Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870840 | XP_027358170.1 | 56.863 | 357 | 62 | 7 | 1 | 266 | 103 | 458 | 1.41e-123 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870840 | sp|Q9FLD5|ASD_ARATH | 46.648 | 358 | 96 | 9 | 1 | 263 | 103 | 460 | 2.16e-92 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870840 | G7KKD8 | 60.209 | 382 | 82 | 7 | 1 | 316 | 82 | 459 | 8.86e-136 | 403 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0419910 | Msa0870840 | 0.805980 | 1.027364e-49 | -8.615850e-47 |
| Msa0870830 | Msa0870840 | 0.815508 | 8.918823e-52 | -8.615850e-47 |
| Msa0870840 | Msa0903990 | 0.802787 | 4.752450e-49 | -8.615850e-47 |
| Msa0870840 | Msa0904010 | 0.825253 | 5.184377e-54 | -8.615850e-47 |
| Msa0870840 | Msa0936530 | 0.822937 | 1.812948e-53 | -8.615850e-47 |
| Msa0870840 | Msa0936540 | 0.834487 | 2.913909e-56 | -8.615850e-47 |
| Msa0870840 | Msa0936550 | 0.804663 | 1.938761e-49 | -8.615850e-47 |
| Msa0870840 | Msa0936560 | 0.908251 | 2.097571e-81 | -8.615850e-47 |
| Msa0870840 | Msa0973520 | 0.831439 | 1.668394e-55 | -8.615850e-47 |
| Msa0870840 | Msa0973530 | 0.818739 | 1.674946e-52 | -8.615850e-47 |
| Msa0870840 | Msa0973540 | 0.916377 | 1.917375e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870840 | MtrunA17_Chr6g0466811 | 55.639 | 399 | 84 | 8 | 1 | 321 | 115 | 498 | 6.91e-129 | 377 |
| Msa0870840 | MtrunA17_Chr6g0452481 | 64.667 | 300 | 45 | 6 | 76 | 316 | 5 | 302 | 1.72e-118 | 343 |
| Msa0870840 | MtrunA17_Chr6g0452361 | 67.719 | 285 | 25 | 3 | 94 | 321 | 1 | 275 | 4.49e-113 | 328 |
| Msa0870840 | MtrunA17_Chr6g0452391 | 80.000 | 200 | 12 | 6 | 1 | 175 | 103 | 299 | 4.70e-101 | 306 |
| Msa0870840 | MtrunA17_Chr6g0452391 | 90.260 | 154 | 15 | 0 | 166 | 319 | 358 | 511 | 4.24e-79 | 249 |
| Msa0870840 | MtrunA17_Chr6g0452371 | 70.000 | 200 | 32 | 4 | 1 | 175 | 105 | 301 | 2.00e-88 | 274 |
| Msa0870840 | MtrunA17_Chr6g0452371 | 92.857 | 154 | 11 | 0 | 166 | 319 | 360 | 513 | 1.17e-83 | 261 |
| Msa0870840 | MtrunA17_Chr2g0292561 | 42.778 | 360 | 122 | 9 | 1 | 277 | 105 | 463 | 3.17e-87 | 269 |
| Msa0870840 | MtrunA17_Chr6g0452401 | 66.138 | 189 | 41 | 4 | 1 | 167 | 81 | 268 | 4.85e-74 | 235 |
| Msa0870840 | MtrunA17_Chr6g0452401 | 83.459 | 133 | 20 | 1 | 166 | 298 | 347 | 477 | 4.93e-62 | 204 |
| Msa0870840 | MtrunA17_Chr6g0452411 | 65.608 | 189 | 42 | 4 | 1 | 167 | 1 | 188 | 2.93e-73 | 232 |
| Msa0870840 | MtrunA17_Chr6g0452411 | 80.000 | 135 | 25 | 1 | 166 | 300 | 265 | 397 | 9.06e-63 | 204 |
| Msa0870840 | MtrunA17_Chr6g0452451 | 65.608 | 189 | 41 | 5 | 1 | 167 | 105 | 291 | 1.11e-70 | 228 |
| Msa0870840 | MtrunA17_Chr6g0452451 | 82.836 | 134 | 21 | 1 | 166 | 299 | 368 | 499 | 3.27e-62 | 206 |
| Msa0870840 | MtrunA17_Chr7g0215951 | 57.292 | 192 | 55 | 5 | 1 | 167 | 101 | 290 | 8.50e-67 | 217 |
| Msa0870840 | MtrunA17_Chr7g0215951 | 73.529 | 102 | 26 | 1 | 166 | 267 | 360 | 460 | 1.57e-44 | 158 |
| Msa0870840 | MtrunA17_Chr2g0315921 | 37.714 | 350 | 139 | 10 | 1 | 276 | 102 | 446 | 2.69e-65 | 212 |
| Msa0870840 | MtrunA17_Chr2g0315911 | 37.822 | 349 | 141 | 12 | 1 | 279 | 104 | 446 | 3.67e-63 | 207 |
| Msa0870840 | MtrunA17_Chr2g0315991 | 36.269 | 386 | 161 | 13 | 1 | 318 | 98 | 466 | 8.03e-63 | 206 |
| Msa0870840 | MtrunA17_Chr2g0316041 | 37.190 | 363 | 149 | 12 | 1 | 290 | 40 | 396 | 4.99e-62 | 203 |
| Msa0870840 | MtrunA17_Chr5g0404651 | 33.156 | 377 | 165 | 7 | 1 | 296 | 107 | 477 | 7.52e-62 | 204 |
| Msa0870840 | MtrunA17_Chr2g0315981 | 35.616 | 365 | 157 | 9 | 1 | 291 | 97 | 457 | 4.35e-61 | 201 |
| Msa0870840 | MtrunA17_Chr2g0315971 | 36.494 | 348 | 148 | 9 | 1 | 280 | 97 | 439 | 5.94e-59 | 201 |
| Msa0870840 | MtrunA17_Chr2g0315971 | 40.000 | 245 | 83 | 5 | 81 | 267 | 465 | 703 | 7.66e-48 | 171 |
| Msa0870840 | MtrunA17_Chr8g0372701 | 35.655 | 359 | 153 | 6 | 1 | 285 | 117 | 471 | 8.84e-59 | 196 |
| Msa0870840 | MtrunA17_Chr4g0059811 | 44.978 | 229 | 92 | 7 | 1 | 204 | 105 | 324 | 5.37e-56 | 189 |
| Msa0870840 | MtrunA17_Chr4g0059811 | 55.000 | 140 | 59 | 3 | 166 | 302 | 371 | 509 | 3.09e-43 | 155 |
| Msa0870840 | MtrunA17_Chr1g0155131 | 49.738 | 191 | 77 | 5 | 1 | 175 | 102 | 289 | 3.99e-55 | 186 |
| Msa0870840 | MtrunA17_Chr1g0155131 | 60.000 | 120 | 44 | 2 | 166 | 285 | 351 | 466 | 5.80e-42 | 151 |
| Msa0870840 | MtrunA17_Chr1g0155121 | 49.738 | 191 | 71 | 5 | 1 | 167 | 98 | 287 | 2.52e-53 | 182 |
| Msa0870840 | MtrunA17_Chr1g0155121 | 65.347 | 101 | 34 | 1 | 166 | 266 | 361 | 460 | 8.91e-37 | 137 |
| Msa0870840 | MtrunA17_Chr5g0404661 | 32.692 | 364 | 154 | 9 | 1 | 277 | 121 | 480 | 3.63e-49 | 171 |
| Msa0870840 | MtrunA17_Chr2g0316021 | 32.713 | 376 | 137 | 12 | 1 | 307 | 97 | 425 | 1.31e-45 | 160 |
| Msa0870840 | MtrunA17_Chr8g0346371 | 31.229 | 301 | 150 | 8 | 1 | 247 | 99 | 396 | 4.72e-40 | 146 |
| Msa0870840 | MtrunA17_Chr3g0134831 | 34.483 | 261 | 98 | 7 | 78 | 268 | 31 | 288 | 6.16e-40 | 142 |
| Msa0870840 | MtrunA17_Chr3g0127381 | 29.139 | 302 | 151 | 9 | 1 | 247 | 103 | 396 | 1.06e-39 | 145 |
| Msa0870840 | MtrunA17_Chr7g0276031 | 31.834 | 289 | 146 | 7 | 4 | 247 | 105 | 387 | 1.70e-38 | 142 |
| Msa0870840 | MtrunA17_Chr4g0072491 | 40.704 | 199 | 91 | 5 | 1 | 175 | 98 | 293 | 3.12e-38 | 142 |
| Msa0870840 | MtrunA17_Chr4g0072491 | 53.488 | 86 | 36 | 1 | 166 | 247 | 356 | 441 | 2.15e-22 | 97.4 |
| Msa0870840 | MtrunA17_Chr2g0308991 | 40.860 | 186 | 79 | 5 | 4 | 166 | 102 | 279 | 1.26e-34 | 132 |
| Msa0870840 | MtrunA17_Chr2g0308991 | 48.193 | 83 | 41 | 2 | 166 | 247 | 345 | 426 | 9.27e-19 | 86.7 |
