AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0983160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983160 MtrunA17_MTg0491381 94.340 212 2 2 111 312 1 212 3.61e-142 407
Msa0983160 MtrunA17_Chr6g0457311 93.158 190 3 2 133 312 258 447 9.17e-120 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983160 ATMG00180.1 81.865 193 25 2 130 312 254 446 2.39e-103 316

Find 159 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCGAAAATAATAATTTA+TGG 0.188271 6_4:-26309416 Msa0983160:CDS
CTGTTAGTGGACAGAGCTTC+TGG 0.208328 6_4:-26308632 Msa0983160:CDS
TATGAGGCCGGAAAGTTTAT+TGG 0.241442 6_4:+26309483 None:intergenic
AATAAAAGGCAGTTTAATTA+TGG 0.257005 6_4:+26309257 None:intergenic
GGTATACCAGCCGCCTGTTC+TGG 0.261255 6_4:+26309281 None:intergenic
CCGCCCCGACCGGCAGCTGC+TGG 0.271520 6_4:-26309838 Msa0983160:CDS
TCAGCGATTGGCATTGGTTT+TGG 0.278134 6_4:+26308656 None:intergenic
TTCTATGCCGACCCCGGCCC+GGG 0.278863 6_4:+26310176 None:intergenic
CCTGTTGCCAATAAACTTTC+CGG 0.284972 6_4:-26309490 Msa0983160:CDS
GGCTTTGCCAACACAACATT+AGG 0.291533 6_4:+26310140 None:intergenic
GAAGCATATCTATCCGTAAA+TGG 0.301221 6_4:+26309321 None:intergenic
GAGAGGCATTCTTCAACTTC+TGG 0.301504 6_4:+26308194 None:intergenic
GCAATCCATTCTTTCATTCA+TGG 0.301920 6_4:-26308609 Msa0983160:CDS
CAGCAGCTGCCGGTCGGGGC+GGG 0.304794 6_4:+26309839 None:intergenic
GCCGTGAGCGCGGTGGGAAC+GGG 0.316107 6_4:-26310216 Msa0983160:CDS
TCCAACGCAACTTATCCTTT+TGG 0.321802 6_4:+26309169 None:intergenic
TGAAATTAACAATAATAAAT+CGG 0.322581 6_4:-26308218 Msa0983160:CDS
GGCCGTGAGCGCGGTGGGAA+CGG 0.322985 6_4:-26310217 Msa0983160:CDS
TCTCTCAGTGTGGTCAGCAC+TGG 0.333171 6_4:+26310420 None:intergenic
AAGCCAACTTCTTGGGTTGC+GGG 0.342786 6_4:-26310122 Msa0983160:CDS
TGTTGGCAAAGCCAACTTCT+TGG 0.342955 6_4:-26310130 Msa0983160:CDS
ACATGAGGCGATCGTTCGTT+AGG 0.352912 6_4:+26309541 None:intergenic
AGACCCAGCAGCTGCCGGTC+GGG 0.354277 6_4:+26309834 None:intergenic
CCCACTTCTCATTCCATTTG+TGG 0.355708 6_4:-26309588 Msa0983160:CDS
ATTACTGCTGGGGTGGGGCT+CGG 0.356446 6_4:+26309732 None:intergenic
GTTCACTCAACGATTGCCTT+TGG 0.367519 6_4:-26309673 Msa0983160:CDS
GAGCCAGAGTCCGCCTTAGA+AGG 0.372563 6_4:+26308148 None:intergenic
CTCTCAGTGTGGTCAGCACT+GGG 0.376688 6_4:+26310421 None:intergenic
CAGCAGTAATGGTGCGGCTT+AGG 0.383155 6_4:-26309719 Msa0983160:CDS
GATCATCAAATTCCCACAAA+TGG 0.389159 6_4:+26309575 None:intergenic
TTTGGGTTCCGAACTCCATA+TGG 0.390141 6_4:-26309655 Msa0983160:CDS
TATACATACAAATCCATTTA+CGG 0.398392 6_4:-26309334 Msa0983160:CDS
TTCACTCAACGATTGCCTTT+GGG 0.400692 6_4:-26309672 Msa0983160:CDS
CTTAACGCCACTTCGCCAAC+TGG 0.402672 6_4:+26310378 None:intergenic
AAAGCCAACTTCTTGGGTTG+CGG 0.404798 6_4:-26310123 Msa0983160:CDS
GGATTTATGTTGGCTTCGTC+GGG 0.406463 6_4:-26309219 Msa0983160:CDS
TTGCTTGCACGGCTTTCGAC+CGG 0.410329 6_4:-26308869 Msa0983160:CDS
AGGATTTATGTTGGCTTCGT+CGG 0.413029 6_4:-26309220 Msa0983160:CDS
GACCCAGCAGCTGCCGGTCG+GGG 0.413579 6_4:+26309835 None:intergenic
CCACTTCTCATTCCATTTGT+GGG 0.416058 6_4:-26309587 Msa0983160:CDS
ATTCTATGCCGACCCCGGCC+CGG 0.419460 6_4:+26310175 None:intergenic
CTTTCGACCGGGACGGGAAG+AGG 0.420223 6_4:-26308857 Msa0983160:CDS
CGAGGTCTCGATCATTTACA+TGG 0.420959 6_4:-26309612 Msa0983160:intron
ACAGCAAAGAAGGCCTTCTA+AGG 0.428985 6_4:-26308161 Msa0983160:CDS
AGATATGCTTCGATTGGAAC+TGG 0.429623 6_4:-26309309 Msa0983160:CDS
CGTGCAAGCAAAGACGTTAG+AGG 0.430977 6_4:+26308881 None:intergenic
GCTTTGCCAACACAACATTA+GGG 0.431283 6_4:+26310141 None:intergenic
GTTGGCAAAGCCAACTTCTT+GGG 0.432759 6_4:-26310129 Msa0983160:CDS
CCGGAAAGTTTATTGGCAAC+AGG 0.434595 6_4:+26309490 None:intergenic
ATACAGCTCGGGCCGAAGAC+CGG 0.442080 6_4:+26309789 None:intergenic
CTCATATGAGAATGGAAAAC+TGG 0.445029 6_4:-26309466 Msa0983160:CDS
TTCCCACCGCGCTCACGGCC+CGG 0.445440 6_4:+26310220 None:intergenic
CGCACCATTACTGCTGGGGT+GGG 0.445863 6_4:+26309726 None:intergenic
CTACCGCTGGAAGGCCAGCC+GGG 0.449228 6_4:-26310238 Msa0983160:intron
CATTCATGGACGGTCACTTA+GGG 0.451324 6_4:-26308595 Msa0983160:intron
GCCAATCGCTGATCTGTTAG+TGG 0.452923 6_4:-26308645 Msa0983160:CDS
GAAATTAACAATAATAAATC+GGG 0.458057 6_4:-26308217 Msa0983160:CDS
CCGATGAAGGAGAAACTTGC+TGG 0.458697 6_4:-26308088 Msa0983160:CDS
CCGCACCATTACTGCTGGGG+TGG 0.460417 6_4:+26309725 None:intergenic
ACGGATAGATATGCTTCGAT+TGG 0.460582 6_4:-26309315 Msa0983160:CDS
TCATTCATGGACGGTCACTT+AGG 0.462564 6_4:-26308596 Msa0983160:CDS
AACAACGCTCCTTCCCCATA+TGG 0.463316 6_4:+26309640 None:intergenic
GGGTTCTTCCCTCTTGTCCT+CGG 0.463897 6_4:+26308062 None:intergenic
CTCCTTCCCCATATGGAGTT+CGG 0.467009 6_4:+26309647 None:intergenic
CTCTAACGTCTTTGCTTGCA+CGG 0.470171 6_4:-26308880 Msa0983160:CDS
AACAGATCAGCGATTGGCAT+TGG 0.472540 6_4:+26308650 None:intergenic
AACTCGCCCCACGTACGGTT+CGG 0.472758 6_4:-26309758 Msa0983160:CDS
CCAGCAGCTGCCGGTCGGGG+CGG 0.473246 6_4:+26309838 None:intergenic
CATTTGTAAGAGTCCTCCTC+AGG 0.476570 6_4:-26308122 Msa0983160:CDS
GAGACCCAGCAGCTGCCGGT+CGG 0.477652 6_4:+26309833 None:intergenic
TGCTTGCACGGCTTTCGACC+GGG 0.478724 6_4:-26308868 Msa0983160:CDS
