | 1.53e-161 | 467 |
| Msa0973540 | AT3G28520.1 | 54.806 | 489 | 199 | 8 | 14 | 491 | 1 | 478 | 5.38e-159 | 461 |
| Msa0973540 | AT3G28600.2 | 48.085 | 470 | 167 | 7 | 8 | 463 | 5 | 411 | 3.08e-147 | 429 |
| Msa0973540 | AT3G28570.1 | 45.979 | 485 | 207 | 9 | 8 | 479 | 7 | 449 | 1.65e-145 | 425 |
| Msa0973540 | AT3G28570.2 | 45.979 | 485 | 207 | 9 | 8 | 479 | 14 | 456 | 2.42e-145 | 425 |
| Msa0973540 | AT5G57480.1 | 38.791 | 513 | 284 | 10 | 3 | 501 | 1 | 497 | 2.88e-123 | 371 |
| Msa0973540 | AT4G25835.1 | 40.042 | 477 | 273 | 7 | 3 | 475 | 1 | 468 | 2.34e-121 | 365 |
| Msa0973540 | AT4G30250.2 | 40.126 | 476 | 255 | 9 | 1 | 460 | 1 | 462 | 1.55e-112 | 343 |
| Msa0973540 | AT4G30250.1 | 40.084 | 474 | 254 | 9 | 3 | 460 | 1 | 460 | 5.10e-112 | 342 |
| Msa0973540 | AT3G50940.1 | 39.956 | 453 | 235 | 9 | 22 | 469 | 31 | 451 | 1.75e-111 | 338 |
| Msa0973540 | AT3G50930.1 | 38.776 | 490 | 272 | 11 | 18 | 502 | 73 | 539 | 8.20e-110 | 338 |
| Msa0973540 | AT5G17740.1 | 36.561 | 506 | 282 | 12 | 4 | 495 | 11 | 491 | 1.57e-102 | 318 |
| Msa0973540 | AT4G05380.1 | 39.583 | 480 | 252 | 13 | 2 | 473 | 11 | 460 | 1.73e-102 | 315 |
| Msa0973540 | AT2G18193.1 | 37.317 | 477 | 260 | 9 | 11 | 479 | 19 | 464 | 5.54e-102 | 315 |
| Msa0973540 | AT5G17760.1 | 35.897 | 507 | 270 | 10 | 4 | 485 | 11 | 487 | 1.67e-100 | 312 |
| Msa0973540 | AT5G17730.1 | 34.545 | 495 | 271 | 13 | 3 | 480 | 10 | 468 | 5.41e-97 | 301 |
| Msa0973540 | AT2G18190.1 | 35.714 | 462 | 266 | 9 | 4 | 462 | 13 | 446 | 7.21e-93 | 292 |
| Msa0973540 | AT1G43910.1 | 37.421 | 473 | 266 | 10 | 3 | 470 | 11 | 458 | 1.79e-92 | 290 |
| Msa0973540 | AT5G17750.1 | 34.571 | 431 | 221 | 8 | 4 | 424 | 11 | 390 | 2.71e-87 | 274 |
| Msa0973540 | AT2G46620.1 | 30.691 | 492 | 282 | 11 | 1 | 485 | 1 | 440 | 1.07e-73 | 242 |
| Msa0973540 | AT5G17760.2 | 32.099 | 324 | 193 | 5 | 4 | 312 | 11 | 322 | 4.58e-52 | 180 |
| Msa0973540 | AT3G28560.1 | 42.727 | 220 | 104 | 5 | 6 | 217 | 7 | 212 | 7.00e-51 | 174 |
| Msa0973540 | AT3G29800.1 | 29.923 | 391 | 208 | 11 | 101 | 486 | 71 | 400 | 7.41e-46 | 166 |
| Msa0973540 | AT4G05340.1 | 51.042 | 96 | 41 | 1 | 315 | 410 | 4 | 93 | 1.35e-23 | 95.5 |
| Msa0973540 | AT1G09100.1 | 32.124 | 193 | 98 | 6 | 216 | 399 | 177 | 345 | 1.75e-14 | 75.9 |
| Msa0973540 | AT3G05530.1 | 31.606 | 193 | 99 | 6 | 216 | 399 | 178 | 346 | 6.51e-14 | 74.3 |
| Msa0973540 | AT3G02450.1 | 24.561 | 342 | 195 | 15 | 189 | 510 | 308 | 606 | 2.33e-11 | 66.6 |
| Msa0973540 | AT2G26140.1 | 24.453 | 274 | 166 | 8 | 222 | 482 | 239 | 484 | 7.11e-11 | 65.5 |
Find 70 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACGTGGTTATCTACTTTA+TGG | 0.116491 | 6_4:+6003596 | Msa0973540:CDS |
| GAAAGTAAGGTAACTCTTTC+GGG | 0.182477 | 6_4:+6003890 | Msa0973540:CDS |
| ATTTCTCATAGAAGGTTATT+TGG | 0.200148 | 6_4:-6003022 | None:intergenic |
| TGCTTAGAACAAGTGGATTT+TGG | 0.205867 | 6_4:-6003154 | None:intergenic |
| CTCTTACATCCAACATGTTT+TGG | 0.206662 | 6_4:+6003343 | Msa0973540:CDS |
| CCAACAATCCAAGTAATAAT+TGG | 0.250050 | 6_4:+6003414 | Msa0973540:CDS |
| TGAAAGTAAGGTAACTCTTT+CGG | 0.282567 | 6_4:+6003889 | Msa0973540:CDS |
