AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0908820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0908820 MtrunA17_MTg0491381 93.868 212 3 2 111 312 1 212 1.15e-140 403
Msa0908820 MtrunA17_Chr6g0457311 77.731 238 42 3 85 312 211 447 2.04e-118 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0908820 ATMG00180.1 81.347 193 26 2 130 312 254 446 4.85e-102 313

Find 159 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCGAAAATAATAATTTA+TGG 0.188271 6_2:-9930386 Msa0908820:CDS
CTGTTAGTGGACAGAGCTTC+TGG 0.208328 6_2:-9929603 Msa0908820:CDS
TATGAGGCCGGAAAGTTTAT+TGG 0.241442 6_2:+9930453 None:intergenic
AATAAAAGGCAGTTTAATTA+TGG 0.257005 6_2:+9930227 None:intergenic
GGTATACCAGCCGCCTGTTC+TGG 0.261255 6_2:+9930251 None:intergenic
CCGCCCCGACCGGCAGCTGC+TGG 0.271520 6_2:-9930808 Msa0908820:CDS
TCAGCGATTGGCATTGGTTT+TGG 0.278134 6_2:+9929627 None:intergenic
TTCTATGCCGACCCCGGCCC+GGG 0.278863 6_2:+9931146 None:intergenic
CCTGTTGCCAATAAACTTTC+CGG 0.284972 6_2:-9930460 Msa0908820:CDS
GGCTTTGCCAACACAACATT+AGG 0.291533 6_2:+9931110 None:intergenic
GAAGCATATCTATCCGTAAA+TGG 0.301221 6_2:+9930291 None:intergenic
GAGAGGCATTCTTCAACTTC+TGG 0.301504 6_2:+9929165 None:intergenic
GCAATCCATTCTTTCATTCA+TGG 0.301920 6_2:-9929580 Msa0908820:CDS
CAGCAGCTGCCGGTCGGGGC+GGG 0.304794 6_2:+9930809 None:intergenic
GCCGTGAGCGCGGTGGGAAC+GGG 0.316107 6_2:-9931186 Msa0908820:CDS
TCCAACGCAACTTATCCTTT+TGG 0.321802 6_2:+9930139 None:intergenic
TGAAATTAACAATAATAAAT+CGG 0.322581 6_2:-9929189 Msa0908820:CDS
GGCCGTGAGCGCGGTGGGAA+CGG 0.322985 6_2:-9931187 Msa0908820:CDS
TCTCTCAGTGTGGTCAGCAC+TGG 0.333171 6_2:+9931390 None:intergenic
AAGCCAACTTCTTGGGTTGC+GGG 0.342786 6_2:-9931092 Msa0908820:CDS
TGTTGGCAAAGCCAACTTCT+TGG 0.342955 6_2:-9931100 Msa0908820:CDS
ACATGAGGCGATCGTTCGTT+AGG 0.352912 6_2:+9930511 None:intergenic
AGACCCAGCAGCTGCCGGTC+GGG 0.354277 6_2:+9930804 None:intergenic
CCCACTTCTCATTCCATTTG+TGG 0.355708 6_2:-9930558 Msa0908820:CDS
ATTACTGCTGGGGTGGGGCT+CGG 0.356446 6_2:+9930702 None:intergenic
GTTCACTCAACGATTGCCTT+TGG 0.367519 6_2:-9930643 Msa0908820:CDS
GAGCCAGAGTCCGCCTTAGA+AGG 0.372563 6_2:+9929119 None:intergenic
CTCTCAGTGTGGTCAGCACT+GGG 0.376688 6_2:+9931391 None:intergenic
CAGCAGTAATGGTGCGGCTT+AGG 0.383155 6_2:-9930689 Msa0908820:CDS
GATCATCAAATTCCCACAAA+TGG 0.389159 6_2:+9930545 None:intergenic
TTTGGGTTCCGAACTCCATA+TGG 0.390141 6_2:-9930625 Msa0908820:CDS
TATACATACAAATCCATTTA+CGG 0.398392 6_2:-9930304 Msa0908820:CDS
TTCACTCAACGATTGCCTTT+GGG 0.400692 6_2:-9930642 Msa0908820:CDS
CTTAACGCCACTTCGCCAAC+TGG 0.402672 6_2:+9931348 None:intergenic
AAAGCCAACTTCTTGGGTTG+CGG 0.404798 6_2:-9931093 Msa0908820:CDS
GGATTTATGTTGGCTTCGTC+GGG 0.406463 6_2:-9930189 Msa0908820:CDS
TTGCTTGCACGGCTTTCGAC+CGG 0.410329 6_2:-9929839 Msa0908820:CDS
AGGATTTATGTTGGCTTCGT+CGG 0.413029 6_2:-9930190 Msa0908820:CDS
GACCCAGCAGCTGCCGGTCG+GGG 0.413579 6_2:+9930805 None:intergenic
CCACTTCTCATTCCATTTGT+GGG 0.416058 6_2:-9930557 Msa0908820:CDS
ATTCTATGCCGACCCCGGCC+CGG 0.419460 6_2:+9931145 None:intergenic
CTTTCGACCGGGACGGGAAG+AGG 0.420223 6_2:-9929827 Msa0908820:CDS
CGAGGTCTCGATCATTTACA+TGG 0.420959 6_2:-9930582 Msa0908820:intron
ACAGCAAAGAAGGCCTTCTA+AGG 0.428985 6_2:-9929132 Msa0908820:CDS
AGATATGCTTCGATTGGAAC+TGG 0.429623 6_2:-9930279 Msa0908820:CDS
CGTGCAAGCAAAGACGTTAG+AGG 0.430977 6_2:+9929851 None:intergenic
GCTTTGCCAACACAACATTA+GGG 0.431283 6_2:+9931111 None:intergenic
GTTGGCAAAGCCAACTTCTT+GGG 0.432759 6_2:-9931099 Msa0908820:CDS
CCGGAAAGTTTATTGGCAAC+AGG 0.434595 6_2:+9930460 None:intergenic
ATACAGCTCGGGCCGAAGAC+CGG 0.442080 6_2:+9930759 None:intergenic
CTCATATGAGAATGGAAAAC+TGG 0.445029 6_2:-9930436 Msa0908820:CDS
TTCCCACCGCGCTCACGGCC+CGG 0.445440 6_2:+9931190 None:intergenic
CGCACCATTACTGCTGGGGT+GGG 0.445863 6_2:+9930696 None:intergenic
CTACCGCTGGAAGGCCAGCC+GGG 0.449228 6_2:-9931208 Msa0908820:intron
CATTCATGGACGGTCACTTA+GGG 0.451324 6_2:-9929566 Msa0908820:intron
GCCAATCGCTGATCTGTTAG+TGG 0.452923 6_2:-9929616 Msa0908820:CDS
GAAATTAACAATAATAAATC+GGG 0.458057 6_2:-9929188 Msa0908820:CDS
CCGATGAAGGAGAAACTTGC+TGG 0.458697 6_2:-9929059 Msa0908820:CDS
CCGCACCATTACTGCTGGGG+TGG 0.460417 6_2:+9930695 None:intergenic
ACGGATAGATATGCTTCGAT+TGG 0.460582 6_2:-9930285 Msa0908820:CDS
TCATTCATGGACGGTCACTT+AGG 0.462564 6_2:-9929567 Msa0908820:CDS
AACAACGCTCCTTCCCCATA+TGG 0.463316 6_2:+9930610 None:intergenic
GGGTTCTTCCCTCTTGTCCT+CGG 0.463897 6_2:+9929033 None:intergenic
CTCCTTCCCCATATGGAGTT+CGG 0.467009 6_2:+9930617 None:intergenic
CTCTAACGTCTTTGCTTGCA+CGG 0.470171 6_2:-9929850 Msa0908820:CDS
AACAGATCAGCGATTGGCAT+TGG 0.472540 6_2:+9929621 None:intergenic
AACTCGCCCCACGTACGGTT+CGG 0.472758 6_2:-9930728 Msa0908820:CDS
CCAGCAGCTGCCGGTCGGGG+CGG 0.473246 6_2:+9930808 None:intergenic
CATTTGTAAGAGTCCTCCTC+AGG 0.476570 6_2:-9929093 Msa0908820:CDS
GAGACCCAGCAGCTGCCGGT+CGG 0.477652 6_2:+9930803 None:intergenic