ACTACCGCTGGAAGGCCAGC+CGG 0.483155 6_4:-26310239 Msa0983160:intron
AAGCTTATCCCCGCCCCGAC+CGG 0.485515 6_4:-26309848 Msa0983160:CDS
TGTTAGTGGACAGAGCTTCT+GGG 0.489545 6_4:-26308631 Msa0983160:CDS
TTGGGTTCCGAACTCCATAT+GGG 0.491526 6_4:-26309654 Msa0983160:CDS
ACCTTACCTTTATCGCCCGT+CGG 0.491998 6_4:-26308791 Msa0983160:CDS
TGCATCTTTCCACACAGCAT+TGG 0.492653 6_4:-26308825 Msa0983160:CDS
AGCAGACGTAGGCTTCTAAT+GGG 0.496092 6_4:+26308003 None:intergenic
CAGCCGGGCCGTGAGCGCGG+TGG 0.498669 6_4:-26310223 Msa0983160:CDS
AAAAGGCAGTTTAATTATGG+TGG 0.498772 6_4:+26309260 None:intergenic
TGCACGGCTTTCGACCGGGA+CGG 0.500492 6_4:-26308864 Msa0983160:CDS
TCTTCGGCCCGAGCTGTATG+AGG 0.501176 6_4:-26309785 Msa0983160:CDS
CCGCCCGCAACCCAAGAAGT+TGG 0.504276 6_4:+26310119 None:intergenic
TATTCGGATAGGATTTATGT+TGG 0.504584 6_4:-26309229 Msa0983160:CDS
CTAAGCCGCACCATTACTGC+TGG 0.504746 6_4:+26309720 None:intergenic
ACACAGATGGACAGCAAAGA+AGG 0.509516 6_4:-26308171 Msa0983160:CDS
AGGCCTTCTAAGGCGGACTC+TGG 0.509544 6_4:-26308151 Msa0983160:CDS
GAGCCCCACCCCAGCAGTAA+TGG 0.510043 6_4:-26309730 Msa0983160:CDS
TGCGAACCTTGACGCCCGAC+GGG 0.510569 6_4:+26308776 None:intergenic
AGTTTCTGCCTCATACAGCT+CGG 0.515951 6_4:+26309777 None:intergenic
TGGGGAGACCCAGCAGCTGC+CGG 0.516111 6_4:+26309829 None:intergenic
GGAACTGGAAGTTCCAGAAC+AGG 0.517306 6_4:-26309294 Msa0983160:CDS
CCTTACCTTTATCGCCCGTC+GGG 0.525411 6_4:-26308790 Msa0983160:CDS
CCAGCAAGTTTCTCCTTCAT+CGG 0.526011 6_4:+26308088 None:intergenic
CATGAGGCGATCGTTCGTTA+GGG 0.530158 6_4:+26309542 None:intergenic
ACCGTCCATGAATGAAAGAA+TGG 0.534673 6_4:+26308604 None:intergenic
TTTGTTACGTCAGCTCCAAA+AGG 0.535085 6_4:-26309184 Msa0983160:CDS
GCACCATTACTGCTGGGGTG+GGG 0.538302 6_4:+26309727 None:intergenic
TTTCCGGCCTCATATGAGAA+TGG 0.538939 6_4:-26309474 Msa0983160:CDS
CGGGCGATAAAGGTAAGGTA+AGG 0.541179 6_4:+26308795 None:intergenic
GGCACGAGATTGTCCGATGA+AGG 0.542322 6_4:-26308101 Msa0983160:CDS
CCTTCATTCTATGCCGACCC+CGG 0.542373 6_4:+26310170 None:intergenic
TCCATTCTTTCATTCATGGA+CGG 0.545247 6_4:-26308605 Msa0983160:CDS
CATCTCTCCTAAACTTCCCC+CGG 0.547799 6_4:-26309808 Msa0983160:CDS
GTTTCTGCCTCATACAGCTC+GGG 0.549518 6_4:+26309778 None:intergenic
GAGGAAACCTCTTCCCGTCC+CGG 0.552826 6_4:+26308850 None:intergenic
AACTGTAACGGATTCACCCT+AGG 0.553495 6_4:+26308040 None:intergenic
TTGCTGTCCATCTGTGTGAG+AGG 0.557091 6_4:+26308177 None:intergenic
TGGGTGTAAGCCTCGCTGCT+CGG 0.557420 6_4:-26310449 Msa0983160:CDS
TGCTGGTTGCCGAGGACAAG+AGG 0.565924 6_4:-26308071 Msa0983160:CDS
CGGGGTCGGCATAGAATGAA+GGG 0.567642 6_4:-26310169 Msa0983160:CDS
TTTATGTTGGCTTCGTCGGG+AGG 0.568263 6_4:-26309216 Msa0983160:CDS
GCAGAAACTCGCCCCACGTA+CGG 0.568645 6_4:-26309763 Msa0983160:CDS
TTTCCATTCTCATATGAGGC+CGG 0.569642 6_4:+26309471 None:intergenic
GGGTGAATCCGTTACAGTTG+CGG 0.572733 6_4:-26308036 Msa0983160:CDS
AGGCGATCGTTCGTTAGGGA+CGG 0.574187 6_4:+26309546 None:intergenic
TAAGCCGCACCATTACTGCT+GGG 0.575414 6_4:+26309721 None:intergenic
CCCACAAATGGAATGAGAAG+TGG 0.576883 6_4:+26309587 None:intergenic
ACTGTAACGGATTCACCCTA+GGG 0.580403 6_4:+26308041 None:intergenic
GAGAAACTTGCTGGTTGCCG+AGG 0.584163 6_4:-26308079 Msa0983160:CDS
AAGAATGCCTCTCACACAGA+TGG 0.589254 6_4:-26308184 Msa0983160:CDS
GGACAATCTCGTGCCTGAGG+AGG 0.591046 6_4:+26308109 None:intergenic
AACAACGAGCACGACTGAAG+TGG 0.592537 6_4:-26309358 Msa0983160:CDS
TCGCCCCACGTACGGTTCGG+AGG 0.595092 6_4:-26309755 Msa0983160:CDS
ATCGGACAATCTCGTGCCTG+AGG 0.595328 6_4:+26308106 None:intergenic
TCCACTAACAGATCAGCGAT+TGG 0.597249 6_4:+26308644 None:intergenic
TCCAAAAGGATAAGTTGCGT+TGG 0.598164 6_4:-26309170 Msa0983160:CDS
CCAACTTCTTGGGTTGCGGG+CGG 0.601762 6_4:-26310119 Msa0983160:CDS
TTCCGAACTCCATATGGGGA+AGG 0.601852 6_4:-26309649 Msa0983160:CDS
CCACAAATGGAATGAGAAGT+GGG 0.607621 6_4:+26309588 None:intergenic
TTGGATGAACTAATGCGAAT+GGG 0.608426 6_4:-26310468 None:intergenic
GGGTTGCGGGCGGAGAAGAG+CGG 0.611745 6_4:-26310109 Msa0983160:CDS
GGGCGATAAAGGTAAGGTAA+GGG 0.613080 6_4:+26308796 None:intergenic
TTTGGATGAACTAATGCGAA+TGG 0.616157 6_4:-26310469 None:intergenic
GGTAATGCCAGTTGGCGAAG+TGG 0.617022 6_4:-26310385 Msa0983160:CDS
AAAGTTTATTGGCAACAGGT+CGG 0.617299 6_4:+26309494 None:intergenic
GGATGGCCCTAATGTTGTGT+TGG 0.624287 6_4:-26310147 Msa0983160:CDS
CCACCCCAGCAGTAATGGTG+CGG 0.624478 6_4:-26309725 Msa0983160:CDS
AAAGCGCAGGTAATGCCAGT+TGG 0.627476 6_4:-26310393 Msa0983160:CDS
CGGCCTCCGAACCGTACGTG+GGG 0.627484 6_4:+26309752 None:intergenic
GCAAAGAAGGCCTTCTAAGG+CGG 0.631599 6_4:-26308158 Msa0983160:CDS
CGCTTTCGTCTCTCTCAGTG+TGG 0.633261 6_4:+26310410 None:intergenic
ATTCATCATGCTCAAACATG+AGG 0.643382 6_4:+26309526 None:intergenic
GCTGGTTGCCGAGGACAAGA+GGG 0.644222 6_4:-26308070 Msa0983160:CDS
TGGGTTCCGAACTCCATATG+GGG 0.648864 6_4:-26309653 Msa0983160:CDS
ACAAGAGGGAAGAACCCCTA+GGG 0.649278 6_4:-26308056 Msa0983160:CDS
GACAAGAGGGAAGAACCCCT+AGG 0.649952 6_4:-26308057 Msa0983160:CDS
TCGGCATAGAATGAAGGGGA+TGG 0.655914 6_4:-26310164 Msa0983160:CDS