| ATCTCCTGATTTCTCATAGA+AGG | 0.330595 | 6_4:-6003030 | None:intergenic |
| CCAATTATTACTTGGATTGT+TGG | 0.332851 | 6_4:-6003414 | None:intergenic |
| TCTTGAGGAAGCAAAGAAAA+AGG | 0.342972 | 6_4:+6004240 | Msa0973540:CDS |
| TAGAAGGTTATTTGGATGTA+AGG | 0.371337 | 6_4:-6003014 | None:intergenic |
| TTGTAGCTATCAAGCTTTCA+AGG | 0.373428 | 6_4:+6004051 | Msa0973540:CDS |
| CGGGCAAAGGAAGAAGAAAA+AGG | 0.374019 | 6_4:+6003799 | Msa0973540:CDS |
| GTCAAACCTAGGCTCAATAA+TGG | 0.388651 | 6_4:+6002890 | Msa0973540:CDS |
| TCTTGAATTAACAATTGTTA+AGG | 0.391990 | 6_4:+6003688 | Msa0973540:CDS |
| TGAACTCATCTGTGATCTCT+TGG | 0.398036 | 6_4:-6003187 | None:intergenic |
| TACCTAATCCAATTATTACT+TGG | 0.404648 | 6_4:-6003422 | None:intergenic |
| AGTTAGCACTAAGATATGTT+TGG | 0.410357 | 6_4:-6003085 | None:intergenic |
| CCAGTTATTGAAAAGTTGTT+GGG | 0.411423 | 6_4:+6004121 | Msa0973540:CDS |
| ATAACCTTCTATGAGAAATC+AGG | 0.414579 | 6_4:+6003026 | Msa0973540:CDS |
| AGATGGGAATTAGTGAAATA+TGG | 0.416534 | 6_4:+6002868 | None:intergenic |
| AAATCTTCAGTGATTGACTT+TGG | 0.418717 | 6_4:-6004187 | None:intergenic |
| AAAGAGTATTATGCTAAAGT+TGG | 0.419632 | 6_4:+6003563 | Msa0973540:CDS |
| TCCAGTTATTGAAAAGTTGT+TGG | 0.424243 | 6_4:+6004120 | Msa0973540:CDS |
| AGTTCAATGGTGTCAAAGTT+TGG | 0.425897 | 6_4:+6003204 | Msa0973540:CDS |
| GCAAGTGTTTCAAAACTTGC+AGG | 0.428195 | 6_4:-6003482 | None:intergenic |
| AGGCTATAACAATGAAGAAT+AGG | 0.432830 | 6_4:+6003375 | Msa0973540:CDS |
| ATCCAAGTAATAATTGGATT+AGG | 0.448544 | 6_4:+6003420 | Msa0973540:CDS |
| GATCTTATAAAATTCAAGAA+AGG | 0.463577 | 6_4:+6003539 | Msa0973540:CDS |
| CTTTATGGACCTCCAGGAAC+CGG | 0.469613 | 6_4:+6003611 | Msa0973540:CDS |
| ATGCTAAAGTTGGAAAGGCT+TGG | 0.473908 | 6_4:+6003573 | Msa0973540:CDS |
| AACTTGATCCTGCTCTCATA+AGG | 0.478108 | 6_4:+6003993 | Msa0973540:CDS |
| TTAACAAATCTACGAAGTGC+TGG | 0.478784 | 6_4:-6002957 | None:intergenic |
| ATTAACTCAAGAGGAAGAAA+AGG | 0.484336 | 6_4:+6004333 | Msa0973540:CDS |
| ATCTTATAAAATTCAAGAAA+GGG | 0.494988 | 6_4:+6003540 | Msa0973540:CDS |
| TCATCCATGCTTAGAACAAG+TGG | 0.497876 | 6_4:-6003161 | None:intergenic |
| CTCTCGATCTCACCGGGCAA+AGG | 0.502496 | 6_4:+6003786 | Msa0973540:CDS |
| CAAAACATGTTGGATGTAAG+AGG | 0.509559 | 6_4:-6003342 | None:intergenic |
| TTCCTTGTTCCAAAACATGT+TGG | 0.518629 | 6_4:-6003352 | None:intergenic |
| GATTGTTCTCTCGATCTCAC+CGG | 0.518830 | 6_4:+6003779 | Msa0973540:CDS |
| CGTCCCCTCCTTATGAGAGC+AGG | 0.522167 | 6_4:-6004001 | None:intergenic |
| TATCTACTTTATGGACCTCC+AGG | 0.534952 | 6_4:+6003605 | Msa0973540:CDS |
| GAAACAAGAATTAACTCAAG+AGG | 0.536216 | 6_4:+6004324 | Msa0973540:CDS |
| TCAAGAGGAAGAAAAGGTTA+AGG | 0.538611 | 6_4:+6004339 | Msa0973540:CDS |
| ATTGTTCTCTCGATCTCACC+GGG | 0.546404 | 6_4:+6003780 | Msa0973540:CDS |
| AGAAGGTTATTTGGATGTAA+GGG | 0.546485 | 6_4:-6003013 | None:intergenic |
| TGGAAAGAATTTCTCATACA+TGG | 0.550415 | 6_4:-6002934 | None:intergenic |
| TGAAAATGATTGTGTTCTTG+AGG | 0.555571 | 6_4:-6003246 | None:intergenic |
| AAATTCTCAGCAACATCAGC+CGG | 0.561858 | 6_4:-6004160 | None:intergenic |
| AGCACTAAGATATGTTTGGA+TGG | 0.566183 | 6_4:-6003081 | None:intergenic |