TGCTTGCACGGCTTTCGACC+GGG 0.478724 6_2:-9929838 Msa0908820:CDS
ACTACCGCTGGAAGGCCAGC+CGG 0.483155 6_2:-9931209 Msa0908820:intron
AAGCTTATCCCCGCCCCGAC+CGG 0.485515 6_2:-9930818 Msa0908820:CDS
TGTTAGTGGACAGAGCTTCT+GGG 0.489545 6_2:-9929602 Msa0908820:CDS
TTGGGTTCCGAACTCCATAT+GGG 0.491526 6_2:-9930624 Msa0908820:CDS
ACCTTACCTTTATCGCCCGT+CGG 0.491998 6_2:-9929761 Msa0908820:CDS
TGCATCTTTCCACACAGCAT+TGG 0.492653 6_2:-9929795 Msa0908820:CDS
AGCAGACGTAGGCTTCTAAT+GGG 0.496092 6_2:+9928974 None:intergenic
CAGCCGGGCCGTGAGCGCGG+TGG 0.498669 6_2:-9931193 Msa0908820:CDS
AAAAGGCAGTTTAATTATGG+TGG 0.498772 6_2:+9930230 None:intergenic
TGCACGGCTTTCGACCGGGA+CGG 0.500492 6_2:-9929834 Msa0908820:CDS
TCTTCGGCCCGAGCTGTATG+AGG 0.501176 6_2:-9930755 Msa0908820:CDS
CCGCCCGCAACCCAAGAAGT+TGG 0.504276 6_2:+9931089 None:intergenic
TATTCGGATAGGATTTATGT+TGG 0.504584 6_2:-9930199 Msa0908820:CDS
CTAAGCCGCACCATTACTGC+TGG 0.504746 6_2:+9930690 None:intergenic
ACACAGATGGACAGCAAAGA+AGG 0.509516 6_2:-9929142 Msa0908820:CDS
AGGCCTTCTAAGGCGGACTC+TGG 0.509544 6_2:-9929122 Msa0908820:CDS
GAGCCCCACCCCAGCAGTAA+TGG 0.510043 6_2:-9930700 Msa0908820:CDS
TGCGAACCTTGACGCCCGAC+GGG 0.510569 6_2:+9929746 None:intergenic
AGTTTCTGCCTCATACAGCT+CGG 0.515951 6_2:+9930747 None:intergenic
TGGGGAGACCCAGCAGCTGC+CGG 0.516111 6_2:+9930799 None:intergenic
GGAACTGGAAGTTCCAGAAC+AGG 0.517306 6_2:-9930264 Msa0908820:CDS
CCTTACCTTTATCGCCCGTC+GGG 0.525411 6_2:-9929760 Msa0908820:CDS
CCAGCAAGTTTCTCCTTCAT+CGG 0.526011 6_2:+9929059 None:intergenic
CATGAGGCGATCGTTCGTTA+GGG 0.530158 6_2:+9930512 None:intergenic
ACCGTCCATGAATGAAAGAA+TGG 0.534673 6_2:+9929575 None:intergenic
TTTGTTACGTCAGCTCCAAA+AGG 0.535085 6_2:-9930154 Msa0908820:CDS
GCACCATTACTGCTGGGGTG+GGG 0.538302 6_2:+9930697 None:intergenic
TTTCCGGCCTCATATGAGAA+TGG 0.538939 6_2:-9930444 Msa0908820:CDS
CGGGCGATAAAGGTAAGGTA+AGG 0.541179 6_2:+9929765 None:intergenic
GGCACGAGATTGTCCGATGA+AGG 0.542322 6_2:-9929072 Msa0908820:CDS
CCTTCATTCTATGCCGACCC+CGG 0.542373 6_2:+9931140 None:intergenic
TCCATTCTTTCATTCATGGA+CGG 0.545247 6_2:-9929576 Msa0908820:CDS
CATCTCTCCTAAACTTCCCC+CGG 0.547799 6_2:-9930778 Msa0908820:CDS
GTTTCTGCCTCATACAGCTC+GGG 0.549518 6_2:+9930748 None:intergenic
GAGGAAACCTCTTCCCGTCC+CGG 0.552826 6_2:+9929820 None:intergenic
AACTGTAACGGATTCACCCT+AGG 0.553495 6_2:+9929011 None:intergenic
TTGCTGTCCATCTGTGTGAG+AGG 0.557091 6_2:+9929148 None:intergenic
TGGGTGTAAGCCTCGCTGCT+CGG 0.557420 6_2:-9931419 Msa0908820:CDS
TGCTGGTTGCCGAGGACAAG+AGG 0.565924 6_2:-9929042 Msa0908820:CDS
CGGGGTCGGCATAGAATGAA+GGG 0.567642 6_2:-9931139 Msa0908820:CDS
TTTATGTTGGCTTCGTCGGG+AGG 0.568263 6_2:-9930186 Msa0908820:CDS
GCAGAAACTCGCCCCACGTA+CGG 0.568645 6_2:-9930733 Msa0908820:CDS
TTTCCATTCTCATATGAGGC+CGG 0.569642 6_2:+9930441 None:intergenic
GGGTGAATCCGTTACAGTTG+CGG 0.572733 6_2:-9929007 Msa0908820:CDS
AGGCGATCGTTCGTTAGGGA+CGG 0.574187 6_2:+9930516 None:intergenic
TAAGCCGCACCATTACTGCT+GGG 0.575414 6_2:+9930691 None:intergenic
CCCACAAATGGAATGAGAAG+TGG 0.576883 6_2:+9930557 None:intergenic
ACTGTAACGGATTCACCCTA+GGG 0.580403 6_2:+9929012 None:intergenic
GAGAAACTTGCTGGTTGCCG+AGG 0.584163 6_2:-9929050 Msa0908820:CDS
AAGAATGCCTCTCACACAGA+TGG 0.589254 6_2:-9929155 Msa0908820:CDS
GGACAATCTCGTGCCTGAGG+AGG 0.591046 6_2:+9929080 None:intergenic
AACAACGAGCACGACTGAAG+TGG 0.592537 6_2:-9930328 Msa0908820:CDS
TCGCCCCACGTACGGTTCGG+AGG 0.595092 6_2:-9930725 Msa0908820:CDS
ATCGGACAATCTCGTGCCTG+AGG 0.595328 6_2:+9929077 None:intergenic
TCCACTAACAGATCAGCGAT+TGG 0.597249 6_2:+9929615 None:intergenic
TCCAAAAGGATAAGTTGCGT+TGG 0.598164 6_2:-9930140 Msa0908820:CDS
CCAACTTCTTGGGTTGCGGG+CGG 0.601762 6_2:-9931089 Msa0908820:CDS
TTCCGAACTCCATATGGGGA+AGG 0.601852 6_2:-9930619 Msa0908820:CDS
CCACAAATGGAATGAGAAGT+GGG 0.607621 6_2:+9930558 None:intergenic
TTGGATGAACTAATGCGAAT+GGG 0.608426 6_2:-9931438 None:intergenic
GGGTTGCGGGCGGAGAAGAG+CGG 0.611745 6_2:-9931079 Msa0908820:CDS
GGGCGATAAAGGTAAGGTAA+GGG 0.613080 6_2:+9929766 None:intergenic
TTTGGATGAACTAATGCGAA+TGG 0.616157 6_2:-9931439 None:intergenic
GGTAATGCCAGTTGGCGAAG+TGG 0.617022 6_2:-9931355 Msa0908820:CDS
AAAGTTTATTGGCAACAGGT+CGG 0.617299 6_2:+9930464 None:intergenic
GGATGGCCCTAATGTTGTGT+TGG 0.624287 6_2:-9931117 Msa0908820:CDS
CCACCCCAGCAGTAATGGTG+CGG 0.624478 6_2:-9930695 Msa0908820:CDS
AAAGCGCAGGTAATGCCAGT+TGG 0.627476 6_2:-9931363 Msa0908820:CDS
CGGCCTCCGAACCGTACGTG+GGG 0.627484 6_2:+9930722 None:intergenic
GCAAAGAAGGCCTTCTAAGG+CGG 0.631599 6_2:-9929129 Msa0908820:CDS
CGCTTTCGTCTCTCTCAGTG+TGG 0.633261 6_2:+9931380 None:intergenic
ATTCATCATGCTCAAACATG+AGG 0.643382 6_2:+9930496 None:intergenic
GCTGGTTGCCGAGGACAAGA+GGG 0.644222 6_2:-9929041 Msa0908820:CDS
TGGGTTCCGAACTCCATATG+GGG 0.648864 6_2:-9930623 Msa0908820:CDS
ACAAGAGGGAAGAACCCCTA+GGG 0.649278 6_2:-9929027 Msa0908820:CDS
GACAAGAGGGAAGAACCCCT+AGG 0.649952 6_2:-9929028 Msa0908820:CDS
