Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0944950 | sp|P93286|CCMFC_ARATH | 79.365 | 189 | 29 | 2 | 130 | 308 | 254 | 442 | 5.88e-96 | 299 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0944950 | A0A072TTM0 | 76.056 | 568 | 33 | 9 | 7 | 475 | 297 | 860 | 0.0 | 810 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0069500 | Msa0944950 | 0.820765 | 5.769726e-53 | -8.615850e-47 |
Msa0908820 | Msa0944950 | 0.957293 | 3.848554e-115 | -8.615850e-47 |
Msa0908850 | Msa0944950 | 0.803196 | 3.911921e-49 | -8.615850e-47 |
Msa0920000 | Msa0944950 | 0.834009 | 3.840572e-56 | -8.615850e-47 |
Msa0920060 | Msa0944950 | 0.848128 | 7.465778e-60 | -8.615850e-47 |
Msa0944920 | Msa0944950 | 0.802011 | 6.867927e-49 | -8.615850e-47 |
Msa0944940 | Msa0944950 | 0.807671 | 4.510874e-50 | -8.615850e-47 |
Msa0944950 | Msa0983160 | 0.986049 | 1.659259e-165 | -8.615850e-47 |
Msa0944950 | Msa0983170 | 0.821436 | 4.040815e-53 | -8.615850e-47 |
Msa0944950 | Msa0983190 | 0.808735 | 2.676629e-50 | -8.615850e-47 |
Msa0944950 | Msa0983300 | 0.845960 | 2.931221e-59 | -8.615850e-47 |
Msa0944950 | Msa0983350 | 0.839832 | 1.251330e-57 | -8.615850e-47 |
Msa0944950 | Msa0983460 | 0.802446 | 5.589860e-49 | -8.615850e-47 |
Msa0944950 | Msa0983520 | 0.801134 | 1.039164e-48 | -8.615850e-47 |
Msa0944950 | Msa0983540 | 0.811165 | 8.023289e-51 | -8.615850e-47 |
Msa0944950 | Msa0983550 | 0.988782 | 2.177212e-175 | -8.615850e-47 |
Msa0944950 | Msa1391970 | 0.837367 | 5.419131e-57 | -8.615850e-47 |
Msa0944950 | Msa1392030 | 0.827580 | 1.446425e-54 | -8.615850e-47 |
Msa0944950 | Msa1392160 | 0.826945 | 2.053102e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0944950 | MtrunA17_MTg0491381 | 94.340 | 212 | 2 | 2 | 111 | 312 | 1 | 212 | 3.61e-142 | 407 |
Msa0944950 | MtrunA17_Chr6g0457311 | 93.158 | 190 | 3 | 2 | 133 | 312 | 258 | 447 | 9.17e-120 | 358 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0944950 | ATMG00180.1 | 81.865 | 193 | 25 | 2 | 130 | 312 | 254 | 446 | 2.39e-103 | 316 |
Find 159 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGCGAAAATAATAATTTA+TGG | 0.188271 | 6_3:+22380249 | Msa0944950:CDS |
CTGTTAGTGGACAGAGCTTC+TGG | 0.208328 | 6_3:+22381033 | Msa0944950:CDS |
TATGAGGCCGGAAAGTTTAT+TGG | 0.241442 | 6_3:-22380182 | None:intergenic |
AATAAAAGGCAGTTTAATTA+TGG | 0.257005 | 6_3:-22380408 | None:intergenic |
GGTATACCAGCCGCCTGTTC+TGG | 0.261255 | 6_3:-22380384 | None:intergenic |
CCGCCCCGACCGGCAGCTGC+TGG | 0.271520 | 6_3:+22379827 | Msa0944950:CDS |
TCAGCGATTGGCATTGGTTT+TGG | 0.278134 | 6_3:-22381009 | None:intergenic |
TTCTATGCCGACCCCGGCCC+GGG | 0.278863 | 6_3:-22379489 | None:intergenic |
CCTGTTGCCAATAAACTTTC+CGG | 0.284972 | 6_3:+22380175 | Msa0944950:CDS |
GGCTTTGCCAACACAACATT+AGG | 0.291533 | 6_3:-22379525 | None:intergenic |
GAAGCATATCTATCCGTAAA+TGG | 0.301221 | 6_3:-22380344 | None:intergenic |
GAGAGGCATTCTTCAACTTC+TGG | 0.301504 | 6_3:-22381471 | None:intergenic |
GCAATCCATTCTTTCATTCA+TGG | 0.301920 | 6_3:+22381056 | Msa0944950:CDS |
CAGCAGCTGCCGGTCGGGGC+GGG | 0.304794 | 6_3:-22379826 | None:intergenic |
GCCGTGAGCGCGGTGGGAAC+GGG | 0.316107 | 6_3:+22379449 | Msa0944950:CDS |
TCCAACGCAACTTATCCTTT+TGG | 0.321802 | 6_3:-22380496 | None:intergenic |
TGAAATTAACAATAATAAAT+CGG | 0.322581 | 6_3:+22381447 | Msa0944950:CDS |
GGCCGTGAGCGCGGTGGGAA+CGG | 0.322985 | 6_3:+22379448 | Msa0944950:CDS |
TCTCTCAGTGTGGTCAGCAC+TGG | 0.333171 | 6_3:-22379245 | None:intergenic |
AAGCCAACTTCTTGGGTTGC+GGG | 0.342786 | 6_3:+22379543 | Msa0944950:CDS |
TGTTGGCAAAGCCAACTTCT+TGG | 0.342955 | 6_3:+22379535 | Msa0944950:CDS |
ACATGAGGCGATCGTTCGTT+AGG | 0.352912 | 6_3:-22380124 | None:intergenic |
AGACCCAGCAGCTGCCGGTC+GGG | 0.354277 | 6_3:-22379831 | None:intergenic |
CCCACTTCTCATTCCATTTG+TGG | 0.355708 | 6_3:+22380077 | Msa0944950:CDS |
ATTACTGCTGGGGTGGGGCT+CGG | 0.356446 | 6_3:-22379933 | None:intergenic |
GTTCACTCAACGATTGCCTT+TGG | 0.367519 | 6_3:+22379992 | Msa0944950:CDS |
GAGCCAGAGTCCGCCTTAGA+AGG | 0.372563 | 6_3:-22381517 | None:intergenic |
CTCTCAGTGTGGTCAGCACT+GGG | 0.376688 | 6_3:-22379244 | None:intergenic |
CAGCAGTAATGGTGCGGCTT+AGG | 0.383155 | 6_3:+22379946 | Msa0944950:CDS |
GATCATCAAATTCCCACAAA+TGG | 0.389159 | 6_3:-22380090 | None:intergenic |
TTTGGGTTCCGAACTCCATA+TGG | 0.390141 | 6_3:+22380010 | Msa0944950:CDS |
TATACATACAAATCCATTTA+CGG | 0.398392 | 6_3:+22380331 | Msa0944950:CDS |
TTCACTCAACGATTGCCTTT+GGG | 0.400692 | 6_3:+22379993 | Msa0944950:CDS |
CTTAACGCCACTTCGCCAAC+TGG | 0.402672 | 6_3:-22379287 | None:intergenic |
AAAGCCAACTTCTTGGGTTG+CGG | 0.404798 | 6_3:+22379542 | Msa0944950:CDS |
GGATTTATGTTGGCTTCGTC+GGG | 0.406463 | 6_3:+22380446 | Msa0944950:CDS |
TTGCTTGCACGGCTTTCGAC+CGG | 0.410329 | 6_3:+22380796 | Msa0944950:CDS |
AGGATTTATGTTGGCTTCGT+CGG | 0.413029 | 6_3:+22380445 | Msa0944950:CDS |
GACCCAGCAGCTGCCGGTCG+GGG | 0.413579 | 6_3:-22379830 | None:intergenic |
CCACTTCTCATTCCATTTGT+GGG | 0.416058 | 6_3:+22380078 | Msa0944950:CDS |
ATTCTATGCCGACCCCGGCC+CGG | 0.419460 | 6_3:-22379490 | None:intergenic |
CTTTCGACCGGGACGGGAAG+AGG | 0.420223 | 6_3:+22380808 | Msa0944950:CDS |
CGAGGTCTCGATCATTTACA+TGG | 0.420959 | 6_3:+22380053 | Msa0944950:intron |
ACAGCAAAGAAGGCCTTCTA+AGG | 0.428985 | 6_3:+22381504 | Msa0944950:CDS |
AGATATGCTTCGATTGGAAC+TGG | 0.429623 | 6_3:+22380356 | Msa0944950:CDS |
CGTGCAAGCAAAGACGTTAG+AGG | 0.430977 | 6_3:-22380784 | None:intergenic |
GCTTTGCCAACACAACATTA+GGG | 0.431283 | 6_3:-22379524 | None:intergenic |
GTTGGCAAAGCCAACTTCTT+GGG | 0.432759 | 6_3:+22379536 | Msa0944950:CDS |
CCGGAAAGTTTATTGGCAAC+AGG | 0.434595 | 6_3:-22380175 | None:intergenic |
