AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0983550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983550 MtrunA17_MTg0491381 94.340 212 2 2 111 312 1 212 3.61e-142 407
Msa0983550 MtrunA17_Chr6g0457311 93.158 190 3 2 133 312 258 447 9.17e-120 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983550 ATMG00180.1 81.865 193 25 2 130 312 254 446 2.39e-103 316

Find 159 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCGAAAATAATAATTTA+TGG 0.188271 6_4:+26630313 Msa0983550:CDS
CTGTTAGTGGACAGAGCTTC+TGG 0.208328 6_4:+26631097 Msa0983550:CDS
TATGAGGCCGGAAAGTTTAT+TGG 0.241442 6_4:-26630246 None:intergenic
AATAAAAGGCAGTTTAATTA+TGG 0.257005 6_4:-26630472 None:intergenic
GGTATACCAGCCGCCTGTTC+TGG 0.261255 6_4:-26630448 None:intergenic
CCGCCCCGACCGGCAGCTGC+TGG 0.271520 6_4:+26629891 Msa0983550:CDS
TCAGCGATTGGCATTGGTTT+TGG 0.278134 6_4:-26631073 None:intergenic
TTCTATGCCGACCCCGGCCC+GGG 0.278863 6_4:-26629553 None:intergenic
CCTGTTGCCAATAAACTTTC+CGG 0.284972 6_4:+26630239 Msa0983550:CDS
GGCTTTGCCAACACAACATT+AGG 0.291533 6_4:-26629589 None:intergenic
GAAGCATATCTATCCGTAAA+TGG 0.301221 6_4:-26630408 None:intergenic
GAGAGGCATTCTTCAACTTC+TGG 0.301504 6_4:-26631535 None:intergenic
GCAATCCATTCTTTCATTCA+TGG 0.301920 6_4:+26631120 Msa0983550:CDS
CAGCAGCTGCCGGTCGGGGC+GGG 0.304794 6_4:-26629890 None:intergenic
GCCGTGAGCGCGGTGGGAAC+GGG 0.316107 6_4:+26629513 Msa0983550:CDS
TCCAACGCAACTTATCCTTT+TGG 0.321802 6_4:-26630560 None:intergenic
TGAAATTAACAATAATAAAT+CGG 0.322581 6_4:+26631511 Msa0983550:CDS
GGCCGTGAGCGCGGTGGGAA+CGG 0.322985 6_4:+26629512 Msa0983550:CDS
TCTCTCAGTGTGGTCAGCAC+TGG 0.333171 6_4:-26629309 None:intergenic
AAGCCAACTTCTTGGGTTGC+GGG 0.342786 6_4:+26629607 Msa0983550:CDS
TGTTGGCAAAGCCAACTTCT+TGG 0.342955 6_4:+26629599 Msa0983550:CDS
ACATGAGGCGATCGTTCGTT+AGG 0.352912 6_4:-26630188 None:intergenic
AGACCCAGCAGCTGCCGGTC+GGG 0.354277 6_4:-26629895 None:intergenic
CCCACTTCTCATTCCATTTG+TGG 0.355708 6_4:+26630141 Msa0983550:CDS
ATTACTGCTGGGGTGGGGCT+CGG 0.356446 6_4:-26629997 None:intergenic
GTTCACTCAACGATTGCCTT+TGG 0.367519 6_4:+26630056 Msa0983550:CDS
GAGCCAGAGTCCGCCTTAGA+AGG 0.372563 6_4:-26631581 None:intergenic
CTCTCAGTGTGGTCAGCACT+GGG 0.376688 6_4:-26629308 None:intergenic
CAGCAGTAATGGTGCGGCTT+AGG 0.383155 6_4:+26630010 Msa0983550:CDS
GATCATCAAATTCCCACAAA+TGG 0.389159 6_4:-26630154 None:intergenic
TTTGGGTTCCGAACTCCATA+TGG 0.390141 6_4:+26630074 Msa0983550:CDS
TATACATACAAATCCATTTA+CGG 0.398392 6_4:+26630395 Msa0983550:CDS
TTCACTCAACGATTGCCTTT+GGG 0.400692 6_4:+26630057 Msa0983550:CDS
CTTAACGCCACTTCGCCAAC+TGG 0.402672 6_4:-26629351 None:intergenic
AAAGCCAACTTCTTGGGTTG+CGG 0.404798 6_4:+26629606 Msa0983550:CDS
GGATTTATGTTGGCTTCGTC+GGG 0.406463 6_4:+26630510 Msa0983550:CDS
TTGCTTGCACGGCTTTCGAC+CGG 0.410329 6_4:+26630860 Msa0983550:CDS
AGGATTTATGTTGGCTTCGT+CGG 0.413029 6_4:+26630509 Msa0983550:CDS
GACCCAGCAGCTGCCGGTCG+GGG 0.413579 6_4:-26629894 None:intergenic
CCACTTCTCATTCCATTTGT+GGG 0.416058 6_4:+26630142 Msa0983550:CDS
ATTCTATGCCGACCCCGGCC+CGG 0.419460 6_4:-26629554 None:intergenic
CTTTCGACCGGGACGGGAAG+AGG 0.420223 6_4:+26630872 Msa0983550:CDS
CGAGGTCTCGATCATTTACA+TGG 0.420959 6_4:+26630117 Msa0983550:intron
ACAGCAAAGAAGGCCTTCTA+AGG 0.428985 6_4:+26631568 Msa0983550:CDS
AGATATGCTTCGATTGGAAC+TGG 0.429623 6_4:+26630420 Msa0983550:CDS
CGTGCAAGCAAAGACGTTAG+AGG 0.430977 6_4:-26630848 None:intergenic
GCTTTGCCAACACAACATTA+GGG 0.431283 6_4:-26629588 None:intergenic
GTTGGCAAAGCCAACTTCTT+GGG 0.432759 6_4:+26629600 Msa0983550:CDS
CCGGAAAGTTTATTGGCAAC+AGG 0.434595 6_4:-26630239 None:intergenic
ATACAGCTCGGGCCGAAGAC+CGG 0.442080 6_4:-26629940 None:intergenic
CTCATATGAGAATGGAAAAC+TGG 0.445029 6_4:+26630263 Msa0983550:CDS
TTCCCACCGCGCTCACGGCC+CGG 0.445440 6_4:-26629509 None:intergenic
CGCACCATTACTGCTGGGGT+GGG 0.445863 6_4:-26630003 None:intergenic
CTACCGCTGGAAGGCCAGCC+GGG 0.449228 6_4:+26629491 Msa0983550:intron
CATTCATGGACGGTCACTTA+GGG 0.451324 6_4:+26631134 Msa0983550:CDS
GCCAATCGCTGATCTGTTAG+TGG 0.452923 6_4:+26631084 Msa0983550:CDS
GAAATTAACAATAATAAATC+GGG 0.458057 6_4:+26631512 Msa0983550:CDS
CCGATGAAGGAGAAACTTGC+TGG 0.458697 6_4:+26631641 Msa0983550:CDS
CCGCACCATTACTGCTGGGG+TGG 0.460417 6_4:-26630004 None:intergenic
ACGGATAGATATGCTTCGAT+TGG 0.460582 6_4:+26630414 Msa0983550:CDS
TCATTCATGGACGGTCACTT+AGG 0.462564 6_4:+26631133 Msa0983550:CDS
AACAACGCTCCTTCCCCATA+TGG 0.463316 6_4:-26630089 None:intergenic
GGGTTCTTCCCTCTTGTCCT+CGG 0.463897 6_4:-26631667 None:intergenic
CTCCTTCCCCATATGGAGTT+CGG 0.467009 6_4:-26630082 None:intergenic
CTCTAACGTCTTTGCTTGCA+CGG 0.470171 6_4:+26630849 Msa0983550:CDS
AACAGATCAGCGATTGGCAT+TGG 0.472540 6_4:-26631079 None:intergenic
AACTCGCCCCACGTACGGTT+CGG 0.472758 6_4:+26629971 Msa0983550:CDS
CCAGCAGCTGCCGGTCGGGG+CGG 0.473246 6_4:-26629891 None:intergenic
CATTTGTAAGAGTCCTCCTC+AGG 0.476570 6_4:+26631607 Msa0983550:CDS
GAGACCCAGCAGCTGCCGGT+CGG 0.477652 6_4:-26629896 None:intergenic
