Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0908820 | KEH16865.1 | 78.448 | 580 | 10 | 7 | 7 | 487 | 297 | 860 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0908820 | sp|P93286|CCMFC_ARATH | 68.103 | 232 | 64 | 2 | 87 | 308 | 211 | 442 | 8.33e-96 | 299 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0069500 | Msa0908820 | 0.808700 | 2.722247e-50 | -8.615850e-47 |
Msa0908820 | Msa0908830 | 0.826621 | 2.453487e-54 | -8.615850e-47 |
Msa0908820 | Msa0908850 | 0.827426 | 1.575114e-54 | -8.615850e-47 |
Msa0908820 | Msa0920000 | 0.809295 | 2.030247e-50 | -8.615850e-47 |
Msa0908820 | Msa0920060 | 0.852794 | 3.652948e-61 | -8.615850e-47 |
Msa0908820 | Msa0944920 | 0.802986 | 4.324061e-49 | -8.615850e-47 |
Msa0908820 | Msa0944940 | 0.804204 | 2.417294e-49 | -8.615850e-47 |
Msa0908820 | Msa0944950 | 0.957293 | 3.848554e-115 | -8.615850e-47 |
Msa0908820 | Msa0983160 | 0.962460 | 6.643462e-121 | -8.615850e-47 |
Msa0908820 | Msa0983170 | 0.815936 | 7.158692e-52 | -8.615850e-47 |
Msa0908820 | Msa0983190 | 0.811808 | 5.817707e-51 | -8.615850e-47 |
Msa0908820 | Msa0983300 | 0.860747 | 1.664661e-63 | -8.615850e-47 |
Msa0908820 | Msa0983350 | 0.827415 | 1.584301e-54 | -8.615850e-47 |
Msa0908820 | Msa0983460 | 0.823608 | 1.263721e-53 | -8.615850e-47 |
Msa0908820 | Msa0983520 | 0.804746 | 1.863061e-49 | -8.615850e-47 |
Msa0908820 | Msa0983540 | 0.811453 | 6.948576e-51 | -8.615850e-47 |
Msa0908820 | Msa0983550 | 0.964755 | 9.952682e-124 | -8.615850e-47 |
Msa0908820 | Msa1391970 | 0.825613 | 4.261478e-54 | -8.615850e-47 |
Msa0908820 | Msa1392030 | 0.844923 | 5.596947e-59 | -8.615850e-47 |
Msa0908820 | Msa1392120 | 0.819407 | 1.180231e-52 | -8.615850e-47 |
Msa0908820 | Msa1392160 | 0.809801 | 1.581471e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0908820 | MtrunA17_MTg0491381 | 93.868 | 212 | 3 | 2 | 111 | 312 | 1 | 212 | 1.15e-140 | 403 |
Msa0908820 | MtrunA17_Chr6g0457311 | 77.731 | 238 | 42 | 3 | 85 | 312 | 211 | 447 | 2.04e-118 | 355 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0908820 | ATMG00180.1 | 81.347 | 193 | 26 | 2 | 130 | 312 | 254 | 446 | 4.85e-102 | 313 |
Find 159 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGCGAAAATAATAATTTA+TGG | 0.188271 | 6_2:-9930386 | Msa0908820:CDS |
CTGTTAGTGGACAGAGCTTC+TGG | 0.208328 | 6_2:-9929603 | Msa0908820:CDS |
TATGAGGCCGGAAAGTTTAT+TGG | 0.241442 | 6_2:+9930453 | None:intergenic |
AATAAAAGGCAGTTTAATTA+TGG | 0.257005 | 6_2:+9930227 | None:intergenic |
GGTATACCAGCCGCCTGTTC+TGG | 0.261255 | 6_2:+9930251 | None:intergenic |
CCGCCCCGACCGGCAGCTGC+TGG | 0.271520 | 6_2:-9930808 | Msa0908820:CDS |
TCAGCGATTGGCATTGGTTT+TGG | 0.278134 | 6_2:+9929627 | None:intergenic |
TTCTATGCCGACCCCGGCCC+GGG | 0.278863 | 6_2:+9931146 | None:intergenic |
CCTGTTGCCAATAAACTTTC+CGG | 0.284972 | 6_2:-9930460 | Msa0908820:CDS |
GGCTTTGCCAACACAACATT+AGG | 0.291533 | 6_2:+9931110 | None:intergenic |
GAAGCATATCTATCCGTAAA+TGG | 0.301221 | 6_2:+9930291 | None:intergenic |
GAGAGGCATTCTTCAACTTC+TGG | 0.301504 | 6_2:+9929165 | None:intergenic |
GCAATCCATTCTTTCATTCA+TGG | 0.301920 | 6_2:-9929580 | Msa0908820:CDS |