TCGGCATAGAATGAAGGGGA+TGG 0.655914 6_2:-9931134 Msa0908820:CDS
AAGCCGCACCATTACTGCTG+GGG 0.656288 6_2:+9930692 None:intergenic
ACTGAGAGAGACGAAAGCGC+AGG 0.664834 6_2:-9931376 Msa0908820:CDS
ACTGGAAGTTCCAGAACAGG+CGG 0.667091 6_2:-9930261 Msa0908820:CDS
CTGGGTGTTTCCGAGCAGCG+AGG 0.675742 6_2:+9931409 None:intergenic
GGGGTCGGCATAGAATGAAG+GGG 0.682209 6_2:-9931138 Msa0908820:CDS
GGGACAGAACCAATGCTGTG+TGG 0.684133 6_2:+9929786 None:intergenic
ATATGGAGTTCGGAACCCAA+AGG 0.687361 6_2:+9930627 None:intergenic
GGGGAAGTTTAGGAGAGATG+GGG 0.694692 6_2:+9930781 None:intergenic
CTGTAACGGATTCACCCTAG+GGG 0.770874 6_2:+9929013 None:intergenic
CTGTGTGGAAAGATGCAACG+AGG 0.793122 6_2:+9929801 None:intergenic
GTGGCGTTAAGCATCCCTAG+CGG 0.814346 6_2:-9931336 Msa0908820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTAACAATAATAAAT+CGG - chr6_2:9931226-9931245 Msa0908820:intron 10.0%
!!! TATAGTATATAAATGGATTT+TGG - chr6_2:9929555-9929574 Msa0908820:intron 15.0%
!!! ATAGTATATAAATGGATTTT+GGG - chr6_2:9929556-9929575 Msa0908820:intron 15.0%
!! ATAGCGAAAATAATAATTTA+TGG - chr6_2:9930029-9930048 Msa0908820:intron 15.0%
!!! TGCCTTTTATTTTTTTTATT+CGG - chr6_2:9930200-9930219 Msa0908820:CDS 15.0%
!! ATCCGAATAAAAAAAATAAA+AGG + chr6_2:9930205-9930224 None:intergenic 15.0%
!!! TTTATTTTTTTTATTCGGAT+AGG - chr6_2:9930205-9930224 Msa0908820:CDS 15.0%
!! AATTGCATTAAAAAAATCAA+AGG - chr6_2:9930324-9930343 Msa0908820:CDS 15.0%
!! GAAATTAACAATAATAAATC+GGG - chr6_2:9931227-9931246 Msa0908820:intron 15.0%
!!! TATTTCATCCCATTTTTTTT+CGG + chr6_2:9929512-9929531 None:intergenic 20.0%
!!! TAGTATATAAATGGATTTTG+GGG - chr6_2:9929557-9929576 Msa0908820:intron 20.0%
!! TATACATACAAATCCATTTA+CGG - chr6_2:9930111-9930130 Msa0908820:intron 20.0%
!! AATAAAAGGCAGTTTAATTA+TGG + chr6_2:9930191-9930210 None:intergenic 20.0%
!!! AAATGCACATTTATTTTTAC+GGG + chr6_2:9931156-9931175 None:intergenic 20.0%
!!! CAAATGCACATTTATTTTTA+CGG + chr6_2:9931157-9931176 None:intergenic 20.0%
!!! ATTTCATCCCATTTTTTTTC+GGG + chr6_2:9929511-9929530 None:intergenic 25.0%
!!! AGTATATAAATGGATTTTGG+GGG - chr6_2:9929558-9929577 Msa0908820:intron 25.0%
!!! CTCTAAAGTATCTTTTTTCT+GGG + chr6_2:9930066-9930085 None:intergenic 25.0%
!!! TCTCTAAAGTATCTTTTTTC+TGG + chr6_2:9930067-9930086 None:intergenic 25.0%
! TAATGCAATTAAGAATTCCA+CGG + chr6_2:9930314-9930333 None:intergenic 25.0%
! TAAGATTGCTTAATGAGTTA+TGG + chr6_2:9930495-9930514 None:intergenic 25.0%
CTAGCGCTATAGTATATAAA+TGG - chr6_2:9929548-9929567 Msa0908820:intron 30.0%
!! GTATATAAATGGATTTTGGG+GGG - chr6_2:9929559-9929578 Msa0908820:intron 30.0%
!! TATATAAATGGATTTTGGGG+GGG - chr6_2:9929560-9929579 Msa0908820:intron 30.0%
AAAAGGCAGTTTAATTATGG+TGG + chr6_2:9930188-9930207 None:intergenic 30.0%
TATTCGGATAGGATTTATGT+TGG - chr6_2:9930216-9930235 Msa0908820:CDS 30.0%
GCAAAAATACGATAGATAAG+GGG + chr6_2:9930701-9930720 None:intergenic 30.0%
GGCAAAAATACGATAGATAA+GGG + chr6_2:9930702-9930721 None:intergenic 30.0%
CAATAAACTAATGGAAGATG+AGG + chr6_2:9931020-9931039 None:intergenic 30.0%
CGATGTTGACAATAAACTAA+TGG + chr6_2:9931029-9931048 None:intergenic 30.0%
TAGTTGTTAAGTCTTTCCTT+CGG - chr6_2:9931073-9931092 Msa0908820:intron 30.0%
TAAGAGAGCCATTCCATTTA+GGG - chr6_2:9929391-9929410 Msa0908820:intron 35.0%
!!! ATCCCATTTTTTTTCGGGAT+AGG + chr6_2:9929506-9929525 None:intergenic 35.0%
GATCATCAAATTCCCACAAA+TGG + chr6_2:9929873-9929892 None:intergenic 35.0%
ATTCATCATGCTCAAACATG+AGG + chr6_2:9929922-9929941 None:intergenic 35.0%
AAAGTTTATTGGCAACAGGT+CGG + chr6_2:9929954-9929973 None:intergenic 35.0%
! CAGTTTTCCATTCTCATATG+AGG + chr6_2:9929981-9930000 None:intergenic 35.0%
CTCATATGAGAATGGAAAAC+TGG - chr6_2:9929979-9929998 Msa0908820:intron 35.0%
! AACTGGAGAATTTTCTGCAT+CGG - chr6_2:9929996-9930015 Msa0908820:intron 35.0%
!!! GTATCTTTTTTCTGGGAACA+TGG + chr6_2:9930059-9930078 None:intergenic 35.0%
GAAGCATATCTATCCGTAAA+TGG + chr6_2:9930127-9930146 None:intergenic 35.0%
TCAATCAATAGAGGCTAGAT+CGG - chr6_2:9930361-9930380 Msa0908820:intron 35.0%
CTCATGTCAGTATTATCACA+GGG + chr6_2:9930446-9930465 None:intergenic 35.0%
ACTCATGTCAGTATTATCAC+AGG + chr6_2:9930447-9930466 None:intergenic 35.0%
TGATAATACTGACATGAGTC+AGG - chr6_2:9930448-9930467 Msa0908820:CDS 35.0%
GGGCAAAAATACGATAGATA+AGG + chr6_2:9930703-9930722 None:intergenic 35.0%
GCAATCCATTCTTTCATTCA+TGG - chr6_2:9930835-9930854 Msa0908820:intron 35.0%
TCCATTCTTTCATTCATGGA+CGG - chr6_2:9930839-9930858 Msa0908820:intron 35.0%
GTTTATTGTCAACATCGTAG+AGG - chr6_2:9931032-9931051 Msa0908820:intron 35.0%
AGTTGTTAAGTCTTTCCTTC+GGG - chr6_2:9931074-9931093 Msa0908820:intron 35.0%
TGTTGTGCACTAAGAACTTT+AGG + chr6_2:9931199-9931218 None:intergenic 35.0%
GCTTTGCCAACACAACATTA+GGG + chr6_2:9929307-9929326 None:intergenic 40.0%
CTAAGAGAGCCATTCCATTT+AGG - chr6_2:9929390-9929409 Msa0908820:intron 40.0%
!!! CCATTTTTTTTCGGGATAGG+CGG + chr6_2:9929503-9929522 None:intergenic 40.0%