| Msa0870840 | MtrunA17_Chr1g0148871 | 60.396 | 101 | 39 | 1 | 166 | 266 | 34 | 133 | 4.26e-31 | 115 |
| Msa0870840 | MtrunA17_Chr5g0404671 | 43.939 | 132 | 66 | 3 | 166 | 292 | 6 | 134 | 1.64e-27 | 105 |
| Msa0870840 | MtrunA17_Chr1g0211521 | 50.000 | 108 | 52 | 2 | 194 | 300 | 5 | 111 | 5.65e-23 | 92.0 |
| Msa0870840 | MtrunA17_Chr5g0404691 | 44.762 | 105 | 54 | 2 | 165 | 268 | 49 | 150 | 7.41e-20 | 84.7 |
| Msa0870840 | MtrunA17_Chr5g0404681 | 36.207 | 116 | 55 | 4 | 42 | 140 | 39 | 152 | 7.09e-16 | 73.9 |
| Msa0870840 | MtrunA17_Chr2g0315961 | 45.714 | 70 | 34 | 2 | 194 | 263 | 1 | 66 | 2.07e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870840 | AT3G28580.2 | 50.450 | 333 | 94 | 6 | 1 | 263 | 102 | 433 | 7.43e-105 | 315 |
| Msa0870840 | AT5G40010.1 | 46.648 | 358 | 96 | 9 | 1 | 263 | 103 | 460 | 2.19e-93 | 287 |
| Msa0870840 | AT5G40000.1 | 42.978 | 356 | 110 | 8 | 6 | 280 | 119 | 462 | 7.92e-84 | 261 |
| Msa0870840 | AT3G28570.1 | 41.274 | 361 | 115 | 9 | 3 | 287 | 110 | 449 | 1.50e-80 | 252 |
| Msa0870840 | AT3G28570.2 | 41.274 | 361 | 115 | 9 | 3 | 287 | 117 | 456 | 1.76e-80 | 252 |
| Msa0870840 | AT3G28600.1 | 43.182 | 352 | 104 | 10 | 3 | 271 | 112 | 450 | 2.35e-80 | 252 |
| Msa0870840 | AT3G28610.1 | 41.127 | 355 | 108 | 10 | 3 | 271 | 111 | 450 | 1.74e-79 | 250 |
| Msa0870840 | AT3G28600.2 | 48.551 | 276 | 73 | 7 | 64 | 271 | 137 | 411 | 2.26e-73 | 233 |
| Msa0870840 | AT3G28510.1 | 39.837 | 369 | 117 | 12 | 1 | 272 | 103 | 463 | 2.14e-64 | 212 |
| Msa0870840 | AT3G50940.1 | 34.670 | 349 | 150 | 8 | 1 | 277 | 109 | 451 | 4.28e-59 | 196 |
| Msa0870840 | AT3G50930.1 | 34.704 | 389 | 165 | 10 | 4 | 310 | 158 | 539 | 4.37e-59 | 199 |
| Msa0870840 | AT3G28580.1 | 52.105 | 190 | 68 | 3 | 1 | 167 | 102 | 291 | 5.59e-59 | 197 |
| Msa0870840 | AT3G28580.1 | 70.000 | 100 | 27 | 2 | 166 | 263 | 357 | 455 | 3.19e-39 | 144 |
| Msa0870840 | AT5G17760.1 | 35.224 | 335 | 126 | 7 | 41 | 293 | 162 | 487 | 1.45e-57 | 194 |
| Msa0870840 | AT3G28540.2 | 37.119 | 361 | 122 | 11 | 1 | 265 | 104 | 455 | 4.24e-56 | 190 |
| Msa0870840 | AT3G28540.1 | 37.119 | 361 | 122 | 11 | 1 | 265 | 104 | 455 | 5.55e-56 | 189 |
| Msa0870840 | AT5G17740.1 | 32.817 | 387 | 173 | 9 | 1 | 303 | 108 | 491 | 1.35e-55 | 189 |
| Msa0870840 | AT2G18193.1 | 32.418 | 364 | 156 | 8 | 4 | 287 | 111 | 464 | 7.63e-52 | 178 |
| Msa0870840 | AT5G17730.1 | 30.663 | 362 | 164 | 9 | 7 | 288 | 114 | 468 | 3.71e-51 | 176 |
| Msa0870840 | AT4G05380.1 | 33.903 | 351 | 148 | 9 | 6 | 281 | 119 | 460 | 6.48e-51 | 175 |
| Msa0870840 | AT2G18190.1 | 31.034 | 348 | 152 | 7 | 1 | 270 | 109 | 446 | 3.21e-49 | 171 |
| Msa0870840 | AT4G30250.2 | 32.402 | 358 | 149 | 10 | 1 | 268 | 108 | 462 | 7.77e-49 | 171 |
| Msa0870840 | AT4G30250.1 | 32.402 | 358 | 149 | 10 | 1 | 268 | 106 | 460 | 9.34e-49 | 171 |
| Msa0870840 | AT1G43910.1 | 33.051 | 354 | 147 | 8 | 4 | 278 | 116 | 458 | 1.40e-46 | 164 |
| Msa0870840 | AT5G17750.1 | 29.393 | 313 | 134 | 7 | 1 | 232 | 84 | 390 | 6.88e-44 | 155 |
| Msa0870840 | AT2G46620.1 | 29.191 | 346 | 187 | 10 | 1 | 293 | 100 | 440 | 2.19e-42 | 153 |
| Msa0870840 | AT3G28520.1 | 59.420 | 138 | 51 | 2 | 166 | 299 | 342 | 478 | 6.84e-40 | 146 |
| Msa0870840 | AT3G28520.1 | 50.909 | 165 | 54 | 5 | 36 | 175 | 123 | 285 | 7.35e-38 | 140 |
| Msa0870840 | AT5G57480.1 | 40.201 | 199 | 92 | 5 | 1 | 175 | 98 | 293 | 1.53e-38 | 143 |
| Msa0870840 | AT5G57480.1 | 36.054 | 147 | 83 | 4 | 166 | 309 | 359 | 497 | 2.26e-22 | 97.8 |
| Msa0870840 | AT4G25835.1 | 38.693 | 199 | 95 | 5 | 1 | 175 | 98 | 293 | 7.66e-36 | 135 |
| Msa0870840 | AT4G25835.1 | 42.623 | 122 | 63 | 3 | 166 | 283 | 350 | 468 | 5.72e-23 | 99.4 |
| Msa0870840 | AT3G29800.1 | 26.361 | 349 | 173 | 14 | 5 | 294 | 77 | 400 | 9.18e-27 | 109 |
| Msa0870840 | AT5G17760.2 | 37.589 | 141 | 72 | 3 | 41 | 165 | 162 | 302 | 7.61e-26 | 105 |
| Msa0870840 | AT3G28560.1 | 37.398 | 123 | 46 | 5 | 1 | 98 | 96 | 212 | 9.16e-16 | 76.3 |
| Msa0870840 | AT4G05340.1 | 60.417 | 48 | 19 | 0 | 171 | 218 | 46 | 93 | 4.35e-12 | 62.0 |
Find 42 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACAATCCAAGTAATAAT+TGG | 0.251150 | 6_1:+5452888 | Msa0870840:CDS |
| TATTACTTGGATTGTTGGTT+AGG | 0.281001 | 6_1:-5452883 | None:intergenic |
| CCAATTATTACTTGGATTGT+TGG | 0.323179 | 6_1:-5452888 | None:intergenic |
| TCTTGAGGAAGCAAAGAAAA+AGG | 0.342972 | 6_1:+5458430 | Msa0870840:CDS |
| TTGTAGCTATCAAGCTTTCA+AGG | 0.373428 | 6_1:+5458241 | Msa0870840:CDS |
| GATTGTTGGTTAGGGTTAAG+AGG | 0.383546 | 6_1:-5452874 | None:intergenic |
| TCTTGAATTAACAATTGTTA+AGG | 0.391990 | 6_1:+5453162 | Msa0870840:CDS |
| TGAACTCATCTGTGATCTCT+TGG | 0.398036 | 6_1:-5452706 | None:intergenic |
| TACCTAATCCAATTATTACT+TGG | 0.404648 | 6_1:-5452896 | None:intergenic |
| CCAGTTATTGAAAAGTTGTT+GGG | 0.411423 | 6_1:+5458311 | Msa0870840:CDS |
| AAATCTTCAGTGATTGACTT+TGG | 0.418717 | 6_1:-5458377 | None:intergenic |
| AAAGAGTATTATGCTAAAGT+TGG | 0.419632 | 6_1:+5453037 | Msa0870840:CDS |
| TCCAGTTATTGAAAAGTTGT+TGG | 0.424243 | 6_1:+5458310 | Msa0870840:CDS |
| AGTTCAATGGTGTCAAAGTT+TGG | 0.425897 | 6_1:+5452723 | Msa0870840:CDS |
| GCAAGTGTTTCAAAACTTGC+AGG | 0.428195 | 6_1:-5452956 | None:intergenic |
| ATCCAAGTAATAATTGGATT+AGG | 0.448544 | 6_1:+5452894 | Msa0870840:CDS |
| ATTACTTGGATTGTTGGTTA+GGG | 0.450933 | 6_1:-5452882 | None:intergenic |
| GATCTTATAAAATTCAAGAA+AGG | 0.463577 | 6_1:+5453013 | Msa0870840:CDS |
| ATGCTAAAGTTGGAAAGGCT+TGG | 0.473908 | 6_1:+5453047 | Msa0870840:CDS |
| AACTTGATCCTGCTCTCATA+AGG | 0.478108 | 6_1:+5458183 | Msa0870840:CDS |
| ATTAACTCAAGAGGAAGAAA+AGG | 0.484336 | 6_1:+5458523 | Msa0870840:CDS |