ATACAGCTCGGGCCGAAGAC+CGG | 0.442080 | 6_3:-22379876 | None:intergenic |
CTCATATGAGAATGGAAAAC+TGG | 0.445029 | 6_3:+22380199 | Msa0944950:CDS |
TTCCCACCGCGCTCACGGCC+CGG | 0.445440 | 6_3:-22379445 | None:intergenic |
CGCACCATTACTGCTGGGGT+GGG | 0.445863 | 6_3:-22379939 | None:intergenic |
CTACCGCTGGAAGGCCAGCC+GGG | 0.449228 | 6_3:+22379427 | Msa0944950:intron |
CATTCATGGACGGTCACTTA+GGG | 0.451324 | 6_3:+22381070 | Msa0944950:CDS |
GCCAATCGCTGATCTGTTAG+TGG | 0.452923 | 6_3:+22381020 | Msa0944950:CDS |
GAAATTAACAATAATAAATC+GGG | 0.458057 | 6_3:+22381448 | Msa0944950:CDS |
CCGATGAAGGAGAAACTTGC+TGG | 0.458697 | 6_3:+22381577 | Msa0944950:CDS |
CCGCACCATTACTGCTGGGG+TGG | 0.460417 | 6_3:-22379940 | None:intergenic |
ACGGATAGATATGCTTCGAT+TGG | 0.460582 | 6_3:+22380350 | Msa0944950:CDS |
TCATTCATGGACGGTCACTT+AGG | 0.462564 | 6_3:+22381069 | Msa0944950:CDS |
AACAACGCTCCTTCCCCATA+TGG | 0.463316 | 6_3:-22380025 | None:intergenic |
GGGTTCTTCCCTCTTGTCCT+CGG | 0.463897 | 6_3:-22381603 | None:intergenic |
CTCCTTCCCCATATGGAGTT+CGG | 0.467009 | 6_3:-22380018 | None:intergenic |
CTCTAACGTCTTTGCTTGCA+CGG | 0.470171 | 6_3:+22380785 | Msa0944950:CDS |
AACAGATCAGCGATTGGCAT+TGG | 0.472540 | 6_3:-22381015 | None:intergenic |
AACTCGCCCCACGTACGGTT+CGG | 0.472758 | 6_3:+22379907 | Msa0944950:CDS |
CCAGCAGCTGCCGGTCGGGG+CGG | 0.473246 | 6_3:-22379827 | None:intergenic |
CATTTGTAAGAGTCCTCCTC+AGG | 0.476570 | 6_3:+22381543 | Msa0944950:CDS |
GAGACCCAGCAGCTGCCGGT+CGG | 0.477652 | 6_3:-22379832 | None:intergenic |
TGCTTGCACGGCTTTCGACC+GGG | 0.478724 | 6_3:+22380797 | Msa0944950:CDS |
ACTACCGCTGGAAGGCCAGC+CGG | 0.483155 | 6_3:+22379426 | Msa0944950:intron |
AAGCTTATCCCCGCCCCGAC+CGG | 0.485515 | 6_3:+22379817 | Msa0944950:intron |
TGTTAGTGGACAGAGCTTCT+GGG | 0.489545 | 6_3:+22381034 | Msa0944950:CDS |
TTGGGTTCCGAACTCCATAT+GGG | 0.491526 | 6_3:+22380011 | Msa0944950:CDS |
ACCTTACCTTTATCGCCCGT+CGG | 0.491998 | 6_3:+22380874 | Msa0944950:CDS |
TGCATCTTTCCACACAGCAT+TGG | 0.492653 | 6_3:+22380840 | Msa0944950:CDS |
AGCAGACGTAGGCTTCTAAT+GGG | 0.496092 | 6_3:-22381662 | None:intergenic |
CAGCCGGGCCGTGAGCGCGG+TGG | 0.498669 | 6_3:+22379442 | Msa0944950:CDS |
AAAAGGCAGTTTAATTATGG+TGG | 0.498772 | 6_3:-22380405 | None:intergenic |
TGCACGGCTTTCGACCGGGA+CGG | 0.500492 | 6_3:+22380801 | Msa0944950:CDS |
TCTTCGGCCCGAGCTGTATG+AGG | 0.501176 | 6_3:+22379880 | Msa0944950:CDS |
CCGCCCGCAACCCAAGAAGT+TGG | 0.504276 | 6_3:-22379546 | None:intergenic |
TATTCGGATAGGATTTATGT+TGG | 0.504584 | 6_3:+22380436 | Msa0944950:CDS |
CTAAGCCGCACCATTACTGC+TGG | 0.504746 | 6_3:-22379945 | None:intergenic |
ACACAGATGGACAGCAAAGA+AGG | 0.509516 | 6_3:+22381494 | Msa0944950:CDS |
AGGCCTTCTAAGGCGGACTC+TGG | 0.509544 | 6_3:+22381514 | Msa0944950:CDS |
GAGCCCCACCCCAGCAGTAA+TGG | 0.510043 | 6_3:+22379935 | Msa0944950:CDS |
TGCGAACCTTGACGCCCGAC+GGG | 0.510569 | 6_3:-22380889 | None:intergenic |
AGTTTCTGCCTCATACAGCT+CGG | 0.515951 | 6_3:-22379888 | None:intergenic |
TGGGGAGACCCAGCAGCTGC+CGG | 0.516111 | 6_3:-22379836 | None:intergenic |
GGAACTGGAAGTTCCAGAAC+AGG | 0.517306 | 6_3:+22380371 | Msa0944950:CDS |
CCTTACCTTTATCGCCCGTC+GGG | 0.525411 | 6_3:+22380875 | Msa0944950:CDS |
CCAGCAAGTTTCTCCTTCAT+CGG | 0.526011 | 6_3:-22381577 | None:intergenic |
CATGAGGCGATCGTTCGTTA+GGG | 0.530158 | 6_3:-22380123 | None:intergenic |
ACCGTCCATGAATGAAAGAA+TGG | 0.534673 | 6_3:-22381061 | None:intergenic |
TTTGTTACGTCAGCTCCAAA+AGG | 0.535085 | 6_3:+22380481 | Msa0944950:CDS |
GCACCATTACTGCTGGGGTG+GGG | 0.538302 | 6_3:-22379938 | None:intergenic |
TTTCCGGCCTCATATGAGAA+TGG | 0.538939 | 6_3:+22380191 | Msa0944950:CDS |
CGGGCGATAAAGGTAAGGTA+AGG | 0.541179 | 6_3:-22380870 | None:intergenic |
GGCACGAGATTGTCCGATGA+AGG | 0.542322 | 6_3:+22381564 | Msa0944950:CDS |
CCTTCATTCTATGCCGACCC+CGG | 0.542373 | 6_3:-22379495 | None:intergenic |
TCCATTCTTTCATTCATGGA+CGG | 0.545247 | 6_3:+22381060 | Msa0944950:CDS |
CATCTCTCCTAAACTTCCCC+CGG | 0.547799 | 6_3:+22379857 | Msa0944950:CDS |
GTTTCTGCCTCATACAGCTC+GGG | 0.549518 | 6_3:-22379887 | None:intergenic |
GAGGAAACCTCTTCCCGTCC+CGG | 0.552826 | 6_3:-22380815 | None:intergenic |
AACTGTAACGGATTCACCCT+AGG | 0.553495 | 6_3:-22381625 | None:intergenic |
TTGCTGTCCATCTGTGTGAG+AGG | 0.557091 | 6_3:-22381488 | None:intergenic |
TGGGTGTAAGCCTCGCTGCT+CGG | 0.557420 | 6_3:+22379216 | Msa0944950:CDS |
TGCTGGTTGCCGAGGACAAG+AGG | 0.565924 | 6_3:+22381594 | Msa0944950:CDS |
CGGGGTCGGCATAGAATGAA+GGG | 0.567642 | 6_3:+22379496 | Msa0944950:CDS |
TTTATGTTGGCTTCGTCGGG+AGG | 0.568263 | 6_3:+22380449 | Msa0944950:CDS |
GCAGAAACTCGCCCCACGTA+CGG | 0.568645 | 6_3:+22379902 | Msa0944950:CDS |
TTTCCATTCTCATATGAGGC+CGG | 0.569642 | 6_3:-22380194 | None:intergenic |
GGGTGAATCCGTTACAGTTG+CGG | 0.572733 | 6_3:+22381629 | Msa0944950:CDS |
AGGCGATCGTTCGTTAGGGA+CGG | 0.574187 | 6_3:-22380119 | None:intergenic |
TAAGCCGCACCATTACTGCT+GGG | 0.575414 | 6_3:-22379944 | None:intergenic |
CCCACAAATGGAATGAGAAG+TGG | 0.576883 | 6_3:-22380078 | None:intergenic |
ACTGTAACGGATTCACCCTA+GGG | 0.580403 | 6_3:-22381624 | None:intergenic |
GAGAAACTTGCTGGTTGCCG+AGG | 0.584163 | 6_3:+22381586 | Msa0944950:CDS |
AAGAATGCCTCTCACACAGA+TGG | 0.589254 | 6_3:+22381481 | Msa0944950:CDS |
GGACAATCTCGTGCCTGAGG+AGG | 0.591046 | 6_3:-22381556 | None:intergenic |
AACAACGAGCACGACTGAAG+TGG | 0.592537 | 6_3:+22380307 | Msa0944950:CDS |
TCGCCCCACGTACGGTTCGG+AGG | 0.595092 | 6_3:+22379910 | Msa0944950:CDS |
ATCGGACAATCTCGTGCCTG+AGG | 0.595328 | 6_3:-22381559 | None:intergenic |
TCCACTAACAGATCAGCGAT+TGG | 0.597249 | 6_3:-22381021 | None:intergenic |