CGCCTATCCCGAAAAAAAAT+GGG - chr6_2:9929501-9929520 Msa0908820:intron 40.0%
TTCACTCAACGATTGCCTTT+GGG - chr6_2:9929773-9929792 Msa0908820:CDS 40.0%
CATGTAAATGATCGAGACCT+CGG + chr6_2:9929835-9929854 None:intergenic 40.0%
CCACAAATGGAATGAGAAGT+GGG + chr6_2:9929860-9929879 None:intergenic 40.0%
CCACTTCTCATTCCATTTGT+GGG - chr6_2:9929858-9929877 Msa0908820:intron 40.0%
CCTGTTGCCAATAAACTTTC+CGG - chr6_2:9929955-9929974 Msa0908820:intron 40.0%
TATGAGGCCGGAAAGTTTAT+TGG + chr6_2:9929965-9929984 None:intergenic 40.0%
TTTCCATTCTCATATGAGGC+CGG + chr6_2:9929977-9929996 None:intergenic 40.0%
ACGGATAGATATGCTTCGAT+TGG - chr6_2:9930130-9930149 Msa0908820:CDS 40.0%
AGATATGCTTCGATTGGAAC+TGG - chr6_2:9930136-9930155 Msa0908820:CDS 40.0%
!! AGGATTTATGTTGGCTTCGT+CGG - chr6_2:9930225-9930244 Msa0908820:CDS 40.0%
TTTGTTACGTCAGCTCCAAA+AGG - chr6_2:9930261-9930280 Msa0908820:CDS 40.0%
TCCAAAAGGATAAGTTGCGT+TGG - chr6_2:9930275-9930294 Msa0908820:CDS 40.0%
! TCCAACGCAACTTATCCTTT+TGG + chr6_2:9930279-9930298 None:intergenic 40.0%
TCAACCCTCTCAATCAATAG+AGG - chr6_2:9930352-9930371 Msa0908820:intron 40.0%
! CTAGCCTCTATTGATTGAGA+GGG + chr6_2:9930359-9930378 None:intergenic 40.0%
! TCTAGCCTCTATTGATTGAG+AGG + chr6_2:9930360-9930379 None:intergenic 40.0%
GGATAAATCCGAATGACTAG+TGG - chr6_2:9930469-9930488 Msa0908820:CDS 40.0%
AGTTATGGCCACTAGTCATT+CGG + chr6_2:9930480-9930499 None:intergenic 40.0%
ACCGTCCATGAATGAAAGAA+TGG + chr6_2:9930843-9930862 None:intergenic 40.0%
! CCTCTTTGGAGATGAAAAGA+AGG + chr6_2:9930880-9930899 None:intergenic 40.0%
! CCTTCTTTTCATCTCCAAAG+AGG - chr6_2:9930877-9930896 Msa0908820:intron 40.0%
TATTGTCAACATCGTAGAGG+TGG - chr6_2:9931035-9931054 Msa0908820:intron 40.0%
AGATCAGACAAATAACCCGA+AGG + chr6_2:9931092-9931111 None:intergenic 40.0%
AAGTTCTTAGTGCACAACAG+AGG - chr6_2:9931200-9931219 Msa0908820:intron 40.0%
AGTTCTTAGTGCACAACAGA+GGG - chr6_2:9931201-9931220 Msa0908820:intron 40.0%
! TCAAAGACTTGGTTGGATGC+GGG + chr6_2:9929165-9929184 None:intergenic 45.0%
! GTCAAAGACTTGGTTGGATG+CGG + chr6_2:9929166-9929185 None:intergenic 45.0%
ATCCAACCAAGTCTTTGACC+AGG - chr6_2:9929167-9929186 Msa0908820:CDS 45.0%
TCCAACCAAGTCTTTGACCA+GGG - chr6_2:9929168-9929187 Msa0908820:CDS 45.0%
GGCTTTGCCAACACAACATT+AGG + chr6_2:9929308-9929327 None:intergenic 45.0%
TGTTGGCAAAGCCAACTTCT+TGG - chr6_2:9929315-9929334 Msa0908820:intron 45.0%
GTTGGCAAAGCCAACTTCTT+GGG - chr6_2:9929316-9929335 Msa0908820:intron 45.0%
! AAAGCCAACTTCTTGGGTTG+CGG - chr6_2:9929322-9929341 Msa0908820:intron 45.0%
! CATTTAGGGCGAGACAGAAT+GGG - chr6_2:9929405-9929424 Msa0908820:intron 45.0%
CCGCCTATCCCGAAAAAAAA+TGG - chr6_2:9929500-9929519 Msa0908820:intron 45.0%
AGTTTCTGCCTCATACAGCT+CGG + chr6_2:9929671-9929690 None:intergenic 45.0%
GTTCACTCAACGATTGCCTT+TGG - chr6_2:9929772-9929791 Msa0908820:CDS 45.0%
ATATGGAGTTCGGAACCCAA+AGG + chr6_2:9929791-9929810 None:intergenic 45.0%
! TTTGGGTTCCGAACTCCATA+TGG - chr6_2:9929790-9929809 Msa0908820:CDS 45.0%
TTGGGTTCCGAACTCCATAT+GGG - chr6_2:9929791-9929810 Msa0908820:CDS 45.0%
CGAGGTCTCGATCATTTACA+TGG - chr6_2:9929833-9929852 Msa0908820:CDS 45.0%
CCCACTTCTCATTCCATTTG+TGG - chr6_2:9929857-9929876 Msa0908820:CDS 45.0%
CCCACAAATGGAATGAGAAG+TGG + chr6_2:9929861-9929880 None:intergenic 45.0%
CCGGAAAGTTTATTGGCAAC+AGG + chr6_2:9929958-9929977 None:intergenic 45.0%
TTTCCGGCCTCATATGAGAA+TGG - chr6_2:9929971-9929990 Msa0908820:intron 45.0%
! TGGAGAATTTTCTGCATCGG+TGG - chr6_2:9929999-9930018 Msa0908820:intron 45.0%
!! GGATTTATGTTGGCTTCGTC+GGG - chr6_2:9930226-9930245 Msa0908820:CDS 45.0%
TTGGAATCGAGAAAGTTCCG+TGG - chr6_2:9930294-9930313 Msa0908820:CDS 45.0%
ATAGAGGCTAGATCGGACTA+AGG - chr6_2:9930368-9930387 Msa0908820:intron 45.0%
GAGGAAAGGCTAAGCGAAAA+AGG + chr6_2:9930519-9930538 None:intergenic 45.0%
CGTAACGGTAGAAAGAGGAA+AGG + chr6_2:9930533-9930552 None:intergenic 45.0%
CATCTCGTAACGGTAGAAAG+AGG + chr6_2:9930538-9930557 None:intergenic 45.0%
GAGGATACTGCATCTCGTAA+CGG + chr6_2:9930548-9930567 None:intergenic 45.0%
CTCTAACGTCTTTGCTTGCA+CGG - chr6_2:9930565-9930584 Msa0908820:CDS 45.0%
TGCATCTTTCCACACAGCAT+TGG - chr6_2:9930620-9930639 Msa0908820:CDS 45.0%
GGGCGATAAAGGTAAGGTAA+GGG + chr6_2:9930652-9930671 None:intergenic 45.0%
!! TTGCTCTGGGCTTTTTGTTG+GGG + chr6_2:9930723-9930742 None:intergenic 45.0%
!! CTTGCTCTGGGCTTTTTGTT+GGG + chr6_2:9930724-9930743 None:intergenic 45.0%
CAACAAAAAGCCCAGAGCAA+GGG - chr6_2:9930723-9930742 Msa0908820:CDS 45.0%
AACAAAAAGCCCAGAGCAAG+GGG - chr6_2:9930724-9930743 Msa0908820:CDS 45.0%
!!! GATTGGCATTGGTTTTGGTG+GGG + chr6_2:9930786-9930805 None:intergenic 45.0%
!!! CGATTGGCATTGGTTTTGGT+GGG + chr6_2:9930787-9930806 None:intergenic 45.0%
!!! TCAGCGATTGGCATTGGTTT+TGG + chr6_2:9930791-9930810 None:intergenic 45.0%
AACAGATCAGCGATTGGCAT+TGG + chr6_2:9930797-9930816 None:intergenic 45.0%