| ATCTTATAAAATTCAAGAAA+GGG | 0.494988 | 6_1:+5453014 | Msa0870840:CDS |
| CGTCCCCTCCTTATGAGAGC+AGG | 0.522167 | 6_1:-5458191 | None:intergenic |
| GAAACAAGAATTAACTCAAG+AGG | 0.536216 | 6_1:+5458514 | Msa0870840:CDS |
| TCAAGAGGAAGAAAAGGTTA+AGG | 0.538611 | 6_1:+5458529 | Msa0870840:CDS |
| GGTTAAGAGGTAGTGATGAG+AGG | 0.554164 | 6_1:-5452861 | None:intergenic |
| TGAAAATGATTGTGTTCTTG+AGG | 0.555571 | 6_1:-5452765 | None:intergenic |
| AAATTCTCAGCAACATCAGC+CGG | 0.561858 | 6_1:-5458350 | None:intergenic |
| GTATTATGCTAAAGTTGGAA+AGG | 0.575311 | 6_1:+5453042 | Msa0870840:CDS |
| GAGATCACAGATGAGTTCAA+TGG | 0.581658 | 6_1:+5452710 | Msa0870840:CDS |
| GAATTTGATTCAATCTCTTG+AGG | 0.581998 | 6_1:+5458415 | Msa0870840:CDS |
| TTGATCCTGCTCTCATAAGG+AGG | 0.589263 | 6_1:+5458186 | Msa0870840:CDS |
| GTTGGAAAGGCTTGGAAACG+TGG | 0.601459 | 6_1:+5453055 | Msa0870840:CDS |
| TGATCCTGCTCTCATAAGGA+GGG | 0.603026 | 6_1:+5458187 | Msa0870840:CDS |
| GGGAGAGACTAATATGTCAC+CGG | 0.608628 | 6_1:+5458331 | Msa0870840:CDS |
| AGACGAGCAAGCTCAGCTCA+AGG | 0.609043 | 6_1:+5458481 | Msa0870840:CDS |
| TCTCATAAGGAGGGGACGAA+TGG | 0.618415 | 6_1:+5458196 | Msa0870840:CDS |
| TCAATGGTGTCAAAGTTTGG+TGG | 0.621281 | 6_1:+5452726 | Msa0870840:CDS |
| GTTCATGAAATTCGCAATAG+CGG | 0.630066 | 6_1:-5453125 | None:intergenic |
| GATCCTGCTCTCATAAGGAG+GGG | 0.639749 | 6_1:+5458188 | Msa0870840:CDS |
| TTAGGTATAGAAGCACAAAG+TGG | 0.711428 | 6_1:+5452912 | Msa0870840:intron |
| GGTCAGCATGTGGATCAGAG+AGG | 0.739195 | 6_1:+5458129 | Msa0870840:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAA+TGG | - | chr6_1:5454574-5454593 | None:intergenic | 0.0% |
| !! | TAATTGTTAATTTAGTTAAT+TGG | + | chr6_1:5454415-5454434 | Msa0870840:intron | 10.0% |
| !! | ATATATATATATATTCTAGT+AGG | + | chr6_1:5454636-5454655 | Msa0870840:intron | 10.0% |
| !! | TATATATATATATTCTAGTA+GGG | + | chr6_1:5454637-5454656 | Msa0870840:intron | 10.0% |
| !!! | GTTTTTATATTTATTCAATT+TGG | + | chr6_1:5455126-5455145 | Msa0870840:intron | 10.0% |
| !!! | TATAATAGTTTAAAATAAGA+TGG | + | chr6_1:5457364-5457383 | Msa0870840:intron | 10.0% |
| !!! | TGAATTTTATAAGATCATTT+AGG | - | chr6_1:5453009-5453028 | None:intergenic | 15.0% |
| !! | ATCTTATAAAATTCAAGAAA+GGG | + | chr6_1:5453014-5453033 | Msa0870840:CDS | 15.0% |
| !! | TAACAATTACATTATAGAAA+TGG | - | chr6_1:5454404-5454423 | None:intergenic | 15.0% |
| !! | TTAAAAATTACCAAACAATA+TGG | - | chr6_1:5454991-5455010 | None:intergenic | 15.0% |
| !! | ATGATAACTTTATAGTTAAA+AGG | - | chr6_1:5455570-5455589 | None:intergenic | 15.0% |
| !! | TAAAATTACTATAAGATATG+AGG | + | chr6_1:5455751-5455770 | Msa0870840:intron | 15.0% |
| !! | TTAGAAATAATAAAGTTAGT+AGG | + | chr6_1:5456172-5456191 | Msa0870840:intron | 15.0% |
| !! | AAAAATGAATAGCTTATTAA+AGG | + | chr6_1:5456827-5456846 | Msa0870840:intron | 15.0% |
| !!! | ATTGTTTTTTCAACAATATA+TGG | - | chr6_1:5457078-5457097 | None:intergenic | 15.0% |
| !! | AATAAGTATATGATTGAAAA+TGG | - | chr6_1:5457274-5457293 | None:intergenic | 15.0% |
| !!! | TTTGTACTTTTATCTTTTTA+TGG | + | chr6_1:5457559-5457578 | Msa0870840:intron | 15.0% |
| !! | GATCTTATAAAATTCAAGAA+AGG | + | chr6_1:5453013-5453032 | Msa0870840:CDS | 20.0% |
| !! | TCTTGAATTAACAATTGTTA+AGG | + | chr6_1:5453162-5453181 | Msa0870840:CDS | 20.0% |
| !! | AAGAAAAACATGTTAAAAAC+TGG | + | chr6_1:5453398-5453417 | Msa0870840:intron | 20.0% |
| !! | AGAAAAACATGTTAAAAACT+GGG | + | chr6_1:5453399-5453418 | Msa0870840:intron | 20.0% |
| !!! | TTAATTTTCCTAAATCATGT+AGG | + | chr6_1:5453983-5454002 | Msa0870840:intron | 20.0% |
| !! | TTAATTATCCAATTTGATTG+AGG | + | chr6_1:5454329-5454348 | Msa0870840:intron | 20.0% |
| !!! | ATACCTTTAATTTAAGTGTT+AGG | + | chr6_1:5455209-5455228 | Msa0870840:intron | 20.0% |
| !! | CATAAAAACATGGTAAATAT+AGG | + | chr6_1:5455694-5455713 | Msa0870840:intron | 20.0% |
| !!! | TGACCAAGAATTTTATTTAA+TGG | + | chr6_1:5455855-5455874 | Msa0870840:intron | 20.0% |
| !! | AAGCCATTAAATAAAATTCT+TGG | - | chr6_1:5455861-5455880 | None:intergenic | 20.0% |
| !!! | AAGAATTTTATTTAATGGCT+TGG | + | chr6_1:5455860-5455879 | Msa0870840:intron | 20.0% |
| !! | GATTAAAAAGCTTAAACATT+AGG | + | chr6_1:5455930-5455949 | Msa0870840:intron | 20.0% |
| !! | AGACAATAAAATACATGTTT+GGG | - | chr6_1:5456464-5456483 | None:intergenic | 20.0% |
| !! | AAGACAATAAAATACATGTT+TGG | - | chr6_1:5456465-5456484 | None:intergenic | 20.0% |
| !!! | TATTTTATTGTCTTCATCAA+TGG | + | chr6_1:5456471-5456490 | Msa0870840:intron | 20.0% |
| !!! | ATTTTATTGTCTTCATCAAT+GGG | + | chr6_1:5456472-5456491 | Msa0870840:intron | 20.0% |
| !!! | AATGGTTAATTGTTTCATTT+TGG | + | chr6_1:5456604-5456623 | Msa0870840:intron | 20.0% |
| !!! | GTTTACTATTTTAAGAATTG+TGG | + | chr6_1:5456719-5456738 | Msa0870840:intron | 20.0% |
| !! | TTTAAGAATTGTGGTTTAAT+AGG | + | chr6_1:5456728-5456747 | Msa0870840:intron | 20.0% |
| !! | CAGGACATATATAATATTAT+AGG | - | chr6_1:5457162-5457181 | None:intergenic | 20.0% |
| !! | TATGTATGATAAAAATTGTC+AGG | - | chr6_1:5457181-5457200 | None:intergenic | 20.0% |
| !! | GCATTTAATTATAGCATATT+TGG | + | chr6_1:5457656-5457675 | Msa0870840:intron | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | + | chr6_1:5458108-5458127 | Msa0870840:intron | 20.0% |
| !!! | AATTTTCACAACTAATTTTG+TGG | + | chr6_1:5458157-5458176 | Msa0870840:CDS | 20.0% |
| ! | ATCCAAGTAATAATTGGATT+AGG | + | chr6_1:5452894-5452913 | Msa0870840:CDS | 25.0% |
| ! | TACCTAATCCAATTATTACT+TGG | - | chr6_1:5452899-5452918 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | + | chr6_1:5453037-5453056 | Msa0870840:CDS | 25.0% |
