AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944950 MtrunA17_MTg0491381 94.340 212 2 2 111 312 1 212 3.61e-142 407
Msa0944950 MtrunA17_Chr6g0457311 93.158 190 3 2 133 312 258 447 9.17e-120 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944950 ATMG00180.1 81.865 193 25 2 130 312 254 446 2.39e-103 316

Find 159 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCGAAAATAATAATTTA+TGG 0.188271 6_3:+22380249 Msa0944950:CDS
CTGTTAGTGGACAGAGCTTC+TGG 0.208328 6_3:+22381033 Msa0944950:CDS
TATGAGGCCGGAAAGTTTAT+TGG 0.241442 6_3:-22380182 None:intergenic
AATAAAAGGCAGTTTAATTA+TGG 0.257005 6_3:-22380408 None:intergenic
GGTATACCAGCCGCCTGTTC+TGG 0.261255 6_3:-22380384 None:intergenic
CCGCCCCGACCGGCAGCTGC+TGG 0.271520 6_3:+22379827 Msa0944950:CDS
TCAGCGATTGGCATTGGTTT+TGG 0.278134 6_3:-22381009 None:intergenic
TTCTATGCCGACCCCGGCCC+GGG 0.278863 6_3:-22379489 None:intergenic
CCTGTTGCCAATAAACTTTC+CGG 0.284972 6_3:+22380175 Msa0944950:CDS
GGCTTTGCCAACACAACATT+AGG 0.291533 6_3:-22379525 None:intergenic
GAAGCATATCTATCCGTAAA+TGG 0.301221 6_3:-22380344 None:intergenic
GAGAGGCATTCTTCAACTTC+TGG 0.301504 6_3:-22381471 None:intergenic
GCAATCCATTCTTTCATTCA+TGG 0.301920 6_3:+22381056 Msa0944950:CDS
CAGCAGCTGCCGGTCGGGGC+GGG 0.304794 6_3:-22379826 None:intergenic
GCCGTGAGCGCGGTGGGAAC+GGG 0.316107 6_3:+22379449 Msa0944950:CDS
TCCAACGCAACTTATCCTTT+TGG 0.321802 6_3:-22380496 None:intergenic
TGAAATTAACAATAATAAAT+CGG 0.322581 6_3:+22381447 Msa0944950:CDS
GGCCGTGAGCGCGGTGGGAA+CGG 0.322985 6_3:+22379448 Msa0944950:CDS
TCTCTCAGTGTGGTCAGCAC+TGG 0.333171 6_3:-22379245 None:intergenic
AAGCCAACTTCTTGGGTTGC+GGG 0.342786 6_3:+22379543 Msa0944950:CDS
TGTTGGCAAAGCCAACTTCT+TGG 0.342955 6_3:+22379535 Msa0944950:CDS
ACATGAGGCGATCGTTCGTT+AGG 0.352912 6_3:-22380124 None:intergenic
AGACCCAGCAGCTGCCGGTC+GGG 0.354277 6_3:-22379831 None:intergenic
CCCACTTCTCATTCCATTTG+TGG 0.355708 6_3:+22380077 Msa0944950:CDS
ATTACTGCTGGGGTGGGGCT+CGG 0.356446 6_3:-22379933 None:intergenic
GTTCACTCAACGATTGCCTT+TGG 0.367519 6_3:+22379992 Msa0944950:CDS
GAGCCAGAGTCCGCCTTAGA+AGG 0.372563 6_3:-22381517 None:intergenic
CTCTCAGTGTGGTCAGCACT+GGG 0.376688 6_3:-22379244 None:intergenic
CAGCAGTAATGGTGCGGCTT+AGG 0.383155 6_3:+22379946 Msa0944950:CDS
GATCATCAAATTCCCACAAA+TGG 0.389159 6_3:-22380090 None:intergenic
TTTGGGTTCCGAACTCCATA+TGG 0.390141 6_3:+22380010 Msa0944950:CDS
TATACATACAAATCCATTTA+CGG 0.398392 6_3:+22380331 Msa0944950:CDS
TTCACTCAACGATTGCCTTT+GGG 0.400692 6_3:+22379993 Msa0944950:CDS
CTTAACGCCACTTCGCCAAC+TGG 0.402672 6_3:-22379287 None:intergenic
AAAGCCAACTTCTTGGGTTG+CGG 0.404798 6_3:+22379542 Msa0944950:CDS
GGATTTATGTTGGCTTCGTC+GGG 0.406463 6_3:+22380446 Msa0944950:CDS
TTGCTTGCACGGCTTTCGAC+CGG 0.410329 6_3:+22380796 Msa0944950:CDS
AGGATTTATGTTGGCTTCGT+CGG 0.413029 6_3:+22380445 Msa0944950:CDS
GACCCAGCAGCTGCCGGTCG+GGG 0.413579 6_3:-22379830 None:intergenic
CCACTTCTCATTCCATTTGT+GGG 0.416058 6_3:+22380078 Msa0944950:CDS
ATTCTATGCCGACCCCGGCC+CGG 0.419460 6_3:-22379490 None:intergenic
CTTTCGACCGGGACGGGAAG+AGG 0.420223 6_3:+22380808 Msa0944950:CDS
CGAGGTCTCGATCATTTACA+TGG 0.420959 6_3:+22380053 Msa0944950:intron
ACAGCAAAGAAGGCCTTCTA+AGG 0.428985 6_3:+22381504 Msa0944950:CDS
AGATATGCTTCGATTGGAAC+TGG 0.429623 6_3:+22380356 Msa0944950:CDS
CGTGCAAGCAAAGACGTTAG+AGG 0.430977 6_3:-22380784 None:intergenic
GCTTTGCCAACACAACATTA+GGG 0.431283 6_3:-22379524 None:intergenic
GTTGGCAAAGCCAACTTCTT+GGG 0.432759 6_3:+22379536 Msa0944950:CDS
CCGGAAAGTTTATTGGCAAC+AGG 0.434595 6_3:-22380175 None:intergenic
ATACAGCTCGGGCCGAAGAC+CGG 0.442080 6_3:-22379876 None:intergenic
CTCATATGAGAATGGAAAAC+TGG 0.445029 6_3:+22380199 Msa0944950:CDS
TTCCCACCGCGCTCACGGCC+CGG 0.445440 6_3:-22379445 None:intergenic
CGCACCATTACTGCTGGGGT+GGG 0.445863 6_3:-22379939 None:intergenic
CTACCGCTGGAAGGCCAGCC+GGG 0.449228 6_3:+22379427 Msa0944950:intron
CATTCATGGACGGTCACTTA+GGG 0.451324 6_3:+22381070 Msa0944950:CDS
GCCAATCGCTGATCTGTTAG+TGG 0.452923 6_3:+22381020 Msa0944950:CDS
GAAATTAACAATAATAAATC+GGG 0.458057 6_3:+22381448 Msa0944950:CDS
CCGATGAAGGAGAAACTTGC+TGG 0.458697 6_3:+22381577 Msa0944950:CDS
CCGCACCATTACTGCTGGGG+TGG 0.460417 6_3:-22379940 None:intergenic
ACGGATAGATATGCTTCGAT+TGG 0.460582 6_3:+22380350 Msa0944950:CDS
TCATTCATGGACGGTCACTT+AGG 0.462564 6_3:+22381069 Msa0944950:CDS
AACAACGCTCCTTCCCCATA+TGG 0.463316 6_3:-22380025 None:intergenic
GGGTTCTTCCCTCTTGTCCT+CGG 0.463897 6_3:-22381603 None:intergenic
CTCCTTCCCCATATGGAGTT+CGG 0.467009 6_3:-22380018 None:intergenic
CTCTAACGTCTTTGCTTGCA+CGG 0.470171 6_3:+22380785 Msa0944950:CDS
AACAGATCAGCGATTGGCAT+TGG 0.472540 6_3:-22381015 None:intergenic
AACTCGCCCCACGTACGGTT+CGG 0.472758 6_3:+22379907 Msa0944950:CDS
CCAGCAGCTGCCGGTCGGGG+CGG 0.473246 6_3:-22379827 None:intergenic
CATTTGTAAGAGTCCTCCTC+AGG 0.476570 6_3:+22381543 Msa0944950:CDS
GAGACCCAGCAGCTGCCGGT+CGG 0.477652 6_3:-22379832 None:intergenic
TGCTTGCACGGCTTTCGACC+GGG 0.478724 6_3:+22380797 Msa0944950:CDS