TCCACTAACAGATCAGCGAT+TGG + chr6_2:9930803-9930822 None:intergenic 45.0%
! TGTTAGTGGACAGAGCTTCT+GGG - chr6_2:9930813-9930832 Msa0908820:CDS 45.0%
TCATTCATGGACGGTCACTT+AGG - chr6_2:9930848-9930867 Msa0908820:intron 45.0%
CATTCATGGACGGTCACTTA+GGG - chr6_2:9930849-9930868 Msa0908820:intron 45.0%
TTTCATCTCCAAAGAGGACG+AGG - chr6_2:9930883-9930902 Msa0908820:intron 45.0%
!! TGTTTTTGCCTCGTCCTCTT+TGG + chr6_2:9930894-9930913 None:intergenic 45.0%
AAAAACAGCGTTCCGTTGTC+CGG - chr6_2:9930907-9930926 Msa0908820:intron 45.0%
ATAGCGTTCTTCAGACCGAA+GGG + chr6_2:9930973-9930992 None:intergenic 45.0%
TATAGCGTTCTTCAGACCGA+AGG + chr6_2:9930974-9930993 None:intergenic 45.0%
TGTGCATTTGACGTAACAGC+AGG - chr6_2:9931167-9931186 Msa0908820:CDS 45.0%
GTTCTTAGTGCACAACAGAG+GGG - chr6_2:9931202-9931221 Msa0908820:intron 45.0%
!! GAGAGGCATTCTTCAACTTC+TGG + chr6_2:9931253-9931272 None:intergenic 45.0%
AAGAATGCCTCTCACACAGA+TGG - chr6_2:9931260-9931279 Msa0908820:intron 45.0%
ACACAGATGGACAGCAAAGA+AGG - chr6_2:9931273-9931292 Msa0908820:intron 45.0%
ACAGCAAAGAAGGCCTTCTA+AGG - chr6_2:9931283-9931302 Msa0908820:intron 45.0%
CATTTGTAAGAGTCCTCCTC+AGG - chr6_2:9931322-9931341 Msa0908820:intron 45.0%
CCAGCAAGTTTCTCCTTCAT+CGG + chr6_2:9931359-9931378 None:intergenic 45.0%
!! ACTGTAACGGATTCACCCTA+GGG + chr6_2:9931406-9931425 None:intergenic 45.0%
!! AACTGTAACGGATTCACCCT+AGG + chr6_2:9931407-9931426 None:intergenic 45.0%
ATCGCATTCCGCAACTGTAA+CGG + chr6_2:9931419-9931438 None:intergenic 45.0%
AAAGCGCAGGTAATGCCAGT+TGG - chr6_2:9929052-9929071 Msa0908820:CDS 50.0%
! CCTCTCTTTTCGTACCGCTA+GGG + chr6_2:9929096-9929115 None:intergenic 50.0%
! ACCTCTCTTTTCGTACCGCT+AGG + chr6_2:9929097-9929116 None:intergenic 50.0%
! TCCCTGGTCAAAGACTTGGT+TGG + chr6_2:9929172-9929191 None:intergenic 50.0%
CCAAGTCTTTGACCAGGGAA+CGG - chr6_2:9929173-9929192 Msa0908820:CDS 50.0%
CAAGTCTTTGACCAGGGAAC+GGG - chr6_2:9929174-9929193 Msa0908820:CDS 50.0%
TAATTCCCACTACCGCTGGA+AGG - chr6_2:9929198-9929217 Msa0908820:CDS 50.0%
TCGGCATAGAATGAAGGGGA+TGG - chr6_2:9929281-9929300 Msa0908820:intron 50.0%
GGATGGCCCTAATGTTGTGT+TGG - chr6_2:9929298-9929317 Msa0908820:intron 50.0%
! AAGCCAACTTCTTGGGTTGC+GGG - chr6_2:9929323-9929342 Msa0908820:intron 50.0%
CTGTCTCGCCCTAAATGGAA+TGG + chr6_2:9929402-9929421 None:intergenic 50.0%
CCATTCTGTCTCGCCCTAAA+TGG + chr6_2:9929407-9929426 None:intergenic 50.0%
! CCATTTAGGGCGAGACAGAA+TGG - chr6_2:9929404-9929423 Msa0908820:intron 50.0%
GTAGTCGTCGTCTGACCAAT+TGG + chr6_2:9929457-9929476 None:intergenic 50.0%
GGGGAAGTTTAGGAGAGATG+GGG + chr6_2:9929637-9929656 None:intergenic 50.0%
GGGGGAAGTTTAGGAGAGAT+GGG + chr6_2:9929638-9929657 None:intergenic 50.0%
CATCTCTCCTAAACTTCCCC+CGG - chr6_2:9929637-9929656 Msa0908820:CDS 50.0%
GTTTCTGCCTCATACAGCTC+GGG + chr6_2:9929670-9929689 None:intergenic 50.0%
TAAGCCGCACCATTACTGCT+GGG + chr6_2:9929727-9929746 None:intergenic 50.0%
TGGGTTCCGAACTCCATATG+GGG - chr6_2:9929792-9929811 Msa0908820:CDS 50.0%
TTCCGAACTCCATATGGGGA+AGG - chr6_2:9929796-9929815 Msa0908820:CDS 50.0%
CTCCTTCCCCATATGGAGTT+CGG + chr6_2:9929801-9929820 None:intergenic 50.0%
AACAACGCTCCTTCCCCATA+TGG + chr6_2:9929808-9929827 None:intergenic 50.0%
!! AAGGAGCGTTGTTGTTTCCG+AGG - chr6_2:9929815-9929834 Msa0908820:CDS 50.0%
CATGAGGCGATCGTTCGTTA+GGG + chr6_2:9929906-9929925 None:intergenic 50.0%
ACATGAGGCGATCGTTCGTT+AGG + chr6_2:9929907-9929926 None:intergenic 50.0%
AACAACGAGCACGACTGAAG+TGG - chr6_2:9930087-9930106 Msa0908820:intron 50.0%
GGAACTGGAAGTTCCAGAAC+AGG - chr6_2:9930151-9930170 Msa0908820:CDS 50.0%
ACTGGAAGTTCCAGAACAGG+CGG - chr6_2:9930154-9930173 Msa0908820:CDS 50.0%
!! TTTATGTTGGCTTCGTCGGG+AGG - chr6_2:9930229-9930248 Msa0908820:CDS 50.0%
GATCGGACTAAGGAGAGAGA+CGG - chr6_2:9930378-9930397 Msa0908820:CDS 50.0%
AGGAGAGAGACGGTTGAGTA+CGG - chr6_2:9930388-9930407 Msa0908820:CDS 50.0%
GTTGAGTACGGAAGCGAAAG+CGG - chr6_2:9930400-9930419 Msa0908820:CDS 50.0%
GGAAGCGAAAGCGGAGATAT+AGG - chr6_2:9930409-9930428 Msa0908820:CDS 50.0%
CGTGCAAGCAAAGACGTTAG+AGG + chr6_2:9930567-9930586 None:intergenic 50.0%
CTGTGTGGAAAGATGCAACG+AGG + chr6_2:9930617-9930636 None:intergenic 50.0%
CGGGCGATAAAGGTAAGGTA+AGG + chr6_2:9930653-9930672 None:intergenic 50.0%
ACCTTACCTTTATCGCCCGT+CGG - chr6_2:9930654-9930673 Msa0908820:CDS 50.0%
!! CCTTGCTCTGGGCTTTTTGT+TGG + chr6_2:9930725-9930744 None:intergenic 50.0%
CCAACAAAAAGCCCAGAGCA+AGG - chr6_2:9930722-9930741 Msa0908820:CDS 50.0%
ACAAAAAGCCCAGAGCAAGG+GGG - chr6_2:9930725-9930744 Msa0908820:CDS 50.0%
GGGGGGAAAGAATGCAATTC+CGG - chr6_2:9930752-9930771 Msa0908820:CDS 50.0%
! TTTTGGTGGGGCTGAGATTC+CGG + chr6_2:9930774-9930793 None:intergenic 50.0%
!!! GCGATTGGCATTGGTTTTGG+TGG + chr6_2:9930788-9930807 None:intergenic 50.0%
GCCAATCGCTGATCTGTTAG+TGG - chr6_2:9930799-9930818 Msa0908820:CDS 50.0%
! CTGTTAGTGGACAGAGCTTC+TGG - chr6_2:9930812-9930831 Msa0908820:CDS 50.0%