AAGCCGCACCATTACTGCTG+GGG 0.656288 6_4:+26309722 None:intergenic
ACTGAGAGAGACGAAAGCGC+AGG 0.664834 6_4:-26310406 Msa0983160:CDS
ACTGGAAGTTCCAGAACAGG+CGG 0.667091 6_4:-26309291 Msa0983160:CDS
CTGGGTGTTTCCGAGCAGCG+AGG 0.675742 6_4:+26310439 None:intergenic
GGGGTCGGCATAGAATGAAG+GGG 0.682209 6_4:-26310168 Msa0983160:CDS
GGGACAGAACCAATGCTGTG+TGG 0.684133 6_4:+26308816 None:intergenic
ATATGGAGTTCGGAACCCAA+AGG 0.687361 6_4:+26309657 None:intergenic
GGGGAAGTTTAGGAGAGATG+GGG 0.694692 6_4:+26309811 None:intergenic
CTGTAACGGATTCACCCTAG+GGG 0.770874 6_4:+26308042 None:intergenic
CTGTGTGGAAAGATGCAACG+AGG 0.793122 6_4:+26308831 None:intergenic
GTGGCGTTAAGCATCCCTAG+CGG 0.814346 6_4:-26310366 Msa0983160:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTAACAATAATAAAT+CGG - chr6_4:26310256-26310275 Msa0983160:intron 10.0%
!!! TATAGTATATAAATGGATTT+TGG - chr6_4:26308584-26308603 Msa0983160:intron 15.0%
!!! ATAGTATATAAATGGATTTT+GGG - chr6_4:26308585-26308604 Msa0983160:intron 15.0%
!! ATAGCGAAAATAATAATTTA+TGG - chr6_4:26309058-26309077 Msa0983160:intron 15.0%
!!! TGCCTTTTATTTTTTTTATT+CGG - chr6_4:26309229-26309248 Msa0983160:CDS 15.0%
!! ATCCGAATAAAAAAAATAAA+AGG + chr6_4:26309234-26309253 None:intergenic 15.0%
!!! TTTATTTTTTTTATTCGGAT+AGG - chr6_4:26309234-26309253 Msa0983160:CDS 15.0%
!! AATTGCATTAAAAAAATCAA+AGG - chr6_4:26309353-26309372 Msa0983160:CDS 15.0%
!! GAAATTAACAATAATAAATC+GGG - chr6_4:26310257-26310276 Msa0983160:intron 15.0%
!!! TATTTCATCCCATTTTTTTT+CGG + chr6_4:26308541-26308560 None:intergenic 20.0%
!!! TAGTATATAAATGGATTTTG+GGG - chr6_4:26308586-26308605 Msa0983160:intron 20.0%
!! TATACATACAAATCCATTTA+CGG - chr6_4:26309140-26309159 Msa0983160:intron 20.0%
!! AATAAAAGGCAGTTTAATTA+TGG + chr6_4:26309220-26309239 None:intergenic 20.0%
!!! AAATGCACATTTATTTTTAC+GGG + chr6_4:26310186-26310205 None:intergenic 20.0%
!!! CAAATGCACATTTATTTTTA+CGG + chr6_4:26310187-26310206 None:intergenic 20.0%
!!! ATTTCATCCCATTTTTTTTC+GGG + chr6_4:26308540-26308559 None:intergenic 25.0%
!!! AGTATATAAATGGATTTTGG+GGG - chr6_4:26308587-26308606 Msa0983160:intron 25.0%
!!! CTCTAAAGTATCTTTTTTCT+GGG + chr6_4:26309095-26309114 None:intergenic 25.0%
!!! TCTCTAAAGTATCTTTTTTC+TGG + chr6_4:26309096-26309115 None:intergenic 25.0%
! TAATGCAATTAAGAATTCCA+CGG + chr6_4:26309343-26309362 None:intergenic 25.0%
! TAAGATTGCTTAATGAGTTA+TGG + chr6_4:26309524-26309543 None:intergenic 25.0%
CTAGCGCTATAGTATATAAA+TGG - chr6_4:26308577-26308596 Msa0983160:intron 30.0%
!! GTATATAAATGGATTTTGGG+GGG - chr6_4:26308588-26308607 Msa0983160:intron 30.0%
!! TATATAAATGGATTTTGGGG+GGG - chr6_4:26308589-26308608 Msa0983160:intron 30.0%
AAAAGGCAGTTTAATTATGG+TGG + chr6_4:26309217-26309236 None:intergenic 30.0%
TATTCGGATAGGATTTATGT+TGG - chr6_4:26309245-26309264 Msa0983160:CDS 30.0%
GCAAAAATACGATAGATAAG+GGG + chr6_4:26309730-26309749 None:intergenic 30.0%
GGCAAAAATACGATAGATAA+GGG + chr6_4:26309731-26309750 None:intergenic 30.0%
CAATAAACTAATGGAAGATG+AGG + chr6_4:26310050-26310069 None:intergenic 30.0%
CGATGTTGACAATAAACTAA+TGG + chr6_4:26310059-26310078 None:intergenic 30.0%
TAGTTGTTAAGTCTTTCCTT+CGG - chr6_4:26310103-26310122 Msa0983160:intron 30.0%
TAAGAGAGCCATTCCATTTA+GGG - chr6_4:26308420-26308439 Msa0983160:intron 35.0%
!!! ATCCCATTTTTTTTCGGGAT+AGG + chr6_4:26308535-26308554 None:intergenic 35.0%
GATCATCAAATTCCCACAAA+TGG + chr6_4:26308902-26308921 None:intergenic 35.0%
ATTCATCATGCTCAAACATG+AGG + chr6_4:26308951-26308970 None:intergenic 35.0%
AAAGTTTATTGGCAACAGGT+CGG + chr6_4:26308983-26309002 None:intergenic 35.0%
! CAGTTTTCCATTCTCATATG+AGG + chr6_4:26309010-26309029 None:intergenic 35.0%
CTCATATGAGAATGGAAAAC+TGG - chr6_4:26309008-26309027 Msa0983160:intron 35.0%
! AACTGGAGAATTTTCTGCAT+CGG - chr6_4:26309025-26309044 Msa0983160:intron 35.0%
!!! GTATCTTTTTTCTGGGAACA+TGG + chr6_4:26309088-26309107 None:intergenic 35.0%
GAAGCATATCTATCCGTAAA+TGG + chr6_4:26309156-26309175 None:intergenic 35.0%
TCAATCAATAGAGGCTAGAT+CGG - chr6_4:26309390-26309409 Msa0983160:intron 35.0%
CTCATGTCAGTATTATCACA+GGG + chr6_4:26309475-26309494 None:intergenic 35.0%
ACTCATGTCAGTATTATCAC+AGG + chr6_4:26309476-26309495 None:intergenic 35.0%
TGATAATACTGACATGAGTC+AGG - chr6_4:26309477-26309496 Msa0983160:CDS 35.0%
GGGCAAAAATACGATAGATA+AGG + chr6_4:26309732-26309751 None:intergenic 35.0%
GCAATCCATTCTTTCATTCA+TGG - chr6_4:26309865-26309884 Msa0983160:intron 35.0%
TCCATTCTTTCATTCATGGA+CGG - chr6_4:26309869-26309888 Msa0983160:intron 35.0%
GTTTATTGTCAACATCGTAG+AGG - chr6_4:26310062-26310081 Msa0983160:intron 35.0%
AGTTGTTAAGTCTTTCCTTC+GGG - chr6_4:26310104-26310123 Msa0983160:intron 35.0%
TGTTGTGCACTAAGAACTTT+AGG + chr6_4:26310229-26310248 None:intergenic 35.0%
GCTTTGCCAACACAACATTA+GGG + chr6_4:26308336-26308355 None:intergenic 40.0%
CTAAGAGAGCCATTCCATTT+AGG - chr6_4:26308419-26308438 Msa0983160:intron 40.0%
!!! CCATTTTTTTTCGGGATAGG+CGG + chr6_4:26308532-26308551 None:intergenic 40.0%
CGCCTATCCCGAAAAAAAAT+GGG - chr6_4:26308530-26308549 Msa0983160:intron 40.0%