| !!! | TTTTTAGAAAACGCTATTGT+TGG | + | chr6_1:5453474-5453493 | Msa0870840:intron | 25.0% |
| !!! | TTTTTTATTGGCTAGATAGT+TGG | - | chr6_1:5453595-5453614 | None:intergenic | 25.0% |
| !!! | GGGTCTCTATTTTTTTTTAT+TGG | - | chr6_1:5453607-5453626 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTTGTTTGCAAA+GGG | - | chr6_1:5453627-5453646 | None:intergenic | 25.0% |
| !!! | TCTTTTTTGTTTGTTTGCAA+AGG | - | chr6_1:5453628-5453647 | None:intergenic | 25.0% |
| ! | AAAATCTTCCTACATGATTT+AGG | - | chr6_1:5453994-5454013 | None:intergenic | 25.0% |
| !! | TAAATCATGTAGGAAGATTT+TGG | + | chr6_1:5453993-5454012 | Msa0870840:intron | 25.0% |
| !!! | TTTTCAACTTTTTAAGCGAT+TGG | + | chr6_1:5454301-5454320 | Msa0870840:intron | 25.0% |
| ! | ATACAAAACCTCAATCAAAT+TGG | - | chr6_1:5454340-5454359 | None:intergenic | 25.0% |
| ! | ACAACTTAATTAGATAGTAC+CGG | + | chr6_1:5454736-5454755 | Msa0870840:intron | 25.0% |
| ! | TATGTGACATATGAAGAATT+CGG | - | chr6_1:5454806-5454825 | None:intergenic | 25.0% |
| !! | TTTATGACTCTTGAAACTTT+TGG | + | chr6_1:5455096-5455115 | Msa0870840:intron | 25.0% |
| ! | TACCTTCTACTTTATATCTA+GGG | - | chr6_1:5455273-5455292 | None:intergenic | 25.0% |
| ! | TAGAAGGTAGAATATGATAT+AGG | + | chr6_1:5455284-5455303 | Msa0870840:intron | 25.0% |
| ! | AGAAGGTAGAATATGATATA+GGG | + | chr6_1:5455285-5455304 | Msa0870840:intron | 25.0% |
| ! | ACTGAAGCAAAATAAAAGTT+AGG | - | chr6_1:5455671-5455690 | None:intergenic | 25.0% |
| ! | CTTCAGTATTCATAAAAACA+TGG | + | chr6_1:5455684-5455703 | Msa0870840:intron | 25.0% |
| ! | AAAATACTGTCAATGTATGA+TGG | + | chr6_1:5456073-5456092 | Msa0870840:intron | 25.0% |
| ! | TGAAAACACATTATATGTCT+AGG | + | chr6_1:5456115-5456134 | Msa0870840:intron | 25.0% |
| ! | TAACACGAATAGTAAATGAA+AGG | + | chr6_1:5456269-5456288 | Msa0870840:intron | 25.0% |
| !! | TTTTGAATATGCCAAACTAT+CGG | + | chr6_1:5456294-5456313 | Msa0870840:intron | 25.0% |
| ! | AAGAATTGTGACATTGTTAT+TGG | + | chr6_1:5456403-5456422 | Msa0870840:intron | 25.0% |
| ! | GACAATAAAATACATGTTTG+GGG | - | chr6_1:5456463-5456482 | None:intergenic | 25.0% |
| ! | CTCATATAAAACAATGAGTT+AGG | + | chr6_1:5456511-5456530 | Msa0870840:intron | 25.0% |
| ! | ATATAAAACAATGAGTTAGG+AGG | + | chr6_1:5456514-5456533 | Msa0870840:intron | 25.0% |
| !!! | ACTCTTCATTTTAGTGAAAA+TGG | + | chr6_1:5456586-5456605 | Msa0870840:intron | 25.0% |
| ! | TAAACAAAAGAACAAAAGCT+TGG | - | chr6_1:5456704-5456723 | None:intergenic | 25.0% |
| ! | TGAATAGCTTATTAAAGGTA+TGG | + | chr6_1:5456832-5456851 | Msa0870840:intron | 25.0% |
| !! | GAATAGCTTATTAAAGGTAT+GGG | + | chr6_1:5456833-5456852 | Msa0870840:intron | 25.0% |
| !! | CTTTTTGAACTTATTCCTTT+TGG | + | chr6_1:5456869-5456888 | Msa0870840:intron | 25.0% |
| !!! | TTTTTTAGAGAAGTTCCAAA+AGG | - | chr6_1:5456887-5456906 | None:intergenic | 25.0% |
| ! | CAATAATGTTAGATTCAAAG+AGG | + | chr6_1:5457094-5457113 | Msa0870840:intron | 25.0% |
| ! | TACATATCTTGTTGCATAAT+TGG | + | chr6_1:5457195-5457214 | Msa0870840:intron | 25.0% |
| ! | ATTATTGCAATGTAGTTCAA+TGG | + | chr6_1:5457315-5457334 | Msa0870840:intron | 25.0% |
| ! | AGTTCAATGGTTATTAGAAT+TGG | + | chr6_1:5457328-5457347 | Msa0870840:intron | 25.0% |
| !! | TTTCCCAAATTAGTACTTTT+TGG | + | chr6_1:5457460-5457479 | Msa0870840:intron | 25.0% |
| ! | AAAATAAAGATGAAGATGAG+GGG | - | chr6_1:5457542-5457561 | None:intergenic | 25.0% |
| ! | CAAAATAAAGATGAAGATGA+GGG | - | chr6_1:5457543-5457562 | None:intergenic | 25.0% |
| ! | ACAAAATAAAGATGAAGATG+AGG | - | chr6_1:5457544-5457563 | None:intergenic | 25.0% |
| !! | ATTTTGTAGTAGTGAGAAAA+AGG | + | chr6_1:5457989-5458008 | Msa0870840:intron | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | - | chr6_1:5458050-5458069 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAAATGAAAGTA+AGG | + | chr6_1:5458067-5458086 | Msa0870840:intron | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | + | chr6_1:5458101-5458120 | Msa0870840:intron | 25.0% |
| !!! | TAAGGTTGATGAAAAATTAG+AGG | + | chr6_1:5458547-5458566 | Msa0870840:CDS | 25.0% |
| ! | AAAATTAGAGGAAAAAGTGA+AGG | + | chr6_1:5458559-5458578 | Msa0870840:CDS | 25.0% |
| TGAAAATGATTGTGTTCTTG+AGG | - | chr6_1:5452768-5452787 | None:intergenic | 30.0% | |
| ! | ATGTCTTTTATGGAAGGTTA+GGG | - | chr6_1:5452825-5452844 | None:intergenic | 30.0% |
| ! | ATTACTTGGATTGTTGGTTA+GGG | - | chr6_1:5452885-5452904 | None:intergenic | 30.0% |
| ! | TATTACTTGGATTGTTGGTT+AGG | - | chr6_1:5452886-5452905 | None:intergenic | 30.0% |
| CCAATTATTACTTGGATTGT+TGG | - | chr6_1:5452891-5452910 | None:intergenic | 30.0% | |
| CCAACAATCCAAGTAATAAT+TGG | + | chr6_1:5452888-5452907 | Msa0870840:CDS | 30.0% | |
| !!! | AAGTTTTGAAACACTTGCTT+TGG | + | chr6_1:5452961-5452980 | Msa0870840:CDS | 30.0% |
| !!! | AGGATCTCTTCTTTCTTTTT+TGG | - | chr6_1:5452989-5453008 | None:intergenic | 30.0% |
| GTATTATGCTAAAGTTGGAA+AGG | + | chr6_1:5453042-5453061 | Msa0870840:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | + | chr6_1:5453070-5453089 | Msa0870840:intron | 30.0% | |
| ! | GGATATCATAGTAGATTTTC+CGG | - | chr6_1:5453107-5453126 | None:intergenic | 30.0% |
| GCTATTAAAAGCCAAAATTG+TGG | - | chr6_1:5453298-5453317 | None:intergenic | 30.0% | |
| ! | TTTTCCAAAAACGCTAACAA+AGG | - | chr6_1:5453547-5453566 | None:intergenic | 30.0% |
| !!! | AAAAGAGATTTTGAGGTTGA+GGG | - | chr6_1:5453770-5453789 | None:intergenic | 30.0% |
| !!! | AAAAAGAGATTTTGAGGTTG+AGG | - | chr6_1:5453771-5453790 | None:intergenic | 30.0% |
| TTGATCTCAATCTTGAGAAT+GGG | - | chr6_1:5454070-5454089 | None:intergenic | 30.0% | |