TGCTTGCACGGCTTTCGACC+GGG 0.478724 6_4:+26630861 Msa0983550:CDS
ACTACCGCTGGAAGGCCAGC+CGG 0.483155 6_4:+26629490 Msa0983550:intron
AAGCTTATCCCCGCCCCGAC+CGG 0.485515 6_4:+26629881 Msa0983550:intron
TGTTAGTGGACAGAGCTTCT+GGG 0.489545 6_4:+26631098 Msa0983550:CDS
TTGGGTTCCGAACTCCATAT+GGG 0.491526 6_4:+26630075 Msa0983550:CDS
ACCTTACCTTTATCGCCCGT+CGG 0.491998 6_4:+26630938 Msa0983550:CDS
TGCATCTTTCCACACAGCAT+TGG 0.492653 6_4:+26630904 Msa0983550:CDS
AGCAGACGTAGGCTTCTAAT+GGG 0.496092 6_4:-26631726 None:intergenic
CAGCCGGGCCGTGAGCGCGG+TGG 0.498669 6_4:+26629506 Msa0983550:CDS
AAAAGGCAGTTTAATTATGG+TGG 0.498772 6_4:-26630469 None:intergenic
TGCACGGCTTTCGACCGGGA+CGG 0.500492 6_4:+26630865 Msa0983550:CDS
TCTTCGGCCCGAGCTGTATG+AGG 0.501176 6_4:+26629944 Msa0983550:CDS
CCGCCCGCAACCCAAGAAGT+TGG 0.504276 6_4:-26629610 None:intergenic
TATTCGGATAGGATTTATGT+TGG 0.504584 6_4:+26630500 Msa0983550:CDS
CTAAGCCGCACCATTACTGC+TGG 0.504746 6_4:-26630009 None:intergenic
ACACAGATGGACAGCAAAGA+AGG 0.509516 6_4:+26631558 Msa0983550:CDS
AGGCCTTCTAAGGCGGACTC+TGG 0.509544 6_4:+26631578 Msa0983550:CDS
GAGCCCCACCCCAGCAGTAA+TGG 0.510043 6_4:+26629999 Msa0983550:CDS
TGCGAACCTTGACGCCCGAC+GGG 0.510569 6_4:-26630953 None:intergenic
AGTTTCTGCCTCATACAGCT+CGG 0.515951 6_4:-26629952 None:intergenic
TGGGGAGACCCAGCAGCTGC+CGG 0.516111 6_4:-26629900 None:intergenic
GGAACTGGAAGTTCCAGAAC+AGG 0.517306 6_4:+26630435 Msa0983550:CDS
CCTTACCTTTATCGCCCGTC+GGG 0.525411 6_4:+26630939 Msa0983550:CDS
CCAGCAAGTTTCTCCTTCAT+CGG 0.526011 6_4:-26631641 None:intergenic
CATGAGGCGATCGTTCGTTA+GGG 0.530158 6_4:-26630187 None:intergenic
ACCGTCCATGAATGAAAGAA+TGG 0.534673 6_4:-26631125 None:intergenic
TTTGTTACGTCAGCTCCAAA+AGG 0.535085 6_4:+26630545 Msa0983550:CDS
GCACCATTACTGCTGGGGTG+GGG 0.538302 6_4:-26630002 None:intergenic
TTTCCGGCCTCATATGAGAA+TGG 0.538939 6_4:+26630255 Msa0983550:CDS
CGGGCGATAAAGGTAAGGTA+AGG 0.541179 6_4:-26630934 None:intergenic
GGCACGAGATTGTCCGATGA+AGG 0.542322 6_4:+26631628 Msa0983550:CDS
CCTTCATTCTATGCCGACCC+CGG 0.542373 6_4:-26629559 None:intergenic
TCCATTCTTTCATTCATGGA+CGG 0.545247 6_4:+26631124 Msa0983550:CDS
CATCTCTCCTAAACTTCCCC+CGG 0.547799 6_4:+26629921 Msa0983550:CDS
GTTTCTGCCTCATACAGCTC+GGG 0.549518 6_4:-26629951 None:intergenic
GAGGAAACCTCTTCCCGTCC+CGG 0.552826 6_4:-26630879 None:intergenic
AACTGTAACGGATTCACCCT+AGG 0.553495 6_4:-26631689 None:intergenic
TTGCTGTCCATCTGTGTGAG+AGG 0.557091 6_4:-26631552 None:intergenic
TGGGTGTAAGCCTCGCTGCT+CGG 0.557420 6_4:+26629280 Msa0983550:CDS
TGCTGGTTGCCGAGGACAAG+AGG 0.565924 6_4:+26631658 Msa0983550:CDS
CGGGGTCGGCATAGAATGAA+GGG 0.567642 6_4:+26629560 Msa0983550:CDS
TTTATGTTGGCTTCGTCGGG+AGG 0.568263 6_4:+26630513 Msa0983550:CDS
GCAGAAACTCGCCCCACGTA+CGG 0.568645 6_4:+26629966 Msa0983550:CDS
TTTCCATTCTCATATGAGGC+CGG 0.569642 6_4:-26630258 None:intergenic
GGGTGAATCCGTTACAGTTG+CGG 0.572733 6_4:+26631693 Msa0983550:CDS
AGGCGATCGTTCGTTAGGGA+CGG 0.574187 6_4:-26630183 None:intergenic
TAAGCCGCACCATTACTGCT+GGG 0.575414 6_4:-26630008 None:intergenic
CCCACAAATGGAATGAGAAG+TGG 0.576883 6_4:-26630142 None:intergenic
ACTGTAACGGATTCACCCTA+GGG 0.580403 6_4:-26631688 None:intergenic
GAGAAACTTGCTGGTTGCCG+AGG 0.584163 6_4:+26631650 Msa0983550:CDS
AAGAATGCCTCTCACACAGA+TGG 0.589254 6_4:+26631545 Msa0983550:CDS
GGACAATCTCGTGCCTGAGG+AGG 0.591046 6_4:-26631620 None:intergenic
AACAACGAGCACGACTGAAG+TGG 0.592537 6_4:+26630371 Msa0983550:CDS
TCGCCCCACGTACGGTTCGG+AGG 0.595092 6_4:+26629974 Msa0983550:CDS
ATCGGACAATCTCGTGCCTG+AGG 0.595328 6_4:-26631623 None:intergenic
TCCACTAACAGATCAGCGAT+TGG 0.597249 6_4:-26631085 None:intergenic
TCCAAAAGGATAAGTTGCGT+TGG 0.598164 6_4:+26630559 Msa0983550:CDS
CCAACTTCTTGGGTTGCGGG+CGG 0.601762 6_4:+26629610 Msa0983550:CDS
TTCCGAACTCCATATGGGGA+AGG 0.601852 6_4:+26630080 Msa0983550:CDS
CCACAAATGGAATGAGAAGT+GGG 0.607621 6_4:-26630141 None:intergenic
TTGGATGAACTAATGCGAAT+GGG 0.608426 6_4:+26629261 None:intergenic
GGGTTGCGGGCGGAGAAGAG+CGG 0.611745 6_4:+26629620 Msa0983550:CDS
GGGCGATAAAGGTAAGGTAA+GGG 0.613080 6_4:-26630933 None:intergenic
TTTGGATGAACTAATGCGAA+TGG 0.616157 6_4:+26629260 None:intergenic
GGTAATGCCAGTTGGCGAAG+TGG 0.617022 6_4:+26629344 Msa0983550:CDS
AAAGTTTATTGGCAACAGGT+CGG 0.617299 6_4:-26630235 None:intergenic
GGATGGCCCTAATGTTGTGT+TGG 0.624287 6_4:+26629582 Msa0983550:CDS
CCACCCCAGCAGTAATGGTG+CGG 0.624478 6_4:+26630004 Msa0983550:CDS
AAAGCGCAGGTAATGCCAGT+TGG 0.627476 6_4:+26629336 Msa0983550:CDS
CGGCCTCCGAACCGTACGTG+GGG 0.627484 6_4:-26629977 None:intergenic
GCAAAGAAGGCCTTCTAAGG+CGG 0.631599 6_4:+26631571 Msa0983550:CDS
CGCTTTCGTCTCTCTCAGTG+TGG 0.633261 6_4:-26629319 None:intergenic
ATTCATCATGCTCAAACATG+AGG 0.643382 6_4:-26630203 None:intergenic
GCTGGTTGCCGAGGACAAGA+GGG 0.644222 6_4:+26631659 Msa0983550:CDS
TGGGTTCCGAACTCCATATG+GGG 0.648864 6_4:+26630076 Msa0983550:CDS
ACAAGAGGGAAGAACCCCTA+GGG 0.649278 6_4:+26631673 Msa0983550:CDS
GACAAGAGGGAAGAACCCCT+AGG 0.649952 6_4:+26631672 Msa0983550:CDS
TCGGCATAGAATGAAGGGGA+TGG 0.655914 6_4:+26629565 Msa0983550:CDS