| TGATGAGAATGATGAAAAGA+AGG | 0.571153 | 6_4:+6003832 | Msa0973540:CDS |
| GTATTATGCTAAAGTTGGAA+AGG | 0.575311 | 6_4:+6003568 | Msa0973540:CDS |
| AAATCCACTTGTTCTAAGCA+TGG | 0.575420 | 6_4:+6003157 | Msa0973540:CDS |
| GAGATCACAGATGAGTTCAA+TGG | 0.581658 | 6_4:+6003191 | Msa0973540:CDS |
| GAATTTGATTCAATCTCTTG+AGG | 0.581998 | 6_4:+6004225 | Msa0973540:CDS |
| TGCTAGCCATTATTGAGCCT+AGG | 0.582090 | 6_4:-6002896 | None:intergenic |
| TTGATCCTGCTCTCATAAGG+AGG | 0.589263 | 6_4:+6003996 | Msa0973540:CDS |
| GTTGGAAAGGCTTGGAAACG+TGG | 0.601459 | 6_4:+6003581 | Msa0973540:CDS |
| TGATCCTGCTCTCATAAGGA+GGG | 0.603026 | 6_4:+6003997 | Msa0973540:CDS |
| ACAAATCTACGAAGTGCTGG+TGG | 0.608261 | 6_4:-6002954 | None:intergenic |
| GGGAGAGACTAATATGTCAC+CGG | 0.608628 | 6_4:+6004141 | Msa0973540:CDS |
| AGACGAGCAAGCTCAGCTCA+AGG | 0.609043 | 6_4:+6004291 | Msa0973540:CDS |
| TCTCATAAGGAGGGGACGAA+TGG | 0.618415 | 6_4:+6004006 | Msa0973540:CDS |
| TCAATGGTGTCAAAGTTTGG+TGG | 0.621281 | 6_4:+6003207 | Msa0973540:CDS |
| AGTGAAATATGGTCAAACCT+AGG | 0.625856 | 6_4:+6002879 | Msa0973540:CDS |
| GATGGAATTTGGTCAGCATG+TGG | 0.626671 | 6_4:+6003929 | Msa0973540:CDS |
| GTTCATGAAATTCGCAATAG+CGG | 0.630066 | 6_4:-6003651 | None:intergenic |
| GATCCTGCTCTCATAAGGAG+GGG | 0.639749 | 6_4:+6003998 | Msa0973540:CDS |
| TTAGGTATAGAAGCACAAAG+TGG | 0.711428 | 6_4:+6003438 | Msa0973540:CDS |
| GGTCAGCATGTGGATCAGAG+AGG | 0.739195 | 6_4:+6003939 | Msa0973540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTTATAAGATCATTT+AGG | - | chr6_4:6003535-6003554 | None:intergenic | 15.0% |
| !! | ATCTTATAAAATTCAAGAAA+GGG | + | chr6_4:6003540-6003559 | Msa0973540:CDS | 15.0% |
| !!! | TGAATTTTATAAGATCATTT+AGG | - | chr6_4:6003535-6003554 | None:intergenic | 15.0% |
| !! | ATCTTATAAAATTCAAGAAA+GGG | + | chr6_4:6003540-6003559 | Msa0973540:CDS | 15.0% |
| !! | GATCTTATAAAATTCAAGAA+AGG | + | chr6_4:6003539-6003558 | Msa0973540:CDS | 20.0% |
| !! | TCTTGAATTAACAATTGTTA+AGG | + | chr6_4:6003688-6003707 | Msa0973540:CDS | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | + | chr6_4:6003918-6003937 | Msa0973540:CDS | 20.0% |
| !!! | AATTTTCACAACTAATTTTG+TGG | + | chr6_4:6003967-6003986 | Msa0973540:CDS | 20.0% |
| !! | GATCTTATAAAATTCAAGAA+AGG | + | chr6_4:6003539-6003558 | Msa0973540:CDS | 20.0% |
| !! | TCTTGAATTAACAATTGTTA+AGG | + | chr6_4:6003688-6003707 | Msa0973540:CDS | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | + | chr6_4:6003918-6003937 | Msa0973540:CDS | 20.0% |
| !!! | AATTTTCACAACTAATTTTG+TGG | + | chr6_4:6003967-6003986 | Msa0973540:CDS | 20.0% |
| ! | ATTTCTCATAGAAGGTTATT+TGG | - | chr6_4:6003025-6003044 | None:intergenic | 25.0% |
| ! | ATCCAAGTAATAATTGGATT+AGG | + | chr6_4:6003420-6003439 | Msa0973540:CDS | 25.0% |
| ! | TACCTAATCCAATTATTACT+TGG | - | chr6_4:6003425-6003444 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | + | chr6_4:6003563-6003582 | Msa0973540:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | - | chr6_4:6003860-6003879 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAAATGAAAGTA+AGG | + | chr6_4:6003877-6003896 | Msa0973540:CDS | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | + | chr6_4:6003911-6003930 | Msa0973540:CDS | 25.0% |