ACTACCGCTGGAAGGCCAGC+CGG 0.483155 6_3:+22379426 Msa0944950:intron
AAGCTTATCCCCGCCCCGAC+CGG 0.485515 6_3:+22379817 Msa0944950:intron
TGTTAGTGGACAGAGCTTCT+GGG 0.489545 6_3:+22381034 Msa0944950:CDS
TTGGGTTCCGAACTCCATAT+GGG 0.491526 6_3:+22380011 Msa0944950:CDS
ACCTTACCTTTATCGCCCGT+CGG 0.491998 6_3:+22380874 Msa0944950:CDS
TGCATCTTTCCACACAGCAT+TGG 0.492653 6_3:+22380840 Msa0944950:CDS
AGCAGACGTAGGCTTCTAAT+GGG 0.496092 6_3:-22381662 None:intergenic
CAGCCGGGCCGTGAGCGCGG+TGG 0.498669 6_3:+22379442 Msa0944950:CDS
AAAAGGCAGTTTAATTATGG+TGG 0.498772 6_3:-22380405 None:intergenic
TGCACGGCTTTCGACCGGGA+CGG 0.500492 6_3:+22380801 Msa0944950:CDS
TCTTCGGCCCGAGCTGTATG+AGG 0.501176 6_3:+22379880 Msa0944950:CDS
CCGCCCGCAACCCAAGAAGT+TGG 0.504276 6_3:-22379546 None:intergenic
TATTCGGATAGGATTTATGT+TGG 0.504584 6_3:+22380436 Msa0944950:CDS
CTAAGCCGCACCATTACTGC+TGG 0.504746 6_3:-22379945 None:intergenic
ACACAGATGGACAGCAAAGA+AGG 0.509516 6_3:+22381494 Msa0944950:CDS
AGGCCTTCTAAGGCGGACTC+TGG 0.509544 6_3:+22381514 Msa0944950:CDS
GAGCCCCACCCCAGCAGTAA+TGG 0.510043 6_3:+22379935 Msa0944950:CDS
TGCGAACCTTGACGCCCGAC+GGG 0.510569 6_3:-22380889 None:intergenic
AGTTTCTGCCTCATACAGCT+CGG 0.515951 6_3:-22379888 None:intergenic
TGGGGAGACCCAGCAGCTGC+CGG 0.516111 6_3:-22379836 None:intergenic
GGAACTGGAAGTTCCAGAAC+AGG 0.517306 6_3:+22380371 Msa0944950:CDS
CCTTACCTTTATCGCCCGTC+GGG 0.525411 6_3:+22380875 Msa0944950:CDS
CCAGCAAGTTTCTCCTTCAT+CGG 0.526011 6_3:-22381577 None:intergenic
CATGAGGCGATCGTTCGTTA+GGG 0.530158 6_3:-22380123 None:intergenic
ACCGTCCATGAATGAAAGAA+TGG 0.534673 6_3:-22381061 None:intergenic
TTTGTTACGTCAGCTCCAAA+AGG 0.535085 6_3:+22380481 Msa0944950:CDS
GCACCATTACTGCTGGGGTG+GGG 0.538302 6_3:-22379938 None:intergenic
TTTCCGGCCTCATATGAGAA+TGG 0.538939 6_3:+22380191 Msa0944950:CDS
CGGGCGATAAAGGTAAGGTA+AGG 0.541179 6_3:-22380870 None:intergenic
GGCACGAGATTGTCCGATGA+AGG 0.542322 6_3:+22381564 Msa0944950:CDS
CCTTCATTCTATGCCGACCC+CGG 0.542373 6_3:-22379495 None:intergenic
TCCATTCTTTCATTCATGGA+CGG 0.545247 6_3:+22381060 Msa0944950:CDS
CATCTCTCCTAAACTTCCCC+CGG 0.547799 6_3:+22379857 Msa0944950:CDS
GTTTCTGCCTCATACAGCTC+GGG 0.549518 6_3:-22379887 None:intergenic
GAGGAAACCTCTTCCCGTCC+CGG 0.552826 6_3:-22380815 None:intergenic
AACTGTAACGGATTCACCCT+AGG 0.553495 6_3:-22381625 None:intergenic
TTGCTGTCCATCTGTGTGAG+AGG 0.557091 6_3:-22381488 None:intergenic
TGGGTGTAAGCCTCGCTGCT+CGG 0.557420 6_3:+22379216 Msa0944950:CDS
TGCTGGTTGCCGAGGACAAG+AGG 0.565924 6_3:+22381594 Msa0944950:CDS
CGGGGTCGGCATAGAATGAA+GGG 0.567642 6_3:+22379496 Msa0944950:CDS
TTTATGTTGGCTTCGTCGGG+AGG 0.568263 6_3:+22380449 Msa0944950:CDS
GCAGAAACTCGCCCCACGTA+CGG 0.568645 6_3:+22379902 Msa0944950:CDS
TTTCCATTCTCATATGAGGC+CGG 0.569642 6_3:-22380194 None:intergenic
GGGTGAATCCGTTACAGTTG+CGG 0.572733 6_3:+22381629 Msa0944950:CDS
AGGCGATCGTTCGTTAGGGA+CGG 0.574187 6_3:-22380119 None:intergenic
TAAGCCGCACCATTACTGCT+GGG 0.575414 6_3:-22379944 None:intergenic
CCCACAAATGGAATGAGAAG+TGG 0.576883 6_3:-22380078 None:intergenic
ACTGTAACGGATTCACCCTA+GGG 0.580403 6_3:-22381624 None:intergenic
GAGAAACTTGCTGGTTGCCG+AGG 0.584163 6_3:+22381586 Msa0944950:CDS
AAGAATGCCTCTCACACAGA+TGG 0.589254 6_3:+22381481 Msa0944950:CDS
GGACAATCTCGTGCCTGAGG+AGG 0.591046 6_3:-22381556 None:intergenic
AACAACGAGCACGACTGAAG+TGG 0.592537 6_3:+22380307 Msa0944950:CDS
TCGCCCCACGTACGGTTCGG+AGG 0.595092 6_3:+22379910 Msa0944950:CDS
ATCGGACAATCTCGTGCCTG+AGG 0.595328 6_3:-22381559 None:intergenic
TCCACTAACAGATCAGCGAT+TGG 0.597249 6_3:-22381021 None:intergenic
TCCAAAAGGATAAGTTGCGT+TGG 0.598164 6_3:+22380495 Msa0944950:CDS
CCAACTTCTTGGGTTGCGGG+CGG 0.601762 6_3:+22379546 Msa0944950:CDS
TTCCGAACTCCATATGGGGA+AGG 0.601852 6_3:+22380016 Msa0944950:CDS
CCACAAATGGAATGAGAAGT+GGG 0.607621 6_3:-22380077 None:intergenic
TTGGATGAACTAATGCGAAT+GGG 0.608426 6_3:+22379197 None:intergenic
GGGTTGCGGGCGGAGAAGAG+CGG 0.611745 6_3:+22379556 Msa0944950:CDS
GGGCGATAAAGGTAAGGTAA+GGG 0.613080 6_3:-22380869 None:intergenic
TTTGGATGAACTAATGCGAA+TGG 0.616157 6_3:+22379196 None:intergenic
GGTAATGCCAGTTGGCGAAG+TGG 0.617022 6_3:+22379280 Msa0944950:CDS
AAAGTTTATTGGCAACAGGT+CGG 0.617299 6_3:-22380171 None:intergenic
GGATGGCCCTAATGTTGTGT+TGG 0.624287 6_3:+22379518 Msa0944950:CDS
CCACCCCAGCAGTAATGGTG+CGG 0.624478 6_3:+22379940 Msa0944950:CDS
AAAGCGCAGGTAATGCCAGT+TGG 0.627476 6_3:+22379272 Msa0944950:CDS
CGGCCTCCGAACCGTACGTG+GGG 0.627484 6_3:-22379913 None:intergenic
GCAAAGAAGGCCTTCTAAGG+CGG 0.631599 6_3:+22381507 Msa0944950:CDS
CGCTTTCGTCTCTCTCAGTG+TGG 0.633261 6_3:-22379255 None:intergenic
ATTCATCATGCTCAAACATG+AGG 0.643382 6_3:-22380139 None:intergenic
GCTGGTTGCCGAGGACAAGA+GGG 0.644222 6_3:+22381595 Msa0944950:CDS
TGGGTTCCGAACTCCATATG+GGG 0.648864 6_3:+22380012 Msa0944950:CDS
ACAAGAGGGAAGAACCCCTA+GGG 0.649278 6_3:+22381609 Msa0944950:CDS
GACAAGAGGGAAGAACCCCT+AGG 0.649952 6_3:+22381608 Msa0944950:CDS
TCGGCATAGAATGAAGGGGA+TGG 0.655914 6_3:+22379501 Msa0944950:CDS
AAGCCGCACCATTACTGCTG+GGG 0.656288 6_3:-22379943 None:intergenic