TCCAAAAGGATAAGTTGCGT+TGG | 0.598164 | 6_3:+22380495 | Msa0944950:CDS |
CCAACTTCTTGGGTTGCGGG+CGG | 0.601762 | 6_3:+22379546 | Msa0944950:CDS |
TTCCGAACTCCATATGGGGA+AGG | 0.601852 | 6_3:+22380016 | Msa0944950:CDS |
CCACAAATGGAATGAGAAGT+GGG | 0.607621 | 6_3:-22380077 | None:intergenic |
TTGGATGAACTAATGCGAAT+GGG | 0.608426 | 6_3:+22379197 | None:intergenic |
GGGTTGCGGGCGGAGAAGAG+CGG | 0.611745 | 6_3:+22379556 | Msa0944950:CDS |
GGGCGATAAAGGTAAGGTAA+GGG | 0.613080 | 6_3:-22380869 | None:intergenic |
TTTGGATGAACTAATGCGAA+TGG | 0.616157 | 6_3:+22379196 | None:intergenic |
GGTAATGCCAGTTGGCGAAG+TGG | 0.617022 | 6_3:+22379280 | Msa0944950:CDS |
AAAGTTTATTGGCAACAGGT+CGG | 0.617299 | 6_3:-22380171 | None:intergenic |
GGATGGCCCTAATGTTGTGT+TGG | 0.624287 | 6_3:+22379518 | Msa0944950:CDS |
CCACCCCAGCAGTAATGGTG+CGG | 0.624478 | 6_3:+22379940 | Msa0944950:CDS |
AAAGCGCAGGTAATGCCAGT+TGG | 0.627476 | 6_3:+22379272 | Msa0944950:CDS |
CGGCCTCCGAACCGTACGTG+GGG | 0.627484 | 6_3:-22379913 | None:intergenic |
GCAAAGAAGGCCTTCTAAGG+CGG | 0.631599 | 6_3:+22381507 | Msa0944950:CDS |
CGCTTTCGTCTCTCTCAGTG+TGG | 0.633261 | 6_3:-22379255 | None:intergenic |
ATTCATCATGCTCAAACATG+AGG | 0.643382 | 6_3:-22380139 | None:intergenic |
GCTGGTTGCCGAGGACAAGA+GGG | 0.644222 | 6_3:+22381595 | Msa0944950:CDS |
TGGGTTCCGAACTCCATATG+GGG | 0.648864 | 6_3:+22380012 | Msa0944950:CDS |
ACAAGAGGGAAGAACCCCTA+GGG | 0.649278 | 6_3:+22381609 | Msa0944950:CDS |
GACAAGAGGGAAGAACCCCT+AGG | 0.649952 | 6_3:+22381608 | Msa0944950:CDS |
TCGGCATAGAATGAAGGGGA+TGG | 0.655914 | 6_3:+22379501 | Msa0944950:CDS |
AAGCCGCACCATTACTGCTG+GGG | 0.656288 | 6_3:-22379943 | None:intergenic |
ACTGAGAGAGACGAAAGCGC+AGG | 0.664834 | 6_3:+22379259 | Msa0944950:CDS |
ACTGGAAGTTCCAGAACAGG+CGG | 0.667091 | 6_3:+22380374 | Msa0944950:CDS |
CTGGGTGTTTCCGAGCAGCG+AGG | 0.675742 | 6_3:-22379226 | None:intergenic |
GGGGTCGGCATAGAATGAAG+GGG | 0.682209 | 6_3:+22379497 | Msa0944950:CDS |
GGGACAGAACCAATGCTGTG+TGG | 0.684133 | 6_3:-22380849 | None:intergenic |
ATATGGAGTTCGGAACCCAA+AGG | 0.687361 | 6_3:-22380008 | None:intergenic |
GGGGAAGTTTAGGAGAGATG+GGG | 0.694692 | 6_3:-22379854 | None:intergenic |
CTGTAACGGATTCACCCTAG+GGG | 0.770874 | 6_3:-22381623 | None:intergenic |
CTGTGTGGAAAGATGCAACG+AGG | 0.793122 | 6_3:-22380834 | None:intergenic |
GTGGCGTTAAGCATCCCTAG+CGG | 0.814346 | 6_3:+22379299 | Msa0944950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATTAACAATAATAAAT+CGG | + | chr6_3:22381447-22381466 | Msa0944950:CDS | 10.0% |
!!! | TATAGTATATAAATGGATTT+TGG | + | chr6_3:22379775-22379794 | Msa0944950:intron | 15.0% |
!!! | ATAGTATATAAATGGATTTT+GGG | + | chr6_3:22379776-22379795 | Msa0944950:intron | 15.0% |
!! | ATAGCGAAAATAATAATTTA+TGG | + | chr6_3:22380249-22380268 | Msa0944950:CDS | 15.0% |
!!! | TGCCTTTTATTTTTTTTATT+CGG | + | chr6_3:22380420-22380439 | Msa0944950:CDS | 15.0% |
!! | ATCCGAATAAAAAAAATAAA+AGG | - | chr6_3:22380425-22380444 | None:intergenic | 15.0% |
!!! | TTTATTTTTTTTATTCGGAT+AGG | + | chr6_3:22380425-22380444 | Msa0944950:CDS | 15.0% |
!! | AATTGCATTAAAAAAATCAA+AGG | + | chr6_3:22380544-22380563 | Msa0944950:intron | 15.0% |
!! | GAAATTAACAATAATAAATC+GGG | + | chr6_3:22381448-22381467 | Msa0944950:CDS | 15.0% |
!!! | TATTTCATCCCATTTTTTTT+CGG | - | chr6_3:22379732-22379751 | None:intergenic | 20.0% |
!!! | TAGTATATAAATGGATTTTG+GGG | + | chr6_3:22379777-22379796 | Msa0944950:intron | 20.0% |
!! | TATACATACAAATCCATTTA+CGG | + | chr6_3:22380331-22380350 | Msa0944950:CDS | 20.0% |
!! | AATAAAAGGCAGTTTAATTA+TGG | - | chr6_3:22380411-22380430 | None:intergenic | 20.0% |
!!! | AAATGCACATTTATTTTTAC+GGG | - | chr6_3:22381377-22381396 | None:intergenic | 20.0% |
!!! | CAAATGCACATTTATTTTTA+CGG | - | chr6_3:22381378-22381397 | None:intergenic | 20.0% |
!!! | ATTTCATCCCATTTTTTTTC+GGG | - | chr6_3:22379731-22379750 | None:intergenic | 25.0% |
!!! | AGTATATAAATGGATTTTGG+GGG | + | chr6_3:22379778-22379797 | Msa0944950:intron | 25.0% |
!!! | CTCTAAAGTATCTTTTTTCT+GGG | - | chr6_3:22380286-22380305 | None:intergenic | 25.0% |
!!! | TCTCTAAAGTATCTTTTTTC+TGG | - | chr6_3:22380287-22380306 | None:intergenic | 25.0% |
! | TAATGCAATTAAGAATTCCA+CGG | - | chr6_3:22380534-22380553 | None:intergenic | 25.0% |
! | TAAGATTGCTTAATGAGTTA+TGG | - | chr6_3:22380715-22380734 | None:intergenic | 25.0% |
CTAGCGCTATAGTATATAAA+TGG | + | chr6_3:22379768-22379787 | Msa0944950:intron | 30.0% | |
!! | GTATATAAATGGATTTTGGG+GGG | + | chr6_3:22379779-22379798 | Msa0944950:intron | 30.0% |
!! | TATATAAATGGATTTTGGGG+GGG | + | chr6_3:22379780-22379799 | Msa0944950:intron | 30.0% |
AAAAGGCAGTTTAATTATGG+TGG | - | chr6_3:22380408-22380427 | None:intergenic | 30.0% | |
TATTCGGATAGGATTTATGT+TGG | + | chr6_3:22380436-22380455 | Msa0944950:CDS | 30.0% | |
GCAAAAATACGATAGATAAG+GGG | - | chr6_3:22380921-22380940 | None:intergenic | 30.0% | |
GGCAAAAATACGATAGATAA+GGG | - | chr6_3:22380922-22380941 | None:intergenic | 30.0% | |
CAATAAACTAATGGAAGATG+AGG | - | chr6_3:22381241-22381260 | None:intergenic | 30.0% | |
CGATGTTGACAATAAACTAA+TGG | - | chr6_3:22381250-22381269 | None:intergenic | 30.0% | |
TAGTTGTTAAGTCTTTCCTT+CGG | + | chr6_3:22381294-22381313 | Msa0944950:intron | 30.0% | |
TAAGAGAGCCATTCCATTTA+GGG | + | chr6_3:22379611-22379630 | Msa0944950:intron | 35.0% | |
!!! | ATCCCATTTTTTTTCGGGAT+AGG | - | chr6_3:22379726-22379745 | None:intergenic | 35.0% |
GATCATCAAATTCCCACAAA+TGG | - | chr6_3:22380093-22380112 | None:intergenic | 35.0% | |
ATTCATCATGCTCAAACATG+AGG | - | chr6_3:22380142-22380161 | None:intergenic | 35.0% | |
AAAGTTTATTGGCAACAGGT+CGG | - | chr6_3:22380174-22380193 | None:intergenic | 35.0% | |