TTCACTCAACGATTGCCTTT+GGG - chr6_4:26308802-26308821 Msa0983160:CDS 40.0%
CATGTAAATGATCGAGACCT+CGG + chr6_4:26308864-26308883 None:intergenic 40.0%
CCACAAATGGAATGAGAAGT+GGG + chr6_4:26308889-26308908 None:intergenic 40.0%
CCACTTCTCATTCCATTTGT+GGG - chr6_4:26308887-26308906 Msa0983160:CDS 40.0%
CCTGTTGCCAATAAACTTTC+CGG - chr6_4:26308984-26309003 Msa0983160:intron 40.0%
TATGAGGCCGGAAAGTTTAT+TGG + chr6_4:26308994-26309013 None:intergenic 40.0%
TTTCCATTCTCATATGAGGC+CGG + chr6_4:26309006-26309025 None:intergenic 40.0%
ACGGATAGATATGCTTCGAT+TGG - chr6_4:26309159-26309178 Msa0983160:CDS 40.0%
AGATATGCTTCGATTGGAAC+TGG - chr6_4:26309165-26309184 Msa0983160:CDS 40.0%
!! AGGATTTATGTTGGCTTCGT+CGG - chr6_4:26309254-26309273 Msa0983160:CDS 40.0%
TTTGTTACGTCAGCTCCAAA+AGG - chr6_4:26309290-26309309 Msa0983160:CDS 40.0%
TCCAAAAGGATAAGTTGCGT+TGG - chr6_4:26309304-26309323 Msa0983160:CDS 40.0%
! TCCAACGCAACTTATCCTTT+TGG + chr6_4:26309308-26309327 None:intergenic 40.0%
TCAACCCTCTCAATCAATAG+AGG - chr6_4:26309381-26309400 Msa0983160:intron 40.0%
! CTAGCCTCTATTGATTGAGA+GGG + chr6_4:26309388-26309407 None:intergenic 40.0%
! TCTAGCCTCTATTGATTGAG+AGG + chr6_4:26309389-26309408 None:intergenic 40.0%
GGATAAATCCGAATGACTAG+TGG - chr6_4:26309498-26309517 Msa0983160:CDS 40.0%
AGTTATGGCCACTAGTCATT+CGG + chr6_4:26309509-26309528 None:intergenic 40.0%
ACCGTCCATGAATGAAAGAA+TGG + chr6_4:26309873-26309892 None:intergenic 40.0%
! CCTCTTTGGAGATGAAAAGA+AGG + chr6_4:26309910-26309929 None:intergenic 40.0%
! CCTTCTTTTCATCTCCAAAG+AGG - chr6_4:26309907-26309926 Msa0983160:intron 40.0%
TATTGTCAACATCGTAGAGG+TGG - chr6_4:26310065-26310084 Msa0983160:intron 40.0%
AGATCAGACAAATAACCCGA+AGG + chr6_4:26310122-26310141 None:intergenic 40.0%
AAGTTCTTAGTGCACAACAG+AGG - chr6_4:26310230-26310249 Msa0983160:intron 40.0%
AGTTCTTAGTGCACAACAGA+GGG - chr6_4:26310231-26310250 Msa0983160:intron 40.0%
! TCAAAGACTTGGTTGGATGC+GGG + chr6_4:26308194-26308213 None:intergenic 45.0%
! GTCAAAGACTTGGTTGGATG+CGG + chr6_4:26308195-26308214 None:intergenic 45.0%
ATCCAACCAAGTCTTTGACC+AGG - chr6_4:26308196-26308215 Msa0983160:CDS 45.0%
TCCAACCAAGTCTTTGACCA+GGG - chr6_4:26308197-26308216 Msa0983160:CDS 45.0%
GGCTTTGCCAACACAACATT+AGG + chr6_4:26308337-26308356 None:intergenic 45.0%
TGTTGGCAAAGCCAACTTCT+TGG - chr6_4:26308344-26308363 Msa0983160:intron 45.0%
GTTGGCAAAGCCAACTTCTT+GGG - chr6_4:26308345-26308364 Msa0983160:intron 45.0%
! AAAGCCAACTTCTTGGGTTG+CGG - chr6_4:26308351-26308370 Msa0983160:intron 45.0%
! CATTTAGGGCGAGACAGAAT+GGG - chr6_4:26308434-26308453 Msa0983160:intron 45.0%
CCGCCTATCCCGAAAAAAAA+TGG - chr6_4:26308529-26308548 Msa0983160:intron 45.0%
AGTTTCTGCCTCATACAGCT+CGG + chr6_4:26308700-26308719 None:intergenic 45.0%
GTTCACTCAACGATTGCCTT+TGG - chr6_4:26308801-26308820 Msa0983160:CDS 45.0%
ATATGGAGTTCGGAACCCAA+AGG + chr6_4:26308820-26308839 None:intergenic 45.0%
! TTTGGGTTCCGAACTCCATA+TGG - chr6_4:26308819-26308838 Msa0983160:CDS 45.0%
TTGGGTTCCGAACTCCATAT+GGG - chr6_4:26308820-26308839 Msa0983160:CDS 45.0%
CGAGGTCTCGATCATTTACA+TGG - chr6_4:26308862-26308881 Msa0983160:CDS 45.0%
CCCACTTCTCATTCCATTTG+TGG - chr6_4:26308886-26308905 Msa0983160:CDS 45.0%
CCCACAAATGGAATGAGAAG+TGG + chr6_4:26308890-26308909 None:intergenic 45.0%
CCGGAAAGTTTATTGGCAAC+AGG + chr6_4:26308987-26309006 None:intergenic 45.0%
TTTCCGGCCTCATATGAGAA+TGG - chr6_4:26309000-26309019 Msa0983160:intron 45.0%
! TGGAGAATTTTCTGCATCGG+TGG - chr6_4:26309028-26309047 Msa0983160:intron 45.0%
!! GGATTTATGTTGGCTTCGTC+GGG - chr6_4:26309255-26309274 Msa0983160:CDS 45.0%
TTGGAATCGAGAAAGTTCCG+TGG - chr6_4:26309323-26309342 Msa0983160:CDS 45.0%
ATAGAGGCTAGATCGGACTA+AGG - chr6_4:26309397-26309416 Msa0983160:intron 45.0%
GAGGAAAGGCTAAGCGAAAA+AGG + chr6_4:26309548-26309567 None:intergenic 45.0%
CGTAACGGTAGAAAGAGGAA+AGG + chr6_4:26309562-26309581 None:intergenic 45.0%
CATCTCGTAACGGTAGAAAG+AGG + chr6_4:26309567-26309586 None:intergenic 45.0%
GAGGATACTGCATCTCGTAA+CGG + chr6_4:26309577-26309596 None:intergenic 45.0%
CTCTAACGTCTTTGCTTGCA+CGG - chr6_4:26309594-26309613 Msa0983160:CDS 45.0%
TGCATCTTTCCACACAGCAT+TGG - chr6_4:26309649-26309668 Msa0983160:CDS 45.0%
GGGCGATAAAGGTAAGGTAA+GGG + chr6_4:26309681-26309700 None:intergenic 45.0%
!! TTGCTCTGGGCTTTTTGTTG+GGG + chr6_4:26309752-26309771 None:intergenic 45.0%
!! CTTGCTCTGGGCTTTTTGTT+GGG + chr6_4:26309753-26309772 None:intergenic 45.0%
CAACAAAAAGCCCAGAGCAA+GGG - chr6_4:26309752-26309771 Msa0983160:CDS 45.0%
AACAAAAAGCCCAGAGCAAG+GGG - chr6_4:26309753-26309772 Msa0983160:CDS 45.0%
!!! GATTGGCATTGGTTTTGGTG+GGG + chr6_4:26309816-26309835 None:intergenic 45.0%
!!! CGATTGGCATTGGTTTTGGT+GGG + chr6_4:26309817-26309836 None:intergenic 45.0%
!!! TCAGCGATTGGCATTGGTTT+TGG + chr6_4:26309821-26309840 None:intergenic 45.0%
AACAGATCAGCGATTGGCAT+TGG + chr6_4:26309827-26309846 None:intergenic 45.0%
TCCACTAACAGATCAGCGAT+TGG + chr6_4:26309833-26309852 None:intergenic 45.0%