| !!! | TAAGGTTGATGAAAAATTAG+AGG | + | chr6_4:6004357-6004376 | Msa0973540:CDS | 25.0% |
| ! | AAAATTAGAGGAAAAAGTGA+AGG | + | chr6_4:6004369-6004388 | Msa0973540:CDS | 25.0% |
| ! | ATTTCTCATAGAAGGTTATT+TGG | - | chr6_4:6003025-6003044 | None:intergenic | 25.0% |
| ! | ATCCAAGTAATAATTGGATT+AGG | + | chr6_4:6003420-6003439 | Msa0973540:CDS | 25.0% |
| ! | TACCTAATCCAATTATTACT+TGG | - | chr6_4:6003425-6003444 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | + | chr6_4:6003563-6003582 | Msa0973540:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | - | chr6_4:6003860-6003879 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAAATGAAAGTA+AGG | + | chr6_4:6003877-6003896 | Msa0973540:CDS | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | + | chr6_4:6003911-6003930 | Msa0973540:CDS | 25.0% |
| !!! | TAAGGTTGATGAAAAATTAG+AGG | + | chr6_4:6004357-6004376 | Msa0973540:CDS | 25.0% |
| ! | AAAATTAGAGGAAAAAGTGA+AGG | + | chr6_4:6004369-6004388 | Msa0973540:CDS | 25.0% |
| TGGAAAGAATTTCTCATACA+TGG | - | chr6_4:6002937-6002956 | None:intergenic | 30.0% | |
| AGAAGGTTATTTGGATGTAA+GGG | - | chr6_4:6003016-6003035 | None:intergenic | 30.0% | |
| TAGAAGGTTATTTGGATGTA+AGG | - | chr6_4:6003017-6003036 | None:intergenic | 30.0% | |
| ATAACCTTCTATGAGAAATC+AGG | + | chr6_4:6003026-6003045 | Msa0973540:CDS | 30.0% | |
| AGTTAGCACTAAGATATGTT+TGG | - | chr6_4:6003088-6003107 | None:intergenic | 30.0% | |
| TGAAAATGATTGTGTTCTTG+AGG | - | chr6_4:6003249-6003268 | None:intergenic | 30.0% | |
| ! | ATGTCTTTTATGGAAGGTTA+GGG | - | chr6_4:6003306-6003325 | None:intergenic | 30.0% |
| AGGCTATAACAATGAAGAAT+AGG | + | chr6_4:6003375-6003394 | Msa0973540:CDS | 30.0% | |
| CCAATTATTACTTGGATTGT+TGG | - | chr6_4:6003417-6003436 | None:intergenic | 30.0% | |
| CCAACAATCCAAGTAATAAT+TGG | + | chr6_4:6003414-6003433 | Msa0973540:CDS | 30.0% | |
| !!! | AAGTTTTGAAACACTTGCTT+TGG | + | chr6_4:6003487-6003506 | Msa0973540:CDS | 30.0% |
| !!! | AGGATCTCTTCTTTCTTTTT+TGG | - | chr6_4:6003515-6003534 | None:intergenic | 30.0% |
| GTATTATGCTAAAGTTGGAA+AGG | + | chr6_4:6003568-6003587 | Msa0973540:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | + | chr6_4:6003596-6003615 | Msa0973540:CDS | 30.0% | |
| ! | GGATATCATAGTAGATTTTC+CGG | - | chr6_4:6003633-6003652 | None:intergenic | 30.0% |
| TGATGAGAATGATGAAAAGA+AGG | + | chr6_4:6003832-6003851 | Msa0973540:CDS | 30.0% | |
| TGAAAGTAAGGTAACTCTTT+CGG | + | chr6_4:6003889-6003908 | Msa0973540:CDS | 30.0% | |
| TCCAGTTATTGAAAAGTTGT+TGG | + | chr6_4:6004120-6004139 | Msa0973540:CDS | 30.0% | |
| CCAGTTATTGAAAAGTTGTT+GGG | + | chr6_4:6004121-6004140 | Msa0973540:CDS | 30.0% | |
| ! | AAATCTTCAGTGATTGACTT+TGG | - | chr6_4:6004190-6004209 | None:intergenic | 30.0% |
| GAATTTGATTCAATCTCTTG+AGG | + | chr6_4:6004225-6004244 | Msa0973540:CDS | 30.0% | |
| GAAACAAGAATTAACTCAAG+AGG | + | chr6_4:6004324-6004343 | Msa0973540:CDS | 30.0% | |
| ATTAACTCAAGAGGAAGAAA+AGG | + | chr6_4:6004333-6004352 | Msa0973540:CDS | 30.0% | |