! | CAGTTTTCCATTCTCATATG+AGG | - | chr6_3:22380201-22380220 | None:intergenic | 35.0% |
CTCATATGAGAATGGAAAAC+TGG | + | chr6_3:22380199-22380218 | Msa0944950:CDS | 35.0% | |
! | AACTGGAGAATTTTCTGCAT+CGG | + | chr6_3:22380216-22380235 | Msa0944950:CDS | 35.0% |
!!! | GTATCTTTTTTCTGGGAACA+TGG | - | chr6_3:22380279-22380298 | None:intergenic | 35.0% |
GAAGCATATCTATCCGTAAA+TGG | - | chr6_3:22380347-22380366 | None:intergenic | 35.0% | |
TCAATCAATAGAGGCTAGAT+CGG | + | chr6_3:22380581-22380600 | Msa0944950:intron | 35.0% | |
CTCATGTCAGTATTATCACA+GGG | - | chr6_3:22380666-22380685 | None:intergenic | 35.0% | |
ACTCATGTCAGTATTATCAC+AGG | - | chr6_3:22380667-22380686 | None:intergenic | 35.0% | |
TGATAATACTGACATGAGTC+AGG | + | chr6_3:22380668-22380687 | Msa0944950:intron | 35.0% | |
GGGCAAAAATACGATAGATA+AGG | - | chr6_3:22380923-22380942 | None:intergenic | 35.0% | |
GCAATCCATTCTTTCATTCA+TGG | + | chr6_3:22381056-22381075 | Msa0944950:CDS | 35.0% | |
TCCATTCTTTCATTCATGGA+CGG | + | chr6_3:22381060-22381079 | Msa0944950:CDS | 35.0% | |
GTTTATTGTCAACATCGTAG+AGG | + | chr6_3:22381253-22381272 | Msa0944950:intron | 35.0% | |
AGTTGTTAAGTCTTTCCTTC+GGG | + | chr6_3:22381295-22381314 | Msa0944950:intron | 35.0% | |
TGTTGTGCACTAAGAACTTT+AGG | - | chr6_3:22381420-22381439 | None:intergenic | 35.0% | |
GCTTTGCCAACACAACATTA+GGG | - | chr6_3:22379527-22379546 | None:intergenic | 40.0% | |
CTAAGAGAGCCATTCCATTT+AGG | + | chr6_3:22379610-22379629 | Msa0944950:intron | 40.0% | |
!!! | CCATTTTTTTTCGGGATAGG+CGG | - | chr6_3:22379723-22379742 | None:intergenic | 40.0% |
CGCCTATCCCGAAAAAAAAT+GGG | + | chr6_3:22379721-22379740 | Msa0944950:intron | 40.0% | |
TTCACTCAACGATTGCCTTT+GGG | + | chr6_3:22379993-22380012 | Msa0944950:CDS | 40.0% | |
CATGTAAATGATCGAGACCT+CGG | - | chr6_3:22380055-22380074 | None:intergenic | 40.0% | |
CCACAAATGGAATGAGAAGT+GGG | - | chr6_3:22380080-22380099 | None:intergenic | 40.0% | |
CCACTTCTCATTCCATTTGT+GGG | + | chr6_3:22380078-22380097 | Msa0944950:CDS | 40.0% | |
CCTGTTGCCAATAAACTTTC+CGG | + | chr6_3:22380175-22380194 | Msa0944950:CDS | 40.0% | |
TATGAGGCCGGAAAGTTTAT+TGG | - | chr6_3:22380185-22380204 | None:intergenic | 40.0% | |
TTTCCATTCTCATATGAGGC+CGG | - | chr6_3:22380197-22380216 | None:intergenic | 40.0% | |
ACGGATAGATATGCTTCGAT+TGG | + | chr6_3:22380350-22380369 | Msa0944950:CDS | 40.0% | |
AGATATGCTTCGATTGGAAC+TGG | + | chr6_3:22380356-22380375 | Msa0944950:CDS | 40.0% | |
!! | AGGATTTATGTTGGCTTCGT+CGG | + | chr6_3:22380445-22380464 | Msa0944950:CDS | 40.0% |
TTTGTTACGTCAGCTCCAAA+AGG | + | chr6_3:22380481-22380500 | Msa0944950:CDS | 40.0% | |
TCCAAAAGGATAAGTTGCGT+TGG | + | chr6_3:22380495-22380514 | Msa0944950:CDS | 40.0% | |
! | TCCAACGCAACTTATCCTTT+TGG | - | chr6_3:22380499-22380518 | None:intergenic | 40.0% |
TCAACCCTCTCAATCAATAG+AGG | + | chr6_3:22380572-22380591 | Msa0944950:intron | 40.0% | |
! | CTAGCCTCTATTGATTGAGA+GGG | - | chr6_3:22380579-22380598 | None:intergenic | 40.0% |
! | TCTAGCCTCTATTGATTGAG+AGG | - | chr6_3:22380580-22380599 | None:intergenic | 40.0% |
GGATAAATCCGAATGACTAG+TGG | + | chr6_3:22380689-22380708 | Msa0944950:intron | 40.0% | |
AGTTATGGCCACTAGTCATT+CGG | - | chr6_3:22380700-22380719 | None:intergenic | 40.0% | |
ACCGTCCATGAATGAAAGAA+TGG | - | chr6_3:22381064-22381083 | None:intergenic | 40.0% | |
! | CCTCTTTGGAGATGAAAAGA+AGG | - | chr6_3:22381101-22381120 | None:intergenic | 40.0% |
! | CCTTCTTTTCATCTCCAAAG+AGG | + | chr6_3:22381098-22381117 | Msa0944950:intron | 40.0% |
TATTGTCAACATCGTAGAGG+TGG | + | chr6_3:22381256-22381275 | Msa0944950:intron | 40.0% | |
AGATCAGACAAATAACCCGA+AGG | - | chr6_3:22381313-22381332 | None:intergenic | 40.0% | |
AAGTTCTTAGTGCACAACAG+AGG | + | chr6_3:22381421-22381440 | Msa0944950:intron | 40.0% | |
AGTTCTTAGTGCACAACAGA+GGG | + | chr6_3:22381422-22381441 | Msa0944950:intron | 40.0% | |
! | TCAAAGACTTGGTTGGATGC+GGG | - | chr6_3:22379385-22379404 | None:intergenic | 45.0% |
! | GTCAAAGACTTGGTTGGATG+CGG | - | chr6_3:22379386-22379405 | None:intergenic | 45.0% |
ATCCAACCAAGTCTTTGACC+AGG | + | chr6_3:22379387-22379406 | Msa0944950:intron | 45.0% | |
TCCAACCAAGTCTTTGACCA+GGG | + | chr6_3:22379388-22379407 | Msa0944950:intron | 45.0% | |
GGCTTTGCCAACACAACATT+AGG | - | chr6_3:22379528-22379547 | None:intergenic | 45.0% | |
TGTTGGCAAAGCCAACTTCT+TGG | + | chr6_3:22379535-22379554 | Msa0944950:CDS | 45.0% | |
GTTGGCAAAGCCAACTTCTT+GGG | + | chr6_3:22379536-22379555 | Msa0944950:CDS | 45.0% | |
! | AAAGCCAACTTCTTGGGTTG+CGG | + | chr6_3:22379542-22379561 | Msa0944950:CDS | 45.0% |
! | CATTTAGGGCGAGACAGAAT+GGG | + | chr6_3:22379625-22379644 | Msa0944950:intron | 45.0% |
CCGCCTATCCCGAAAAAAAA+TGG | + | chr6_3:22379720-22379739 | Msa0944950:intron | 45.0% | |
AGTTTCTGCCTCATACAGCT+CGG | - | chr6_3:22379891-22379910 | None:intergenic | 45.0% | |
GTTCACTCAACGATTGCCTT+TGG | + | chr6_3:22379992-22380011 | Msa0944950:CDS | 45.0% | |
ATATGGAGTTCGGAACCCAA+AGG | - | chr6_3:22380011-22380030 | None:intergenic | 45.0% | |
! | TTTGGGTTCCGAACTCCATA+TGG | + | chr6_3:22380010-22380029 | Msa0944950:CDS | 45.0% |
TTGGGTTCCGAACTCCATAT+GGG | + | chr6_3:22380011-22380030 | Msa0944950:CDS | 45.0% | |
CGAGGTCTCGATCATTTACA+TGG | + | chr6_3:22380053-22380072 | Msa0944950:intron | 45.0% | |
CCCACTTCTCATTCCATTTG+TGG | + | chr6_3:22380077-22380096 | Msa0944950:CDS | 45.0% | |
CCCACAAATGGAATGAGAAG+TGG | - | chr6_3:22380081-22380100 | None:intergenic | 45.0% | |
CCGGAAAGTTTATTGGCAAC+AGG | - | chr6_3:22380178-22380197 | None:intergenic | 45.0% | |
TTTCCGGCCTCATATGAGAA+TGG | + | chr6_3:22380191-22380210 | Msa0944950:CDS | 45.0% | |