ACTGAGAGAGACGAAAGCGC+AGG 0.664834 6_3:+22379259 Msa0944950:CDS
ACTGGAAGTTCCAGAACAGG+CGG 0.667091 6_3:+22380374 Msa0944950:CDS
CTGGGTGTTTCCGAGCAGCG+AGG 0.675742 6_3:-22379226 None:intergenic
GGGGTCGGCATAGAATGAAG+GGG 0.682209 6_3:+22379497 Msa0944950:CDS
GGGACAGAACCAATGCTGTG+TGG 0.684133 6_3:-22380849 None:intergenic
ATATGGAGTTCGGAACCCAA+AGG 0.687361 6_3:-22380008 None:intergenic
GGGGAAGTTTAGGAGAGATG+GGG 0.694692 6_3:-22379854 None:intergenic
CTGTAACGGATTCACCCTAG+GGG 0.770874 6_3:-22381623 None:intergenic
CTGTGTGGAAAGATGCAACG+AGG 0.793122 6_3:-22380834 None:intergenic
GTGGCGTTAAGCATCCCTAG+CGG 0.814346 6_3:+22379299 Msa0944950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTAACAATAATAAAT+CGG + chr6_3:22381447-22381466 Msa0944950:CDS 10.0%
!!! TATAGTATATAAATGGATTT+TGG + chr6_3:22379775-22379794 Msa0944950:intron 15.0%
!!! ATAGTATATAAATGGATTTT+GGG + chr6_3:22379776-22379795 Msa0944950:intron 15.0%
!! ATAGCGAAAATAATAATTTA+TGG + chr6_3:22380249-22380268 Msa0944950:CDS 15.0%
!!! TGCCTTTTATTTTTTTTATT+CGG + chr6_3:22380420-22380439 Msa0944950:CDS 15.0%
!! ATCCGAATAAAAAAAATAAA+AGG - chr6_3:22380425-22380444 None:intergenic 15.0%
!!! TTTATTTTTTTTATTCGGAT+AGG + chr6_3:22380425-22380444 Msa0944950:CDS 15.0%
!! AATTGCATTAAAAAAATCAA+AGG + chr6_3:22380544-22380563 Msa0944950:intron 15.0%
!! GAAATTAACAATAATAAATC+GGG + chr6_3:22381448-22381467 Msa0944950:CDS 15.0%
!!! TATTTCATCCCATTTTTTTT+CGG - chr6_3:22379732-22379751 None:intergenic 20.0%
!!! TAGTATATAAATGGATTTTG+GGG + chr6_3:22379777-22379796 Msa0944950:intron 20.0%
!! TATACATACAAATCCATTTA+CGG + chr6_3:22380331-22380350 Msa0944950:CDS 20.0%
!! AATAAAAGGCAGTTTAATTA+TGG - chr6_3:22380411-22380430 None:intergenic 20.0%
!!! AAATGCACATTTATTTTTAC+GGG - chr6_3:22381377-22381396 None:intergenic 20.0%
!!! CAAATGCACATTTATTTTTA+CGG - chr6_3:22381378-22381397 None:intergenic 20.0%
!!! ATTTCATCCCATTTTTTTTC+GGG - chr6_3:22379731-22379750 None:intergenic 25.0%
!!! AGTATATAAATGGATTTTGG+GGG + chr6_3:22379778-22379797 Msa0944950:intron 25.0%
!!! CTCTAAAGTATCTTTTTTCT+GGG - chr6_3:22380286-22380305 None:intergenic 25.0%
!!! TCTCTAAAGTATCTTTTTTC+TGG - chr6_3:22380287-22380306 None:intergenic 25.0%
! TAATGCAATTAAGAATTCCA+CGG - chr6_3:22380534-22380553 None:intergenic 25.0%
! TAAGATTGCTTAATGAGTTA+TGG - chr6_3:22380715-22380734 None:intergenic 25.0%
CTAGCGCTATAGTATATAAA+TGG + chr6_3:22379768-22379787 Msa0944950:intron 30.0%
!! GTATATAAATGGATTTTGGG+GGG + chr6_3:22379779-22379798 Msa0944950:intron 30.0%
!! TATATAAATGGATTTTGGGG+GGG + chr6_3:22379780-22379799 Msa0944950:intron 30.0%
AAAAGGCAGTTTAATTATGG+TGG - chr6_3:22380408-22380427 None:intergenic 30.0%
TATTCGGATAGGATTTATGT+TGG + chr6_3:22380436-22380455 Msa0944950:CDS 30.0%
GCAAAAATACGATAGATAAG+GGG - chr6_3:22380921-22380940 None:intergenic 30.0%
GGCAAAAATACGATAGATAA+GGG - chr6_3:22380922-22380941 None:intergenic 30.0%
CAATAAACTAATGGAAGATG+AGG - chr6_3:22381241-22381260 None:intergenic 30.0%
CGATGTTGACAATAAACTAA+TGG - chr6_3:22381250-22381269 None:intergenic 30.0%
TAGTTGTTAAGTCTTTCCTT+CGG + chr6_3:22381294-22381313 Msa0944950:intron 30.0%
TAAGAGAGCCATTCCATTTA+GGG + chr6_3:22379611-22379630 Msa0944950:intron 35.0%
!!! ATCCCATTTTTTTTCGGGAT+AGG - chr6_3:22379726-22379745 None:intergenic 35.0%
GATCATCAAATTCCCACAAA+TGG - chr6_3:22380093-22380112 None:intergenic 35.0%
ATTCATCATGCTCAAACATG+AGG - chr6_3:22380142-22380161 None:intergenic 35.0%
AAAGTTTATTGGCAACAGGT+CGG - chr6_3:22380174-22380193 None:intergenic 35.0%
! CAGTTTTCCATTCTCATATG+AGG - chr6_3:22380201-22380220 None:intergenic 35.0%
CTCATATGAGAATGGAAAAC+TGG + chr6_3:22380199-22380218 Msa0944950:CDS 35.0%
! AACTGGAGAATTTTCTGCAT+CGG + chr6_3:22380216-22380235 Msa0944950:CDS 35.0%
!!! GTATCTTTTTTCTGGGAACA+TGG - chr6_3:22380279-22380298 None:intergenic 35.0%
GAAGCATATCTATCCGTAAA+TGG - chr6_3:22380347-22380366 None:intergenic 35.0%
TCAATCAATAGAGGCTAGAT+CGG + chr6_3:22380581-22380600 Msa0944950:intron 35.0%
CTCATGTCAGTATTATCACA+GGG - chr6_3:22380666-22380685 None:intergenic 35.0%
ACTCATGTCAGTATTATCAC+AGG - chr6_3:22380667-22380686 None:intergenic 35.0%
TGATAATACTGACATGAGTC+AGG + chr6_3:22380668-22380687 Msa0944950:intron 35.0%
GGGCAAAAATACGATAGATA+AGG - chr6_3:22380923-22380942 None:intergenic 35.0%
GCAATCCATTCTTTCATTCA+TGG + chr6_3:22381056-22381075 Msa0944950:CDS 35.0%
TCCATTCTTTCATTCATGGA+CGG + chr6_3:22381060-22381079 Msa0944950:CDS 35.0%
GTTTATTGTCAACATCGTAG+AGG + chr6_3:22381253-22381272 Msa0944950:intron 35.0%
AGTTGTTAAGTCTTTCCTTC+GGG + chr6_3:22381295-22381314 Msa0944950:intron 35.0%
TGTTGTGCACTAAGAACTTT+AGG - chr6_3:22381420-22381439 None:intergenic 35.0%
GCTTTGCCAACACAACATTA+GGG - chr6_3:22379527-22379546 None:intergenic 40.0%
CTAAGAGAGCCATTCCATTT+AGG + chr6_3:22379610-22379629 Msa0944950:intron 40.0%
!!! CCATTTTTTTTCGGGATAGG+CGG - chr6_3:22379723-22379742 None:intergenic 40.0%
CGCCTATCCCGAAAAAAAAT+GGG + chr6_3:22379721-22379740 Msa0944950:intron 40.0%