| TGGAAAGAATTTCTCATACA+TGG | - | chr6_4:6002937-6002956 | None:intergenic | 30.0% | |
| AGAAGGTTATTTGGATGTAA+GGG | - | chr6_4:6003016-6003035 | None:intergenic | 30.0% | |
| TAGAAGGTTATTTGGATGTA+AGG | - | chr6_4:6003017-6003036 | None:intergenic | 30.0% | |
| ATAACCTTCTATGAGAAATC+AGG | + | chr6_4:6003026-6003045 | Msa0973540:CDS | 30.0% | |
| AGTTAGCACTAAGATATGTT+TGG | - | chr6_4:6003088-6003107 | None:intergenic | 30.0% | |
| TGAAAATGATTGTGTTCTTG+AGG | - | chr6_4:6003249-6003268 | None:intergenic | 30.0% | |
| ! | ATGTCTTTTATGGAAGGTTA+GGG | - | chr6_4:6003306-6003325 | None:intergenic | 30.0% |
| AGGCTATAACAATGAAGAAT+AGG | + | chr6_4:6003375-6003394 | Msa0973540:CDS | 30.0% | |
| CCAATTATTACTTGGATTGT+TGG | - | chr6_4:6003417-6003436 | None:intergenic | 30.0% | |
| CCAACAATCCAAGTAATAAT+TGG | + | chr6_4:6003414-6003433 | Msa0973540:CDS | 30.0% | |
| !!! | AAGTTTTGAAACACTTGCTT+TGG | + | chr6_4:6003487-6003506 | Msa0973540:CDS | 30.0% |
| !!! | AGGATCTCTTCTTTCTTTTT+TGG | - | chr6_4:6003515-6003534 | None:intergenic | 30.0% |
| GTATTATGCTAAAGTTGGAA+AGG | + | chr6_4:6003568-6003587 | Msa0973540:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | + | chr6_4:6003596-6003615 | Msa0973540:CDS | 30.0% | |
| ! | GGATATCATAGTAGATTTTC+CGG | - | chr6_4:6003633-6003652 | None:intergenic | 30.0% |
| TGATGAGAATGATGAAAAGA+AGG | + | chr6_4:6003832-6003851 | Msa0973540:CDS | 30.0% | |
| TGAAAGTAAGGTAACTCTTT+CGG | + | chr6_4:6003889-6003908 | Msa0973540:CDS | 30.0% | |
| TCCAGTTATTGAAAAGTTGT+TGG | + | chr6_4:6004120-6004139 | Msa0973540:CDS | 30.0% | |
| CCAGTTATTGAAAAGTTGTT+GGG | + | chr6_4:6004121-6004140 | Msa0973540:CDS | 30.0% | |
| ! | AAATCTTCAGTGATTGACTT+TGG | - | chr6_4:6004190-6004209 | None:intergenic | 30.0% |
| GAATTTGATTCAATCTCTTG+AGG | + | chr6_4:6004225-6004244 | Msa0973540:CDS | 30.0% | |
| GAAACAAGAATTAACTCAAG+AGG | + | chr6_4:6004324-6004343 | Msa0973540:CDS | 30.0% | |
| ATTAACTCAAGAGGAAGAAA+AGG | + | chr6_4:6004333-6004352 | Msa0973540:CDS | 30.0% | |
| AGTGAAATATGGTCAAACCT+AGG | + | chr6_4:6002879-6002898 | Msa0973540:CDS | 35.0% | |
| TTAACAAATCTACGAAGTGC+TGG | - | chr6_4:6002960-6002979 | None:intergenic | 35.0% | |
| ATCTCCTGATTTCTCATAGA+AGG | - | chr6_4:6003033-6003052 | None:intergenic | 35.0% | |
| AGCACTAAGATATGTTTGGA+TGG | - | chr6_4:6003084-6003103 | None:intergenic | 35.0% | |
| !! | TGCTTAGAACAAGTGGATTT+TGG | - | chr6_4:6003157-6003176 | None:intergenic | 35.0% |
| ! | AAATCCACTTGTTCTAAGCA+TGG | + | chr6_4:6003157-6003176 | Msa0973540:CDS | 35.0% |
| ! | AGTTCAATGGTGTCAAAGTT+TGG | + | chr6_4:6003204-6003223 | Msa0973540:CDS | 35.0% |
| ! | ATCTTTTCTCATCTGACGTA+GGG | - | chr6_4:6003277-6003296 | None:intergenic | 35.0% |
| ! | AATCTTTTCTCATCTGACGT+AGG | - | chr6_4:6003278-6003297 | None:intergenic | 35.0% |
| ! | GATGTCTTTTATGGAAGGTT+AGG | - | chr6_4:6003307-6003326 | None:intergenic | 35.0% |
| ! | ATCACGATGTCTTTTATGGA+AGG | - | chr6_4:6003312-6003331 | None:intergenic | 35.0% |
| ! | TGAGATCACGATGTCTTTTA+TGG | - | chr6_4:6003316-6003335 | None:intergenic | 35.0% |
| CAAAACATGTTGGATGTAAG+AGG | - | chr6_4:6003345-6003364 | None:intergenic | 35.0% | |