AAGCCGCACCATTACTGCTG+GGG 0.656288 6_4:-26630007 None:intergenic
ACTGAGAGAGACGAAAGCGC+AGG 0.664834 6_4:+26629323 Msa0983550:CDS
ACTGGAAGTTCCAGAACAGG+CGG 0.667091 6_4:+26630438 Msa0983550:CDS
CTGGGTGTTTCCGAGCAGCG+AGG 0.675742 6_4:-26629290 None:intergenic
GGGGTCGGCATAGAATGAAG+GGG 0.682209 6_4:+26629561 Msa0983550:CDS
GGGACAGAACCAATGCTGTG+TGG 0.684133 6_4:-26630913 None:intergenic
ATATGGAGTTCGGAACCCAA+AGG 0.687361 6_4:-26630072 None:intergenic
GGGGAAGTTTAGGAGAGATG+GGG 0.694692 6_4:-26629918 None:intergenic
CTGTAACGGATTCACCCTAG+GGG 0.770874 6_4:-26631687 None:intergenic
CTGTGTGGAAAGATGCAACG+AGG 0.793122 6_4:-26630898 None:intergenic
GTGGCGTTAAGCATCCCTAG+CGG 0.814346 6_4:+26629363 Msa0983550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTAACAATAATAAAT+CGG + chr6_4:26631511-26631530 Msa0983550:CDS 10.0%
!!! TATAGTATATAAATGGATTT+TGG + chr6_4:26629839-26629858 Msa0983550:intron 15.0%
!!! ATAGTATATAAATGGATTTT+GGG + chr6_4:26629840-26629859 Msa0983550:intron 15.0%
!! ATAGCGAAAATAATAATTTA+TGG + chr6_4:26630313-26630332 Msa0983550:CDS 15.0%
!!! TGCCTTTTATTTTTTTTATT+CGG + chr6_4:26630484-26630503 Msa0983550:CDS 15.0%
!! ATCCGAATAAAAAAAATAAA+AGG - chr6_4:26630489-26630508 None:intergenic 15.0%
!!! TTTATTTTTTTTATTCGGAT+AGG + chr6_4:26630489-26630508 Msa0983550:CDS 15.0%
!! AATTGCATTAAAAAAATCAA+AGG + chr6_4:26630608-26630627 Msa0983550:intron 15.0%
!! GAAATTAACAATAATAAATC+GGG + chr6_4:26631512-26631531 Msa0983550:CDS 15.0%
!!! TATTTCATCCCATTTTTTTT+CGG - chr6_4:26629796-26629815 None:intergenic 20.0%
!!! TAGTATATAAATGGATTTTG+GGG + chr6_4:26629841-26629860 Msa0983550:intron 20.0%
!! TATACATACAAATCCATTTA+CGG + chr6_4:26630395-26630414 Msa0983550:CDS 20.0%
!! AATAAAAGGCAGTTTAATTA+TGG - chr6_4:26630475-26630494 None:intergenic 20.0%
!!! AAATGCACATTTATTTTTAC+GGG - chr6_4:26631441-26631460 None:intergenic 20.0%
!!! CAAATGCACATTTATTTTTA+CGG - chr6_4:26631442-26631461 None:intergenic 20.0%
!!! ATTTCATCCCATTTTTTTTC+GGG - chr6_4:26629795-26629814 None:intergenic 25.0%
!!! AGTATATAAATGGATTTTGG+GGG + chr6_4:26629842-26629861 Msa0983550:intron 25.0%
!!! CTCTAAAGTATCTTTTTTCT+GGG - chr6_4:26630350-26630369 None:intergenic 25.0%
!!! TCTCTAAAGTATCTTTTTTC+TGG - chr6_4:26630351-26630370 None:intergenic 25.0%
! TAATGCAATTAAGAATTCCA+CGG - chr6_4:26630598-26630617 None:intergenic 25.0%
! TAAGATTGCTTAATGAGTTA+TGG - chr6_4:26630779-26630798 None:intergenic 25.0%
CTAGCGCTATAGTATATAAA+TGG + chr6_4:26629832-26629851 Msa0983550:intron 30.0%
!! GTATATAAATGGATTTTGGG+GGG + chr6_4:26629843-26629862 Msa0983550:intron 30.0%
!! TATATAAATGGATTTTGGGG+GGG + chr6_4:26629844-26629863 Msa0983550:intron 30.0%
AAAAGGCAGTTTAATTATGG+TGG - chr6_4:26630472-26630491 None:intergenic 30.0%
TATTCGGATAGGATTTATGT+TGG + chr6_4:26630500-26630519 Msa0983550:CDS 30.0%
GCAAAAATACGATAGATAAG+GGG - chr6_4:26630985-26631004 None:intergenic 30.0%
GGCAAAAATACGATAGATAA+GGG - chr6_4:26630986-26631005 None:intergenic 30.0%
CAATAAACTAATGGAAGATG+AGG - chr6_4:26631305-26631324 None:intergenic 30.0%
CGATGTTGACAATAAACTAA+TGG - chr6_4:26631314-26631333 None:intergenic 30.0%
TAGTTGTTAAGTCTTTCCTT+CGG + chr6_4:26631358-26631377 Msa0983550:intron 30.0%
TAAGAGAGCCATTCCATTTA+GGG + chr6_4:26629675-26629694 Msa0983550:intron 35.0%
!!! ATCCCATTTTTTTTCGGGAT+AGG - chr6_4:26629790-26629809 None:intergenic 35.0%
GATCATCAAATTCCCACAAA+TGG - chr6_4:26630157-26630176 None:intergenic 35.0%
ATTCATCATGCTCAAACATG+AGG - chr6_4:26630206-26630225 None:intergenic 35.0%
AAAGTTTATTGGCAACAGGT+CGG - chr6_4:26630238-26630257 None:intergenic 35.0%
! CAGTTTTCCATTCTCATATG+AGG - chr6_4:26630265-26630284 None:intergenic 35.0%
CTCATATGAGAATGGAAAAC+TGG + chr6_4:26630263-26630282 Msa0983550:CDS 35.0%
! AACTGGAGAATTTTCTGCAT+CGG + chr6_4:26630280-26630299 Msa0983550:CDS 35.0%
!!! GTATCTTTTTTCTGGGAACA+TGG - chr6_4:26630343-26630362 None:intergenic 35.0%
GAAGCATATCTATCCGTAAA+TGG - chr6_4:26630411-26630430 None:intergenic 35.0%
TCAATCAATAGAGGCTAGAT+CGG + chr6_4:26630645-26630664 Msa0983550:intron 35.0%
CTCATGTCAGTATTATCACA+GGG - chr6_4:26630730-26630749 None:intergenic 35.0%
ACTCATGTCAGTATTATCAC+AGG - chr6_4:26630731-26630750 None:intergenic 35.0%
TGATAATACTGACATGAGTC+AGG + chr6_4:26630732-26630751 Msa0983550:intron 35.0%
GGGCAAAAATACGATAGATA+AGG - chr6_4:26630987-26631006 None:intergenic 35.0%
GCAATCCATTCTTTCATTCA+TGG + chr6_4:26631120-26631139 Msa0983550:CDS 35.0%
TCCATTCTTTCATTCATGGA+CGG + chr6_4:26631124-26631143 Msa0983550:CDS 35.0%
GTTTATTGTCAACATCGTAG+AGG + chr6_4:26631317-26631336 Msa0983550:intron 35.0%
AGTTGTTAAGTCTTTCCTTC+GGG + chr6_4:26631359-26631378 Msa0983550:intron 35.0%
TGTTGTGCACTAAGAACTTT+AGG - chr6_4:26631484-26631503 None:intergenic 35.0%
GCTTTGCCAACACAACATTA+GGG - chr6_4:26629591-26629610 None:intergenic 40.0%
CTAAGAGAGCCATTCCATTT+AGG + chr6_4:26629674-26629693 Msa0983550:intron 40.0%
!!! CCATTTTTTTTCGGGATAGG+CGG - chr6_4:26629787-26629806 None:intergenic 40.0%
CGCCTATCCCGAAAAAAAAT+GGG + chr6_4:26629785-26629804 Msa0983550:intron 40.0%