TTCACTCAACGATTGCCTTT+GGG + chr6_3:22379993-22380012 Msa0944950:CDS 40.0%
CATGTAAATGATCGAGACCT+CGG - chr6_3:22380055-22380074 None:intergenic 40.0%
CCACAAATGGAATGAGAAGT+GGG - chr6_3:22380080-22380099 None:intergenic 40.0%
CCACTTCTCATTCCATTTGT+GGG + chr6_3:22380078-22380097 Msa0944950:CDS 40.0%
CCTGTTGCCAATAAACTTTC+CGG + chr6_3:22380175-22380194 Msa0944950:CDS 40.0%
TATGAGGCCGGAAAGTTTAT+TGG - chr6_3:22380185-22380204 None:intergenic 40.0%
TTTCCATTCTCATATGAGGC+CGG - chr6_3:22380197-22380216 None:intergenic 40.0%
ACGGATAGATATGCTTCGAT+TGG + chr6_3:22380350-22380369 Msa0944950:CDS 40.0%
AGATATGCTTCGATTGGAAC+TGG + chr6_3:22380356-22380375 Msa0944950:CDS 40.0%
!! AGGATTTATGTTGGCTTCGT+CGG + chr6_3:22380445-22380464 Msa0944950:CDS 40.0%
TTTGTTACGTCAGCTCCAAA+AGG + chr6_3:22380481-22380500 Msa0944950:CDS 40.0%
TCCAAAAGGATAAGTTGCGT+TGG + chr6_3:22380495-22380514 Msa0944950:CDS 40.0%
! TCCAACGCAACTTATCCTTT+TGG - chr6_3:22380499-22380518 None:intergenic 40.0%
TCAACCCTCTCAATCAATAG+AGG + chr6_3:22380572-22380591 Msa0944950:intron 40.0%
! CTAGCCTCTATTGATTGAGA+GGG - chr6_3:22380579-22380598 None:intergenic 40.0%
! TCTAGCCTCTATTGATTGAG+AGG - chr6_3:22380580-22380599 None:intergenic 40.0%
GGATAAATCCGAATGACTAG+TGG + chr6_3:22380689-22380708 Msa0944950:intron 40.0%
AGTTATGGCCACTAGTCATT+CGG - chr6_3:22380700-22380719 None:intergenic 40.0%
ACCGTCCATGAATGAAAGAA+TGG - chr6_3:22381064-22381083 None:intergenic 40.0%
! CCTCTTTGGAGATGAAAAGA+AGG - chr6_3:22381101-22381120 None:intergenic 40.0%
! CCTTCTTTTCATCTCCAAAG+AGG + chr6_3:22381098-22381117 Msa0944950:intron 40.0%
TATTGTCAACATCGTAGAGG+TGG + chr6_3:22381256-22381275 Msa0944950:intron 40.0%
AGATCAGACAAATAACCCGA+AGG - chr6_3:22381313-22381332 None:intergenic 40.0%
AAGTTCTTAGTGCACAACAG+AGG + chr6_3:22381421-22381440 Msa0944950:intron 40.0%
AGTTCTTAGTGCACAACAGA+GGG + chr6_3:22381422-22381441 Msa0944950:intron 40.0%
! TCAAAGACTTGGTTGGATGC+GGG - chr6_3:22379385-22379404 None:intergenic 45.0%
! GTCAAAGACTTGGTTGGATG+CGG - chr6_3:22379386-22379405 None:intergenic 45.0%
ATCCAACCAAGTCTTTGACC+AGG + chr6_3:22379387-22379406 Msa0944950:intron 45.0%
TCCAACCAAGTCTTTGACCA+GGG + chr6_3:22379388-22379407 Msa0944950:intron 45.0%
GGCTTTGCCAACACAACATT+AGG - chr6_3:22379528-22379547 None:intergenic 45.0%
TGTTGGCAAAGCCAACTTCT+TGG + chr6_3:22379535-22379554 Msa0944950:CDS 45.0%
GTTGGCAAAGCCAACTTCTT+GGG + chr6_3:22379536-22379555 Msa0944950:CDS 45.0%
! AAAGCCAACTTCTTGGGTTG+CGG + chr6_3:22379542-22379561 Msa0944950:CDS 45.0%
! CATTTAGGGCGAGACAGAAT+GGG + chr6_3:22379625-22379644 Msa0944950:intron 45.0%
CCGCCTATCCCGAAAAAAAA+TGG + chr6_3:22379720-22379739 Msa0944950:intron 45.0%
AGTTTCTGCCTCATACAGCT+CGG - chr6_3:22379891-22379910 None:intergenic 45.0%
GTTCACTCAACGATTGCCTT+TGG + chr6_3:22379992-22380011 Msa0944950:CDS 45.0%
ATATGGAGTTCGGAACCCAA+AGG - chr6_3:22380011-22380030 None:intergenic 45.0%
! TTTGGGTTCCGAACTCCATA+TGG + chr6_3:22380010-22380029 Msa0944950:CDS 45.0%
TTGGGTTCCGAACTCCATAT+GGG + chr6_3:22380011-22380030 Msa0944950:CDS 45.0%
CGAGGTCTCGATCATTTACA+TGG + chr6_3:22380053-22380072 Msa0944950:intron 45.0%
CCCACTTCTCATTCCATTTG+TGG + chr6_3:22380077-22380096 Msa0944950:CDS 45.0%
CCCACAAATGGAATGAGAAG+TGG - chr6_3:22380081-22380100 None:intergenic 45.0%
CCGGAAAGTTTATTGGCAAC+AGG - chr6_3:22380178-22380197 None:intergenic 45.0%
TTTCCGGCCTCATATGAGAA+TGG + chr6_3:22380191-22380210 Msa0944950:CDS 45.0%
! TGGAGAATTTTCTGCATCGG+TGG + chr6_3:22380219-22380238 Msa0944950:CDS 45.0%
!! GGATTTATGTTGGCTTCGTC+GGG + chr6_3:22380446-22380465 Msa0944950:CDS 45.0%
TTGGAATCGAGAAAGTTCCG+TGG + chr6_3:22380514-22380533 Msa0944950:intron 45.0%
ATAGAGGCTAGATCGGACTA+AGG + chr6_3:22380588-22380607 Msa0944950:intron 45.0%
GAGGAAAGGCTAAGCGAAAA+AGG - chr6_3:22380739-22380758 None:intergenic 45.0%
CGTAACGGTAGAAAGAGGAA+AGG - chr6_3:22380753-22380772 None:intergenic 45.0%
CATCTCGTAACGGTAGAAAG+AGG - chr6_3:22380758-22380777 None:intergenic 45.0%
GAGGATACTGCATCTCGTAA+CGG - chr6_3:22380768-22380787 None:intergenic 45.0%
CTCTAACGTCTTTGCTTGCA+CGG + chr6_3:22380785-22380804 Msa0944950:CDS 45.0%
TGCATCTTTCCACACAGCAT+TGG + chr6_3:22380840-22380859 Msa0944950:CDS 45.0%
GGGCGATAAAGGTAAGGTAA+GGG - chr6_3:22380872-22380891 None:intergenic 45.0%
!! TTGCTCTGGGCTTTTTGTTG+GGG - chr6_3:22380943-22380962 None:intergenic 45.0%
!! CTTGCTCTGGGCTTTTTGTT+GGG - chr6_3:22380944-22380963 None:intergenic 45.0%
CAACAAAAAGCCCAGAGCAA+GGG + chr6_3:22380943-22380962 Msa0944950:intron 45.0%
AACAAAAAGCCCAGAGCAAG+GGG + chr6_3:22380944-22380963 Msa0944950:intron 45.0%
!!! GATTGGCATTGGTTTTGGTG+GGG - chr6_3:22381007-22381026 None:intergenic 45.0%
!!! CGATTGGCATTGGTTTTGGT+GGG - chr6_3:22381008-22381027 None:intergenic 45.0%
!!! TCAGCGATTGGCATTGGTTT+TGG - chr6_3:22381012-22381031 None:intergenic 45.0%
AACAGATCAGCGATTGGCAT+TGG - chr6_3:22381018-22381037 None:intergenic 45.0%
TCCACTAACAGATCAGCGAT+TGG - chr6_3:22381024-22381043 None:intergenic 45.0%
! TGTTAGTGGACAGAGCTTCT+GGG + chr6_3:22381034-22381053 Msa0944950:CDS 45.0%