! | TGGAGAATTTTCTGCATCGG+TGG | + | chr6_3:22380219-22380238 | Msa0944950:CDS | 45.0% |
!! | GGATTTATGTTGGCTTCGTC+GGG | + | chr6_3:22380446-22380465 | Msa0944950:CDS | 45.0% |
TTGGAATCGAGAAAGTTCCG+TGG | + | chr6_3:22380514-22380533 | Msa0944950:intron | 45.0% | |
ATAGAGGCTAGATCGGACTA+AGG | + | chr6_3:22380588-22380607 | Msa0944950:intron | 45.0% | |
GAGGAAAGGCTAAGCGAAAA+AGG | - | chr6_3:22380739-22380758 | None:intergenic | 45.0% | |
CGTAACGGTAGAAAGAGGAA+AGG | - | chr6_3:22380753-22380772 | None:intergenic | 45.0% | |
CATCTCGTAACGGTAGAAAG+AGG | - | chr6_3:22380758-22380777 | None:intergenic | 45.0% | |
GAGGATACTGCATCTCGTAA+CGG | - | chr6_3:22380768-22380787 | None:intergenic | 45.0% | |
CTCTAACGTCTTTGCTTGCA+CGG | + | chr6_3:22380785-22380804 | Msa0944950:CDS | 45.0% | |
TGCATCTTTCCACACAGCAT+TGG | + | chr6_3:22380840-22380859 | Msa0944950:CDS | 45.0% | |
GGGCGATAAAGGTAAGGTAA+GGG | - | chr6_3:22380872-22380891 | None:intergenic | 45.0% | |
!! | TTGCTCTGGGCTTTTTGTTG+GGG | - | chr6_3:22380943-22380962 | None:intergenic | 45.0% |
!! | CTTGCTCTGGGCTTTTTGTT+GGG | - | chr6_3:22380944-22380963 | None:intergenic | 45.0% |
CAACAAAAAGCCCAGAGCAA+GGG | + | chr6_3:22380943-22380962 | Msa0944950:intron | 45.0% | |
AACAAAAAGCCCAGAGCAAG+GGG | + | chr6_3:22380944-22380963 | Msa0944950:intron | 45.0% | |
!!! | GATTGGCATTGGTTTTGGTG+GGG | - | chr6_3:22381007-22381026 | None:intergenic | 45.0% |
!!! | CGATTGGCATTGGTTTTGGT+GGG | - | chr6_3:22381008-22381027 | None:intergenic | 45.0% |
!!! | TCAGCGATTGGCATTGGTTT+TGG | - | chr6_3:22381012-22381031 | None:intergenic | 45.0% |
AACAGATCAGCGATTGGCAT+TGG | - | chr6_3:22381018-22381037 | None:intergenic | 45.0% | |
TCCACTAACAGATCAGCGAT+TGG | - | chr6_3:22381024-22381043 | None:intergenic | 45.0% | |
! | TGTTAGTGGACAGAGCTTCT+GGG | + | chr6_3:22381034-22381053 | Msa0944950:CDS | 45.0% |
TCATTCATGGACGGTCACTT+AGG | + | chr6_3:22381069-22381088 | Msa0944950:CDS | 45.0% | |
CATTCATGGACGGTCACTTA+GGG | + | chr6_3:22381070-22381089 | Msa0944950:CDS | 45.0% | |
TTTCATCTCCAAAGAGGACG+AGG | + | chr6_3:22381104-22381123 | Msa0944950:intron | 45.0% | |
!! | TGTTTTTGCCTCGTCCTCTT+TGG | - | chr6_3:22381115-22381134 | None:intergenic | 45.0% |
AAAAACAGCGTTCCGTTGTC+CGG | + | chr6_3:22381128-22381147 | Msa0944950:intron | 45.0% | |
ATAGCGTTCTTCAGACCGAA+GGG | - | chr6_3:22381194-22381213 | None:intergenic | 45.0% | |
TATAGCGTTCTTCAGACCGA+AGG | - | chr6_3:22381195-22381214 | None:intergenic | 45.0% | |
TGTGCATTTGACGTAACAGC+AGG | + | chr6_3:22381388-22381407 | Msa0944950:intron | 45.0% | |
GTTCTTAGTGCACAACAGAG+GGG | + | chr6_3:22381423-22381442 | Msa0944950:intron | 45.0% | |
!! | GAGAGGCATTCTTCAACTTC+TGG | - | chr6_3:22381474-22381493 | None:intergenic | 45.0% |
AAGAATGCCTCTCACACAGA+TGG | + | chr6_3:22381481-22381500 | Msa0944950:CDS | 45.0% | |
ACACAGATGGACAGCAAAGA+AGG | + | chr6_3:22381494-22381513 | Msa0944950:CDS | 45.0% | |
ACAGCAAAGAAGGCCTTCTA+AGG | + | chr6_3:22381504-22381523 | Msa0944950:CDS | 45.0% | |
CATTTGTAAGAGTCCTCCTC+AGG | + | chr6_3:22381543-22381562 | Msa0944950:CDS | 45.0% | |
CCAGCAAGTTTCTCCTTCAT+CGG | - | chr6_3:22381580-22381599 | None:intergenic | 45.0% | |
!! | ACTGTAACGGATTCACCCTA+GGG | - | chr6_3:22381627-22381646 | None:intergenic | 45.0% |
!! | AACTGTAACGGATTCACCCT+AGG | - | chr6_3:22381628-22381647 | None:intergenic | 45.0% |
ATCGCATTCCGCAACTGTAA+CGG | - | chr6_3:22381640-22381659 | None:intergenic | 45.0% | |
AAAGCGCAGGTAATGCCAGT+TGG | + | chr6_3:22379272-22379291 | Msa0944950:CDS | 50.0% | |
! | CCTCTCTTTTCGTACCGCTA+GGG | - | chr6_3:22379316-22379335 | None:intergenic | 50.0% |
! | ACCTCTCTTTTCGTACCGCT+AGG | - | chr6_3:22379317-22379336 | None:intergenic | 50.0% |
! | TCCCTGGTCAAAGACTTGGT+TGG | - | chr6_3:22379392-22379411 | None:intergenic | 50.0% |
CCAAGTCTTTGACCAGGGAA+CGG | + | chr6_3:22379393-22379412 | Msa0944950:intron | 50.0% | |
CAAGTCTTTGACCAGGGAAC+GGG | + | chr6_3:22379394-22379413 | Msa0944950:intron | 50.0% | |
TAATTCCCACTACCGCTGGA+AGG | + | chr6_3:22379418-22379437 | Msa0944950:intron | 50.0% | |
TCGGCATAGAATGAAGGGGA+TGG | + | chr6_3:22379501-22379520 | Msa0944950:CDS | 50.0% | |
GGATGGCCCTAATGTTGTGT+TGG | + | chr6_3:22379518-22379537 | Msa0944950:CDS | 50.0% | |
! | AAGCCAACTTCTTGGGTTGC+GGG | + | chr6_3:22379543-22379562 | Msa0944950:CDS | 50.0% |
CTGTCTCGCCCTAAATGGAA+TGG | - | chr6_3:22379622-22379641 | None:intergenic | 50.0% | |
CCATTCTGTCTCGCCCTAAA+TGG | - | chr6_3:22379627-22379646 | None:intergenic | 50.0% | |
! | CCATTTAGGGCGAGACAGAA+TGG | + | chr6_3:22379624-22379643 | Msa0944950:intron | 50.0% |
GTAGTCGTCGTCTGACCAAT+TGG | - | chr6_3:22379677-22379696 | None:intergenic | 50.0% | |
GGGGAAGTTTAGGAGAGATG+GGG | - | chr6_3:22379857-22379876 | None:intergenic | 50.0% | |
GGGGGAAGTTTAGGAGAGAT+GGG | - | chr6_3:22379858-22379877 | None:intergenic | 50.0% | |
CATCTCTCCTAAACTTCCCC+CGG | + | chr6_3:22379857-22379876 | Msa0944950:CDS | 50.0% | |
GTTTCTGCCTCATACAGCTC+GGG | - | chr6_3:22379890-22379909 | None:intergenic | 50.0% | |
TAAGCCGCACCATTACTGCT+GGG | - | chr6_3:22379947-22379966 | None:intergenic | 50.0% | |
TGGGTTCCGAACTCCATATG+GGG | + | chr6_3:22380012-22380031 | Msa0944950:CDS | 50.0% | |
TTCCGAACTCCATATGGGGA+AGG | + | chr6_3:22380016-22380035 | Msa0944950:CDS | 50.0% | |
CTCCTTCCCCATATGGAGTT+CGG | - | chr6_3:22380021-22380040 | None:intergenic | 50.0% | |
AACAACGCTCCTTCCCCATA+TGG | - | chr6_3:22380028-22380047 | None:intergenic | 50.0% | |
!! | AAGGAGCGTTGTTGTTTCCG+AGG | + | chr6_3:22380035-22380054 | Msa0944950:intron | 50.0% |
CATGAGGCGATCGTTCGTTA+GGG | - | chr6_3:22380126-22380145 | None:intergenic | 50.0% | |