| ATTGATCTCAATCTTGAGAA+TGG | - | chr6_1:5454071-5454090 | None:intergenic | 30.0% | |
| ATTCTCAAGATTGAGATCAA+TGG | + | chr6_1:5454070-5454089 | Msa0870840:intron | 30.0% | |
| ! | TTTTGTGTAGTTCACTATCA+TGG | + | chr6_1:5454171-5454190 | Msa0870840:intron | 30.0% |
| TTTGTGTAGTTCACTATCAT+GGG | + | chr6_1:5454172-5454191 | Msa0870840:intron | 30.0% | |
| TACTAAGTTTGACTCTAGAT+AGG | + | chr6_1:5454210-5454229 | Msa0870840:intron | 30.0% | |
| ACTAAGTTTGACTCTAGATA+GGG | + | chr6_1:5454211-5454230 | Msa0870840:intron | 30.0% | |
| AAAACAAAACCAATCGAAAC+AGG | - | chr6_1:5454274-5454293 | None:intergenic | 30.0% | |
| TTTCATCTCTTATGAGACAA+AGG | + | chr6_1:5454515-5454534 | Msa0870840:intron | 30.0% | |
| CAAAGGTAATGCAAGAATAT+AGG | + | chr6_1:5454532-5454551 | Msa0870840:intron | 30.0% | |
| ACTTGACTTAGTATGCATTA+CGG | - | chr6_1:5454844-5454863 | None:intergenic | 30.0% | |
| ! | TGACTATGATGTTGTTGTTA+AGG | + | chr6_1:5454875-5454894 | Msa0870840:intron | 30.0% |
| ! | GACTATGATGTTGTTGTTAA+GGG | + | chr6_1:5454876-5454895 | Msa0870840:intron | 30.0% |
| AAAGTAACATATGGAGGTAA+AGG | - | chr6_1:5454939-5454958 | None:intergenic | 30.0% | |
| TCAAGAAAAGTAACATATGG+AGG | - | chr6_1:5454945-5454964 | None:intergenic | 30.0% | |
| CCATCAAGAAAAGTAACATA+TGG | - | chr6_1:5454948-5454967 | None:intergenic | 30.0% | |
| !!! | CCATATGTTACTTTTCTTGA+TGG | + | chr6_1:5454945-5454964 | Msa0870840:intron | 30.0% |
| ACACACACATAAATGTGAAA+TGG | - | chr6_1:5455170-5455189 | None:intergenic | 30.0% | |
| GCTCCTAACACTTAAATTAA+AGG | - | chr6_1:5455215-5455234 | None:intergenic | 30.0% | |
| CTACCTTCTACTTTATATCT+AGG | - | chr6_1:5455274-5455293 | None:intergenic | 30.0% | |
| ACATGGTAAATATAGGTGAA+TGG | + | chr6_1:5455701-5455720 | Msa0870840:intron | 30.0% | |
| CATGGTAAATATAGGTGAAT+GGG | + | chr6_1:5455702-5455721 | Msa0870840:intron | 30.0% | |
| ATGGTAAATATAGGTGAATG+GGG | + | chr6_1:5455703-5455722 | Msa0870840:intron | 30.0% | |
| ! | GGTAAATAAGACAAAGGTAT+TGG | + | chr6_1:5455724-5455743 | Msa0870840:intron | 30.0% |
| TAATGCATGTATAGTTTACG+TGG | + | chr6_1:5455817-5455836 | Msa0870840:intron | 30.0% | |
| AGAAAAACTTTCAGATGTCA+TGG | + | chr6_1:5456006-5456025 | Msa0870840:intron | 30.0% | |
| GAAAACATCTTGTGTAGATA+AGG | + | chr6_1:5456042-5456061 | Msa0870840:intron | 30.0% | |
| ACATTATATGTCTAGGCTTT+GGG | + | chr6_1:5456122-5456141 | Msa0870840:intron | 30.0% | |
| AACCATGATTAAATCCTTCA+TGG | + | chr6_1:5456241-5456260 | Msa0870840:intron | 30.0% | |
| AACCATGAAGGATTTAATCA+TGG | - | chr6_1:5456246-5456265 | None:intergenic | 30.0% | |
| TTTGAATATGCCAAACTATC+GGG | + | chr6_1:5456295-5456314 | Msa0870840:intron | 30.0% | |
| TGACATAGAATTAGTGACAT+TGG | + | chr6_1:5456329-5456348 | Msa0870840:intron | 30.0% | |
| ! | ATTAGTGACATTGGTGATAT+TGG | + | chr6_1:5456338-5456357 | Msa0870840:intron | 30.0% |
| ! | ATGAGTTAGGAGGATTTTTA+AGG | + | chr6_1:5456524-5456543 | Msa0870840:intron | 30.0% |
| AAAGAATGCTATAGTAGCTA+TGG | - | chr6_1:5456645-5456664 | None:intergenic | 30.0% | |
| !! | TAATGATTTGCCTCAGATTT+TGG | + | chr6_1:5457412-5457431 | Msa0870840:intron | 30.0% |
| !! | CCTCCAAAAAGTACTAATTT+GGG | - | chr6_1:5457466-5457485 | None:intergenic | 30.0% |
| AAATAAAGATGAAGATGAGG+GGG | - | chr6_1:5457541-5457560 | None:intergenic | 30.0% | |
| !! | AAACCCTTATTTGAGTTGAA+AGG | + | chr6_1:5457739-5457758 | Msa0870840:intron | 30.0% |
| TAGCCTTTCAACTCAAATAA+GGG | - | chr6_1:5457745-5457764 | None:intergenic | 30.0% | |
| !! | TGTTGCTATTTAATAGCGTT+TGG | + | chr6_1:5457869-5457888 | Msa0870840:intron | 30.0% |
| ! | CCAAAATGAGTGCTATTAAA+GGG | + | chr6_1:5457963-5457982 | Msa0870840:intron | 30.0% |
| ! | CAAAATGAGTGCTATTAAAG+GGG | + | chr6_1:5457964-5457983 | Msa0870840:intron | 30.0% |
| ! | AAAATGAGTGCTATTAAAGG+GGG | + | chr6_1:5457965-5457984 | Msa0870840:intron | 30.0% |
| TGATGAGAATGATGAAAAGA+AGG | + | chr6_1:5458022-5458041 | Msa0870840:intron | 30.0% | |
| TGAAAGTAAGGTAACTCTTT+CGG | + | chr6_1:5458079-5458098 | Msa0870840:intron | 30.0% | |
| TCCAGTTATTGAAAAGTTGT+TGG | + | chr6_1:5458310-5458329 | Msa0870840:CDS | 30.0% | |
| CCAGTTATTGAAAAGTTGTT+GGG | + | chr6_1:5458311-5458330 | Msa0870840:CDS | 30.0% | |
| ! | AAATCTTCAGTGATTGACTT+TGG | - | chr6_1:5458380-5458399 | None:intergenic | 30.0% |
| GAATTTGATTCAATCTCTTG+AGG | + | chr6_1:5458415-5458434 | Msa0870840:CDS | 30.0% | |
| GAAACAAGAATTAACTCAAG+AGG | + | chr6_1:5458514-5458533 | Msa0870840:CDS | 30.0% | |
| ATTAACTCAAGAGGAAGAAA+AGG | + | chr6_1:5458523-5458542 | Msa0870840:CDS | 30.0% | |
| ! | AGTTCAATGGTGTCAAAGTT+TGG | + | chr6_1:5452723-5452742 | Msa0870840:CDS | 35.0% |
| ! | ATCTTTTCTCATCTGACGTA+GGG | - | chr6_1:5452796-5452815 | None:intergenic | 35.0% |
| ! | AATCTTTTCTCATCTGACGT+AGG | - | chr6_1:5452797-5452816 | None:intergenic | 35.0% |
| ! | GATGTCTTTTATGGAAGGTT+AGG | - | chr6_1:5452826-5452845 | None:intergenic | 35.0% |
| ! | ATCACGATGTCTTTTATGGA+AGG | - | chr6_1:5452831-5452850 | None:intergenic | 35.0% |
| ! | TGAGATCACGATGTCTTTTA+TGG | - | chr6_1:5452835-5452854 | None:intergenic | 35.0% |
| ! | TTAGGTATAGAAGCACAAAG+TGG | + | chr6_1:5452912-5452931 | Msa0870840:intron | 35.0% |
| GTTCATGAAATTCGCAATAG+CGG | - | chr6_1:5453128-5453147 | None:intergenic | 35.0% | |
| ! | AGAAGACACTACCACAATTT+TGG | + | chr6_1:5453284-5453303 | Msa0870840:intron | 35.0% |
| TTAGAAAACGCTATTGTTGG+AGG | + | chr6_1:5453477-5453496 | Msa0870840:intron | 35.0% | |
| TAGAAAACGCTATTGTTGGA+GGG | + | chr6_1:5453478-5453497 | Msa0870840:intron | 35.0% | |