TCATTCATGGACGGTCACTT+AGG + chr6_3:22381069-22381088 Msa0944950:CDS 45.0%
CATTCATGGACGGTCACTTA+GGG + chr6_3:22381070-22381089 Msa0944950:CDS 45.0%
TTTCATCTCCAAAGAGGACG+AGG + chr6_3:22381104-22381123 Msa0944950:intron 45.0%
!! TGTTTTTGCCTCGTCCTCTT+TGG - chr6_3:22381115-22381134 None:intergenic 45.0%
AAAAACAGCGTTCCGTTGTC+CGG + chr6_3:22381128-22381147 Msa0944950:intron 45.0%
ATAGCGTTCTTCAGACCGAA+GGG - chr6_3:22381194-22381213 None:intergenic 45.0%
TATAGCGTTCTTCAGACCGA+AGG - chr6_3:22381195-22381214 None:intergenic 45.0%
TGTGCATTTGACGTAACAGC+AGG + chr6_3:22381388-22381407 Msa0944950:intron 45.0%
GTTCTTAGTGCACAACAGAG+GGG + chr6_3:22381423-22381442 Msa0944950:intron 45.0%
!! GAGAGGCATTCTTCAACTTC+TGG - chr6_3:22381474-22381493 None:intergenic 45.0%
AAGAATGCCTCTCACACAGA+TGG + chr6_3:22381481-22381500 Msa0944950:CDS 45.0%
ACACAGATGGACAGCAAAGA+AGG + chr6_3:22381494-22381513 Msa0944950:CDS 45.0%
ACAGCAAAGAAGGCCTTCTA+AGG + chr6_3:22381504-22381523 Msa0944950:CDS 45.0%
CATTTGTAAGAGTCCTCCTC+AGG + chr6_3:22381543-22381562 Msa0944950:CDS 45.0%
CCAGCAAGTTTCTCCTTCAT+CGG - chr6_3:22381580-22381599 None:intergenic 45.0%
!! ACTGTAACGGATTCACCCTA+GGG - chr6_3:22381627-22381646 None:intergenic 45.0%
!! AACTGTAACGGATTCACCCT+AGG - chr6_3:22381628-22381647 None:intergenic 45.0%
ATCGCATTCCGCAACTGTAA+CGG - chr6_3:22381640-22381659 None:intergenic 45.0%
AAAGCGCAGGTAATGCCAGT+TGG + chr6_3:22379272-22379291 Msa0944950:CDS 50.0%
! CCTCTCTTTTCGTACCGCTA+GGG - chr6_3:22379316-22379335 None:intergenic 50.0%
! ACCTCTCTTTTCGTACCGCT+AGG - chr6_3:22379317-22379336 None:intergenic 50.0%
! TCCCTGGTCAAAGACTTGGT+TGG - chr6_3:22379392-22379411 None:intergenic 50.0%
CCAAGTCTTTGACCAGGGAA+CGG + chr6_3:22379393-22379412 Msa0944950:intron 50.0%
CAAGTCTTTGACCAGGGAAC+GGG + chr6_3:22379394-22379413 Msa0944950:intron 50.0%
TAATTCCCACTACCGCTGGA+AGG + chr6_3:22379418-22379437 Msa0944950:intron 50.0%
TCGGCATAGAATGAAGGGGA+TGG + chr6_3:22379501-22379520 Msa0944950:CDS 50.0%
GGATGGCCCTAATGTTGTGT+TGG + chr6_3:22379518-22379537 Msa0944950:CDS 50.0%
! AAGCCAACTTCTTGGGTTGC+GGG + chr6_3:22379543-22379562 Msa0944950:CDS 50.0%
CTGTCTCGCCCTAAATGGAA+TGG - chr6_3:22379622-22379641 None:intergenic 50.0%
CCATTCTGTCTCGCCCTAAA+TGG - chr6_3:22379627-22379646 None:intergenic 50.0%
! CCATTTAGGGCGAGACAGAA+TGG + chr6_3:22379624-22379643 Msa0944950:intron 50.0%
GTAGTCGTCGTCTGACCAAT+TGG - chr6_3:22379677-22379696 None:intergenic 50.0%
GGGGAAGTTTAGGAGAGATG+GGG - chr6_3:22379857-22379876 None:intergenic 50.0%
GGGGGAAGTTTAGGAGAGAT+GGG - chr6_3:22379858-22379877 None:intergenic 50.0%
CATCTCTCCTAAACTTCCCC+CGG + chr6_3:22379857-22379876 Msa0944950:CDS 50.0%
GTTTCTGCCTCATACAGCTC+GGG - chr6_3:22379890-22379909 None:intergenic 50.0%
TAAGCCGCACCATTACTGCT+GGG - chr6_3:22379947-22379966 None:intergenic 50.0%
TGGGTTCCGAACTCCATATG+GGG + chr6_3:22380012-22380031 Msa0944950:CDS 50.0%
TTCCGAACTCCATATGGGGA+AGG + chr6_3:22380016-22380035 Msa0944950:CDS 50.0%
CTCCTTCCCCATATGGAGTT+CGG - chr6_3:22380021-22380040 None:intergenic 50.0%
AACAACGCTCCTTCCCCATA+TGG - chr6_3:22380028-22380047 None:intergenic 50.0%
!! AAGGAGCGTTGTTGTTTCCG+AGG + chr6_3:22380035-22380054 Msa0944950:intron 50.0%
CATGAGGCGATCGTTCGTTA+GGG - chr6_3:22380126-22380145 None:intergenic 50.0%
ACATGAGGCGATCGTTCGTT+AGG - chr6_3:22380127-22380146 None:intergenic 50.0%
AACAACGAGCACGACTGAAG+TGG + chr6_3:22380307-22380326 Msa0944950:CDS 50.0%
GGAACTGGAAGTTCCAGAAC+AGG + chr6_3:22380371-22380390 Msa0944950:CDS 50.0%
ACTGGAAGTTCCAGAACAGG+CGG + chr6_3:22380374-22380393 Msa0944950:CDS 50.0%
!! TTTATGTTGGCTTCGTCGGG+AGG + chr6_3:22380449-22380468 Msa0944950:CDS 50.0%
GATCGGACTAAGGAGAGAGA+CGG + chr6_3:22380598-22380617 Msa0944950:intron 50.0%
AGGAGAGAGACGGTTGAGTA+CGG + chr6_3:22380608-22380627 Msa0944950:intron 50.0%
GTTGAGTACGGAAGCGAAAG+CGG + chr6_3:22380620-22380639 Msa0944950:intron 50.0%
GGAAGCGAAAGCGGAGATAT+AGG + chr6_3:22380629-22380648 Msa0944950:intron 50.0%
CGTGCAAGCAAAGACGTTAG+AGG - chr6_3:22380787-22380806 None:intergenic 50.0%
CTGTGTGGAAAGATGCAACG+AGG - chr6_3:22380837-22380856 None:intergenic 50.0%
CGGGCGATAAAGGTAAGGTA+AGG - chr6_3:22380873-22380892 None:intergenic 50.0%
ACCTTACCTTTATCGCCCGT+CGG + chr6_3:22380874-22380893 Msa0944950:CDS 50.0%
!! CCTTGCTCTGGGCTTTTTGT+TGG - chr6_3:22380945-22380964 None:intergenic 50.0%
CCAACAAAAAGCCCAGAGCA+AGG + chr6_3:22380942-22380961 Msa0944950:intron 50.0%
ACAAAAAGCCCAGAGCAAGG+GGG + chr6_3:22380945-22380964 Msa0944950:intron 50.0%
GGGGGGAAAGAATGCAATTC+CGG + chr6_3:22380973-22380992 Msa0944950:CDS 50.0%
! TTTTGGTGGGGCTGAGATTC+CGG - chr6_3:22380995-22381014 None:intergenic 50.0%
!!! GCGATTGGCATTGGTTTTGG+TGG - chr6_3:22381009-22381028 None:intergenic 50.0%
GCCAATCGCTGATCTGTTAG+TGG + chr6_3:22381020-22381039 Msa0944950:CDS 50.0%
! CTGTTAGTGGACAGAGCTTC+TGG + chr6_3:22381033-22381052 Msa0944950:CDS 50.0%
AAAACAGCGTTCCGTTGTCC+GGG + chr6_3:22381129-22381148 Msa0944950:intron 50.0%