ACATGAGGCGATCGTTCGTT+AGG | - | chr6_3:22380127-22380146 | None:intergenic | 50.0% | |
AACAACGAGCACGACTGAAG+TGG | + | chr6_3:22380307-22380326 | Msa0944950:CDS | 50.0% | |
GGAACTGGAAGTTCCAGAAC+AGG | + | chr6_3:22380371-22380390 | Msa0944950:CDS | 50.0% | |
ACTGGAAGTTCCAGAACAGG+CGG | + | chr6_3:22380374-22380393 | Msa0944950:CDS | 50.0% | |
!! | TTTATGTTGGCTTCGTCGGG+AGG | + | chr6_3:22380449-22380468 | Msa0944950:CDS | 50.0% |
GATCGGACTAAGGAGAGAGA+CGG | + | chr6_3:22380598-22380617 | Msa0944950:intron | 50.0% | |
AGGAGAGAGACGGTTGAGTA+CGG | + | chr6_3:22380608-22380627 | Msa0944950:intron | 50.0% | |
GTTGAGTACGGAAGCGAAAG+CGG | + | chr6_3:22380620-22380639 | Msa0944950:intron | 50.0% | |
GGAAGCGAAAGCGGAGATAT+AGG | + | chr6_3:22380629-22380648 | Msa0944950:intron | 50.0% | |
CGTGCAAGCAAAGACGTTAG+AGG | - | chr6_3:22380787-22380806 | None:intergenic | 50.0% | |
CTGTGTGGAAAGATGCAACG+AGG | - | chr6_3:22380837-22380856 | None:intergenic | 50.0% | |
CGGGCGATAAAGGTAAGGTA+AGG | - | chr6_3:22380873-22380892 | None:intergenic | 50.0% | |
ACCTTACCTTTATCGCCCGT+CGG | + | chr6_3:22380874-22380893 | Msa0944950:CDS | 50.0% | |
!! | CCTTGCTCTGGGCTTTTTGT+TGG | - | chr6_3:22380945-22380964 | None:intergenic | 50.0% |
CCAACAAAAAGCCCAGAGCA+AGG | + | chr6_3:22380942-22380961 | Msa0944950:intron | 50.0% | |
ACAAAAAGCCCAGAGCAAGG+GGG | + | chr6_3:22380945-22380964 | Msa0944950:intron | 50.0% | |
GGGGGGAAAGAATGCAATTC+CGG | + | chr6_3:22380973-22380992 | Msa0944950:CDS | 50.0% | |
! | TTTTGGTGGGGCTGAGATTC+CGG | - | chr6_3:22380995-22381014 | None:intergenic | 50.0% |
!!! | GCGATTGGCATTGGTTTTGG+TGG | - | chr6_3:22381009-22381028 | None:intergenic | 50.0% |
GCCAATCGCTGATCTGTTAG+TGG | + | chr6_3:22381020-22381039 | Msa0944950:CDS | 50.0% | |
! | CTGTTAGTGGACAGAGCTTC+TGG | + | chr6_3:22381033-22381052 | Msa0944950:CDS | 50.0% |
AAAACAGCGTTCCGTTGTCC+GGG | + | chr6_3:22381129-22381148 | Msa0944950:intron | 50.0% | |
AGATGAGGTTCATTGCTCGC+TGG | - | chr6_3:22381226-22381245 | None:intergenic | 50.0% | |
AGTGTTTGAGCGCGAGAACA+CGG | + | chr6_3:22381339-22381358 | Msa0944950:intron | 50.0% | |
TTGCTGTCCATCTGTGTGAG+AGG | - | chr6_3:22381491-22381510 | None:intergenic | 50.0% | |
! | GCAAAGAAGGCCTTCTAAGG+CGG | + | chr6_3:22381507-22381526 | Msa0944950:CDS | 50.0% |
CCGATGAAGGAGAAACTTGC+TGG | + | chr6_3:22381577-22381596 | Msa0944950:CDS | 50.0% | |
ACAAGAGGGAAGAACCCCTA+GGG | + | chr6_3:22381609-22381628 | Msa0944950:CDS | 50.0% | |
!! | CTGTAACGGATTCACCCTAG+GGG | - | chr6_3:22381626-22381645 | None:intergenic | 50.0% |
GGGTGAATCCGTTACAGTTG+CGG | + | chr6_3:22381629-22381648 | Msa0944950:CDS | 50.0% | |
CTCTCAGTGTGGTCAGCACT+GGG | - | chr6_3:22379247-22379266 | None:intergenic | 55.0% | |
TCTCTCAGTGTGGTCAGCAC+TGG | - | chr6_3:22379248-22379267 | None:intergenic | 55.0% | |
CGCTTTCGTCTCTCTCAGTG+TGG | - | chr6_3:22379258-22379277 | None:intergenic | 55.0% | |
! | ACTGAGAGAGACGAAAGCGC+AGG | + | chr6_3:22379259-22379278 | Msa0944950:CDS | 55.0% |
GGTAATGCCAGTTGGCGAAG+TGG | + | chr6_3:22379280-22379299 | Msa0944950:CDS | 55.0% | |
CTTAACGCCACTTCGCCAAC+TGG | - | chr6_3:22379290-22379309 | None:intergenic | 55.0% | |
GTGGCGTTAAGCATCCCTAG+CGG | + | chr6_3:22379299-22379318 | Msa0944950:CDS | 55.0% | |
CCCTAGCGGTACGAAAAGAG+AGG | + | chr6_3:22379313-22379332 | Msa0944950:intron | 55.0% | |
CCGTTCCCTGGTCAAAGACT+TGG | - | chr6_3:22379396-22379415 | None:intergenic | 55.0% | |
GTGGGAATTATCCCGTTCCC+TGG | - | chr6_3:22379408-22379427 | None:intergenic | 55.0% | |
GGGATAATTCCCACTACCGC+TGG | + | chr6_3:22379414-22379433 | Msa0944950:intron | 55.0% | |
CCTTCATTCTATGCCGACCC+CGG | - | chr6_3:22379498-22379517 | None:intergenic | 55.0% | |
CGGGGTCGGCATAGAATGAA+GGG | + | chr6_3:22379496-22379515 | Msa0944950:CDS | 55.0% | |
GGGGTCGGCATAGAATGAAG+GGG | + | chr6_3:22379497-22379516 | Msa0944950:CDS | 55.0% | |
TTAGGGCGAGACAGAATGGG+CGG | + | chr6_3:22379628-22379647 | Msa0944950:intron | 55.0% | |
CGTCGTCTGACCAATTGGCT+CGG | - | chr6_3:22379672-22379691 | None:intergenic | 55.0% | |
CGGGGGAAGTTTAGGAGAGA+TGG | - | chr6_3:22379859-22379878 | None:intergenic | 55.0% | |
CCTAAACTTCCCCCGGTCTT+CGG | + | chr6_3:22379864-22379883 | Msa0944950:CDS | 55.0% | |
AAGCCGCACCATTACTGCTG+GGG | - | chr6_3:22379946-22379965 | None:intergenic | 55.0% | |
CTAAGCCGCACCATTACTGC+TGG | - | chr6_3:22379948-22379967 | None:intergenic | 55.0% | |
CAGCAGTAATGGTGCGGCTT+AGG | + | chr6_3:22379946-22379965 | Msa0944950:CDS | 55.0% | |
AGGCGATCGTTCGTTAGGGA+CGG | - | chr6_3:22380122-22380141 | None:intergenic | 55.0% | |
TTGCTTGCACGGCTTTCGAC+CGG | + | chr6_3:22380796-22380815 | Msa0944950:CDS | 55.0% | |
GGGACAGAACCAATGCTGTG+TGG | - | chr6_3:22380852-22380871 | None:intergenic | 55.0% | |
CCTTACCTTTATCGCCCGTC+GGG | + | chr6_3:22380875-22380894 | Msa0944950:CDS | 55.0% | |
CAAAAAGCCCAGAGCAAGGG+GGG | + | chr6_3:22380946-22380965 | Msa0944950:intron | 55.0% | |
GAGGTTCATTGCTCGCTGGT+AGG | - | chr6_3:22381222-22381241 | None:intergenic | 55.0% | |
ATCGGACAATCTCGTGCCTG+AGG | - | chr6_3:22381562-22381581 | None:intergenic | 55.0% | |
GGCACGAGATTGTCCGATGA+AGG | + | chr6_3:22381564-22381583 | Msa0944950:CDS | 55.0% | |
!! | GAGAAACTTGCTGGTTGCCG+AGG | + | chr6_3:22381586-22381605 | Msa0944950:CDS | 55.0% |
GGGTTCTTCCCTCTTGTCCT+CGG | - | chr6_3:22381606-22381625 | None:intergenic | 55.0% | |
GACAAGAGGGAAGAACCCCT+AGG | + | chr6_3:22381608-22381627 | Msa0944950:CDS | 55.0% | |
TGGGTGTAAGCCTCGCTGCT+CGG | + | chr6_3:22379216-22379235 | Msa0944950:CDS | 60.0% | |
GCTTCCCAAAAAGCCAGCCC+CGG | + | chr6_3:22379471-22379490 | Msa0944950:CDS | 60.0% | |