| ! | TACACCTTTGTTAGCGTTTT+TGG | + | chr6_1:5453540-5453559 | Msa0870840:intron | 35.0% |
| AACAGTGATTCCATATCTCT+AGG | + | chr6_1:5453683-5453702 | Msa0870840:intron | 35.0% | |
| AAAGAGAGAACCTAGAGATA+TGG | - | chr6_1:5453696-5453715 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTTCACTTTCAGA+TGG | + | chr6_1:5453707-5453726 | Msa0870840:intron | 35.0% |
| ! | TGGTGGAAAAAGAGATTTTG+AGG | - | chr6_1:5453777-5453796 | None:intergenic | 35.0% |
| !! | GAAATTAGAGTTCTGAACGA+TGG | - | chr6_1:5453819-5453838 | None:intergenic | 35.0% |
| CAAAGAGAAGTAGAGGTTTA+GGG | - | chr6_1:5453844-5453863 | None:intergenic | 35.0% | |
| ACAAAGAGAAGTAGAGGTTT+AGG | - | chr6_1:5453845-5453864 | None:intergenic | 35.0% | |
| TACTTCTCTTTGTTCTCACT+CGG | + | chr6_1:5453852-5453871 | Msa0870840:intron | 35.0% | |
| CTAAGTTTGACTCTAGATAG+GGG | + | chr6_1:5454212-5454231 | Msa0870840:intron | 35.0% | |
| ACTTCTTTCAATTGTAGGCT+TGG | + | chr6_1:5454236-5454255 | Msa0870840:intron | 35.0% | |
| GGGAAATATTTGTGACTTGA+AGG | + | chr6_1:5454657-5454676 | Msa0870840:intron | 35.0% | |
| TCATGTAAGAATGTCTCTAG+TGG | + | chr6_1:5454681-5454700 | Msa0870840:intron | 35.0% | |
| ATGAAGAATTCGGTACATAC+AGG | - | chr6_1:5454796-5454815 | None:intergenic | 35.0% | |
| TTAGTATGCATTACGGATTC+GGG | - | chr6_1:5454837-5454856 | None:intergenic | 35.0% | |
| CTTAGTATGCATTACGGATT+CGG | - | chr6_1:5454838-5454857 | None:intergenic | 35.0% | |
| GTTCTATGAGCCATATTGTT+TGG | + | chr6_1:5454978-5454997 | Msa0870840:intron | 35.0% | |
| ! | GAAAATTTGAGACGAACACT+AGG | + | chr6_1:5455041-5455060 | Msa0870840:intron | 35.0% |
| !! | TGTGAAATGGAAAGCATCTA+AGG | - | chr6_1:5455157-5455176 | None:intergenic | 35.0% |
| GGTAGAATATGATATAGGGT+TGG | + | chr6_1:5455289-5455308 | Msa0870840:intron | 35.0% | |
| ATATGAAATCTTAAGCCCCT+TGG | + | chr6_1:5455512-5455531 | Msa0870840:intron | 35.0% | |
| CAAAATGAAGACCATAGAGA+TGG | - | chr6_1:5455626-5455645 | None:intergenic | 35.0% | |
| GAATGGGGTAAATAAGACAA+AGG | + | chr6_1:5455718-5455737 | Msa0870840:intron | 35.0% | |
| CACATTATATGTCTAGGCTT+TGG | + | chr6_1:5456121-5456140 | Msa0870840:intron | 35.0% | |
| !! | TTCGTGTTACTTAACCATGA+AGG | - | chr6_1:5456258-5456277 | None:intergenic | 35.0% |
| TGATTGTGACATATTACCCT+GGG | - | chr6_1:5456790-5456809 | None:intergenic | 35.0% | |
| ATGATTGTGACATATTACCC+TGG | - | chr6_1:5456791-5456810 | None:intergenic | 35.0% | |
| !! | TTAATAGCTTGCTGTCAACT+TGG | + | chr6_1:5456914-5456933 | Msa0870840:intron | 35.0% |
| AGATTGATGAGCATATTCAG+AGG | + | chr6_1:5457041-5457060 | Msa0870840:intron | 35.0% | |
| GATTGATGAGCATATTCAGA+GGG | + | chr6_1:5457042-5457061 | Msa0870840:intron | 35.0% | |
| !!! | GTGTTGTTTTGCAGAACAAT+AGG | + | chr6_1:5457233-5457252 | Msa0870840:intron | 35.0% |
| ! | ATCTGAGGCAAATCATTACA+AGG | - | chr6_1:5457410-5457429 | None:intergenic | 35.0% |
| !! | AGATTTTGGCAGAATTTGCT+AGG | + | chr6_1:5457426-5457445 | Msa0870840:intron | 35.0% |
| !! | CCCAAATTAGTACTTTTTGG+AGG | + | chr6_1:5457463-5457482 | Msa0870840:intron | 35.0% |
| !! | GCCTCCAAAAAGTACTAATT+TGG | - | chr6_1:5457467-5457486 | None:intergenic | 35.0% |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | + | chr6_1:5457487-5457506 | Msa0870840:intron | 35.0% |
| ! | TTGTTGTTGTTGTTGTTGGA+GGG | + | chr6_1:5457500-5457519 | Msa0870840:intron | 35.0% |
| AATAAAGATGAAGATGAGGG+GGG | - | chr6_1:5457540-5457559 | None:intergenic | 35.0% | |
| GTAGCCTTTCAACTCAAATA+AGG | - | chr6_1:5457746-5457765 | None:intergenic | 35.0% | |
| ! | GCCAAAATGAGTGCTATTAA+AGG | + | chr6_1:5457962-5457981 | Msa0870840:intron | 35.0% |
| ! | CCCTTTAATAGCACTCATTT+TGG | - | chr6_1:5457966-5457985 | None:intergenic | 35.0% |
| GAAAGTAAGGTAACTCTTTC+GGG | + | chr6_1:5458080-5458099 | Msa0870840:intron | 35.0% | |
| TTGTAGCTATCAAGCTTTCA+AGG | + | chr6_1:5458241-5458260 | Msa0870840:CDS | 35.0% | |
| ! | CCCAACAACTTTTCAATAAC+TGG | - | chr6_1:5458314-5458333 | None:intergenic | 35.0% |
| TCTTGAGGAAGCAAAGAAAA+AGG | + | chr6_1:5458430-5458449 | Msa0870840:CDS | 35.0% | |
| TCAAGAGGAAGAAAAGGTTA+AGG | + | chr6_1:5458529-5458548 | Msa0870840:CDS | 35.0% | |
| TGAACTCATCTGTGATCTCT+TGG | - | chr6_1:5452709-5452728 | None:intergenic | 40.0% | |
| GAGATCACAGATGAGTTCAA+TGG | + | chr6_1:5452710-5452729 | Msa0870840:CDS | 40.0% | |
| ! | TCAATGGTGTCAAAGTTTGG+TGG | + | chr6_1:5452726-5452745 | Msa0870840:CDS | 40.0% |
| ! | GATTGTTGGTTAGGGTTAAG+AGG | - | chr6_1:5452877-5452896 | None:intergenic | 40.0% |
| GCAAGTGTTTCAAAACTTGC+AGG | - | chr6_1:5452959-5452978 | None:intergenic | 40.0% | |
| ATGCTAAAGTTGGAAAGGCT+TGG | + | chr6_1:5453047-5453066 | Msa0870840:CDS | 40.0% | |
| TATCTACTTTATGGACCTCC+AGG | + | chr6_1:5453079-5453098 | Msa0870840:intron | 40.0% | |
| ! | ATAGTAGATTTTCCGGTTCC+TGG | - | chr6_1:5453100-5453119 | None:intergenic | 40.0% |
| CACAAGTTTAATAGCGCTTC+TGG | + | chr6_1:5453317-5453336 | Msa0870840:intron | 40.0% | |
| AGAAAACGCTATTGTTGGAG+GGG | + | chr6_1:5453479-5453498 | Msa0870840:intron | 40.0% | |
| GAACGATGGTGTGAGAATTA+GGG | - | chr6_1:5453805-5453824 | None:intergenic | 40.0% | |
| TGAACGATGGTGTGAGAATT+AGG | - | chr6_1:5453806-5453825 | None:intergenic | 40.0% | |
| GTGAGAACAAAGAGAAGTAG+AGG | - | chr6_1:5453851-5453870 | None:intergenic | 40.0% | |
| GTAAATGATACCCGAAAGCT+CGG | + | chr6_1:5453874-5453893 | Msa0870840:intron | 40.0% | |
| AGAAAACGATGGTAGATCGA+TGG | - | chr6_1:5453942-5453961 | None:intergenic | 40.0% | |
| TCATGAATCGCAGAAAACGA+TGG | - | chr6_1:5453953-5453972 | None:intergenic | 40.0% | |
| GGGGAACTTCTTTCAATTGT+AGG | + | chr6_1:5454231-5454250 | Msa0870840:intron | 40.0% | |