AGATGAGGTTCATTGCTCGC+TGG - chr6_3:22381226-22381245 None:intergenic 50.0%
AGTGTTTGAGCGCGAGAACA+CGG + chr6_3:22381339-22381358 Msa0944950:intron 50.0%
TTGCTGTCCATCTGTGTGAG+AGG - chr6_3:22381491-22381510 None:intergenic 50.0%
! GCAAAGAAGGCCTTCTAAGG+CGG + chr6_3:22381507-22381526 Msa0944950:CDS 50.0%
CCGATGAAGGAGAAACTTGC+TGG + chr6_3:22381577-22381596 Msa0944950:CDS 50.0%
ACAAGAGGGAAGAACCCCTA+GGG + chr6_3:22381609-22381628 Msa0944950:CDS 50.0%
!! CTGTAACGGATTCACCCTAG+GGG - chr6_3:22381626-22381645 None:intergenic 50.0%
GGGTGAATCCGTTACAGTTG+CGG + chr6_3:22381629-22381648 Msa0944950:CDS 50.0%
CTCTCAGTGTGGTCAGCACT+GGG - chr6_3:22379247-22379266 None:intergenic 55.0%
TCTCTCAGTGTGGTCAGCAC+TGG - chr6_3:22379248-22379267 None:intergenic 55.0%
CGCTTTCGTCTCTCTCAGTG+TGG - chr6_3:22379258-22379277 None:intergenic 55.0%
! ACTGAGAGAGACGAAAGCGC+AGG + chr6_3:22379259-22379278 Msa0944950:CDS 55.0%
GGTAATGCCAGTTGGCGAAG+TGG + chr6_3:22379280-22379299 Msa0944950:CDS 55.0%
CTTAACGCCACTTCGCCAAC+TGG - chr6_3:22379290-22379309 None:intergenic 55.0%
GTGGCGTTAAGCATCCCTAG+CGG + chr6_3:22379299-22379318 Msa0944950:CDS 55.0%
CCCTAGCGGTACGAAAAGAG+AGG + chr6_3:22379313-22379332 Msa0944950:intron 55.0%
CCGTTCCCTGGTCAAAGACT+TGG - chr6_3:22379396-22379415 None:intergenic 55.0%
GTGGGAATTATCCCGTTCCC+TGG - chr6_3:22379408-22379427 None:intergenic 55.0%
GGGATAATTCCCACTACCGC+TGG + chr6_3:22379414-22379433 Msa0944950:intron 55.0%
CCTTCATTCTATGCCGACCC+CGG - chr6_3:22379498-22379517 None:intergenic 55.0%
CGGGGTCGGCATAGAATGAA+GGG + chr6_3:22379496-22379515 Msa0944950:CDS 55.0%
GGGGTCGGCATAGAATGAAG+GGG + chr6_3:22379497-22379516 Msa0944950:CDS 55.0%
TTAGGGCGAGACAGAATGGG+CGG + chr6_3:22379628-22379647 Msa0944950:intron 55.0%
CGTCGTCTGACCAATTGGCT+CGG - chr6_3:22379672-22379691 None:intergenic 55.0%
CGGGGGAAGTTTAGGAGAGA+TGG - chr6_3:22379859-22379878 None:intergenic 55.0%
CCTAAACTTCCCCCGGTCTT+CGG + chr6_3:22379864-22379883 Msa0944950:CDS 55.0%
AAGCCGCACCATTACTGCTG+GGG - chr6_3:22379946-22379965 None:intergenic 55.0%
CTAAGCCGCACCATTACTGC+TGG - chr6_3:22379948-22379967 None:intergenic 55.0%
CAGCAGTAATGGTGCGGCTT+AGG + chr6_3:22379946-22379965 Msa0944950:CDS 55.0%
AGGCGATCGTTCGTTAGGGA+CGG - chr6_3:22380122-22380141 None:intergenic 55.0%
TTGCTTGCACGGCTTTCGAC+CGG + chr6_3:22380796-22380815 Msa0944950:CDS 55.0%
GGGACAGAACCAATGCTGTG+TGG - chr6_3:22380852-22380871 None:intergenic 55.0%
CCTTACCTTTATCGCCCGTC+GGG + chr6_3:22380875-22380894 Msa0944950:CDS 55.0%
CAAAAAGCCCAGAGCAAGGG+GGG + chr6_3:22380946-22380965 Msa0944950:intron 55.0%
GAGGTTCATTGCTCGCTGGT+AGG - chr6_3:22381222-22381241 None:intergenic 55.0%
ATCGGACAATCTCGTGCCTG+AGG - chr6_3:22381562-22381581 None:intergenic 55.0%
GGCACGAGATTGTCCGATGA+AGG + chr6_3:22381564-22381583 Msa0944950:CDS 55.0%
!! GAGAAACTTGCTGGTTGCCG+AGG + chr6_3:22381586-22381605 Msa0944950:CDS 55.0%
GGGTTCTTCCCTCTTGTCCT+CGG - chr6_3:22381606-22381625 None:intergenic 55.0%
GACAAGAGGGAAGAACCCCT+AGG + chr6_3:22381608-22381627 Msa0944950:CDS 55.0%
TGGGTGTAAGCCTCGCTGCT+CGG + chr6_3:22379216-22379235 Msa0944950:CDS 60.0%
GCTTCCCAAAAAGCCAGCCC+CGG + chr6_3:22379471-22379490 Msa0944950:CDS 60.0%
CTTCCCAAAAAGCCAGCCCC+GGG + chr6_3:22379472-22379491 Msa0944950:CDS 60.0%
CCGGGGTCGGCATAGAATGA+AGG + chr6_3:22379495-22379514 Msa0944950:CDS 60.0%
! CCAACTTCTTGGGTTGCGGG+CGG + chr6_3:22379546-22379565 Msa0944950:CDS 60.0%
CTCTTAGTTACGCTGCGCCC+CGG - chr6_3:22379597-22379616 None:intergenic 60.0%
TAGGGCGAGACAGAATGGGC+GGG + chr6_3:22379629-22379648 Msa0944950:intron 60.0%
GGTCTGGTGTCCGAGCCAAT+TGG + chr6_3:22379659-22379678 Msa0944950:intron 60.0%
CCGAAGACCGGGGGAAGTTT+AGG - chr6_3:22379867-22379886 None:intergenic 60.0%
ATACAGCTCGGGCCGAAGAC+CGG - chr6_3:22379879-22379898 None:intergenic 60.0%
TCTTCGGCCCGAGCTGTATG+AGG + chr6_3:22379880-22379899 Msa0944950:CDS 60.0%
GCAGAAACTCGCCCCACGTA+CGG + chr6_3:22379902-22379921 Msa0944950:CDS 60.0%
AACTCGCCCCACGTACGGTT+CGG + chr6_3:22379907-22379926 Msa0944950:CDS 60.0%
ATTACTGCTGGGGTGGGGCT+CGG - chr6_3:22379936-22379955 None:intergenic 60.0%
GCACCATTACTGCTGGGGTG+GGG - chr6_3:22379941-22379960 None:intergenic 60.0%
CGCACCATTACTGCTGGGGT+GGG - chr6_3:22379942-22379961 None:intergenic 60.0%
CCACCCCAGCAGTAATGGTG+CGG + chr6_3:22379940-22379959 Msa0944950:CDS 60.0%
GAAGTTCCAGAACAGGCGGC+TGG + chr6_3:22380378-22380397 Msa0944950:CDS 60.0%
GGTATACCAGCCGCCTGTTC+TGG - chr6_3:22380387-22380406 None:intergenic 60.0%
TGCTTGCACGGCTTTCGACC+GGG + chr6_3:22380797-22380816 Msa0944950:CDS 60.0%
GAGGAAACCTCTTCCCGTCC+CGG - chr6_3:22380818-22380837 None:intergenic 60.0%
CCCGACGGGCGATAAAGGTA+AGG - chr6_3:22380878-22380897 None:intergenic 60.0%
ATGCGAACCTTGACGCCCGA+CGG - chr6_3:22380893-22380912 None:intergenic 60.0%
! TTCCGTTGTCCGGGTGCTGT+TGG + chr6_3:22381138-22381157 Msa0944950:intron 60.0%
GTCCAACAGCACCCGGACAA+CGG - chr6_3:22381143-22381162 None:intergenic 60.0%
!! GTTGTCCGGGTGCTGTTGGA+CGG + chr6_3:22381142-22381161 Msa0944950:intron 60.0%