CTTCCCAAAAAGCCAGCCCC+GGG | + | chr6_3:22379472-22379491 | Msa0944950:CDS | 60.0% | |
CCGGGGTCGGCATAGAATGA+AGG | + | chr6_3:22379495-22379514 | Msa0944950:CDS | 60.0% | |
! | CCAACTTCTTGGGTTGCGGG+CGG | + | chr6_3:22379546-22379565 | Msa0944950:CDS | 60.0% |
CTCTTAGTTACGCTGCGCCC+CGG | - | chr6_3:22379597-22379616 | None:intergenic | 60.0% | |
TAGGGCGAGACAGAATGGGC+GGG | + | chr6_3:22379629-22379648 | Msa0944950:intron | 60.0% | |
GGTCTGGTGTCCGAGCCAAT+TGG | + | chr6_3:22379659-22379678 | Msa0944950:intron | 60.0% | |
CCGAAGACCGGGGGAAGTTT+AGG | - | chr6_3:22379867-22379886 | None:intergenic | 60.0% | |
ATACAGCTCGGGCCGAAGAC+CGG | - | chr6_3:22379879-22379898 | None:intergenic | 60.0% | |
TCTTCGGCCCGAGCTGTATG+AGG | + | chr6_3:22379880-22379899 | Msa0944950:CDS | 60.0% | |
GCAGAAACTCGCCCCACGTA+CGG | + | chr6_3:22379902-22379921 | Msa0944950:CDS | 60.0% | |
AACTCGCCCCACGTACGGTT+CGG | + | chr6_3:22379907-22379926 | Msa0944950:CDS | 60.0% | |
ATTACTGCTGGGGTGGGGCT+CGG | - | chr6_3:22379936-22379955 | None:intergenic | 60.0% | |
GCACCATTACTGCTGGGGTG+GGG | - | chr6_3:22379941-22379960 | None:intergenic | 60.0% | |
CGCACCATTACTGCTGGGGT+GGG | - | chr6_3:22379942-22379961 | None:intergenic | 60.0% | |
CCACCCCAGCAGTAATGGTG+CGG | + | chr6_3:22379940-22379959 | Msa0944950:CDS | 60.0% | |
GAAGTTCCAGAACAGGCGGC+TGG | + | chr6_3:22380378-22380397 | Msa0944950:CDS | 60.0% | |
GGTATACCAGCCGCCTGTTC+TGG | - | chr6_3:22380387-22380406 | None:intergenic | 60.0% | |
TGCTTGCACGGCTTTCGACC+GGG | + | chr6_3:22380797-22380816 | Msa0944950:CDS | 60.0% | |
GAGGAAACCTCTTCCCGTCC+CGG | - | chr6_3:22380818-22380837 | None:intergenic | 60.0% | |
CCCGACGGGCGATAAAGGTA+AGG | - | chr6_3:22380878-22380897 | None:intergenic | 60.0% | |
ATGCGAACCTTGACGCCCGA+CGG | - | chr6_3:22380893-22380912 | None:intergenic | 60.0% | |
! | TTCCGTTGTCCGGGTGCTGT+TGG | + | chr6_3:22381138-22381157 | Msa0944950:intron | 60.0% |
GTCCAACAGCACCCGGACAA+CGG | - | chr6_3:22381143-22381162 | None:intergenic | 60.0% | |
!! | GTTGTCCGGGTGCTGTTGGA+CGG | + | chr6_3:22381142-22381161 | Msa0944950:intron | 60.0% |
!! | GGACGGACGGACTATTCTGC+TGG | + | chr6_3:22381159-22381178 | Msa0944950:intron | 60.0% |
!! | GGACGGACTATTCTGCTGGC+AGG | + | chr6_3:22381163-22381182 | Msa0944950:intron | 60.0% |
TGCTGGCAGGTGATGCCCTT+CGG | + | chr6_3:22381176-22381195 | Msa0944950:intron | 60.0% | |
!! | AGGCCTTCTAAGGCGGACTC+TGG | + | chr6_3:22381514-22381533 | Msa0944950:CDS | 60.0% |
GAGCCAGAGTCCGCCTTAGA+AGG | - | chr6_3:22381520-22381539 | None:intergenic | 60.0% | |
GGACAATCTCGTGCCTGAGG+AGG | - | chr6_3:22381559-22381578 | None:intergenic | 60.0% | |
! | TGCTGGTTGCCGAGGACAAG+AGG | + | chr6_3:22381594-22381613 | Msa0944950:CDS | 60.0% |
GCTGGTTGCCGAGGACAAGA+GGG | + | chr6_3:22381595-22381614 | Msa0944950:CDS | 60.0% | |
CTGGGTGTTTCCGAGCAGCG+AGG | - | chr6_3:22379229-22379248 | None:intergenic | 65.0% | |
TACGTCCGTACCGCTCCTCG+CGG | + | chr6_3:22379352-22379371 | Msa0944950:intron | 65.0% | |
CTACTCCGCGAGGAGCGGTA+CGG | - | chr6_3:22379360-22379379 | None:intergenic | 65.0% | |
GGGATCTACTCCGCGAGGAG+CGG | - | chr6_3:22379365-22379384 | None:intergenic | 65.0% | |
GATGCGGGATCTACTCCGCG+AGG | - | chr6_3:22379370-22379389 | None:intergenic | 65.0% | |
!! | GCTGGCCTTCCAGCGGTAGT+GGG | - | chr6_3:22379426-22379445 | None:intergenic | 65.0% |
ACTACCGCTGGAAGGCCAGC+CGG | + | chr6_3:22379426-22379445 | Msa0944950:intron | 65.0% | |
ATTCTATGCCGACCCCGGCC+CGG | - | chr6_3:22379493-22379512 | None:intergenic | 65.0% | |
CCGCCCGCAACCCAAGAAGT+TGG | - | chr6_3:22379549-22379568 | None:intergenic | 65.0% | |
ACAGAATGGGCGGGCACGAG+CGG | + | chr6_3:22379638-22379657 | Msa0944950:intron | 65.0% | |
AAGCTTATCCCCGCCCCGAC+CGG | + | chr6_3:22379817-22379836 | Msa0944950:intron | 65.0% | |
TACAGCTCGGGCCGAAGACC+GGG | - | chr6_3:22379878-22379897 | None:intergenic | 65.0% | |
TCGGCCTCCGAACCGTACGT+GGG | - | chr6_3:22379917-22379936 | None:intergenic | 65.0% | |
GAGCCCCACCCCAGCAGTAA+TGG | + | chr6_3:22379935-22379954 | Msa0944950:CDS | 65.0% | |
CCGCACCATTACTGCTGGGG+TGG | - | chr6_3:22379943-22379962 | None:intergenic | 65.0% | |
TGCACGGCTTTCGACCGGGA+CGG | + | chr6_3:22380801-22380820 | Msa0944950:CDS | 65.0% | |
CTTTCGACCGGGACGGGAAG+AGG | + | chr6_3:22380808-22380827 | Msa0944950:CDS | 65.0% | |
TGACGCCCGACGGGCGATAA+AGG | - | chr6_3:22380883-22380902 | None:intergenic | 65.0% | |
TTATCGCCCGTCGGGCGTCA+AGG | + | chr6_3:22380883-22380902 | Msa0944950:CDS | 65.0% | |
TGCGAACCTTGACGCCCGAC+GGG | - | chr6_3:22380892-22380911 | None:intergenic | 65.0% | |
!! | TCCGGGTGCTGTTGGACGGA+CGG | + | chr6_3:22381146-22381165 | Msa0944950:intron | 65.0% |
TCCGTCCGTCCAACAGCACC+CGG | - | chr6_3:22381150-22381169 | None:intergenic | 65.0% | |
!! | GGCTGGCCTTCCAGCGGTAG+TGG | - | chr6_3:22379427-22379446 | None:intergenic | 70.0% |
CTACCGCTGGAAGGCCAGCC+GGG | + | chr6_3:22379427-22379446 | Msa0944950:intron | 70.0% | |
!!! | CGGCCCGGGGCTGGCTTTTT+GGG | - | chr6_3:22379478-22379497 | None:intergenic | 70.0% |
CCAAAAAGCCAGCCCCGGGC+CGG | + | chr6_3:22379476-22379495 | Msa0944950:CDS | 70.0% | |
CAAAAAGCCAGCCCCGGGCC+GGG | + | chr6_3:22379477-22379496 | Msa0944950:CDS | 70.0% | |
AAAAAGCCAGCCCCGGGCCG+GGG | + | chr6_3:22379478-22379497 | Msa0944950:CDS | 70.0% | |
TTCTATGCCGACCCCGGCCC+GGG | - | chr6_3:22379492-22379511 | None:intergenic | 70.0% | |
GGGTTGCGGGCGGAGAAGAG+CGG | + | chr6_3:22379556-22379575 | Msa0944950:CDS | 70.0% | |
GGGCGGAGAAGAGCGGACGT+GGG | + | chr6_3:22379563-22379582 | Msa0944950:intron | 70.0% | |
GGCGGAGAAGAGCGGACGTG+GGG | + | chr6_3:22379564-22379583 | Msa0944950:intron | 70.0% | |