TTCACTCAACGATTGCCTTT+GGG + chr6_4:26630057-26630076 Msa0983550:CDS 40.0%
CATGTAAATGATCGAGACCT+CGG - chr6_4:26630119-26630138 None:intergenic 40.0%
CCACAAATGGAATGAGAAGT+GGG - chr6_4:26630144-26630163 None:intergenic 40.0%
CCACTTCTCATTCCATTTGT+GGG + chr6_4:26630142-26630161 Msa0983550:CDS 40.0%
CCTGTTGCCAATAAACTTTC+CGG + chr6_4:26630239-26630258 Msa0983550:CDS 40.0%
TATGAGGCCGGAAAGTTTAT+TGG - chr6_4:26630249-26630268 None:intergenic 40.0%
TTTCCATTCTCATATGAGGC+CGG - chr6_4:26630261-26630280 None:intergenic 40.0%
ACGGATAGATATGCTTCGAT+TGG + chr6_4:26630414-26630433 Msa0983550:CDS 40.0%
AGATATGCTTCGATTGGAAC+TGG + chr6_4:26630420-26630439 Msa0983550:CDS 40.0%
!! AGGATTTATGTTGGCTTCGT+CGG + chr6_4:26630509-26630528 Msa0983550:CDS 40.0%
TTTGTTACGTCAGCTCCAAA+AGG + chr6_4:26630545-26630564 Msa0983550:CDS 40.0%
TCCAAAAGGATAAGTTGCGT+TGG + chr6_4:26630559-26630578 Msa0983550:CDS 40.0%
! TCCAACGCAACTTATCCTTT+TGG - chr6_4:26630563-26630582 None:intergenic 40.0%
TCAACCCTCTCAATCAATAG+AGG + chr6_4:26630636-26630655 Msa0983550:intron 40.0%
! CTAGCCTCTATTGATTGAGA+GGG - chr6_4:26630643-26630662 None:intergenic 40.0%
! TCTAGCCTCTATTGATTGAG+AGG - chr6_4:26630644-26630663 None:intergenic 40.0%
GGATAAATCCGAATGACTAG+TGG + chr6_4:26630753-26630772 Msa0983550:intron 40.0%
AGTTATGGCCACTAGTCATT+CGG - chr6_4:26630764-26630783 None:intergenic 40.0%
ACCGTCCATGAATGAAAGAA+TGG - chr6_4:26631128-26631147 None:intergenic 40.0%
! CCTCTTTGGAGATGAAAAGA+AGG - chr6_4:26631165-26631184 None:intergenic 40.0%
! CCTTCTTTTCATCTCCAAAG+AGG + chr6_4:26631162-26631181 Msa0983550:intron 40.0%
TATTGTCAACATCGTAGAGG+TGG + chr6_4:26631320-26631339 Msa0983550:intron 40.0%
AGATCAGACAAATAACCCGA+AGG - chr6_4:26631377-26631396 None:intergenic 40.0%
AAGTTCTTAGTGCACAACAG+AGG + chr6_4:26631485-26631504 Msa0983550:intron 40.0%
AGTTCTTAGTGCACAACAGA+GGG + chr6_4:26631486-26631505 Msa0983550:intron 40.0%
! TCAAAGACTTGGTTGGATGC+GGG - chr6_4:26629449-26629468 None:intergenic 45.0%
! GTCAAAGACTTGGTTGGATG+CGG - chr6_4:26629450-26629469 None:intergenic 45.0%
ATCCAACCAAGTCTTTGACC+AGG + chr6_4:26629451-26629470 Msa0983550:intron 45.0%
TCCAACCAAGTCTTTGACCA+GGG + chr6_4:26629452-26629471 Msa0983550:intron 45.0%
GGCTTTGCCAACACAACATT+AGG - chr6_4:26629592-26629611 None:intergenic 45.0%
TGTTGGCAAAGCCAACTTCT+TGG + chr6_4:26629599-26629618 Msa0983550:CDS 45.0%
GTTGGCAAAGCCAACTTCTT+GGG + chr6_4:26629600-26629619 Msa0983550:CDS 45.0%
! AAAGCCAACTTCTTGGGTTG+CGG + chr6_4:26629606-26629625 Msa0983550:CDS 45.0%
! CATTTAGGGCGAGACAGAAT+GGG + chr6_4:26629689-26629708 Msa0983550:intron 45.0%
CCGCCTATCCCGAAAAAAAA+TGG + chr6_4:26629784-26629803 Msa0983550:intron 45.0%
AGTTTCTGCCTCATACAGCT+CGG - chr6_4:26629955-26629974 None:intergenic 45.0%
GTTCACTCAACGATTGCCTT+TGG + chr6_4:26630056-26630075 Msa0983550:CDS 45.0%
ATATGGAGTTCGGAACCCAA+AGG - chr6_4:26630075-26630094 None:intergenic 45.0%
! TTTGGGTTCCGAACTCCATA+TGG + chr6_4:26630074-26630093 Msa0983550:CDS 45.0%
TTGGGTTCCGAACTCCATAT+GGG + chr6_4:26630075-26630094 Msa0983550:CDS 45.0%
CGAGGTCTCGATCATTTACA+TGG + chr6_4:26630117-26630136 Msa0983550:intron 45.0%
CCCACTTCTCATTCCATTTG+TGG + chr6_4:26630141-26630160 Msa0983550:CDS 45.0%
CCCACAAATGGAATGAGAAG+TGG - chr6_4:26630145-26630164 None:intergenic 45.0%
CCGGAAAGTTTATTGGCAAC+AGG - chr6_4:26630242-26630261 None:intergenic 45.0%
TTTCCGGCCTCATATGAGAA+TGG + chr6_4:26630255-26630274 Msa0983550:CDS 45.0%
! TGGAGAATTTTCTGCATCGG+TGG + chr6_4:26630283-26630302 Msa0983550:CDS 45.0%
!! GGATTTATGTTGGCTTCGTC+GGG + chr6_4:26630510-26630529 Msa0983550:CDS 45.0%
TTGGAATCGAGAAAGTTCCG+TGG + chr6_4:26630578-26630597 Msa0983550:intron 45.0%
ATAGAGGCTAGATCGGACTA+AGG + chr6_4:26630652-26630671 Msa0983550:intron 45.0%
GAGGAAAGGCTAAGCGAAAA+AGG - chr6_4:26630803-26630822 None:intergenic 45.0%
CGTAACGGTAGAAAGAGGAA+AGG - chr6_4:26630817-26630836 None:intergenic 45.0%
CATCTCGTAACGGTAGAAAG+AGG - chr6_4:26630822-26630841 None:intergenic 45.0%
GAGGATACTGCATCTCGTAA+CGG - chr6_4:26630832-26630851 None:intergenic 45.0%
CTCTAACGTCTTTGCTTGCA+CGG + chr6_4:26630849-26630868 Msa0983550:CDS 45.0%
TGCATCTTTCCACACAGCAT+TGG + chr6_4:26630904-26630923 Msa0983550:CDS 45.0%
GGGCGATAAAGGTAAGGTAA+GGG - chr6_4:26630936-26630955 None:intergenic 45.0%
!! TTGCTCTGGGCTTTTTGTTG+GGG - chr6_4:26631007-26631026 None:intergenic 45.0%
!! CTTGCTCTGGGCTTTTTGTT+GGG - chr6_4:26631008-26631027 None:intergenic 45.0%
CAACAAAAAGCCCAGAGCAA+GGG + chr6_4:26631007-26631026 Msa0983550:intron 45.0%
AACAAAAAGCCCAGAGCAAG+GGG + chr6_4:26631008-26631027 Msa0983550:intron 45.0%
!!! GATTGGCATTGGTTTTGGTG+GGG - chr6_4:26631071-26631090 None:intergenic 45.0%
!!! CGATTGGCATTGGTTTTGGT+GGG - chr6_4:26631072-26631091 None:intergenic 45.0%
!!! TCAGCGATTGGCATTGGTTT+TGG - chr6_4:26631076-26631095 None:intergenic 45.0%
AACAGATCAGCGATTGGCAT+TGG - chr6_4:26631082-26631101 None:intergenic 45.0%
TCCACTAACAGATCAGCGAT+TGG - chr6_4:26631088-26631107 None:intergenic 45.0%