!! GGACGGACGGACTATTCTGC+TGG + chr6_3:22381159-22381178 Msa0944950:intron 60.0%
!! GGACGGACTATTCTGCTGGC+AGG + chr6_3:22381163-22381182 Msa0944950:intron 60.0%
TGCTGGCAGGTGATGCCCTT+CGG + chr6_3:22381176-22381195 Msa0944950:intron 60.0%
!! AGGCCTTCTAAGGCGGACTC+TGG + chr6_3:22381514-22381533 Msa0944950:CDS 60.0%
GAGCCAGAGTCCGCCTTAGA+AGG - chr6_3:22381520-22381539 None:intergenic 60.0%
GGACAATCTCGTGCCTGAGG+AGG - chr6_3:22381559-22381578 None:intergenic 60.0%
! TGCTGGTTGCCGAGGACAAG+AGG + chr6_3:22381594-22381613 Msa0944950:CDS 60.0%
GCTGGTTGCCGAGGACAAGA+GGG + chr6_3:22381595-22381614 Msa0944950:CDS 60.0%
CTGGGTGTTTCCGAGCAGCG+AGG - chr6_3:22379229-22379248 None:intergenic 65.0%
TACGTCCGTACCGCTCCTCG+CGG + chr6_3:22379352-22379371 Msa0944950:intron 65.0%
CTACTCCGCGAGGAGCGGTA+CGG - chr6_3:22379360-22379379 None:intergenic 65.0%
GGGATCTACTCCGCGAGGAG+CGG - chr6_3:22379365-22379384 None:intergenic 65.0%
GATGCGGGATCTACTCCGCG+AGG - chr6_3:22379370-22379389 None:intergenic 65.0%
!! GCTGGCCTTCCAGCGGTAGT+GGG - chr6_3:22379426-22379445 None:intergenic 65.0%
ACTACCGCTGGAAGGCCAGC+CGG + chr6_3:22379426-22379445 Msa0944950:intron 65.0%
ATTCTATGCCGACCCCGGCC+CGG - chr6_3:22379493-22379512 None:intergenic 65.0%
CCGCCCGCAACCCAAGAAGT+TGG - chr6_3:22379549-22379568 None:intergenic 65.0%
ACAGAATGGGCGGGCACGAG+CGG + chr6_3:22379638-22379657 Msa0944950:intron 65.0%
AAGCTTATCCCCGCCCCGAC+CGG + chr6_3:22379817-22379836 Msa0944950:intron 65.0%
TACAGCTCGGGCCGAAGACC+GGG - chr6_3:22379878-22379897 None:intergenic 65.0%
TCGGCCTCCGAACCGTACGT+GGG - chr6_3:22379917-22379936 None:intergenic 65.0%
GAGCCCCACCCCAGCAGTAA+TGG + chr6_3:22379935-22379954 Msa0944950:CDS 65.0%
CCGCACCATTACTGCTGGGG+TGG - chr6_3:22379943-22379962 None:intergenic 65.0%
TGCACGGCTTTCGACCGGGA+CGG + chr6_3:22380801-22380820 Msa0944950:CDS 65.0%
CTTTCGACCGGGACGGGAAG+AGG + chr6_3:22380808-22380827 Msa0944950:CDS 65.0%
TGACGCCCGACGGGCGATAA+AGG - chr6_3:22380883-22380902 None:intergenic 65.0%
TTATCGCCCGTCGGGCGTCA+AGG + chr6_3:22380883-22380902 Msa0944950:CDS 65.0%
TGCGAACCTTGACGCCCGAC+GGG - chr6_3:22380892-22380911 None:intergenic 65.0%
!! TCCGGGTGCTGTTGGACGGA+CGG + chr6_3:22381146-22381165 Msa0944950:intron 65.0%
TCCGTCCGTCCAACAGCACC+CGG - chr6_3:22381150-22381169 None:intergenic 65.0%
!! GGCTGGCCTTCCAGCGGTAG+TGG - chr6_3:22379427-22379446 None:intergenic 70.0%
CTACCGCTGGAAGGCCAGCC+GGG + chr6_3:22379427-22379446 Msa0944950:intron 70.0%
!!! CGGCCCGGGGCTGGCTTTTT+GGG - chr6_3:22379478-22379497 None:intergenic 70.0%
CCAAAAAGCCAGCCCCGGGC+CGG + chr6_3:22379476-22379495 Msa0944950:CDS 70.0%
CAAAAAGCCAGCCCCGGGCC+GGG + chr6_3:22379477-22379496 Msa0944950:CDS 70.0%
AAAAAGCCAGCCCCGGGCCG+GGG + chr6_3:22379478-22379497 Msa0944950:CDS 70.0%
TTCTATGCCGACCCCGGCCC+GGG - chr6_3:22379492-22379511 None:intergenic 70.0%
GGGTTGCGGGCGGAGAAGAG+CGG + chr6_3:22379556-22379575 Msa0944950:CDS 70.0%
GGGCGGAGAAGAGCGGACGT+GGG + chr6_3:22379563-22379582 Msa0944950:intron 70.0%
GGCGGAGAAGAGCGGACGTG+GGG + chr6_3:22379564-22379583 Msa0944950:intron 70.0%
GCGGACGTGGGGACTCAGAC+CGG + chr6_3:22379575-22379594 Msa0944950:intron 70.0%
CGGACGTGGGGACTCAGACC+GGG + chr6_3:22379576-22379595 Msa0944950:intron 70.0%
GGACGTGGGGACTCAGACCG+GGG + chr6_3:22379577-22379596 Msa0944950:intron 70.0%
AGACCCAGCAGCTGCCGGTC+GGG - chr6_3:22379834-22379853 None:intergenic 70.0%
GAGACCCAGCAGCTGCCGGT+CGG - chr6_3:22379835-22379854 None:intergenic 70.0%
TGGGGAGACCCAGCAGCTGC+CGG - chr6_3:22379839-22379858 None:intergenic 70.0%
ACAGCTCGGGCCGAAGACCG+GGG - chr6_3:22379877-22379896 None:intergenic 70.0%
! TCGCCCCACGTACGGTTCGG+AGG + chr6_3:22379910-22379929 Msa0944950:CDS 70.0%
CGGCCTCCGAACCGTACGTG+GGG - chr6_3:22379916-22379935 None:intergenic 70.0%
CTCGGCCTCCGAACCGTACG+TGG - chr6_3:22379918-22379937 None:intergenic 70.0%
GCACGGCTTTCGACCGGGAC+GGG + chr6_3:22380802-22380821 Msa0944950:CDS 70.0%
AAGCCCAGAGCAAGGGGGGC+TGG + chr6_3:22380950-22380969 Msa0944950:intron 70.0%
AGCCCAGAGCAAGGGGGGCT+GGG + chr6_3:22380951-22380970 Msa0944950:intron 70.0%
TTCCCACCGCGCTCACGGCC+CGG - chr6_3:22379448-22379467 None:intergenic 75.0%
GGCCGTGAGCGCGGTGGGAA+CGG + chr6_3:22379448-22379467 Msa0944950:CDS 75.0%
GCCGTGAGCGCGGTGGGAAC+GGG + chr6_3:22379449-22379468 Msa0944950:CDS 75.0%
GCCCGTTCCCACCGCGCTCA+CGG - chr6_3:22379453-22379472 None:intergenic 75.0%
!!! CCGGCCCGGGGCTGGCTTTT+TGG - chr6_3:22379479-22379498 None:intergenic 75.0%
TCTATGCCGACCCCGGCCCG+GGG - chr6_3:22379491-22379510 None:intergenic 75.0%
CGGGCGGAGAAGAGCGGACG+TGG + chr6_3:22379562-22379581 Msa0944950:intron 75.0%
ATGGGCGGGCACGAGCGGTC+TGG + chr6_3:22379643-22379662 Msa0944950:intron 75.0%
GACCCAGCAGCTGCCGGTCG+GGG - chr6_3:22379833-22379852 None:intergenic 75.0%
CAGCTCGGGCCGAAGACCGG+GGG - chr6_3:22379876-22379895 None:intergenic 75.0%
GCCCAGAGCAAGGGGGGCTG+GGG + chr6_3:22380952-22380971 Msa0944950:intron 75.0%
CCCCCAGCCCCCCTTGCTCT+GGG - chr6_3:22380956-22380975 None:intergenic 75.0%
CCCAGAGCAAGGGGGGCTGG+GGG + chr6_3:22380953-22380972 Msa0944950:CDS 75.0%