| TTCAATTGTAGGCTTGGACA+AGG | + | chr6_1:5454242-5454261 | Msa0870840:intron | 40.0% | |
| CATACAGGCATATAGAGCTT+CGG | - | chr6_1:5454781-5454800 | None:intergenic | 40.0% | |
| TTGCGAGTTATGTGACTATG+AGG | + | chr6_1:5454863-5454882 | Msa0870840:intron | 40.0% | |
| ! | CTACTTTATATCTAGGGCCA+AGG | - | chr6_1:5455267-5455286 | None:intergenic | 40.0% |
| GGCCCTAGATATAAAGTAGA+AGG | + | chr6_1:5455268-5455287 | Msa0870840:intron | 40.0% | |
| !!! | GTTCTGTTTTTGGGCAAAGT+TGG | - | chr6_1:5455390-5455409 | None:intergenic | 40.0% |
| ACTTTGCCCAAAAACAGAAC+TGG | + | chr6_1:5455390-5455409 | Msa0870840:intron | 40.0% | |
| !! | TCCTTGCCAGTTCTGTTTTT+GGG | - | chr6_1:5455399-5455418 | None:intergenic | 40.0% |
| !! | TTTTAGAGGGGGAGATAGTT+TGG | - | chr6_1:5455422-5455441 | None:intergenic | 40.0% |
| !!! | AGGTAGTTTTGACTCTAGGA+GGG | - | chr6_1:5455447-5455466 | None:intergenic | 40.0% |
| !!! | TCTGAGGTAGTTTTGACTCT+AGG | - | chr6_1:5455451-5455470 | None:intergenic | 40.0% |
| AGAGTCAAAACTACCTCAGA+AGG | + | chr6_1:5455451-5455470 | Msa0870840:intron | 40.0% | |
| TGAGCAGTGTTAGAATCCAA+GGG | - | chr6_1:5455481-5455500 | None:intergenic | 40.0% | |
| ATGAGCAGTGTTAGAATCCA+AGG | - | chr6_1:5455482-5455501 | None:intergenic | 40.0% | |
| GAACAACATGACCATCTCTA+TGG | + | chr6_1:5455612-5455631 | Msa0870840:intron | 40.0% | |
| TTTACGTGGCACAACTCTAA+GGG | + | chr6_1:5455831-5455850 | Msa0870840:intron | 40.0% | |
| ACAAATGCTACCCGATAGTT+TGG | - | chr6_1:5456308-5456327 | None:intergenic | 40.0% | |
| AAAAGCCACTTGTGACATTG+TGG | - | chr6_1:5456368-5456387 | None:intergenic | 40.0% | |
| TCTTCATCAATGGGTGATGT+TGG | + | chr6_1:5456481-5456500 | Msa0870840:intron | 40.0% | |
| ! | TGTTTTGCAGAACAATAGGC+TGG | + | chr6_1:5457237-5457256 | Msa0870840:intron | 40.0% |
| GCAAATTCTGCCAAAATCTG+AGG | - | chr6_1:5457425-5457444 | None:intergenic | 40.0% | |
| !! | GAATTTGCTAGGAACAAGAC+TGG | + | chr6_1:5457437-5457456 | Msa0870840:intron | 40.0% |
| ! | GTTGTTGTTGTTGTTGTTGG+AGG | + | chr6_1:5457499-5457518 | Msa0870840:intron | 40.0% |
| !! | TTGTTGTTGTTGGAGGGTTT+TGG | + | chr6_1:5457506-5457525 | Msa0870840:intron | 40.0% |
| !! | CGTTTGGAAAGCGCTATTAT+AGG | + | chr6_1:5457885-5457904 | Msa0870840:intron | 40.0% |
| AACTTGATCCTGCTCTCATA+AGG | + | chr6_1:5458183-5458202 | Msa0870840:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+CGG | - | chr6_1:5458353-5458372 | None:intergenic | 40.0% | |
| GGAAGCAAAGAAAAAGGATG+AGG | + | chr6_1:5458436-5458455 | Msa0870840:CDS | 40.0% | |
| AGCAAAGAAAAAGGATGAGG+AGG | + | chr6_1:5458439-5458458 | Msa0870840:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | + | chr6_1:5458566-5458585 | Msa0870840:CDS | 40.0% | |
| GGTTAAGAGGTAGTGATGAG+AGG | - | chr6_1:5452864-5452883 | None:intergenic | 45.0% | |
| GATTGTTCTCTCGATCTCAC+CGG | + | chr6_1:5453253-5453272 | Msa0870840:intron | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | + | chr6_1:5453254-5453273 | Msa0870840:intron | 45.0% | |
| TAGTGTCTTCTTCCTTTGCC+CGG | - | chr6_1:5453275-5453294 | None:intergenic | 45.0% | |
| GAAAACGCTATTGTTGGAGG+GGG | + | chr6_1:5453480-5453499 | Msa0870840:intron | 45.0% | |
| TGAGAATTAGGGTACGATGG+TGG | - | chr6_1:5453794-5453813 | None:intergenic | 45.0% | |
| GTGTGAGAATTAGGGTACGA+TGG | - | chr6_1:5453797-5453816 | None:intergenic | 45.0% | |
| GTAGATCGATGGTAGATCTG+GGG | - | chr6_1:5453931-5453950 | None:intergenic | 45.0% | |
| GGTAGATCGATGGTAGATCT+GGG | - | chr6_1:5453932-5453951 | None:intergenic | 45.0% | |
| TGGTAGATCGATGGTAGATC+TGG | - | chr6_1:5453933-5453952 | None:intergenic | 45.0% | |
| !!! | GGAAGATTTTGGAATGCCAG+TGG | + | chr6_1:5454004-5454023 | Msa0870840:intron | 45.0% |
| CTGGAAGATCGCCATTCATT+TGG | - | chr6_1:5454034-5454053 | None:intergenic | 45.0% | |
| CTTGAGAATGGGATTATCGC+CGG | - | chr6_1:5454059-5454078 | None:intergenic | 45.0% | |
| GTTCACTATCATGGGACGTT+TGG | + | chr6_1:5454180-5454199 | Msa0870840:intron | 45.0% | |
| ATCATGGGACGTTTGGTTGA+TGG | + | chr6_1:5454187-5454206 | Msa0870840:intron | 45.0% | |
| ! | GTCCTTGCCAGTTCTGTTTT+TGG | - | chr6_1:5455400-5455419 | None:intergenic | 45.0% |
| !! | TCTAGGAGGGGTTTTTAGAG+GGG | - | chr6_1:5455434-5455453 | None:intergenic | 45.0% |
| !! | CTCTAGGAGGGGTTTTTAGA+GGG | - | chr6_1:5455435-5455454 | None:intergenic | 45.0% |
| !! | ACTCTAGGAGGGGTTTTTAG+AGG | - | chr6_1:5455436-5455455 | None:intergenic | 45.0% |
| !!! | GGTAGTTTTGACTCTAGGAG+GGG | - | chr6_1:5455446-5455465 | None:intergenic | 45.0% |
| !!! | GAGGTAGTTTTGACTCTAGG+AGG | - | chr6_1:5455448-5455467 | None:intergenic | 45.0% |
| GAGCAGTGTTAGAATCCAAG+GGG | - | chr6_1:5455480-5455499 | None:intergenic | 45.0% | |
| TCCTCAAGGTGAGAATCCAA+GGG | - | chr6_1:5455531-5455550 | None:intergenic | 45.0% | |
| TACTCAGCATGAAGTCCTCA+AGG | - | chr6_1:5455545-5455564 | None:intergenic | 45.0% | |
| GTTTACGTGGCACAACTCTA+AGG | + | chr6_1:5455830-5455849 | Msa0870840:intron | 45.0% | |
| !! | TAGGCTTTGGGTTTATGCGT+TGG | + | chr6_1:5456134-5456153 | Msa0870840:intron | 45.0% |
| GCACTTGGGTGACATAGAAT+TGG | - | chr6_1:5456438-5456457 | None:intergenic | 45.0% | |
| ! | ACATGTTTGGGGTAGCACTT+GGG | - | chr6_1:5456452-5456471 | None:intergenic | 45.0% |
| ! | TACATGTTTGGGGTAGCACT+TGG | - | chr6_1:5456453-5456472 | None:intergenic | 45.0% |
| AGAATGACCCACTCGATCAA+GGG | - | chr6_1:5457002-5457021 | None:intergenic | 45.0% | |
| TAGAATGACCCACTCGATCA+AGG | - | chr6_1:5457003-5457022 | None:intergenic | 45.0% | |
| TGATCGAGTGGGTCATTCTA+TGG | + | chr6_1:5457003-5457022 | Msa0870840:intron | 45.0% | |