| ! | CTCTTACATCCAACATGTTT+TGG | + | chr6_4:6003343-6003362 | Msa0973540:CDS | 35.0% |
| !!! | ATCCAACATGTTTTGGAACA+AGG | + | chr6_4:6003350-6003369 | Msa0973540:CDS | 35.0% |
| TTCCTTGTTCCAAAACATGT+TGG | - | chr6_4:6003355-6003374 | None:intergenic | 35.0% | |
| !!! | ACATGTTTTGGAACAAGGAA+AGG | + | chr6_4:6003355-6003374 | Msa0973540:CDS | 35.0% |
| ! | TTAGGTATAGAAGCACAAAG+TGG | + | chr6_4:6003438-6003457 | Msa0973540:CDS | 35.0% |
| GTTCATGAAATTCGCAATAG+CGG | - | chr6_4:6003654-6003673 | None:intergenic | 35.0% | |
| GAAAGTAAGGTAACTCTTTC+GGG | + | chr6_4:6003890-6003909 | Msa0973540:CDS | 35.0% | |
| TTGTAGCTATCAAGCTTTCA+AGG | + | chr6_4:6004051-6004070 | Msa0973540:CDS | 35.0% | |
| ! | CCCAACAACTTTTCAATAAC+TGG | - | chr6_4:6004124-6004143 | None:intergenic | 35.0% |
| TCTTGAGGAAGCAAAGAAAA+AGG | + | chr6_4:6004240-6004259 | Msa0973540:CDS | 35.0% | |
| TCAAGAGGAAGAAAAGGTTA+AGG | + | chr6_4:6004339-6004358 | Msa0973540:CDS | 35.0% | |
| AGTGAAATATGGTCAAACCT+AGG | + | chr6_4:6002879-6002898 | Msa0973540:CDS | 35.0% | |
| TTAACAAATCTACGAAGTGC+TGG | - | chr6_4:6002960-6002979 | None:intergenic | 35.0% | |
| ATCTCCTGATTTCTCATAGA+AGG | - | chr6_4:6003033-6003052 | None:intergenic | 35.0% | |
| AGCACTAAGATATGTTTGGA+TGG | - | chr6_4:6003084-6003103 | None:intergenic | 35.0% | |
| !! | TGCTTAGAACAAGTGGATTT+TGG | - | chr6_4:6003157-6003176 | None:intergenic | 35.0% |
| ! | AAATCCACTTGTTCTAAGCA+TGG | + | chr6_4:6003157-6003176 | Msa0973540:CDS | 35.0% |
| ! | AGTTCAATGGTGTCAAAGTT+TGG | + | chr6_4:6003204-6003223 | Msa0973540:CDS | 35.0% |
| ! | ATCTTTTCTCATCTGACGTA+GGG | - | chr6_4:6003277-6003296 | None:intergenic | 35.0% |
| ! | AATCTTTTCTCATCTGACGT+AGG | - | chr6_4:6003278-6003297 | None:intergenic | 35.0% |
| ! | GATGTCTTTTATGGAAGGTT+AGG | - | chr6_4:6003307-6003326 | None:intergenic | 35.0% |
| ! | ATCACGATGTCTTTTATGGA+AGG | - | chr6_4:6003312-6003331 | None:intergenic | 35.0% |
| ! | TGAGATCACGATGTCTTTTA+TGG | - | chr6_4:6003316-6003335 | None:intergenic | 35.0% |
| CAAAACATGTTGGATGTAAG+AGG | - | chr6_4:6003345-6003364 | None:intergenic | 35.0% | |
| ! | CTCTTACATCCAACATGTTT+TGG | + | chr6_4:6003343-6003362 | Msa0973540:CDS | 35.0% |
| !!! | ATCCAACATGTTTTGGAACA+AGG | + | chr6_4:6003350-6003369 | Msa0973540:CDS | 35.0% |
| TTCCTTGTTCCAAAACATGT+TGG | - | chr6_4:6003355-6003374 | None:intergenic | 35.0% | |
| !!! | ACATGTTTTGGAACAAGGAA+AGG | + | chr6_4:6003355-6003374 | Msa0973540:CDS | 35.0% |
| ! | TTAGGTATAGAAGCACAAAG+TGG | + | chr6_4:6003438-6003457 | Msa0973540:CDS | 35.0% |
| GTTCATGAAATTCGCAATAG+CGG | - | chr6_4:6003654-6003673 | None:intergenic | 35.0% | |
| GAAAGTAAGGTAACTCTTTC+GGG | + | chr6_4:6003890-6003909 | Msa0973540:CDS | 35.0% | |
| TTGTAGCTATCAAGCTTTCA+AGG | + | chr6_4:6004051-6004070 | Msa0973540:CDS | 35.0% | |
| ! | CCCAACAACTTTTCAATAAC+TGG | - | chr6_4:6004124-6004143 | None:intergenic | 35.0% |
| TCTTGAGGAAGCAAAGAAAA+AGG | + | chr6_4:6004240-6004259 | Msa0973540:CDS | 35.0% | |
| TCAAGAGGAAGAAAAGGTTA+AGG | + | chr6_4:6004339-6004358 | Msa0973540:CDS | 35.0% | |
| GTCAAACCTAGGCTCAATAA+TGG | + | chr6_4:6002890-6002909 | Msa0973540:CDS | 40.0% | |