AAAACAGCGTTCCGTTGTCC+GGG - chr6_2:9930908-9930927 Msa0908820:intron 50.0%
AGATGAGGTTCATTGCTCGC+TGG + chr6_2:9931005-9931024 None:intergenic 50.0%
AGTGTTTGAGCGCGAGAACA+CGG - chr6_2:9931118-9931137 Msa0908820:CDS 50.0%
TTGCTGTCCATCTGTGTGAG+AGG + chr6_2:9931270-9931289 None:intergenic 50.0%
! GCAAAGAAGGCCTTCTAAGG+CGG - chr6_2:9931286-9931305 Msa0908820:intron 50.0%
CCGATGAAGGAGAAACTTGC+TGG - chr6_2:9931356-9931375 Msa0908820:CDS 50.0%
ACAAGAGGGAAGAACCCCTA+GGG - chr6_2:9931388-9931407 Msa0908820:CDS 50.0%
!! CTGTAACGGATTCACCCTAG+GGG + chr6_2:9931405-9931424 None:intergenic 50.0%
GGGTGAATCCGTTACAGTTG+CGG - chr6_2:9931408-9931427 Msa0908820:CDS 50.0%
CTCTCAGTGTGGTCAGCACT+GGG + chr6_2:9929027-9929046 None:intergenic 55.0%
TCTCTCAGTGTGGTCAGCAC+TGG + chr6_2:9929028-9929047 None:intergenic 55.0%
CGCTTTCGTCTCTCTCAGTG+TGG + chr6_2:9929038-9929057 None:intergenic 55.0%
! ACTGAGAGAGACGAAAGCGC+AGG - chr6_2:9929039-9929058 Msa0908820:CDS 55.0%
GGTAATGCCAGTTGGCGAAG+TGG - chr6_2:9929060-9929079 Msa0908820:CDS 55.0%
CTTAACGCCACTTCGCCAAC+TGG + chr6_2:9929070-9929089 None:intergenic 55.0%
GTGGCGTTAAGCATCCCTAG+CGG - chr6_2:9929079-9929098 Msa0908820:CDS 55.0%
CCCTAGCGGTACGAAAAGAG+AGG - chr6_2:9929093-9929112 Msa0908820:CDS 55.0%
CCGTTCCCTGGTCAAAGACT+TGG + chr6_2:9929176-9929195 None:intergenic 55.0%
GTGGGAATTATCCCGTTCCC+TGG + chr6_2:9929188-9929207 None:intergenic 55.0%
GGGATAATTCCCACTACCGC+TGG - chr6_2:9929194-9929213 Msa0908820:CDS 55.0%
CCTTCATTCTATGCCGACCC+CGG + chr6_2:9929278-9929297 None:intergenic 55.0%
CGGGGTCGGCATAGAATGAA+GGG - chr6_2:9929276-9929295 Msa0908820:intron 55.0%
GGGGTCGGCATAGAATGAAG+GGG - chr6_2:9929277-9929296 Msa0908820:intron 55.0%
TTAGGGCGAGACAGAATGGG+CGG - chr6_2:9929408-9929427 Msa0908820:intron 55.0%
CGTCGTCTGACCAATTGGCT+CGG + chr6_2:9929452-9929471 None:intergenic 55.0%
CGGGGGAAGTTTAGGAGAGA+TGG + chr6_2:9929639-9929658 None:intergenic 55.0%
CCTAAACTTCCCCCGGTCTT+CGG - chr6_2:9929644-9929663 Msa0908820:CDS 55.0%
AAGCCGCACCATTACTGCTG+GGG + chr6_2:9929726-9929745 None:intergenic 55.0%
CTAAGCCGCACCATTACTGC+TGG + chr6_2:9929728-9929747 None:intergenic 55.0%
CAGCAGTAATGGTGCGGCTT+AGG - chr6_2:9929726-9929745 Msa0908820:CDS 55.0%
AGGCGATCGTTCGTTAGGGA+CGG + chr6_2:9929902-9929921 None:intergenic 55.0%
TTGCTTGCACGGCTTTCGAC+CGG - chr6_2:9930576-9930595 Msa0908820:CDS 55.0%
GGGACAGAACCAATGCTGTG+TGG + chr6_2:9930632-9930651 None:intergenic 55.0%
CCTTACCTTTATCGCCCGTC+GGG - chr6_2:9930655-9930674 Msa0908820:CDS 55.0%
CAAAAAGCCCAGAGCAAGGG+GGG - chr6_2:9930726-9930745 Msa0908820:CDS 55.0%
GAGGTTCATTGCTCGCTGGT+AGG + chr6_2:9931001-9931020 None:intergenic 55.0%
ATCGGACAATCTCGTGCCTG+AGG + chr6_2:9931341-9931360 None:intergenic 55.0%
GGCACGAGATTGTCCGATGA+AGG - chr6_2:9931343-9931362 Msa0908820:CDS 55.0%
!! GAGAAACTTGCTGGTTGCCG+AGG - chr6_2:9931365-9931384 Msa0908820:CDS 55.0%
GGGTTCTTCCCTCTTGTCCT+CGG + chr6_2:9931385-9931404 None:intergenic 55.0%
GACAAGAGGGAAGAACCCCT+AGG - chr6_2:9931387-9931406 Msa0908820:CDS 55.0%
TGGGTGTAAGCCTCGCTGCT+CGG - chr6_2:9928996-9929015 Msa0908820:CDS 60.0%
GCTTCCCAAAAAGCCAGCCC+CGG - chr6_2:9929251-9929270 Msa0908820:intron 60.0%
CTTCCCAAAAAGCCAGCCCC+GGG - chr6_2:9929252-9929271 Msa0908820:intron 60.0%
CCGGGGTCGGCATAGAATGA+AGG - chr6_2:9929275-9929294 Msa0908820:intron 60.0%
! CCAACTTCTTGGGTTGCGGG+CGG - chr6_2:9929326-9929345 Msa0908820:intron 60.0%
CTCTTAGTTACGCTGCGCCC+CGG + chr6_2:9929377-9929396 None:intergenic 60.0%
TAGGGCGAGACAGAATGGGC+GGG - chr6_2:9929409-9929428 Msa0908820:intron 60.0%
GGTCTGGTGTCCGAGCCAAT+TGG - chr6_2:9929439-9929458 Msa0908820:intron 60.0%
CCGAAGACCGGGGGAAGTTT+AGG + chr6_2:9929647-9929666 None:intergenic 60.0%
ATACAGCTCGGGCCGAAGAC+CGG + chr6_2:9929659-9929678 None:intergenic 60.0%
TCTTCGGCCCGAGCTGTATG+AGG - chr6_2:9929660-9929679 Msa0908820:CDS 60.0%
GCAGAAACTCGCCCCACGTA+CGG - chr6_2:9929682-9929701 Msa0908820:CDS 60.0%
AACTCGCCCCACGTACGGTT+CGG - chr6_2:9929687-9929706 Msa0908820:CDS 60.0%
ATTACTGCTGGGGTGGGGCT+CGG + chr6_2:9929716-9929735 None:intergenic 60.0%
GCACCATTACTGCTGGGGTG+GGG + chr6_2:9929721-9929740 None:intergenic 60.0%
CGCACCATTACTGCTGGGGT+GGG + chr6_2:9929722-9929741 None:intergenic 60.0%
CCACCCCAGCAGTAATGGTG+CGG - chr6_2:9929720-9929739 Msa0908820:CDS 60.0%
GAAGTTCCAGAACAGGCGGC+TGG - chr6_2:9930158-9930177 Msa0908820:CDS 60.0%
GGTATACCAGCCGCCTGTTC+TGG + chr6_2:9930167-9930186 None:intergenic 60.0%
TGCTTGCACGGCTTTCGACC+GGG - chr6_2:9930577-9930596 Msa0908820:CDS 60.0%
GAGGAAACCTCTTCCCGTCC+CGG + chr6_2:9930598-9930617 None:intergenic 60.0%
CCCGACGGGCGATAAAGGTA+AGG + chr6_2:9930658-9930677 None:intergenic 60.0%
ATGCGAACCTTGACGCCCGA+CGG + chr6_2:9930673-9930692 None:intergenic 60.0%
! TTCCGTTGTCCGGGTGCTGT+TGG - chr6_2:9930917-9930936 Msa0908820:intron 60.0%
GTCCAACAGCACCCGGACAA+CGG + chr6_2:9930922-9930941 None:intergenic 60.0%
!! GTTGTCCGGGTGCTGTTGGA+CGG - chr6_2:9930921-9930940 Msa0908820:intron 60.0%