! TGTTAGTGGACAGAGCTTCT+GGG - chr6_4:26309843-26309862 Msa0983160:CDS 45.0%
TCATTCATGGACGGTCACTT+AGG - chr6_4:26309878-26309897 Msa0983160:intron 45.0%
CATTCATGGACGGTCACTTA+GGG - chr6_4:26309879-26309898 Msa0983160:intron 45.0%
TTTCATCTCCAAAGAGGACG+AGG - chr6_4:26309913-26309932 Msa0983160:intron 45.0%
!! TGTTTTTGCCTCGTCCTCTT+TGG + chr6_4:26309924-26309943 None:intergenic 45.0%
AAAAACAGCGTTCCGTTGTC+CGG - chr6_4:26309937-26309956 Msa0983160:intron 45.0%
ATAGCGTTCTTCAGACCGAA+GGG + chr6_4:26310003-26310022 None:intergenic 45.0%
TATAGCGTTCTTCAGACCGA+AGG + chr6_4:26310004-26310023 None:intergenic 45.0%
TGTGCATTTGACGTAACAGC+AGG - chr6_4:26310197-26310216 Msa0983160:CDS 45.0%
GTTCTTAGTGCACAACAGAG+GGG - chr6_4:26310232-26310251 Msa0983160:intron 45.0%
!! GAGAGGCATTCTTCAACTTC+TGG + chr6_4:26310283-26310302 None:intergenic 45.0%
AAGAATGCCTCTCACACAGA+TGG - chr6_4:26310290-26310309 Msa0983160:intron 45.0%
ACACAGATGGACAGCAAAGA+AGG - chr6_4:26310303-26310322 Msa0983160:intron 45.0%
ACAGCAAAGAAGGCCTTCTA+AGG - chr6_4:26310313-26310332 Msa0983160:intron 45.0%
CATTTGTAAGAGTCCTCCTC+AGG - chr6_4:26310352-26310371 Msa0983160:intron 45.0%
CCAGCAAGTTTCTCCTTCAT+CGG + chr6_4:26310389-26310408 None:intergenic 45.0%
!! ACTGTAACGGATTCACCCTA+GGG + chr6_4:26310436-26310455 None:intergenic 45.0%
!! AACTGTAACGGATTCACCCT+AGG + chr6_4:26310437-26310456 None:intergenic 45.0%
ATCGCATTCCGCAACTGTAA+CGG + chr6_4:26310449-26310468 None:intergenic 45.0%
AAAGCGCAGGTAATGCCAGT+TGG - chr6_4:26308081-26308100 Msa0983160:CDS 50.0%
! CCTCTCTTTTCGTACCGCTA+GGG + chr6_4:26308125-26308144 None:intergenic 50.0%
! ACCTCTCTTTTCGTACCGCT+AGG + chr6_4:26308126-26308145 None:intergenic 50.0%
! TCCCTGGTCAAAGACTTGGT+TGG + chr6_4:26308201-26308220 None:intergenic 50.0%
CCAAGTCTTTGACCAGGGAA+CGG - chr6_4:26308202-26308221 Msa0983160:CDS 50.0%
CAAGTCTTTGACCAGGGAAC+GGG - chr6_4:26308203-26308222 Msa0983160:CDS 50.0%
TAATTCCCACTACCGCTGGA+AGG - chr6_4:26308227-26308246 Msa0983160:CDS 50.0%
TCGGCATAGAATGAAGGGGA+TGG - chr6_4:26308310-26308329 Msa0983160:intron 50.0%
GGATGGCCCTAATGTTGTGT+TGG - chr6_4:26308327-26308346 Msa0983160:intron 50.0%
! AAGCCAACTTCTTGGGTTGC+GGG - chr6_4:26308352-26308371 Msa0983160:intron 50.0%
CTGTCTCGCCCTAAATGGAA+TGG + chr6_4:26308431-26308450 None:intergenic 50.0%
CCATTCTGTCTCGCCCTAAA+TGG + chr6_4:26308436-26308455 None:intergenic 50.0%
! CCATTTAGGGCGAGACAGAA+TGG - chr6_4:26308433-26308452 Msa0983160:intron 50.0%
GTAGTCGTCGTCTGACCAAT+TGG + chr6_4:26308486-26308505 None:intergenic 50.0%
GGGGAAGTTTAGGAGAGATG+GGG + chr6_4:26308666-26308685 None:intergenic 50.0%
GGGGGAAGTTTAGGAGAGAT+GGG + chr6_4:26308667-26308686 None:intergenic 50.0%
CATCTCTCCTAAACTTCCCC+CGG - chr6_4:26308666-26308685 Msa0983160:CDS 50.0%
GTTTCTGCCTCATACAGCTC+GGG + chr6_4:26308699-26308718 None:intergenic 50.0%
TAAGCCGCACCATTACTGCT+GGG + chr6_4:26308756-26308775 None:intergenic 50.0%
TGGGTTCCGAACTCCATATG+GGG - chr6_4:26308821-26308840 Msa0983160:CDS 50.0%
TTCCGAACTCCATATGGGGA+AGG - chr6_4:26308825-26308844 Msa0983160:CDS 50.0%
CTCCTTCCCCATATGGAGTT+CGG + chr6_4:26308830-26308849 None:intergenic 50.0%
AACAACGCTCCTTCCCCATA+TGG + chr6_4:26308837-26308856 None:intergenic 50.0%
!! AAGGAGCGTTGTTGTTTCCG+AGG - chr6_4:26308844-26308863 Msa0983160:CDS 50.0%
CATGAGGCGATCGTTCGTTA+GGG + chr6_4:26308935-26308954 None:intergenic 50.0%
ACATGAGGCGATCGTTCGTT+AGG + chr6_4:26308936-26308955 None:intergenic 50.0%
AACAACGAGCACGACTGAAG+TGG - chr6_4:26309116-26309135 Msa0983160:intron 50.0%
GGAACTGGAAGTTCCAGAAC+AGG - chr6_4:26309180-26309199 Msa0983160:CDS 50.0%
ACTGGAAGTTCCAGAACAGG+CGG - chr6_4:26309183-26309202 Msa0983160:CDS 50.0%
!! TTTATGTTGGCTTCGTCGGG+AGG - chr6_4:26309258-26309277 Msa0983160:CDS 50.0%
GATCGGACTAAGGAGAGAGA+CGG - chr6_4:26309407-26309426 Msa0983160:intron 50.0%
AGGAGAGAGACGGTTGAGTA+CGG - chr6_4:26309417-26309436 Msa0983160:CDS 50.0%
GTTGAGTACGGAAGCGAAAG+CGG - chr6_4:26309429-26309448 Msa0983160:CDS 50.0%
GGAAGCGAAAGCGGAGATAT+AGG - chr6_4:26309438-26309457 Msa0983160:CDS 50.0%
CGTGCAAGCAAAGACGTTAG+AGG + chr6_4:26309596-26309615 None:intergenic 50.0%
CTGTGTGGAAAGATGCAACG+AGG + chr6_4:26309646-26309665 None:intergenic 50.0%
CGGGCGATAAAGGTAAGGTA+AGG + chr6_4:26309682-26309701 None:intergenic 50.0%
ACCTTACCTTTATCGCCCGT+CGG - chr6_4:26309683-26309702 Msa0983160:CDS 50.0%
!! CCTTGCTCTGGGCTTTTTGT+TGG + chr6_4:26309754-26309773 None:intergenic 50.0%
CCAACAAAAAGCCCAGAGCA+AGG - chr6_4:26309751-26309770 Msa0983160:CDS 50.0%
ACAAAAAGCCCAGAGCAAGG+GGG - chr6_4:26309754-26309773 Msa0983160:CDS 50.0%
GGGGGGAAAGAATGCAATTC+CGG - chr6_4:26309782-26309801 Msa0983160:CDS 50.0%
! TTTTGGTGGGGCTGAGATTC+CGG + chr6_4:26309804-26309823 None:intergenic 50.0%
!!! GCGATTGGCATTGGTTTTGG+TGG + chr6_4:26309818-26309837 None:intergenic 50.0%
GCCAATCGCTGATCTGTTAG+TGG - chr6_4:26309829-26309848 Msa0983160:CDS 50.0%
! CTGTTAGTGGACAGAGCTTC+TGG - chr6_4:26309842-26309861 Msa0983160:CDS 50.0%
AAAACAGCGTTCCGTTGTCC+GGG - chr6_4:26309938-26309957 Msa0983160:intron 50.0%