| TCATCCATGCTTAGAACAAG+TGG | - | chr6_4:6003164-6003183 | None:intergenic | 40.0% | |
| TGAACTCATCTGTGATCTCT+TGG | - | chr6_4:6003190-6003209 | None:intergenic | 40.0% | |
| GAGATCACAGATGAGTTCAA+TGG | + | chr6_4:6003191-6003210 | Msa0973540:CDS | 40.0% | |
| ! | TCAATGGTGTCAAAGTTTGG+TGG | + | chr6_4:6003207-6003226 | Msa0973540:CDS | 40.0% |
| GCAAGTGTTTCAAAACTTGC+AGG | - | chr6_4:6003485-6003504 | None:intergenic | 40.0% | |
| ATGCTAAAGTTGGAAAGGCT+TGG | + | chr6_4:6003573-6003592 | Msa0973540:CDS | 40.0% | |
| TATCTACTTTATGGACCTCC+AGG | + | chr6_4:6003605-6003624 | Msa0973540:CDS | 40.0% | |
| ! | ATAGTAGATTTTCCGGTTCC+TGG | - | chr6_4:6003626-6003645 | None:intergenic | 40.0% |
| ! | CTTTTTCTTCTTCCTTTGCC+CGG | - | chr6_4:6003801-6003820 | None:intergenic | 40.0% |
| AACTTGATCCTGCTCTCATA+AGG | + | chr6_4:6003993-6004012 | Msa0973540:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+CGG | - | chr6_4:6004163-6004182 | None:intergenic | 40.0% | |
| GGAAGCAAAGAAAAAGGATG+AGG | + | chr6_4:6004246-6004265 | Msa0973540:CDS | 40.0% | |
| AGCAAAGAAAAAGGATGAGG+AGG | + | chr6_4:6004249-6004268 | Msa0973540:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | + | chr6_4:6004376-6004395 | Msa0973540:CDS | 40.0% | |
| GTCAAACCTAGGCTCAATAA+TGG | + | chr6_4:6002890-6002909 | Msa0973540:CDS | 40.0% | |
| TCATCCATGCTTAGAACAAG+TGG | - | chr6_4:6003164-6003183 | None:intergenic | 40.0% | |
| TGAACTCATCTGTGATCTCT+TGG | - | chr6_4:6003190-6003209 | None:intergenic | 40.0% | |
| GAGATCACAGATGAGTTCAA+TGG | + | chr6_4:6003191-6003210 | Msa0973540:CDS | 40.0% | |
| ! | TCAATGGTGTCAAAGTTTGG+TGG | + | chr6_4:6003207-6003226 | Msa0973540:CDS | 40.0% |
| GCAAGTGTTTCAAAACTTGC+AGG | - | chr6_4:6003485-6003504 | None:intergenic | 40.0% | |
| ATGCTAAAGTTGGAAAGGCT+TGG | + | chr6_4:6003573-6003592 | Msa0973540:CDS | 40.0% | |
| TATCTACTTTATGGACCTCC+AGG | + | chr6_4:6003605-6003624 | Msa0973540:CDS | 40.0% | |
| ! | ATAGTAGATTTTCCGGTTCC+TGG | - | chr6_4:6003626-6003645 | None:intergenic | 40.0% |
| ! | CTTTTTCTTCTTCCTTTGCC+CGG | - | chr6_4:6003801-6003820 | None:intergenic | 40.0% |
| AACTTGATCCTGCTCTCATA+AGG | + | chr6_4:6003993-6004012 | Msa0973540:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+CGG | - | chr6_4:6004163-6004182 | None:intergenic | 40.0% | |
| GGAAGCAAAGAAAAAGGATG+AGG | + | chr6_4:6004246-6004265 | Msa0973540:CDS | 40.0% | |
| AGCAAAGAAAAAGGATGAGG+AGG | + | chr6_4:6004249-6004268 | Msa0973540:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | + | chr6_4:6004376-6004395 | Msa0973540:CDS | 40.0% | |
| TGCTAGCCATTATTGAGCCT+AGG | - | chr6_4:6002899-6002918 | None:intergenic | 45.0% | |
| !! | ACAAATCTACGAAGTGCTGG+TGG | - | chr6_4:6002957-6002976 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+CGG | + | chr6_4:6003779-6003798 | Msa0973540:CDS | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | + | chr6_4:6003780-6003799 | Msa0973540:CDS | 45.0% | |
| CGGGCAAAGGAAGAAGAAAA+AGG | + | chr6_4:6003799-6003818 | Msa0973540:CDS | 45.0% | |
| GATGGAATTTGGTCAGCATG+TGG | + | chr6_4:6003929-6003948 | Msa0973540:CDS | 45.0% | |