!! GGACGGACGGACTATTCTGC+TGG - chr6_2:9930938-9930957 Msa0908820:intron 60.0%
!! GGACGGACTATTCTGCTGGC+AGG - chr6_2:9930942-9930961 Msa0908820:intron 60.0%
TGCTGGCAGGTGATGCCCTT+CGG - chr6_2:9930955-9930974 Msa0908820:intron 60.0%
!! AGGCCTTCTAAGGCGGACTC+TGG - chr6_2:9931293-9931312 Msa0908820:intron 60.0%
GAGCCAGAGTCCGCCTTAGA+AGG + chr6_2:9931299-9931318 None:intergenic 60.0%
GGACAATCTCGTGCCTGAGG+AGG + chr6_2:9931338-9931357 None:intergenic 60.0%
! TGCTGGTTGCCGAGGACAAG+AGG - chr6_2:9931373-9931392 Msa0908820:CDS 60.0%
GCTGGTTGCCGAGGACAAGA+GGG - chr6_2:9931374-9931393 Msa0908820:CDS 60.0%
CTGGGTGTTTCCGAGCAGCG+AGG + chr6_2:9929009-9929028 None:intergenic 65.0%
TACGTCCGTACCGCTCCTCG+CGG - chr6_2:9929132-9929151 Msa0908820:CDS 65.0%
CTACTCCGCGAGGAGCGGTA+CGG + chr6_2:9929140-9929159 None:intergenic 65.0%
GGGATCTACTCCGCGAGGAG+CGG + chr6_2:9929145-9929164 None:intergenic 65.0%
GATGCGGGATCTACTCCGCG+AGG + chr6_2:9929150-9929169 None:intergenic 65.0%
!! GCTGGCCTTCCAGCGGTAGT+GGG + chr6_2:9929206-9929225 None:intergenic 65.0%
ACTACCGCTGGAAGGCCAGC+CGG - chr6_2:9929206-9929225 Msa0908820:intron 65.0%
ATTCTATGCCGACCCCGGCC+CGG + chr6_2:9929273-9929292 None:intergenic 65.0%
CCGCCCGCAACCCAAGAAGT+TGG + chr6_2:9929329-9929348 None:intergenic 65.0%
ACAGAATGGGCGGGCACGAG+CGG - chr6_2:9929418-9929437 Msa0908820:intron 65.0%
AAGCTTATCCCCGCCCCGAC+CGG - chr6_2:9929597-9929616 Msa0908820:CDS 65.0%
TACAGCTCGGGCCGAAGACC+GGG + chr6_2:9929658-9929677 None:intergenic 65.0%
TCGGCCTCCGAACCGTACGT+GGG + chr6_2:9929697-9929716 None:intergenic 65.0%
GAGCCCCACCCCAGCAGTAA+TGG - chr6_2:9929715-9929734 Msa0908820:CDS 65.0%
CCGCACCATTACTGCTGGGG+TGG + chr6_2:9929723-9929742 None:intergenic 65.0%
TGCACGGCTTTCGACCGGGA+CGG - chr6_2:9930581-9930600 Msa0908820:CDS 65.0%
CTTTCGACCGGGACGGGAAG+AGG - chr6_2:9930588-9930607 Msa0908820:intron 65.0%
TGACGCCCGACGGGCGATAA+AGG + chr6_2:9930663-9930682 None:intergenic 65.0%
TTATCGCCCGTCGGGCGTCA+AGG - chr6_2:9930663-9930682 Msa0908820:CDS 65.0%
TGCGAACCTTGACGCCCGAC+GGG + chr6_2:9930672-9930691 None:intergenic 65.0%
!! TCCGGGTGCTGTTGGACGGA+CGG - chr6_2:9930925-9930944 Msa0908820:intron 65.0%
TCCGTCCGTCCAACAGCACC+CGG + chr6_2:9930929-9930948 None:intergenic 65.0%
!! GGCTGGCCTTCCAGCGGTAG+TGG + chr6_2:9929207-9929226 None:intergenic 70.0%
CTACCGCTGGAAGGCCAGCC+GGG - chr6_2:9929207-9929226 Msa0908820:intron 70.0%
!!! CGGCCCGGGGCTGGCTTTTT+GGG + chr6_2:9929258-9929277 None:intergenic 70.0%
CCAAAAAGCCAGCCCCGGGC+CGG - chr6_2:9929256-9929275 Msa0908820:intron 70.0%
CAAAAAGCCAGCCCCGGGCC+GGG - chr6_2:9929257-9929276 Msa0908820:intron 70.0%
AAAAAGCCAGCCCCGGGCCG+GGG - chr6_2:9929258-9929277 Msa0908820:intron 70.0%
TTCTATGCCGACCCCGGCCC+GGG + chr6_2:9929272-9929291 None:intergenic 70.0%
GGGTTGCGGGCGGAGAAGAG+CGG - chr6_2:9929336-9929355 Msa0908820:intron 70.0%
GGGCGGAGAAGAGCGGACGT+GGG - chr6_2:9929343-9929362 Msa0908820:intron 70.0%
GGCGGAGAAGAGCGGACGTG+GGG - chr6_2:9929344-9929363 Msa0908820:intron 70.0%
GCGGACGTGGGGACTCAGAC+CGG - chr6_2:9929355-9929374 Msa0908820:intron 70.0%
CGGACGTGGGGACTCAGACC+GGG - chr6_2:9929356-9929375 Msa0908820:intron 70.0%
GGACGTGGGGACTCAGACCG+GGG - chr6_2:9929357-9929376 Msa0908820:intron 70.0%
AGACCCAGCAGCTGCCGGTC+GGG + chr6_2:9929614-9929633 None:intergenic 70.0%
GAGACCCAGCAGCTGCCGGT+CGG + chr6_2:9929615-9929634 None:intergenic 70.0%
TGGGGAGACCCAGCAGCTGC+CGG + chr6_2:9929619-9929638 None:intergenic 70.0%
ACAGCTCGGGCCGAAGACCG+GGG + chr6_2:9929657-9929676 None:intergenic 70.0%
! TCGCCCCACGTACGGTTCGG+AGG - chr6_2:9929690-9929709 Msa0908820:CDS 70.0%
CGGCCTCCGAACCGTACGTG+GGG + chr6_2:9929696-9929715 None:intergenic 70.0%
CTCGGCCTCCGAACCGTACG+TGG + chr6_2:9929698-9929717 None:intergenic 70.0%
GCACGGCTTTCGACCGGGAC+GGG - chr6_2:9930582-9930601 Msa0908820:intron 70.0%
AAGCCCAGAGCAAGGGGGGC+TGG - chr6_2:9930730-9930749 Msa0908820:CDS 70.0%
AGCCCAGAGCAAGGGGGGCT+GGG - chr6_2:9930731-9930750 Msa0908820:CDS 70.0%
TTCCCACCGCGCTCACGGCC+CGG + chr6_2:9929228-9929247 None:intergenic 75.0%
GGCCGTGAGCGCGGTGGGAA+CGG - chr6_2:9929228-9929247 Msa0908820:intron 75.0%
GCCGTGAGCGCGGTGGGAAC+GGG - chr6_2:9929229-9929248 Msa0908820:intron 75.0%
GCCCGTTCCCACCGCGCTCA+CGG + chr6_2:9929233-9929252 None:intergenic 75.0%
!!! CCGGCCCGGGGCTGGCTTTT+TGG + chr6_2:9929259-9929278 None:intergenic 75.0%
TCTATGCCGACCCCGGCCCG+GGG + chr6_2:9929271-9929290 None:intergenic 75.0%
CGGGCGGAGAAGAGCGGACG+TGG - chr6_2:9929342-9929361 Msa0908820:intron 75.0%
ATGGGCGGGCACGAGCGGTC+TGG - chr6_2:9929423-9929442 Msa0908820:intron 75.0%
GACCCAGCAGCTGCCGGTCG+GGG + chr6_2:9929613-9929632 None:intergenic 75.0%
CAGCTCGGGCCGAAGACCGG+GGG + chr6_2:9929656-9929675 None:intergenic 75.0%
GCCCAGAGCAAGGGGGGCTG+GGG - chr6_2:9930732-9930751 Msa0908820:CDS 75.0%
CCCCCAGCCCCCCTTGCTCT+GGG + chr6_2:9930736-9930755 None:intergenic 75.0%
CCCAGAGCAAGGGGGGCTGG+GGG - chr6_2:9930733-9930752 Msa0908820:CDS 75.0%