CCAGAGCAAGGGGGGCTGGG+GGG + chr6_3:22380954-22380973 Msa0944950:CDS 75.0%
CAGAGCAAGGGGGGCTGGGG+GGG + chr6_3:22380955-22380974 Msa0944950:CDS 75.0%
AGAGCAAGGGGGGCTGGGGG+GGG + chr6_3:22380956-22380975 Msa0944950:CDS 75.0%
!!! CGGCCCGGCTGGCCTTCCAG+CGG - chr6_3:22379433-22379452 None:intergenic 80.0%
! AGCCGGGCCGTGAGCGCGGT+GGG + chr6_3:22379443-22379462 Msa0944950:CDS 80.0%
! AGCAGCTGCCGGTCGGGGCG+GGG - chr6_3:22379828-22379847 None:intergenic 80.0%
! CAGCAGCTGCCGGTCGGGGC+GGG - chr6_3:22379829-22379848 None:intergenic 80.0%
! CCAGCAGCTGCCGGTCGGGG+CGG - chr6_3:22379830-22379849 None:intergenic 80.0%
! CGCCCCGACCGGCAGCTGCT+GGG + chr6_3:22379828-22379847 Msa0944950:CDS 80.0%
! CCCCCCAGCCCCCCTTGCTC+TGG - chr6_3:22380957-22380976 None:intergenic 80.0%
! GGCCAGCCGGGCCGTGAGCG+CGG + chr6_3:22379439-22379458 Msa0944950:intron 85.0%
! CACCGCGCTCACGGCCCGGC+TGG - chr6_3:22379444-22379463 None:intergenic 85.0%
! CAGCCGGGCCGTGAGCGCGG+TGG + chr6_3:22379442-22379461 Msa0944950:CDS 85.0%
! AGCCAGCCCCGGGCCGGGGT+CGG + chr6_3:22379482-22379501 Msa0944950:CDS 85.0%
! CCGCCCCGACCGGCAGCTGC+TGG + chr6_3:22379827-22379846 Msa0944950:CDS 85.0%
! TGCCGACCCCGGCCCGGGGC+TGG - chr6_3:22379487-22379506 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 22379209 22381669 22379209 ID=Msa0944950;Name=Msa0944950
chr6_3 mRNA 22379209 22381669 22379209 ID=Msa0944950-mRNA-1;Parent=Msa0944950;Name=Msa0944950-mRNA-1;_AED=0.24;_eAED=0.32;_QI=0|0|0|1|0|0.12|8|0|475
chr6_3 exon 22379209 22379320 22379209 ID=Msa0944950-mRNA-1:exon:6559;Parent=Msa0944950-mRNA-1
chr6_3 exon 22379440 22379580 22379440 ID=Msa0944950-mRNA-1:exon:6560;Parent=Msa0944950-mRNA-1
chr6_3 exon 22379820 22380041 22379820 ID=Msa0944950-mRNA-1:exon:6561;Parent=Msa0944950-mRNA-1
chr6_3 exon 22380057 22380279 22380057 ID=Msa0944950-mRNA-1:exon:6562;Parent=Msa0944950-mRNA-1
chr6_3 exon 22380295 22380532 22380295 ID=Msa0944950-mRNA-1:exon:6563;Parent=Msa0944950-mRNA-1
chr6_3 exon 22380781 22380904 22380781 ID=Msa0944950-mRNA-1:exon:6564;Parent=Msa0944950-mRNA-1
chr6_3 exon 22380953 22381091 22380953 ID=Msa0944950-mRNA-1:exon:6565;Parent=Msa0944950-mRNA-1
chr6_3 exon 22381441 22381669 22381441 ID=Msa0944950-mRNA-1:exon:6566;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22379209 22379320 22379209 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22379440 22379580 22379440 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22379820 22380041 22379820 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22380057 22380279 22380057 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22380295 22380532 22380295 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22380781 22380904 22380781 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22380953 22381091 22380953 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
chr6_3 CDS 22381441 22381669 22381441 ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1
Gene Sequence

>Msa0944950

ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGAGACGAAAGCGCAGGTAATGCCAGTTGGCGAAGTGGCGTTAAGCATCCCTAGCGGCCAGCCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAAGCCAGCCCCGGGCCGGGGTCGGCATAGAATGAAGGGGATGGCCCTAATGTTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCGGAGAAGAGCGGACCTTATCCCCGCCCCGACCGGCAGCTGCTGGGTCTCCCCATCTCTCCTAAACTTCCCCCGGTCTTCGGCCCGAGCTGTATGAGGCAGAAACTCGCCCCACGTACGGTTCGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCGGCTTAGGTCAACTAACACAAAGAAGATACAGTTCACTCAACGATTGCCTTTGGGTTCCGAACTCCATATGGGGAAGGAGCGTCTCGATCATTTACATGGACCCACTTCTCATTCCATTTGTGGGAATTTGATGATCTATAAACCGTCCCTAACGAACGATCGCCTCATGTTTGAGCATGATGAATCACTTCGTGCCGACCTGTTGCCAATAAACTTTCCGGCCTCATATGAGAATGGAAAACTGGAGAATTTTCTGCATCGGTGGATGAAGAATAGCGAAAATAATAATTTATGGTTGACCATATACTTTAGAGAAACAACGAGCACGACTGAAGTGGCTATACATACAAATCCATTTACGGATAGATATGCTTCGATTGGAACTGGAAGTTCCAGAACAGGCGGCTGGTATACCACCATAATTAAACTGCCTTTTATTTTTTTTATTCGGATAGGATTTATGTTGGCTTCGTCGGGAGGCTCGCGTAGTTTGTTACGTCAGCTCCAAAAGGATAAGTTGCGTTGGAATCGAGAAAGTTCCTATCCTCTAACGTCTTTGCTTGCACGGCTTTCGACCGGGACGGGAAGAGGTTTCCTCGTTGCATCTTTCCACACAGCATTGGTTCTGTCCCTTACCTTACCTTTATCGCCCGTCGGGCGTCAAGCCCAGAGCAAGGGGGGCTGGGGGGGGAAAGAATGCAATTCCGGAATCTCAGCCCCACCAAAACCAATGCCAATCGCTGATCTGTTAGTGGACAGAGCTTCTGGGCAATCCATTCTTTCATTCATGGACGGTCACTTAGGAGGGGTTGAAATTAACAATAATAAATCGGGCCAGAAGTTGAAGAATGCCTCTCACACAGATGGACAGCAAAGAAGGCCTTCTAAGGCGGACTCTGGCTCTTTCATTTGTAAGAGTCCTCCTCAGGCACGAGATTGTCCGATGAAGGAGAAACTTGCTGGTTGCCGAGGACAAGAGGGAAGAACCCCTAGGGTGAATCCGTTACAGTTGCGGAATGCGATCACCCATTAG

Protein sequence

>Msa0944950

MRMGVSLAARKHPVLTTLRETKAQVMPVGEVALSIPSGQPGRERGGNGLPKKPAPGRGRHRMKGMALMLCWQSQLLGLRAEKSGPYPRPDRQLLGLPISPKLPPVFGPSCMRQKLAPRTVRRPSPTPAVMVRLRSTNTKKIQFTQRLPLGSELHMGKERLDHLHGPTSHSICGNLMIYKPSLTNDRLMFEHDESLRADLLPINFPASYENGKLENFLHRWMKNSENNNLWLTIYFRETTSTTEVAIHTNPFTDRYASIGTGSSRTGGWYTTIIKLPFIFFIRIGFMLASSGGSRSLLRQLQKDKLRWNRESSYPLTSLLARLSTGTGRGFLVASFHTALVLSLTLPLSPVGRQAQSKGGWGGKECNSGISAPPKPMPIADLLVDRASGQSILSFMDGHLGGVEINNNKSGQKLKNASHTDGQQRRPSKADSGSFICKSPPQARDCPMKEKLAGCRGQEGRTPRVNPLQLRNAITH*