! TGTTAGTGGACAGAGCTTCT+GGG + chr6_4:26631098-26631117 Msa0983550:CDS 45.0%
TCATTCATGGACGGTCACTT+AGG + chr6_4:26631133-26631152 Msa0983550:CDS 45.0%
CATTCATGGACGGTCACTTA+GGG + chr6_4:26631134-26631153 Msa0983550:CDS 45.0%
TTTCATCTCCAAAGAGGACG+AGG + chr6_4:26631168-26631187 Msa0983550:intron 45.0%
!! TGTTTTTGCCTCGTCCTCTT+TGG - chr6_4:26631179-26631198 None:intergenic 45.0%
AAAAACAGCGTTCCGTTGTC+CGG + chr6_4:26631192-26631211 Msa0983550:intron 45.0%
ATAGCGTTCTTCAGACCGAA+GGG - chr6_4:26631258-26631277 None:intergenic 45.0%
TATAGCGTTCTTCAGACCGA+AGG - chr6_4:26631259-26631278 None:intergenic 45.0%
TGTGCATTTGACGTAACAGC+AGG + chr6_4:26631452-26631471 Msa0983550:intron 45.0%
GTTCTTAGTGCACAACAGAG+GGG + chr6_4:26631487-26631506 Msa0983550:intron 45.0%
!! GAGAGGCATTCTTCAACTTC+TGG - chr6_4:26631538-26631557 None:intergenic 45.0%
AAGAATGCCTCTCACACAGA+TGG + chr6_4:26631545-26631564 Msa0983550:CDS 45.0%
ACACAGATGGACAGCAAAGA+AGG + chr6_4:26631558-26631577 Msa0983550:CDS 45.0%
ACAGCAAAGAAGGCCTTCTA+AGG + chr6_4:26631568-26631587 Msa0983550:CDS 45.0%
CATTTGTAAGAGTCCTCCTC+AGG + chr6_4:26631607-26631626 Msa0983550:CDS 45.0%
CCAGCAAGTTTCTCCTTCAT+CGG - chr6_4:26631644-26631663 None:intergenic 45.0%
!! ACTGTAACGGATTCACCCTA+GGG - chr6_4:26631691-26631710 None:intergenic 45.0%
!! AACTGTAACGGATTCACCCT+AGG - chr6_4:26631692-26631711 None:intergenic 45.0%
ATCGCATTCCGCAACTGTAA+CGG - chr6_4:26631704-26631723 None:intergenic 45.0%
AAAGCGCAGGTAATGCCAGT+TGG + chr6_4:26629336-26629355 Msa0983550:CDS 50.0%
! CCTCTCTTTTCGTACCGCTA+GGG - chr6_4:26629380-26629399 None:intergenic 50.0%
! ACCTCTCTTTTCGTACCGCT+AGG - chr6_4:26629381-26629400 None:intergenic 50.0%
! TCCCTGGTCAAAGACTTGGT+TGG - chr6_4:26629456-26629475 None:intergenic 50.0%
CCAAGTCTTTGACCAGGGAA+CGG + chr6_4:26629457-26629476 Msa0983550:intron 50.0%
CAAGTCTTTGACCAGGGAAC+GGG + chr6_4:26629458-26629477 Msa0983550:intron 50.0%
TAATTCCCACTACCGCTGGA+AGG + chr6_4:26629482-26629501 Msa0983550:intron 50.0%
TCGGCATAGAATGAAGGGGA+TGG + chr6_4:26629565-26629584 Msa0983550:CDS 50.0%
GGATGGCCCTAATGTTGTGT+TGG + chr6_4:26629582-26629601 Msa0983550:CDS 50.0%
! AAGCCAACTTCTTGGGTTGC+GGG + chr6_4:26629607-26629626 Msa0983550:CDS 50.0%
CTGTCTCGCCCTAAATGGAA+TGG - chr6_4:26629686-26629705 None:intergenic 50.0%
CCATTCTGTCTCGCCCTAAA+TGG - chr6_4:26629691-26629710 None:intergenic 50.0%
! CCATTTAGGGCGAGACAGAA+TGG + chr6_4:26629688-26629707 Msa0983550:intron 50.0%
GTAGTCGTCGTCTGACCAAT+TGG - chr6_4:26629741-26629760 None:intergenic 50.0%
GGGGAAGTTTAGGAGAGATG+GGG - chr6_4:26629921-26629940 None:intergenic 50.0%
GGGGGAAGTTTAGGAGAGAT+GGG - chr6_4:26629922-26629941 None:intergenic 50.0%
CATCTCTCCTAAACTTCCCC+CGG + chr6_4:26629921-26629940 Msa0983550:CDS 50.0%
GTTTCTGCCTCATACAGCTC+GGG - chr6_4:26629954-26629973 None:intergenic 50.0%
TAAGCCGCACCATTACTGCT+GGG - chr6_4:26630011-26630030 None:intergenic 50.0%
TGGGTTCCGAACTCCATATG+GGG + chr6_4:26630076-26630095 Msa0983550:CDS 50.0%
TTCCGAACTCCATATGGGGA+AGG + chr6_4:26630080-26630099 Msa0983550:CDS 50.0%
CTCCTTCCCCATATGGAGTT+CGG - chr6_4:26630085-26630104 None:intergenic 50.0%
AACAACGCTCCTTCCCCATA+TGG - chr6_4:26630092-26630111 None:intergenic 50.0%
!! AAGGAGCGTTGTTGTTTCCG+AGG + chr6_4:26630099-26630118 Msa0983550:intron 50.0%
CATGAGGCGATCGTTCGTTA+GGG - chr6_4:26630190-26630209 None:intergenic 50.0%
ACATGAGGCGATCGTTCGTT+AGG - chr6_4:26630191-26630210 None:intergenic 50.0%
AACAACGAGCACGACTGAAG+TGG + chr6_4:26630371-26630390 Msa0983550:CDS 50.0%
GGAACTGGAAGTTCCAGAAC+AGG + chr6_4:26630435-26630454 Msa0983550:CDS 50.0%
ACTGGAAGTTCCAGAACAGG+CGG + chr6_4:26630438-26630457 Msa0983550:CDS 50.0%
!! TTTATGTTGGCTTCGTCGGG+AGG + chr6_4:26630513-26630532 Msa0983550:CDS 50.0%
GATCGGACTAAGGAGAGAGA+CGG + chr6_4:26630662-26630681 Msa0983550:intron 50.0%
AGGAGAGAGACGGTTGAGTA+CGG + chr6_4:26630672-26630691 Msa0983550:intron 50.0%
GTTGAGTACGGAAGCGAAAG+CGG + chr6_4:26630684-26630703 Msa0983550:intron 50.0%
GGAAGCGAAAGCGGAGATAT+AGG + chr6_4:26630693-26630712 Msa0983550:intron 50.0%
CGTGCAAGCAAAGACGTTAG+AGG - chr6_4:26630851-26630870 None:intergenic 50.0%
CTGTGTGGAAAGATGCAACG+AGG - chr6_4:26630901-26630920 None:intergenic 50.0%
CGGGCGATAAAGGTAAGGTA+AGG - chr6_4:26630937-26630956 None:intergenic 50.0%
ACCTTACCTTTATCGCCCGT+CGG + chr6_4:26630938-26630957 Msa0983550:CDS 50.0%
!! CCTTGCTCTGGGCTTTTTGT+TGG - chr6_4:26631009-26631028 None:intergenic 50.0%
CCAACAAAAAGCCCAGAGCA+AGG + chr6_4:26631006-26631025 Msa0983550:intron 50.0%
ACAAAAAGCCCAGAGCAAGG+GGG + chr6_4:26631009-26631028 Msa0983550:intron 50.0%
GGGGGGAAAGAATGCAATTC+CGG + chr6_4:26631037-26631056 Msa0983550:CDS 50.0%
! TTTTGGTGGGGCTGAGATTC+CGG - chr6_4:26631059-26631078 None:intergenic 50.0%
!!! GCGATTGGCATTGGTTTTGG+TGG - chr6_4:26631073-26631092 None:intergenic 50.0%
GCCAATCGCTGATCTGTTAG+TGG + chr6_4:26631084-26631103 Msa0983550:CDS 50.0%
! CTGTTAGTGGACAGAGCTTC+TGG + chr6_4:26631097-26631116 Msa0983550:CDS 50.0%
AAAACAGCGTTCCGTTGTCC+GGG + chr6_4:26631193-26631212 Msa0983550:intron 50.0%