AGATGAGGTTCATTGCTCGC+TGG + chr6_4:26310035-26310054 None:intergenic 50.0%
AGTGTTTGAGCGCGAGAACA+CGG - chr6_4:26310148-26310167 Msa0983160:CDS 50.0%
TTGCTGTCCATCTGTGTGAG+AGG + chr6_4:26310300-26310319 None:intergenic 50.0%
! GCAAAGAAGGCCTTCTAAGG+CGG - chr6_4:26310316-26310335 Msa0983160:intron 50.0%
CCGATGAAGGAGAAACTTGC+TGG - chr6_4:26310386-26310405 Msa0983160:CDS 50.0%
ACAAGAGGGAAGAACCCCTA+GGG - chr6_4:26310418-26310437 Msa0983160:CDS 50.0%
!! CTGTAACGGATTCACCCTAG+GGG + chr6_4:26310435-26310454 None:intergenic 50.0%
GGGTGAATCCGTTACAGTTG+CGG - chr6_4:26310438-26310457 Msa0983160:CDS 50.0%
CTCTCAGTGTGGTCAGCACT+GGG + chr6_4:26308056-26308075 None:intergenic 55.0%
TCTCTCAGTGTGGTCAGCAC+TGG + chr6_4:26308057-26308076 None:intergenic 55.0%
CGCTTTCGTCTCTCTCAGTG+TGG + chr6_4:26308067-26308086 None:intergenic 55.0%
! ACTGAGAGAGACGAAAGCGC+AGG - chr6_4:26308068-26308087 Msa0983160:CDS 55.0%
GGTAATGCCAGTTGGCGAAG+TGG - chr6_4:26308089-26308108 Msa0983160:CDS 55.0%
CTTAACGCCACTTCGCCAAC+TGG + chr6_4:26308099-26308118 None:intergenic 55.0%
GTGGCGTTAAGCATCCCTAG+CGG - chr6_4:26308108-26308127 Msa0983160:CDS 55.0%
CCCTAGCGGTACGAAAAGAG+AGG - chr6_4:26308122-26308141 Msa0983160:CDS 55.0%
CCGTTCCCTGGTCAAAGACT+TGG + chr6_4:26308205-26308224 None:intergenic 55.0%
GTGGGAATTATCCCGTTCCC+TGG + chr6_4:26308217-26308236 None:intergenic 55.0%
GGGATAATTCCCACTACCGC+TGG - chr6_4:26308223-26308242 Msa0983160:CDS 55.0%
CCTTCATTCTATGCCGACCC+CGG + chr6_4:26308307-26308326 None:intergenic 55.0%
CGGGGTCGGCATAGAATGAA+GGG - chr6_4:26308305-26308324 Msa0983160:intron 55.0%
GGGGTCGGCATAGAATGAAG+GGG - chr6_4:26308306-26308325 Msa0983160:intron 55.0%
TTAGGGCGAGACAGAATGGG+CGG - chr6_4:26308437-26308456 Msa0983160:intron 55.0%
CGTCGTCTGACCAATTGGCT+CGG + chr6_4:26308481-26308500 None:intergenic 55.0%
CGGGGGAAGTTTAGGAGAGA+TGG + chr6_4:26308668-26308687 None:intergenic 55.0%
CCTAAACTTCCCCCGGTCTT+CGG - chr6_4:26308673-26308692 Msa0983160:CDS 55.0%
AAGCCGCACCATTACTGCTG+GGG + chr6_4:26308755-26308774 None:intergenic 55.0%
CTAAGCCGCACCATTACTGC+TGG + chr6_4:26308757-26308776 None:intergenic 55.0%
CAGCAGTAATGGTGCGGCTT+AGG - chr6_4:26308755-26308774 Msa0983160:intron 55.0%
AGGCGATCGTTCGTTAGGGA+CGG + chr6_4:26308931-26308950 None:intergenic 55.0%
TTGCTTGCACGGCTTTCGAC+CGG - chr6_4:26309605-26309624 Msa0983160:CDS 55.0%
GGGACAGAACCAATGCTGTG+TGG + chr6_4:26309661-26309680 None:intergenic 55.0%
CCTTACCTTTATCGCCCGTC+GGG - chr6_4:26309684-26309703 Msa0983160:CDS 55.0%
CAAAAAGCCCAGAGCAAGGG+GGG - chr6_4:26309755-26309774 Msa0983160:CDS 55.0%
GAGGTTCATTGCTCGCTGGT+AGG + chr6_4:26310031-26310050 None:intergenic 55.0%
ATCGGACAATCTCGTGCCTG+AGG + chr6_4:26310371-26310390 None:intergenic 55.0%
GGCACGAGATTGTCCGATGA+AGG - chr6_4:26310373-26310392 Msa0983160:CDS 55.0%
!! GAGAAACTTGCTGGTTGCCG+AGG - chr6_4:26310395-26310414 Msa0983160:CDS 55.0%
GGGTTCTTCCCTCTTGTCCT+CGG + chr6_4:26310415-26310434 None:intergenic 55.0%
GACAAGAGGGAAGAACCCCT+AGG - chr6_4:26310417-26310436 Msa0983160:CDS 55.0%
TGGGTGTAAGCCTCGCTGCT+CGG - chr6_4:26308025-26308044 Msa0983160:CDS 60.0%
GCTTCCCAAAAAGCCAGCCC+CGG - chr6_4:26308280-26308299 Msa0983160:intron 60.0%
CTTCCCAAAAAGCCAGCCCC+GGG - chr6_4:26308281-26308300 Msa0983160:intron 60.0%
CCGGGGTCGGCATAGAATGA+AGG - chr6_4:26308304-26308323 Msa0983160:intron 60.0%
! CCAACTTCTTGGGTTGCGGG+CGG - chr6_4:26308355-26308374 Msa0983160:intron 60.0%
CTCTTAGTTACGCTGCGCCC+CGG + chr6_4:26308406-26308425 None:intergenic 60.0%
TAGGGCGAGACAGAATGGGC+GGG - chr6_4:26308438-26308457 Msa0983160:intron 60.0%
GGTCTGGTGTCCGAGCCAAT+TGG - chr6_4:26308468-26308487 Msa0983160:intron 60.0%
CCGAAGACCGGGGGAAGTTT+AGG + chr6_4:26308676-26308695 None:intergenic 60.0%
ATACAGCTCGGGCCGAAGAC+CGG + chr6_4:26308688-26308707 None:intergenic 60.0%
TCTTCGGCCCGAGCTGTATG+AGG - chr6_4:26308689-26308708 Msa0983160:CDS 60.0%
GCAGAAACTCGCCCCACGTA+CGG - chr6_4:26308711-26308730 Msa0983160:CDS 60.0%
AACTCGCCCCACGTACGGTT+CGG - chr6_4:26308716-26308735 Msa0983160:intron 60.0%
ATTACTGCTGGGGTGGGGCT+CGG + chr6_4:26308745-26308764 None:intergenic 60.0%
GCACCATTACTGCTGGGGTG+GGG + chr6_4:26308750-26308769 None:intergenic 60.0%
CGCACCATTACTGCTGGGGT+GGG + chr6_4:26308751-26308770 None:intergenic 60.0%
CCACCCCAGCAGTAATGGTG+CGG - chr6_4:26308749-26308768 Msa0983160:intron 60.0%
GAAGTTCCAGAACAGGCGGC+TGG - chr6_4:26309187-26309206 Msa0983160:CDS 60.0%
GGTATACCAGCCGCCTGTTC+TGG + chr6_4:26309196-26309215 None:intergenic 60.0%
TGCTTGCACGGCTTTCGACC+GGG - chr6_4:26309606-26309625 Msa0983160:CDS 60.0%
GAGGAAACCTCTTCCCGTCC+CGG + chr6_4:26309627-26309646 None:intergenic 60.0%
CCCGACGGGCGATAAAGGTA+AGG + chr6_4:26309687-26309706 None:intergenic 60.0%
ATGCGAACCTTGACGCCCGA+CGG + chr6_4:26309702-26309721 None:intergenic 60.0%
! TTCCGTTGTCCGGGTGCTGT+TGG - chr6_4:26309947-26309966 Msa0983160:intron 60.0%
GTCCAACAGCACCCGGACAA+CGG + chr6_4:26309952-26309971 None:intergenic 60.0%
!! GTTGTCCGGGTGCTGTTGGA+CGG - chr6_4:26309951-26309970 Msa0983160:intron 60.0%