| TTGATCCTGCTCTCATAAGG+AGG | + | chr6_4:6003996-6004015 | Msa0973540:CDS | 45.0% | |
| TGATCCTGCTCTCATAAGGA+GGG | + | chr6_4:6003997-6004016 | Msa0973540:CDS | 45.0% | |
| GGGAGAGACTAATATGTCAC+CGG | + | chr6_4:6004141-6004160 | Msa0973540:CDS | 45.0% | |
| TGCTAGCCATTATTGAGCCT+AGG | - | chr6_4:6002899-6002918 | None:intergenic | 45.0% | |
| !! | ACAAATCTACGAAGTGCTGG+TGG | - | chr6_4:6002957-6002976 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+CGG | + | chr6_4:6003779-6003798 | Msa0973540:CDS | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | + | chr6_4:6003780-6003799 | Msa0973540:CDS | 45.0% | |
| CGGGCAAAGGAAGAAGAAAA+AGG | + | chr6_4:6003799-6003818 | Msa0973540:CDS | 45.0% | |
| GATGGAATTTGGTCAGCATG+TGG | + | chr6_4:6003929-6003948 | Msa0973540:CDS | 45.0% | |
| TTGATCCTGCTCTCATAAGG+AGG | + | chr6_4:6003996-6004015 | Msa0973540:CDS | 45.0% | |
| TGATCCTGCTCTCATAAGGA+GGG | + | chr6_4:6003997-6004016 | Msa0973540:CDS | 45.0% | |
| GGGAGAGACTAATATGTCAC+CGG | + | chr6_4:6004141-6004160 | Msa0973540:CDS | 45.0% | |
| GTTGGAAAGGCTTGGAAACG+TGG | + | chr6_4:6003581-6003600 | Msa0973540:CDS | 50.0% | |
| CTTTATGGACCTCCAGGAAC+CGG | + | chr6_4:6003611-6003630 | Msa0973540:CDS | 50.0% | |
| ! | GTAGATTTTCCGGTTCCTGG+AGG | - | chr6_4:6003623-6003642 | None:intergenic | 50.0% |
| GATCCTGCTCTCATAAGGAG+GGG | + | chr6_4:6003998-6004017 | Msa0973540:CDS | 50.0% | |
| TCTCATAAGGAGGGGACGAA+TGG | + | chr6_4:6004006-6004025 | Msa0973540:CDS | 50.0% | |
| GTTGGAAAGGCTTGGAAACG+TGG | + | chr6_4:6003581-6003600 | Msa0973540:CDS | 50.0% | |
| CTTTATGGACCTCCAGGAAC+CGG | + | chr6_4:6003611-6003630 | Msa0973540:CDS | 50.0% | |
| ! | GTAGATTTTCCGGTTCCTGG+AGG | - | chr6_4:6003623-6003642 | None:intergenic | 50.0% |
| GATCCTGCTCTCATAAGGAG+GGG | + | chr6_4:6003998-6004017 | Msa0973540:CDS | 50.0% | |
| TCTCATAAGGAGGGGACGAA+TGG | + | chr6_4:6004006-6004025 | Msa0973540:CDS | 50.0% | |
| GGTCAGCATGTGGATCAGAG+AGG | + | chr6_4:6003939-6003958 | Msa0973540:CDS | 55.0% | |
| AGACGAGCAAGCTCAGCTCA+AGG | + | chr6_4:6004291-6004310 | Msa0973540:CDS | 55.0% | |
| GGTCAGCATGTGGATCAGAG+AGG | + | chr6_4:6003939-6003958 | Msa0973540:CDS | 55.0% | |
| AGACGAGCAAGCTCAGCTCA+AGG | + | chr6_4:6004291-6004310 | Msa0973540:CDS | 55.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | + | chr6_4:6003786-6003805 | Msa0973540:CDS | 60.0% | |
| CGTCCCCTCCTTATGAGAGC+AGG | - | chr6_4:6004004-6004023 | None:intergenic | 60.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | + | chr6_4:6003786-6003805 | Msa0973540:CDS | 60.0% | |
| CGTCCCCTCCTTATGAGAGC+AGG | - | chr6_4:6004004-6004023 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 6002870 | 6004411 | 6002870 | ID=Msa0973540;Name=Msa0973540 |
| chr6_4 | mRNA | 6002870 | 6004411 | 6002870 | ID=Msa0973540-mRNA-1;Parent=Msa0973540;Name=Msa0973540-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|513 |
| chr6_4 | exon | 6002870 | 6004411 | 6002870 | ID=Msa0973540-mRNA-1:exon:2527;Parent=Msa0973540-mRNA-1 |
| chr6_4 | CDS | 6002870 | 6004411 | 6002870 | ID=Msa0973540-mRNA-1:cds;Parent=Msa0973540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