AGATGAGGTTCATTGCTCGC+TGG - chr6_4:26631290-26631309 None:intergenic 50.0%
AGTGTTTGAGCGCGAGAACA+CGG + chr6_4:26631403-26631422 Msa0983550:intron 50.0%
TTGCTGTCCATCTGTGTGAG+AGG - chr6_4:26631555-26631574 None:intergenic 50.0%
! GCAAAGAAGGCCTTCTAAGG+CGG + chr6_4:26631571-26631590 Msa0983550:CDS 50.0%
CCGATGAAGGAGAAACTTGC+TGG + chr6_4:26631641-26631660 Msa0983550:CDS 50.0%
ACAAGAGGGAAGAACCCCTA+GGG + chr6_4:26631673-26631692 Msa0983550:CDS 50.0%
!! CTGTAACGGATTCACCCTAG+GGG - chr6_4:26631690-26631709 None:intergenic 50.0%
GGGTGAATCCGTTACAGTTG+CGG + chr6_4:26631693-26631712 Msa0983550:CDS 50.0%
CTCTCAGTGTGGTCAGCACT+GGG - chr6_4:26629311-26629330 None:intergenic 55.0%
TCTCTCAGTGTGGTCAGCAC+TGG - chr6_4:26629312-26629331 None:intergenic 55.0%
CGCTTTCGTCTCTCTCAGTG+TGG - chr6_4:26629322-26629341 None:intergenic 55.0%
! ACTGAGAGAGACGAAAGCGC+AGG + chr6_4:26629323-26629342 Msa0983550:CDS 55.0%
GGTAATGCCAGTTGGCGAAG+TGG + chr6_4:26629344-26629363 Msa0983550:CDS 55.0%
CTTAACGCCACTTCGCCAAC+TGG - chr6_4:26629354-26629373 None:intergenic 55.0%
GTGGCGTTAAGCATCCCTAG+CGG + chr6_4:26629363-26629382 Msa0983550:CDS 55.0%
CCCTAGCGGTACGAAAAGAG+AGG + chr6_4:26629377-26629396 Msa0983550:intron 55.0%
CCGTTCCCTGGTCAAAGACT+TGG - chr6_4:26629460-26629479 None:intergenic 55.0%
GTGGGAATTATCCCGTTCCC+TGG - chr6_4:26629472-26629491 None:intergenic 55.0%
GGGATAATTCCCACTACCGC+TGG + chr6_4:26629478-26629497 Msa0983550:intron 55.0%
CCTTCATTCTATGCCGACCC+CGG - chr6_4:26629562-26629581 None:intergenic 55.0%
CGGGGTCGGCATAGAATGAA+GGG + chr6_4:26629560-26629579 Msa0983550:CDS 55.0%
GGGGTCGGCATAGAATGAAG+GGG + chr6_4:26629561-26629580 Msa0983550:CDS 55.0%
TTAGGGCGAGACAGAATGGG+CGG + chr6_4:26629692-26629711 Msa0983550:intron 55.0%
CGTCGTCTGACCAATTGGCT+CGG - chr6_4:26629736-26629755 None:intergenic 55.0%
CGGGGGAAGTTTAGGAGAGA+TGG - chr6_4:26629923-26629942 None:intergenic 55.0%
CCTAAACTTCCCCCGGTCTT+CGG + chr6_4:26629928-26629947 Msa0983550:CDS 55.0%
AAGCCGCACCATTACTGCTG+GGG - chr6_4:26630010-26630029 None:intergenic 55.0%
CTAAGCCGCACCATTACTGC+TGG - chr6_4:26630012-26630031 None:intergenic 55.0%
CAGCAGTAATGGTGCGGCTT+AGG + chr6_4:26630010-26630029 Msa0983550:CDS 55.0%
AGGCGATCGTTCGTTAGGGA+CGG - chr6_4:26630186-26630205 None:intergenic 55.0%
TTGCTTGCACGGCTTTCGAC+CGG + chr6_4:26630860-26630879 Msa0983550:CDS 55.0%
GGGACAGAACCAATGCTGTG+TGG - chr6_4:26630916-26630935 None:intergenic 55.0%
CCTTACCTTTATCGCCCGTC+GGG + chr6_4:26630939-26630958 Msa0983550:CDS 55.0%
CAAAAAGCCCAGAGCAAGGG+GGG + chr6_4:26631010-26631029 Msa0983550:intron 55.0%
GAGGTTCATTGCTCGCTGGT+AGG - chr6_4:26631286-26631305 None:intergenic 55.0%
ATCGGACAATCTCGTGCCTG+AGG - chr6_4:26631626-26631645 None:intergenic 55.0%
GGCACGAGATTGTCCGATGA+AGG + chr6_4:26631628-26631647 Msa0983550:CDS 55.0%
!! GAGAAACTTGCTGGTTGCCG+AGG + chr6_4:26631650-26631669 Msa0983550:CDS 55.0%
GGGTTCTTCCCTCTTGTCCT+CGG - chr6_4:26631670-26631689 None:intergenic 55.0%
GACAAGAGGGAAGAACCCCT+AGG + chr6_4:26631672-26631691 Msa0983550:CDS 55.0%
TGGGTGTAAGCCTCGCTGCT+CGG + chr6_4:26629280-26629299 Msa0983550:CDS 60.0%
GCTTCCCAAAAAGCCAGCCC+CGG + chr6_4:26629535-26629554 Msa0983550:CDS 60.0%
CTTCCCAAAAAGCCAGCCCC+GGG + chr6_4:26629536-26629555 Msa0983550:CDS 60.0%
CCGGGGTCGGCATAGAATGA+AGG + chr6_4:26629559-26629578 Msa0983550:CDS 60.0%
! CCAACTTCTTGGGTTGCGGG+CGG + chr6_4:26629610-26629629 Msa0983550:CDS 60.0%
CTCTTAGTTACGCTGCGCCC+CGG - chr6_4:26629661-26629680 None:intergenic 60.0%
TAGGGCGAGACAGAATGGGC+GGG + chr6_4:26629693-26629712 Msa0983550:intron 60.0%
GGTCTGGTGTCCGAGCCAAT+TGG + chr6_4:26629723-26629742 Msa0983550:intron 60.0%
CCGAAGACCGGGGGAAGTTT+AGG - chr6_4:26629931-26629950 None:intergenic 60.0%
ATACAGCTCGGGCCGAAGAC+CGG - chr6_4:26629943-26629962 None:intergenic 60.0%
TCTTCGGCCCGAGCTGTATG+AGG + chr6_4:26629944-26629963 Msa0983550:CDS 60.0%
GCAGAAACTCGCCCCACGTA+CGG + chr6_4:26629966-26629985 Msa0983550:CDS 60.0%
AACTCGCCCCACGTACGGTT+CGG + chr6_4:26629971-26629990 Msa0983550:CDS 60.0%
ATTACTGCTGGGGTGGGGCT+CGG - chr6_4:26630000-26630019 None:intergenic 60.0%
GCACCATTACTGCTGGGGTG+GGG - chr6_4:26630005-26630024 None:intergenic 60.0%
CGCACCATTACTGCTGGGGT+GGG - chr6_4:26630006-26630025 None:intergenic 60.0%
CCACCCCAGCAGTAATGGTG+CGG + chr6_4:26630004-26630023 Msa0983550:CDS 60.0%
GAAGTTCCAGAACAGGCGGC+TGG + chr6_4:26630442-26630461 Msa0983550:CDS 60.0%
GGTATACCAGCCGCCTGTTC+TGG - chr6_4:26630451-26630470 None:intergenic 60.0%
TGCTTGCACGGCTTTCGACC+GGG + chr6_4:26630861-26630880 Msa0983550:CDS 60.0%
GAGGAAACCTCTTCCCGTCC+CGG - chr6_4:26630882-26630901 None:intergenic 60.0%
CCCGACGGGCGATAAAGGTA+AGG - chr6_4:26630942-26630961 None:intergenic 60.0%
ATGCGAACCTTGACGCCCGA+CGG - chr6_4:26630957-26630976 None:intergenic 60.0%
! TTCCGTTGTCCGGGTGCTGT+TGG + chr6_4:26631202-26631221 Msa0983550:intron 60.0%
GTCCAACAGCACCCGGACAA+CGG - chr6_4:26631207-26631226 None:intergenic 60.0%
!! GTTGTCCGGGTGCTGTTGGA+CGG + chr6_4:26631206-26631225 Msa0983550:intron 60.0%