CCAGAGCAAGGGGGGCTGGG+GGG - chr6_2:9930734-9930753 Msa0908820:CDS 75.0%
CAGAGCAAGGGGGGCTGGGG+GGG - chr6_2:9930735-9930754 Msa0908820:CDS 75.0%
!!! CGGCCCGGCTGGCCTTCCAG+CGG + chr6_2:9929213-9929232 None:intergenic 80.0%
! AGCCGGGCCGTGAGCGCGGT+GGG - chr6_2:9929223-9929242 Msa0908820:intron 80.0%
! AGCAGCTGCCGGTCGGGGCG+GGG + chr6_2:9929608-9929627 None:intergenic 80.0%
! CAGCAGCTGCCGGTCGGGGC+GGG + chr6_2:9929609-9929628 None:intergenic 80.0%
! CCAGCAGCTGCCGGTCGGGG+CGG + chr6_2:9929610-9929629 None:intergenic 80.0%
! CGCCCCGACCGGCAGCTGCT+GGG - chr6_2:9929608-9929627 Msa0908820:CDS 80.0%
! CCCCCCAGCCCCCCTTGCTC+TGG + chr6_2:9930737-9930756 None:intergenic 80.0%
! GGCCAGCCGGGCCGTGAGCG+CGG - chr6_2:9929219-9929238 Msa0908820:intron 85.0%
! CACCGCGCTCACGGCCCGGC+TGG + chr6_2:9929224-9929243 None:intergenic 85.0%
! CAGCCGGGCCGTGAGCGCGG+TGG - chr6_2:9929222-9929241 Msa0908820:intron 85.0%
! AGCCAGCCCCGGGCCGGGGT+CGG - chr6_2:9929262-9929281 Msa0908820:intron 85.0%
! CCGCCCCGACCGGCAGCTGC+TGG - chr6_2:9929607-9929626 Msa0908820:CDS 85.0%
! TGCCGACCCCGGCCCGGGGC+TGG + chr6_2:9929267-9929286 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 9928989 9931448 9928989 ID=Msa0908820;Name=Msa0908820
chr6_2 mRNA 9928989 9931448 9928989 ID=Msa0908820-mRNA-1;Parent=Msa0908820;Name=Msa0908820-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0.12|8|0|487
chr6_2 exon 9931337 9931448 9931337 ID=Msa0908820-mRNA-1:exon:2476;Parent=Msa0908820-mRNA-1
chr6_2 exon 9931077 9931217 9931077 ID=Msa0908820-mRNA-1:exon:2475;Parent=Msa0908820-mRNA-1
chr6_2 exon 9930616 9930837 9930616 ID=Msa0908820-mRNA-1:exon:2474;Parent=Msa0908820-mRNA-1
chr6_2 exon 9930378 9930600 9930378 ID=Msa0908820-mRNA-1:exon:2473;Parent=Msa0908820-mRNA-1
chr6_2 exon 9930130 9930362 9930130 ID=Msa0908820-mRNA-1:exon:2472;Parent=Msa0908820-mRNA-1
chr6_2 exon 9929759 9929876 9929759 ID=Msa0908820-mRNA-1:exon:2471;Parent=Msa0908820-mRNA-1
chr6_2 exon 9929567 9929752 9929567 ID=Msa0908820-mRNA-1:exon:2470;Parent=Msa0908820-mRNA-1
chr6_2 exon 9928989 9929217 9928989 ID=Msa0908820-mRNA-1:exon:2469;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9931337 9931448 9931337 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9931077 9931217 9931077 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9930616 9930837 9930616 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9930378 9930600 9930378 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9930130 9930362 9930130 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9929759 9929876 9929759 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9929567 9929752 9929567 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
chr6_2 CDS 9928989 9929217 9928989 ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1
Gene Sequence

>Msa0908820

ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGAGACGAAAGCGCAGGTAATGCCAGTTGGCGAAGTGGCGTTAAGCATCCCTAGCGGCCAGCCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAAGCCAGCCCCGGGCCGGGGTCGGCATAGAATGAAGGGGATGGCCCTAATGTTGTGTTGGCAAAGCCAACTTCTTGGGTTGCGGGCGGAGAAGAGCGGACCTTATCCCCGCCCCGACCGGCAGCTGCTGGGTCTCCCCATCTCTCCTAAACTTCCCCCGGTCTTCGGCCCGAGCTGTATGAGGCAGAAACTCGCCCCACGTACGGTTCGGAGGCCGAGCCCCACCCCAGCAGTAATGGTGCGGCTTAGGTCAACTAACACAAAGAAGATACAGTTCACTCAACGATTGCCTTTGGGTTCCGAACTCCATATGGGGAAGGAGCGTCTCGATCATTTACATGGACCCACTTCTCATTCCATTTGTGGGAATTTGATGATCTATAAACCGTCCCTAACGAACGATCGCCTCATGTTTGAGCATGATGAATCACTTCGTGCCGACCTGTTGCCAATAAACTTTCCGGCCTCATATGAGAATGGAAAACTGGAGAATTTTCTGCATCGGTGGATGAAGAATAGCGAAAATAATAATTTATGGTTGACCATATACTTTAGAGAAACAACGAGCACGACTGAAGTGGCTATACATACAAATCCATTTACGGATAGATATGCTTCGATTGGAACTGGAAGTTCCAGAACAGGCGGCTGGTATACCACCATAATTAAACTGCCTTTTATTTTTTTTATTCGGATAGGATTTATGTTGGCTTCGTCGGGAGGCTCGCGTAGTTTGTTACGTCAGCTCCAAAAGGATAAGTTGCGTTGGAATCGAGAAATATCCTCTAACGTCTTTGCTTGCACGGCTTTCGACCGGGACGGGAAGAGGTTTCCTCGTTGCATCTTTCCACACAGCATTGGTTCTGTCCCTTACCTTACCTTTATCGCCCGTCGGGCGTTCGCATTAGATCCCCTTATCTATCGTATTTTTGCCCCAACAAAAAGCCCAGAGCAAGGGGGGCTGGGGGGGAAAGAATGCAATTCCGGAATCTCAGCCCCACCAAAACCAATGCCAATCGCTGATCTGTTAGTGGACAGAGCTTCTGGGCAATCCATTCTTTCATTCATGGACGGTCACTTAGGAGGGGTTGAAATTAACAATAATAAATCGGGCCAGAAGTTGAAGAATGCCTCTCACACAGATGGACAGCAAAGAAGGCCTTCTAAGGCGGACTCTGGCTCTTTCATTTGTAAGAGTCCTCCTCAGGCACGAGATTGTCCGATGAAGGAGAAACTTGCTGGTTGCCGAGGACAAGAGGGAAGAACCCCTAGGGTGAATCCGTTACAGTTGCGGAATGCGATCACCCATTAG

Protein sequence

>Msa0908820

MRMGVSLAARKHPVLTTLRETKAQVMPVGEVALSIPSGQPGRERGGNGLPKKPAPGRGRHRMKGMALMLCWQSQLLGLRAEKSGPYPRPDRQLLGLPISPKLPPVFGPSCMRQKLAPRTVRRPSPTPAVMVRLRSTNTKKIQFTQRLPLGSELHMGKERLDHLHGPTSHSICGNLMIYKPSLTNDRLMFEHDESLRADLLPINFPASYENGKLENFLHRWMKNSENNNLWLTIYFRETTSTTEVAIHTNPFTDRYASIGTGSSRTGGWYTTIIKLPFIFFIRIGFMLASSGGSRSLLRQLQKDKLRWNREISSNVFACTAFDRDGKRFPRCIFPHSIGSVPYLTFIARRAFALDPLIYRIFAPTKSPEQGGLGGKECNSGISAPPKPMPIADLLVDRASGQSILSFMDGHLGGVEINNNKSGQKLKNASHTDGQQRRPSKADSGSFICKSPPQARDCPMKEKLAGCRGQEGRTPRVNPLQLRNAITH*