GCGGACGTGGGGACTCAGAC+CGG | + | chr6_3:22379575-22379594 | Msa0944950:intron | 70.0% | |
CGGACGTGGGGACTCAGACC+GGG | + | chr6_3:22379576-22379595 | Msa0944950:intron | 70.0% | |
GGACGTGGGGACTCAGACCG+GGG | + | chr6_3:22379577-22379596 | Msa0944950:intron | 70.0% | |
AGACCCAGCAGCTGCCGGTC+GGG | - | chr6_3:22379834-22379853 | None:intergenic | 70.0% | |
GAGACCCAGCAGCTGCCGGT+CGG | - | chr6_3:22379835-22379854 | None:intergenic | 70.0% | |
TGGGGAGACCCAGCAGCTGC+CGG | - | chr6_3:22379839-22379858 | None:intergenic | 70.0% | |
ACAGCTCGGGCCGAAGACCG+GGG | - | chr6_3:22379877-22379896 | None:intergenic | 70.0% | |
! | TCGCCCCACGTACGGTTCGG+AGG | + | chr6_3:22379910-22379929 | Msa0944950:CDS | 70.0% |
CGGCCTCCGAACCGTACGTG+GGG | - | chr6_3:22379916-22379935 | None:intergenic | 70.0% | |
CTCGGCCTCCGAACCGTACG+TGG | - | chr6_3:22379918-22379937 | None:intergenic | 70.0% | |
GCACGGCTTTCGACCGGGAC+GGG | + | chr6_3:22380802-22380821 | Msa0944950:CDS | 70.0% | |
AAGCCCAGAGCAAGGGGGGC+TGG | + | chr6_3:22380950-22380969 | Msa0944950:intron | 70.0% | |
AGCCCAGAGCAAGGGGGGCT+GGG | + | chr6_3:22380951-22380970 | Msa0944950:intron | 70.0% | |
TTCCCACCGCGCTCACGGCC+CGG | - | chr6_3:22379448-22379467 | None:intergenic | 75.0% | |
GGCCGTGAGCGCGGTGGGAA+CGG | + | chr6_3:22379448-22379467 | Msa0944950:CDS | 75.0% | |
GCCGTGAGCGCGGTGGGAAC+GGG | + | chr6_3:22379449-22379468 | Msa0944950:CDS | 75.0% | |
GCCCGTTCCCACCGCGCTCA+CGG | - | chr6_3:22379453-22379472 | None:intergenic | 75.0% | |
!!! | CCGGCCCGGGGCTGGCTTTT+TGG | - | chr6_3:22379479-22379498 | None:intergenic | 75.0% |
TCTATGCCGACCCCGGCCCG+GGG | - | chr6_3:22379491-22379510 | None:intergenic | 75.0% | |
CGGGCGGAGAAGAGCGGACG+TGG | + | chr6_3:22379562-22379581 | Msa0944950:intron | 75.0% | |
ATGGGCGGGCACGAGCGGTC+TGG | + | chr6_3:22379643-22379662 | Msa0944950:intron | 75.0% | |
GACCCAGCAGCTGCCGGTCG+GGG | - | chr6_3:22379833-22379852 | None:intergenic | 75.0% | |
CAGCTCGGGCCGAAGACCGG+GGG | - | chr6_3:22379876-22379895 | None:intergenic | 75.0% | |
GCCCAGAGCAAGGGGGGCTG+GGG | + | chr6_3:22380952-22380971 | Msa0944950:intron | 75.0% | |
CCCCCAGCCCCCCTTGCTCT+GGG | - | chr6_3:22380956-22380975 | None:intergenic | 75.0% | |
CCCAGAGCAAGGGGGGCTGG+GGG | + | chr6_3:22380953-22380972 | Msa0944950:CDS | 75.0% | |
CCAGAGCAAGGGGGGCTGGG+GGG | + | chr6_3:22380954-22380973 | Msa0944950:CDS | 75.0% | |
CAGAGCAAGGGGGGCTGGGG+GGG | + | chr6_3:22380955-22380974 | Msa0944950:CDS | 75.0% | |
AGAGCAAGGGGGGCTGGGGG+GGG | + | chr6_3:22380956-22380975 | Msa0944950:CDS | 75.0% | |
!!! | CGGCCCGGCTGGCCTTCCAG+CGG | - | chr6_3:22379433-22379452 | None:intergenic | 80.0% |
! | AGCCGGGCCGTGAGCGCGGT+GGG | + | chr6_3:22379443-22379462 | Msa0944950:CDS | 80.0% |
! | AGCAGCTGCCGGTCGGGGCG+GGG | - | chr6_3:22379828-22379847 | None:intergenic | 80.0% |
! | CAGCAGCTGCCGGTCGGGGC+GGG | - | chr6_3:22379829-22379848 | None:intergenic | 80.0% |
! | CCAGCAGCTGCCGGTCGGGG+CGG | - | chr6_3:22379830-22379849 | None:intergenic | 80.0% |
! | CGCCCCGACCGGCAGCTGCT+GGG | + | chr6_3:22379828-22379847 | Msa0944950:CDS | 80.0% |
! | CCCCCCAGCCCCCCTTGCTC+TGG | - | chr6_3:22380957-22380976 | None:intergenic | 80.0% |
! | GGCCAGCCGGGCCGTGAGCG+CGG | + | chr6_3:22379439-22379458 | Msa0944950:intron | 85.0% |
! | CACCGCGCTCACGGCCCGGC+TGG | - | chr6_3:22379444-22379463 | None:intergenic | 85.0% |
! | CAGCCGGGCCGTGAGCGCGG+TGG | + | chr6_3:22379442-22379461 | Msa0944950:CDS | 85.0% |
! | AGCCAGCCCCGGGCCGGGGT+CGG | + | chr6_3:22379482-22379501 | Msa0944950:CDS | 85.0% |
! | CCGCCCCGACCGGCAGCTGC+TGG | + | chr6_3:22379827-22379846 | Msa0944950:CDS | 85.0% |
! | TGCCGACCCCGGCCCGGGGC+TGG | - | chr6_3:22379487-22379506 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 22379209 | 22381669 | 22379209 | ID=Msa0944950;Name=Msa0944950 |
chr6_3 | mRNA | 22379209 | 22381669 | 22379209 | ID=Msa0944950-mRNA-1;Parent=Msa0944950;Name=Msa0944950-mRNA-1;_AED=0.24;_eAED=0.32;_QI=0|0|0|1|0|0.12|8|0|475 |
chr6_3 | exon | 22379209 | 22379320 | 22379209 | ID=Msa0944950-mRNA-1:exon:6559;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22379440 | 22379580 | 22379440 | ID=Msa0944950-mRNA-1:exon:6560;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22379820 | 22380041 | 22379820 | ID=Msa0944950-mRNA-1:exon:6561;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22380057 | 22380279 | 22380057 | ID=Msa0944950-mRNA-1:exon:6562;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22380295 | 22380532 | 22380295 | ID=Msa0944950-mRNA-1:exon:6563;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22380781 | 22380904 | 22380781 | ID=Msa0944950-mRNA-1:exon:6564;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22380953 | 22381091 | 22380953 | ID=Msa0944950-mRNA-1:exon:6565;Parent=Msa0944950-mRNA-1 |
chr6_3 | exon | 22381441 | 22381669 | 22381441 | ID=Msa0944950-mRNA-1:exon:6566;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22379209 | 22379320 | 22379209 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22379440 | 22379580 | 22379440 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22379820 | 22380041 | 22379820 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22380057 | 22380279 | 22380057 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22380295 | 22380532 | 22380295 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22380781 | 22380904 | 22380781 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22380953 | 22381091 | 22380953 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
chr6_3 | CDS | 22381441 | 22381669 | 22381441 | ID=Msa0944950-mRNA-1:cds;Parent=Msa0944950-mRNA-1 |
Gene Sequence |
Protein sequence |