!! GGACGGACGGACTATTCTGC+TGG + chr6_4:26631223-26631242 Msa0983550:intron 60.0%
!! GGACGGACTATTCTGCTGGC+AGG + chr6_4:26631227-26631246 Msa0983550:intron 60.0%
TGCTGGCAGGTGATGCCCTT+CGG + chr6_4:26631240-26631259 Msa0983550:intron 60.0%
!! AGGCCTTCTAAGGCGGACTC+TGG + chr6_4:26631578-26631597 Msa0983550:CDS 60.0%
GAGCCAGAGTCCGCCTTAGA+AGG - chr6_4:26631584-26631603 None:intergenic 60.0%
GGACAATCTCGTGCCTGAGG+AGG - chr6_4:26631623-26631642 None:intergenic 60.0%
! TGCTGGTTGCCGAGGACAAG+AGG + chr6_4:26631658-26631677 Msa0983550:CDS 60.0%
GCTGGTTGCCGAGGACAAGA+GGG + chr6_4:26631659-26631678 Msa0983550:CDS 60.0%
CTGGGTGTTTCCGAGCAGCG+AGG - chr6_4:26629293-26629312 None:intergenic 65.0%
TACGTCCGTACCGCTCCTCG+CGG + chr6_4:26629416-26629435 Msa0983550:intron 65.0%
CTACTCCGCGAGGAGCGGTA+CGG - chr6_4:26629424-26629443 None:intergenic 65.0%
GGGATCTACTCCGCGAGGAG+CGG - chr6_4:26629429-26629448 None:intergenic 65.0%
GATGCGGGATCTACTCCGCG+AGG - chr6_4:26629434-26629453 None:intergenic 65.0%
!! GCTGGCCTTCCAGCGGTAGT+GGG - chr6_4:26629490-26629509 None:intergenic 65.0%
ACTACCGCTGGAAGGCCAGC+CGG + chr6_4:26629490-26629509 Msa0983550:intron 65.0%
ATTCTATGCCGACCCCGGCC+CGG - chr6_4:26629557-26629576 None:intergenic 65.0%
CCGCCCGCAACCCAAGAAGT+TGG - chr6_4:26629613-26629632 None:intergenic 65.0%
ACAGAATGGGCGGGCACGAG+CGG + chr6_4:26629702-26629721 Msa0983550:intron 65.0%
AAGCTTATCCCCGCCCCGAC+CGG + chr6_4:26629881-26629900 Msa0983550:intron 65.0%
TACAGCTCGGGCCGAAGACC+GGG - chr6_4:26629942-26629961 None:intergenic 65.0%
TCGGCCTCCGAACCGTACGT+GGG - chr6_4:26629981-26630000 None:intergenic 65.0%
GAGCCCCACCCCAGCAGTAA+TGG + chr6_4:26629999-26630018 Msa0983550:CDS 65.0%
CCGCACCATTACTGCTGGGG+TGG - chr6_4:26630007-26630026 None:intergenic 65.0%
TGCACGGCTTTCGACCGGGA+CGG + chr6_4:26630865-26630884 Msa0983550:CDS 65.0%
CTTTCGACCGGGACGGGAAG+AGG + chr6_4:26630872-26630891 Msa0983550:CDS 65.0%
TGACGCCCGACGGGCGATAA+AGG - chr6_4:26630947-26630966 None:intergenic 65.0%
TTATCGCCCGTCGGGCGTCA+AGG + chr6_4:26630947-26630966 Msa0983550:CDS 65.0%
TGCGAACCTTGACGCCCGAC+GGG - chr6_4:26630956-26630975 None:intergenic 65.0%
!! TCCGGGTGCTGTTGGACGGA+CGG + chr6_4:26631210-26631229 Msa0983550:intron 65.0%
TCCGTCCGTCCAACAGCACC+CGG - chr6_4:26631214-26631233 None:intergenic 65.0%
!! GGCTGGCCTTCCAGCGGTAG+TGG - chr6_4:26629491-26629510 None:intergenic 70.0%
CTACCGCTGGAAGGCCAGCC+GGG + chr6_4:26629491-26629510 Msa0983550:intron 70.0%
!!! CGGCCCGGGGCTGGCTTTTT+GGG - chr6_4:26629542-26629561 None:intergenic 70.0%
CCAAAAAGCCAGCCCCGGGC+CGG + chr6_4:26629540-26629559 Msa0983550:CDS 70.0%
CAAAAAGCCAGCCCCGGGCC+GGG + chr6_4:26629541-26629560 Msa0983550:CDS 70.0%
AAAAAGCCAGCCCCGGGCCG+GGG + chr6_4:26629542-26629561 Msa0983550:CDS 70.0%
TTCTATGCCGACCCCGGCCC+GGG - chr6_4:26629556-26629575 None:intergenic 70.0%
GGGTTGCGGGCGGAGAAGAG+CGG + chr6_4:26629620-26629639 Msa0983550:CDS 70.0%
GGGCGGAGAAGAGCGGACGT+GGG + chr6_4:26629627-26629646 Msa0983550:intron 70.0%
GGCGGAGAAGAGCGGACGTG+GGG + chr6_4:26629628-26629647 Msa0983550:intron 70.0%
GCGGACGTGGGGACTCAGAC+CGG + chr6_4:26629639-26629658 Msa0983550:intron 70.0%
CGGACGTGGGGACTCAGACC+GGG + chr6_4:26629640-26629659 Msa0983550:intron 70.0%
GGACGTGGGGACTCAGACCG+GGG + chr6_4:26629641-26629660 Msa0983550:intron 70.0%
AGACCCAGCAGCTGCCGGTC+GGG - chr6_4:26629898-26629917 None:intergenic 70.0%
GAGACCCAGCAGCTGCCGGT+CGG - chr6_4:26629899-26629918 None:intergenic 70.0%
TGGGGAGACCCAGCAGCTGC+CGG - chr6_4:26629903-26629922 None:intergenic 70.0%
ACAGCTCGGGCCGAAGACCG+GGG - chr6_4:26629941-26629960 None:intergenic 70.0%
! TCGCCCCACGTACGGTTCGG+AGG + chr6_4:26629974-26629993 Msa0983550:CDS 70.0%
CGGCCTCCGAACCGTACGTG+GGG - chr6_4:26629980-26629999 None:intergenic 70.0%
CTCGGCCTCCGAACCGTACG+TGG - chr6_4:26629982-26630001 None:intergenic 70.0%
GCACGGCTTTCGACCGGGAC+GGG + chr6_4:26630866-26630885 Msa0983550:CDS 70.0%
AAGCCCAGAGCAAGGGGGGC+TGG + chr6_4:26631014-26631033 Msa0983550:intron 70.0%
AGCCCAGAGCAAGGGGGGCT+GGG + chr6_4:26631015-26631034 Msa0983550:intron 70.0%
TTCCCACCGCGCTCACGGCC+CGG - chr6_4:26629512-26629531 None:intergenic 75.0%
GGCCGTGAGCGCGGTGGGAA+CGG + chr6_4:26629512-26629531 Msa0983550:CDS 75.0%
GCCGTGAGCGCGGTGGGAAC+GGG + chr6_4:26629513-26629532 Msa0983550:CDS 75.0%
GCCCGTTCCCACCGCGCTCA+CGG - chr6_4:26629517-26629536 None:intergenic 75.0%
!!! CCGGCCCGGGGCTGGCTTTT+TGG - chr6_4:26629543-26629562 None:intergenic 75.0%
TCTATGCCGACCCCGGCCCG+GGG - chr6_4:26629555-26629574 None:intergenic 75.0%
CGGGCGGAGAAGAGCGGACG+TGG + chr6_4:26629626-26629645 Msa0983550:intron 75.0%
ATGGGCGGGCACGAGCGGTC+TGG + chr6_4:26629707-26629726 Msa0983550:intron 75.0%
GACCCAGCAGCTGCCGGTCG+GGG - chr6_4:26629897-26629916 None:intergenic 75.0%
CAGCTCGGGCCGAAGACCGG+GGG - chr6_4:26629940-26629959 None:intergenic 75.0%
GCCCAGAGCAAGGGGGGCTG+GGG + chr6_4:26631016-26631035 Msa0983550:intron 75.0%
CCCCCAGCCCCCCTTGCTCT+GGG - chr6_4:26631020-26631039 None:intergenic 75.0%
CCCAGAGCAAGGGGGGCTGG+GGG + chr6_4:26631017-26631036 Msa0983550:CDS 75.0%