| ! | AGGCTCCTGACCTTTTATAG+CGG | + | chr6_1:5457905-5457924 | Msa0870840:intron | 45.0% |
| AAGAAAGCCCCCGCTATAAA+AGG | - | chr6_1:5457918-5457937 | None:intergenic | 45.0% | |
| GATGGAATTTGGTCAGCATG+TGG | + | chr6_1:5458119-5458138 | Msa0870840:intron | 45.0% | |
| TTGATCCTGCTCTCATAAGG+AGG | + | chr6_1:5458186-5458205 | Msa0870840:CDS | 45.0% | |
| TGATCCTGCTCTCATAAGGA+GGG | + | chr6_1:5458187-5458206 | Msa0870840:CDS | 45.0% | |
| GGGAGAGACTAATATGTCAC+CGG | + | chr6_1:5458331-5458350 | Msa0870840:CDS | 45.0% | |
| !!! | TTTTTATATTTATTCAATTT+GGG | + | chr6_1:5455127-5455146 | Msa0870840:intron | 5.0% |
| GTTGGAAAGGCTTGGAAACG+TGG | + | chr6_1:5453055-5453074 | Msa0870840:CDS | 50.0% | |
| CTTTATGGACCTCCAGGAAC+CGG | + | chr6_1:5453085-5453104 | Msa0870840:intron | 50.0% | |
| ! | GTAGATTTTCCGGTTCCTGG+AGG | - | chr6_1:5453097-5453116 | None:intergenic | 50.0% |
| GCGCTATTGCACAGCTTTCT+AGG | + | chr6_1:5453567-5453586 | Msa0870840:intron | 50.0% | |
| ATGATACCCGAAAGCTCGGT+CGG | + | chr6_1:5453878-5453897 | Msa0870840:intron | 50.0% | |
| CCATTCATTTGGTCAGCCAC+TGG | - | chr6_1:5454023-5454042 | None:intergenic | 50.0% | |
| CCAGTGGCTGACCAAATGAA+TGG | + | chr6_1:5454020-5454039 | Msa0870840:intron | 50.0% | |
| AGGTGAGTGCCTGTTTCGAT+TGG | + | chr6_1:5454262-5454281 | Msa0870840:intron | 50.0% | |
| TATAGAGCTTCGGTACGCGT+CGG | - | chr6_1:5454771-5454790 | None:intergenic | 50.0% | |
| TTACCTGCCACACAACACCT+TGG | + | chr6_1:5455247-5455266 | Msa0870840:intron | 50.0% | |
| GCCCAAAAACAGAACTGGCA+AGG | + | chr6_1:5455395-5455414 | Msa0870840:intron | 50.0% | |
| !! | CTAGGAGGGGTTTTTAGAGG+GGG | - | chr6_1:5455433-5455452 | None:intergenic | 50.0% |
| CCTCAAGGTGAGAATCCAAG+GGG | - | chr6_1:5455530-5455549 | None:intergenic | 50.0% | |
| GTCCTCAAGGTGAGAATCCA+AGG | - | chr6_1:5455532-5455551 | None:intergenic | 50.0% | |
| GCCAACCACAATGTCACAAG+TGG | + | chr6_1:5456360-5456379 | Msa0870840:intron | 50.0% | |
| GCCACTTGTGACATTGTGGT+TGG | - | chr6_1:5456364-5456383 | None:intergenic | 50.0% | |
| TTCTGCTACCCTTGATCGAG+TGG | + | chr6_1:5456991-5457010 | Msa0870840:intron | 50.0% | |
| TCTGCTACCCTTGATCGAGT+GGG | + | chr6_1:5456992-5457011 | Msa0870840:intron | 50.0% | |
| ! | GGCTCCTGACCTTTTATAGC+GGG | + | chr6_1:5457906-5457925 | Msa0870840:intron | 50.0% |
| ! | GCTCCTGACCTTTTATAGCG+GGG | + | chr6_1:5457907-5457926 | Msa0870840:intron | 50.0% |
| ! | CTCCTGACCTTTTATAGCGG+GGG | + | chr6_1:5457908-5457927 | Msa0870840:intron | 50.0% |
| GATCCTGCTCTCATAAGGAG+GGG | + | chr6_1:5458188-5458207 | Msa0870840:CDS | 50.0% | |
| TCTCATAAGGAGGGGACGAA+TGG | + | chr6_1:5458196-5458215 | Msa0870840:CDS | 50.0% | |
| ACGAGTTCCGACCGAGCTTT+CGG | - | chr6_1:5453888-5453907 | None:intergenic | 55.0% | |
| ! | TAGATCTGGGGTTCTGGCAG+AGG | - | chr6_1:5453919-5453938 | None:intergenic | 55.0% |
| ! | CGATGGTAGATCTGGGGTTC+TGG | - | chr6_1:5453925-5453944 | None:intergenic | 55.0% |
| GAATGGCGATCTTCCAGCAC+CGG | + | chr6_1:5454037-5454056 | Msa0870840:intron | 55.0% | |
| AATGGGATTATCGCCGGTGC+TGG | - | chr6_1:5454053-5454072 | None:intergenic | 55.0% | |
| !! | TACGCGTCGGTTCGTAGTAC+CGG | - | chr6_1:5454758-5454777 | None:intergenic | 55.0% |
| !! | TCTAGGGCCAAGGTGTTGTG+TGG | - | chr6_1:5455257-5455276 | None:intergenic | 55.0% |
| TACCTCAGAAGGCAACCCCT+TGG | + | chr6_1:5455462-5455481 | Msa0870840:intron | 55.0% | |
| ATCCAAGGGGTTGCCTTCTG+AGG | - | chr6_1:5455467-5455486 | None:intergenic | 55.0% | |
| CCCCTTGGATTCTCACCTTG+AGG | + | chr6_1:5455527-5455546 | Msa0870840:intron | 55.0% | |
| CATATTACCCTGGGCTGCTG+TGG | - | chr6_1:5456781-5456800 | None:intergenic | 55.0% | |
| AGCCCCCGCTATAAAAGGTC+AGG | - | chr6_1:5457913-5457932 | None:intergenic | 55.0% | |
| GGTCAGCATGTGGATCAGAG+AGG | + | chr6_1:5458129-5458148 | Msa0870840:intron | 55.0% | |
| AGACGAGCAAGCTCAGCTCA+AGG | + | chr6_1:5458481-5458500 | Msa0870840:CDS | 55.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | + | chr6_1:5453260-5453279 | Msa0870840:intron | 60.0% | |
| CGAGTTCCGACCGAGCTTTC+GGG | - | chr6_1:5453887-5453906 | None:intergenic | 60.0% | |
| TTGCTTGTCCACAGCAGCCC+AGG | + | chr6_1:5456770-5456789 | Msa0870840:intron | 60.0% | |
| TGCTTGTCCACAGCAGCCCA+GGG | + | chr6_1:5456771-5456790 | Msa0870840:intron | 60.0% | |
| CGTCCCCTCCTTATGAGAGC+AGG | - | chr6_1:5458194-5458213 | None:intergenic | 60.0% | |
| !! | GGGCCAAGGTGTTGTGTGGC+AGG | - | chr6_1:5455253-5455272 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 5452695 | 5458601 | 5452695 | ID=Msa0870840;Name=Msa0870840 |
| chr6_1 | mRNA | 5452695 | 5458601 | 5452695 | ID=Msa0870840-mRNA-1;Parent=Msa0870840;Name=Msa0870840-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|4|0|321 |
| chr6_1 | exon | 5452695 | 5452915 | 5452695 | ID=Msa0870840-mRNA-1:exon:1745;Parent=Msa0870840-mRNA-1 |
| chr6_1 | exon | 5452922 | 5453076 | 5452922 | ID=Msa0870840-mRNA-1:exon:1746;Parent=Msa0870840-mRNA-1 |
| chr6_1 | exon | 5453101 | 5453223 | 5453101 | ID=Msa0870840-mRNA-1:exon:1747;Parent=Msa0870840-mRNA-1 |
| chr6_1 | exon | 5458135 | 5458601 | 5458135 | ID=Msa0870840-mRNA-1:exon:1748;Parent=Msa0870840-mRNA-1 |
| chr6_1 | CDS | 5452695 | 5452915 | 5452695 | ID=Msa0870840-mRNA-1:cds;Parent=Msa0870840-mRNA-1 |
| chr6_1 | CDS | 5452922 | 5453076 | 5452922 | ID=Msa0870840-mRNA-1:cds;Parent=Msa0870840-mRNA-1 |
| chr6_1 | CDS | 5453101 | 5453223 | 5453101 | ID=Msa0870840-mRNA-1:cds;Parent=Msa0870840-mRNA-1 |
| chr6_1 | CDS | 5458135 | 5458601 | 5458135 | ID=Msa0870840-mRNA-1:cds;Parent=Msa0870840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