!! GGACGGACGGACTATTCTGC+TGG - chr6_4:26309968-26309987 Msa0983160:intron 60.0%
!! GGACGGACTATTCTGCTGGC+AGG - chr6_4:26309972-26309991 Msa0983160:intron 60.0%
TGCTGGCAGGTGATGCCCTT+CGG - chr6_4:26309985-26310004 Msa0983160:intron 60.0%
!! AGGCCTTCTAAGGCGGACTC+TGG - chr6_4:26310323-26310342 Msa0983160:intron 60.0%
GAGCCAGAGTCCGCCTTAGA+AGG + chr6_4:26310329-26310348 None:intergenic 60.0%
GGACAATCTCGTGCCTGAGG+AGG + chr6_4:26310368-26310387 None:intergenic 60.0%
! TGCTGGTTGCCGAGGACAAG+AGG - chr6_4:26310403-26310422 Msa0983160:CDS 60.0%
GCTGGTTGCCGAGGACAAGA+GGG - chr6_4:26310404-26310423 Msa0983160:CDS 60.0%
CTGGGTGTTTCCGAGCAGCG+AGG + chr6_4:26308038-26308057 None:intergenic 65.0%
TACGTCCGTACCGCTCCTCG+CGG - chr6_4:26308161-26308180 Msa0983160:CDS 65.0%
CTACTCCGCGAGGAGCGGTA+CGG + chr6_4:26308169-26308188 None:intergenic 65.0%
GGGATCTACTCCGCGAGGAG+CGG + chr6_4:26308174-26308193 None:intergenic 65.0%
GATGCGGGATCTACTCCGCG+AGG + chr6_4:26308179-26308198 None:intergenic 65.0%
!! GCTGGCCTTCCAGCGGTAGT+GGG + chr6_4:26308235-26308254 None:intergenic 65.0%
ACTACCGCTGGAAGGCCAGC+CGG - chr6_4:26308235-26308254 Msa0983160:intron 65.0%
ATTCTATGCCGACCCCGGCC+CGG + chr6_4:26308302-26308321 None:intergenic 65.0%
CCGCCCGCAACCCAAGAAGT+TGG + chr6_4:26308358-26308377 None:intergenic 65.0%
ACAGAATGGGCGGGCACGAG+CGG - chr6_4:26308447-26308466 Msa0983160:intron 65.0%
AAGCTTATCCCCGCCCCGAC+CGG - chr6_4:26308626-26308645 Msa0983160:CDS 65.0%
TACAGCTCGGGCCGAAGACC+GGG + chr6_4:26308687-26308706 None:intergenic 65.0%
TCGGCCTCCGAACCGTACGT+GGG + chr6_4:26308726-26308745 None:intergenic 65.0%
GAGCCCCACCCCAGCAGTAA+TGG - chr6_4:26308744-26308763 Msa0983160:intron 65.0%
CCGCACCATTACTGCTGGGG+TGG + chr6_4:26308752-26308771 None:intergenic 65.0%
TGCACGGCTTTCGACCGGGA+CGG - chr6_4:26309610-26309629 Msa0983160:CDS 65.0%
CTTTCGACCGGGACGGGAAG+AGG - chr6_4:26309617-26309636 Msa0983160:intron 65.0%
TGACGCCCGACGGGCGATAA+AGG + chr6_4:26309692-26309711 None:intergenic 65.0%
TTATCGCCCGTCGGGCGTCA+AGG - chr6_4:26309692-26309711 Msa0983160:CDS 65.0%
TGCGAACCTTGACGCCCGAC+GGG + chr6_4:26309701-26309720 None:intergenic 65.0%
!! TCCGGGTGCTGTTGGACGGA+CGG - chr6_4:26309955-26309974 Msa0983160:intron 65.0%
TCCGTCCGTCCAACAGCACC+CGG + chr6_4:26309959-26309978 None:intergenic 65.0%
!! GGCTGGCCTTCCAGCGGTAG+TGG + chr6_4:26308236-26308255 None:intergenic 70.0%
CTACCGCTGGAAGGCCAGCC+GGG - chr6_4:26308236-26308255 Msa0983160:intron 70.0%
!!! CGGCCCGGGGCTGGCTTTTT+GGG + chr6_4:26308287-26308306 None:intergenic 70.0%
CCAAAAAGCCAGCCCCGGGC+CGG - chr6_4:26308285-26308304 Msa0983160:intron 70.0%
CAAAAAGCCAGCCCCGGGCC+GGG - chr6_4:26308286-26308305 Msa0983160:intron 70.0%
AAAAAGCCAGCCCCGGGCCG+GGG - chr6_4:26308287-26308306 Msa0983160:intron 70.0%
TTCTATGCCGACCCCGGCCC+GGG + chr6_4:26308301-26308320 None:intergenic 70.0%
GGGTTGCGGGCGGAGAAGAG+CGG - chr6_4:26308365-26308384 Msa0983160:intron 70.0%
GGGCGGAGAAGAGCGGACGT+GGG - chr6_4:26308372-26308391 Msa0983160:intron 70.0%
GGCGGAGAAGAGCGGACGTG+GGG - chr6_4:26308373-26308392 Msa0983160:intron 70.0%
GCGGACGTGGGGACTCAGAC+CGG - chr6_4:26308384-26308403 Msa0983160:intron 70.0%
CGGACGTGGGGACTCAGACC+GGG - chr6_4:26308385-26308404 Msa0983160:intron 70.0%
GGACGTGGGGACTCAGACCG+GGG - chr6_4:26308386-26308405 Msa0983160:intron 70.0%
AGACCCAGCAGCTGCCGGTC+GGG + chr6_4:26308643-26308662 None:intergenic 70.0%
GAGACCCAGCAGCTGCCGGT+CGG + chr6_4:26308644-26308663 None:intergenic 70.0%
TGGGGAGACCCAGCAGCTGC+CGG + chr6_4:26308648-26308667 None:intergenic 70.0%
ACAGCTCGGGCCGAAGACCG+GGG + chr6_4:26308686-26308705 None:intergenic 70.0%
! TCGCCCCACGTACGGTTCGG+AGG - chr6_4:26308719-26308738 Msa0983160:intron 70.0%
CGGCCTCCGAACCGTACGTG+GGG + chr6_4:26308725-26308744 None:intergenic 70.0%
CTCGGCCTCCGAACCGTACG+TGG + chr6_4:26308727-26308746 None:intergenic 70.0%
GCACGGCTTTCGACCGGGAC+GGG - chr6_4:26309611-26309630 Msa0983160:CDS 70.0%
AAGCCCAGAGCAAGGGGGGC+TGG - chr6_4:26309759-26309778 Msa0983160:CDS 70.0%
AGCCCAGAGCAAGGGGGGCT+GGG - chr6_4:26309760-26309779 Msa0983160:CDS 70.0%
TTCCCACCGCGCTCACGGCC+CGG + chr6_4:26308257-26308276 None:intergenic 75.0%
GGCCGTGAGCGCGGTGGGAA+CGG - chr6_4:26308257-26308276 Msa0983160:intron 75.0%
GCCGTGAGCGCGGTGGGAAC+GGG - chr6_4:26308258-26308277 Msa0983160:intron 75.0%
GCCCGTTCCCACCGCGCTCA+CGG + chr6_4:26308262-26308281 None:intergenic 75.0%
!!! CCGGCCCGGGGCTGGCTTTT+TGG + chr6_4:26308288-26308307 None:intergenic 75.0%
TCTATGCCGACCCCGGCCCG+GGG + chr6_4:26308300-26308319 None:intergenic 75.0%
CGGGCGGAGAAGAGCGGACG+TGG - chr6_4:26308371-26308390 Msa0983160:intron 75.0%
ATGGGCGGGCACGAGCGGTC+TGG - chr6_4:26308452-26308471 Msa0983160:intron 75.0%
GACCCAGCAGCTGCCGGTCG+GGG + chr6_4:26308642-26308661 None:intergenic 75.0%
CAGCTCGGGCCGAAGACCGG+GGG + chr6_4:26308685-26308704 None:intergenic 75.0%
GCCCAGAGCAAGGGGGGCTG+GGG - chr6_4:26309761-26309780 Msa0983160:CDS 75.0%
CCCCCAGCCCCCCTTGCTCT+GGG + chr6_4:26309765-26309784 None:intergenic 75.0%
CCCAGAGCAAGGGGGGCTGG+GGG - chr6_4:26309762-26309781 Msa0983160:CDS 75.0%