CCAGAGCAAGGGGGGCTGGG+GGG + chr6_4:26631018-26631037 Msa0983550:CDS 75.0%
CAGAGCAAGGGGGGCTGGGG+GGG + chr6_4:26631019-26631038 Msa0983550:CDS 75.0%
AGAGCAAGGGGGGCTGGGGG+GGG + chr6_4:26631020-26631039 Msa0983550:CDS 75.0%
!!! CGGCCCGGCTGGCCTTCCAG+CGG - chr6_4:26629497-26629516 None:intergenic 80.0%
! AGCCGGGCCGTGAGCGCGGT+GGG + chr6_4:26629507-26629526 Msa0983550:CDS 80.0%
! AGCAGCTGCCGGTCGGGGCG+GGG - chr6_4:26629892-26629911 None:intergenic 80.0%
! CAGCAGCTGCCGGTCGGGGC+GGG - chr6_4:26629893-26629912 None:intergenic 80.0%
! CCAGCAGCTGCCGGTCGGGG+CGG - chr6_4:26629894-26629913 None:intergenic 80.0%
! CGCCCCGACCGGCAGCTGCT+GGG + chr6_4:26629892-26629911 Msa0983550:CDS 80.0%
! CCCCCCAGCCCCCCTTGCTC+TGG - chr6_4:26631021-26631040 None:intergenic 80.0%
! GGCCAGCCGGGCCGTGAGCG+CGG + chr6_4:26629503-26629522 Msa0983550:intron 85.0%
! CACCGCGCTCACGGCCCGGC+TGG - chr6_4:26629508-26629527 None:intergenic 85.0%
! CAGCCGGGCCGTGAGCGCGG+TGG + chr6_4:26629506-26629525 Msa0983550:CDS 85.0%
! AGCCAGCCCCGGGCCGGGGT+CGG + chr6_4:26629546-26629565 Msa0983550:CDS 85.0%
! CCGCCCCGACCGGCAGCTGC+TGG + chr6_4:26629891-26629910 Msa0983550:CDS 85.0%
! TGCCGACCCCGGCCCGGGGC+TGG - chr6_4:26629551-26629570 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 26629273 26631733 26629273 ID=Msa0983550;Name=Msa0983550
chr6_4 mRNA 26629273 26631733 26629273 ID=Msa0983550-mRNA-1;Parent=Msa0983550;Name=Msa0983550-mRNA-1;_AED=0.24;_eAED=0.32;_QI=0|0|0|1|0|0.12|8|0|475
chr6_4 exon 26629273 26629384 26629273 ID=Msa0983550-mRNA-1:exon:7516;Parent=Msa0983550-mRNA-1
chr6_4 exon 26629504 26629644 26629504 ID=Msa0983550-mRNA-1:exon:7517;Parent=Msa0983550-mRNA-1
chr6_4 exon 26629884 26630105 26629884 ID=Msa0983550-mRNA-1:exon:7518;Parent=Msa0983550-mRNA-1
chr6_4 exon 26630121 26630343 26630121 ID=Msa0983550-mRNA-1:exon:7519;Parent=Msa0983550-mRNA-1
chr6_4 exon 26630359 26630596 26630359 ID=Msa0983550-mRNA-1:exon:7520;Parent=Msa0983550-mRNA-1
chr6_4 exon 26630845 26630968 26630845 ID=Msa0983550-mRNA-1:exon:7521;Parent=Msa0983550-mRNA-1
chr6_4 exon 26631017 26631155 26631017 ID=Msa0983550-mRNA-1:exon:7522;Parent=Msa0983550-mRNA-1
chr6_4 exon 26631505 26631733 26631505 ID=Msa0983550-mRNA-1:exon:7523;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26629273 26629384 26629273 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26629504 26629644 26629504 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26629884 26630105 26629884 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26630121 26630343 26630121 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26630359 26630596 26630359 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26630845 26630968 26630845 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26631017 26631155 26631017 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
chr6_4 CDS 26631505 26631733 26631505 ID=Msa0983550-mRNA-1:cds;Parent=Msa0983550-mRNA-1
Gene Sequence

>Msa0983550

ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGAGACGAAAGCGCAGGTAATGCCAGTTGGCGAAGTGGCGTTAAGCATCCCTAGCGGCCAGCCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAAGCCAGCCCCGGGCCGGGGTCGGCATAGAATGAAGGGGATGGCCCTAATGTTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCGGAGAAGAGCGGACCTTATCCCCGCCCCGACCGGCAGCTGCTGGGTCTCCCCATCTCTCCTAAACTTCCCCCGGTCTTCGGCCCGAGCTGTATGAGGCAGAAACTCGCCCCACGTACGGTTCGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCGGCTTAGGTCAACTAACACAAAGAAGATACAGTTCACTCAACGATTGCCTTTGGGTTCCGAACTCCATATGGGGAAGGAGCGTCTCGATCATTTACATGGACCCACTTCTCATTCCATTTGTGGGAATTTGATGATCTATAAACCGTCCCTAACGAACGATCGCCTCATGTTTGAGCATGATGAATCACTTCGTGCCGACCTGTTGCCAATAAACTTTCCGGCCTCATATGAGAATGGAAAACTGGAGAATTTTCTGCATCGGTGGATGAAGAATAGCGAAAATAATAATTTATGGTTGACCATATACTTTAGAGAAACAACGAGCACGACTGAAGTGGCTATACATACAAATCCATTTACGGATAGATATGCTTCGATTGGAACTGGAAGTTCCAGAACAGGCGGCTGGTATACCACCATAATTAAACTGCCTTTTATTTTTTTTATTCGGATAGGATTTATGTTGGCTTCGTCGGGAGGCTCGCGTAGTTTGTTACGTCAGCTCCAAAAGGATAAGTTGCGTTGGAATCGAGAAAGTTCCTATCCTCTAACGTCTTTGCTTGCACGGCTTTCGACCGGGACGGGAAGAGGTTTCCTCGTTGCATCTTTCCACACAGCATTGGTTCTGTCCCTTACCTTACCTTTATCGCCCGTCGGGCGTCAAGCCCAGAGCAAGGGGGGCTGGGGGGGGAAAGAATGCAATTCCGGAATCTCAGCCCCACCAAAACCAATGCCAATCGCTGATCTGTTAGTGGACAGAGCTTCTGGGCAATCCATTCTTTCATTCATGGACGGTCACTTAGGAGGGGTTGAAATTAACAATAATAAATCGGGCCAGAAGTTGAAGAATGCCTCTCACACAGATGGACAGCAAAGAAGGCCTTCTAAGGCGGACTCTGGCTCTTTCATTTGTAAGAGTCCTCCTCAGGCACGAGATTGTCCGATGAAGGAGAAACTTGCTGGTTGCCGAGGACAAGAGGGAAGAACCCCTAGGGTGAATCCGTTACAGTTGCGGAATGCGATCACCCATTAG

Protein sequence

>Msa0983550

MRMGVSLAARKHPVLTTLRETKAQVMPVGEVALSIPSGQPGRERGGNGLPKKPAPGRGRHRMKGMALMLCWQSQLLGLRAEKSGPYPRPDRQLLGLPISPKLPPVFGPSCMRQKLAPRTVRRPSPTPAVMVRLRSTNTKKIQFTQRLPLGSELHMGKERLDHLHGPTSHSICGNLMIYKPSLTNDRLMFEHDESLRADLLPINFPASYENGKLENFLHRWMKNSENNNLWLTIYFRETTSTTEVAIHTNPFTDRYASIGTGSSRTGGWYTTIIKLPFIFFIRIGFMLASSGGSRSLLRQLQKDKLRWNRESSYPLTSLLARLSTGTGRGFLVASFHTALVLSLTLPLSPVGRQAQSKGGWGGKECNSGISAPPKPMPIADLLVDRASGQSILSFMDGHLGGVEINNNKSGQKLKNASHTDGQQRRPSKADSGSFICKSPPQARDCPMKEKLAGCRGQEGRTPRVNPLQLRNAITH*