CCAGAGCAAGGGGGGCTGGG+GGG - chr6_4:26309763-26309782 Msa0983160:CDS 75.0%
CAGAGCAAGGGGGGCTGGGG+GGG - chr6_4:26309764-26309783 Msa0983160:CDS 75.0%
AGAGCAAGGGGGGCTGGGGG+GGG - chr6_4:26309765-26309784 Msa0983160:CDS 75.0%
!!! CGGCCCGGCTGGCCTTCCAG+CGG + chr6_4:26308242-26308261 None:intergenic 80.0%
! AGCCGGGCCGTGAGCGCGGT+GGG - chr6_4:26308252-26308271 Msa0983160:intron 80.0%
! AGCAGCTGCCGGTCGGGGCG+GGG + chr6_4:26308637-26308656 None:intergenic 80.0%
! CAGCAGCTGCCGGTCGGGGC+GGG + chr6_4:26308638-26308657 None:intergenic 80.0%
! CCAGCAGCTGCCGGTCGGGG+CGG + chr6_4:26308639-26308658 None:intergenic 80.0%
! CGCCCCGACCGGCAGCTGCT+GGG - chr6_4:26308637-26308656 Msa0983160:CDS 80.0%
! CCCCCCAGCCCCCCTTGCTC+TGG + chr6_4:26309766-26309785 None:intergenic 80.0%
! GGCCAGCCGGGCCGTGAGCG+CGG - chr6_4:26308248-26308267 Msa0983160:intron 85.0%
! CACCGCGCTCACGGCCCGGC+TGG + chr6_4:26308253-26308272 None:intergenic 85.0%
! CAGCCGGGCCGTGAGCGCGG+TGG - chr6_4:26308251-26308270 Msa0983160:intron 85.0%
! AGCCAGCCCCGGGCCGGGGT+CGG - chr6_4:26308291-26308310 Msa0983160:intron 85.0%
! CCGCCCCGACCGGCAGCTGC+TGG - chr6_4:26308636-26308655 Msa0983160:CDS 85.0%
! TGCCGACCCCGGCCCGGGGC+TGG + chr6_4:26308296-26308315 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 26308018 26310478 26308018 ID=Msa0983160;Name=Msa0983160
chr6_4 mRNA 26308018 26310478 26308018 ID=Msa0983160-mRNA-1;Parent=Msa0983160;Name=Msa0983160-mRNA-1;_AED=0.24;_eAED=0.31;_QI=0|0|0|1|0|0.12|8|0|475
chr6_4 exon 26310367 26310478 26310367 ID=Msa0983160-mRNA-1:exon:7391;Parent=Msa0983160-mRNA-1
chr6_4 exon 26310107 26310247 26310107 ID=Msa0983160-mRNA-1:exon:7390;Parent=Msa0983160-mRNA-1
chr6_4 exon 26309646 26309867 26309646 ID=Msa0983160-mRNA-1:exon:7389;Parent=Msa0983160-mRNA-1
chr6_4 exon 26309408 26309630 26309408 ID=Msa0983160-mRNA-1:exon:7388;Parent=Msa0983160-mRNA-1
chr6_4 exon 26309155 26309392 26309155 ID=Msa0983160-mRNA-1:exon:7387;Parent=Msa0983160-mRNA-1
chr6_4 exon 26308783 26308906 26308783 ID=Msa0983160-mRNA-1:exon:7386;Parent=Msa0983160-mRNA-1
chr6_4 exon 26308596 26308734 26308596 ID=Msa0983160-mRNA-1:exon:7385;Parent=Msa0983160-mRNA-1
chr6_4 exon 26308018 26308246 26308018 ID=Msa0983160-mRNA-1:exon:7384;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26310367 26310478 26310367 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26310107 26310247 26310107 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26309646 26309867 26309646 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26309408 26309630 26309408 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26309155 26309392 26309155 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26308783 26308906 26308783 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26308596 26308734 26308596 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
chr6_4 CDS 26308018 26308246 26308018 ID=Msa0983160-mRNA-1:cds;Parent=Msa0983160-mRNA-1
Gene Sequence

>Msa0983160

ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGAGACGAAAGCGCAGGTAATGCCAGTTGGCGAAGTGGCGTTAAGCATCCCTAGCGGCCAGCCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAAGCCAGCCCCGGGCCGGGGTCGGCATAGAATGAAGGGGATGGCCCTAATGTTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCGGAGAAGAGCGGACCTTATCCCCGCCCCGACCGGCAGCTGCTGGGTCTCCCCATCTCTCCTAAACTTCCCCCGGTCTTCGGCCCGAGCTGTATGAGGCAGAAACTCGCCCCACGTACGGTTCGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCGGCTTAGGTCAACTAACACAAAGAAGATACAGTTCACTCAACGATTGCCTTTGGGTTCCGAACTCCATATGGGGAAGGAGCGTCTCGATCATTTACATGGACCCACTTCTCATTCCATTTGTGGGAATTTGATGATCTATAAACCGTCCCTAACGAACGATCGCCTCATGTTTGAGCATGATGAATCACTTCGTGCCGACCTGTTGCCAATAAACTTTCCGGCCTCATATGAGAATGGAAAACTGGAGAATTTTCTGCATCGGTGGATGAAGAATAGCGAAAATAATAATTTATGGTTGACCATATACTTTAGAGAAACAACGAGCACGACTGAAGTGGCTATACATACAAATCCATTTACGGATAGATATGCTTCGATTGGAACTGGAAGTTCCAGAACAGGCGGCTGGTATACCACCATAATTAAACTGCCTTTTATTTTTTTTATTCGGATAGGATTTATGTTGGCTTCGTCGGGAGGCTCGCGTAGTTTGTTACGTCAGCTCCAAAAGGATAAGTTGCGTTGGAATCGAGAAAGTTCCTATCCTCTAACGTCTTTGCTTGCACGGCTTTCGACCGGGACGGGAAGAGGTTTCCTCGTTGCATCTTTCCACACAGCATTGGTTCTGTCCCTTACCTTACCTTTATCGCCCGTCGGGCGTCAAGCCCAGAGCAAGGGGGGCTGGGGGGGGAAAGAATGCAATTCCGGAATCTCAGCCCCACCAAAACCAATGCCAATCGCTGATCTGTTAGTGGACAGAGCTTCTGGGCAATCCATTCTTTCATTCATGGACGGTCACTTAGGAGGGGTTGAAATTAACAATAATAAATCGGGCCAGAAGTTGAAGAATGCCTCTCACACAGATGGACAGCAAAGAAGGCCTTCTAAGGCGGACTCTGGCTCTTTCATTTGTAAGAGTCCTCCTCAGGCACGAGATTGTCCGATGAAGGAGAAACTTGCTGGTTGCCGAGGACAAGAGGGAAGAACCCCTAGGGTGAATCCGTTACAGTTGCGGAATGCGATCACCCATTAG

Protein sequence

>Msa0983160

MRMGVSLAARKHPVLTTLRETKAQVMPVGEVALSIPSGQPGRERGGNGLPKKPAPGRGRHRMKGMALMLCWQSQLLGLRAEKSGPYPRPDRQLLGLPISPKLPPVFGPSCMRQKLAPRTVRRPSPTPAVMVRLRSTNTKKIQFTQRLPLGSELHMGKERLDHLHGPTSHSICGNLMIYKPSLTNDRLMFEHDESLRADLLPINFPASYENGKLENFLHRWMKNSENNNLWLTIYFRETTSTTEVAIHTNPFTDRYASIGTGSSRTGGWYTTIIKLPFIFFIRIGFMLASSGGSRSLLRQLQKDKLRWNRESSYPLTSLLARLSTGTGRGFLVASFHTALVLSLTLPLSPVGRQAQSKGGWGGKECNSGISAPPKPMPIADLLVDRASGQSILSFMDGHLGGVEINNNKSGQKLKNASHTDGQQRRPSKADSGSFICKSPPQARDCPMKEKLAGCRGQEGRTPRVNPLQLRNAITH*