CAGCAGCTGCCGGTCGGGGC+GGG | 0.304794 | 6_2:+9930809 | None:intergenic |
GCCGTGAGCGCGGTGGGAAC+GGG | 0.316107 | 6_2:-9931186 | Msa0908820:CDS |
TCCAACGCAACTTATCCTTT+TGG | 0.321802 | 6_2:+9930139 | None:intergenic |
TGAAATTAACAATAATAAAT+CGG | 0.322581 | 6_2:-9929189 | Msa0908820:CDS |
GGCCGTGAGCGCGGTGGGAA+CGG | 0.322985 | 6_2:-9931187 | Msa0908820:CDS |
TCTCTCAGTGTGGTCAGCAC+TGG | 0.333171 | 6_2:+9931390 | None:intergenic |
AAGCCAACTTCTTGGGTTGC+GGG | 0.342786 | 6_2:-9931092 | Msa0908820:CDS |
TGTTGGCAAAGCCAACTTCT+TGG | 0.342955 | 6_2:-9931100 | Msa0908820:CDS |
ACATGAGGCGATCGTTCGTT+AGG | 0.352912 | 6_2:+9930511 | None:intergenic |
AGACCCAGCAGCTGCCGGTC+GGG | 0.354277 | 6_2:+9930804 | None:intergenic |
CCCACTTCTCATTCCATTTG+TGG | 0.355708 | 6_2:-9930558 | Msa0908820:CDS |
ATTACTGCTGGGGTGGGGCT+CGG | 0.356446 | 6_2:+9930702 | None:intergenic |
GTTCACTCAACGATTGCCTT+TGG | 0.367519 | 6_2:-9930643 | Msa0908820:CDS |
GAGCCAGAGTCCGCCTTAGA+AGG | 0.372563 | 6_2:+9929119 | None:intergenic |
CTCTCAGTGTGGTCAGCACT+GGG | 0.376688 | 6_2:+9931391 | None:intergenic |
CAGCAGTAATGGTGCGGCTT+AGG | 0.383155 | 6_2:-9930689 | Msa0908820:CDS |
GATCATCAAATTCCCACAAA+TGG | 0.389159 | 6_2:+9930545 | None:intergenic |
TTTGGGTTCCGAACTCCATA+TGG | 0.390141 | 6_2:-9930625 | Msa0908820:CDS |
TATACATACAAATCCATTTA+CGG | 0.398392 | 6_2:-9930304 | Msa0908820:CDS |
TTCACTCAACGATTGCCTTT+GGG | 0.400692 | 6_2:-9930642 | Msa0908820:CDS |
CTTAACGCCACTTCGCCAAC+TGG | 0.402672 | 6_2:+9931348 | None:intergenic |
AAAGCCAACTTCTTGGGTTG+CGG | 0.404798 | 6_2:-9931093 | Msa0908820:CDS |
GGATTTATGTTGGCTTCGTC+GGG | 0.406463 | 6_2:-9930189 | Msa0908820:CDS |
TTGCTTGCACGGCTTTCGAC+CGG | 0.410329 | 6_2:-9929839 | Msa0908820:CDS |
AGGATTTATGTTGGCTTCGT+CGG | 0.413029 | 6_2:-9930190 | Msa0908820:CDS |
GACCCAGCAGCTGCCGGTCG+GGG | 0.413579 | 6_2:+9930805 | None:intergenic |
CCACTTCTCATTCCATTTGT+GGG | 0.416058 | 6_2:-9930557 | Msa0908820:CDS |
ATTCTATGCCGACCCCGGCC+CGG | 0.419460 | 6_2:+9931145 | None:intergenic |
CTTTCGACCGGGACGGGAAG+AGG | 0.420223 | 6_2:-9929827 | Msa0908820:CDS |
CGAGGTCTCGATCATTTACA+TGG | 0.420959 | 6_2:-9930582 | Msa0908820:intron |
ACAGCAAAGAAGGCCTTCTA+AGG | 0.428985 | 6_2:-9929132 | Msa0908820:CDS |
AGATATGCTTCGATTGGAAC+TGG | 0.429623 | 6_2:-9930279 | Msa0908820:CDS |
CGTGCAAGCAAAGACGTTAG+AGG | 0.430977 | 6_2:+9929851 | None:intergenic |
GCTTTGCCAACACAACATTA+GGG | 0.431283 | 6_2:+9931111 | None:intergenic |
GTTGGCAAAGCCAACTTCTT+GGG | 0.432759 | 6_2:-9931099 | Msa0908820:CDS |
CCGGAAAGTTTATTGGCAAC+AGG | 0.434595 | 6_2:+9930460 | None:intergenic |
ATACAGCTCGGGCCGAAGAC+CGG | 0.442080 | 6_2:+9930759 | None:intergenic |
CTCATATGAGAATGGAAAAC+TGG | 0.445029 | 6_2:-9930436 | Msa0908820:CDS |
TTCCCACCGCGCTCACGGCC+CGG | 0.445440 | 6_2:+9931190 | None:intergenic |
CGCACCATTACTGCTGGGGT+GGG | 0.445863 | 6_2:+9930696 | None:intergenic |
CTACCGCTGGAAGGCCAGCC+GGG | 0.449228 | 6_2:-9931208 | Msa0908820:intron |
CATTCATGGACGGTCACTTA+GGG | 0.451324 | 6_2:-9929566 | Msa0908820:intron |
GCCAATCGCTGATCTGTTAG+TGG | 0.452923 | 6_2:-9929616 | Msa0908820:CDS |
GAAATTAACAATAATAAATC+GGG | 0.458057 | 6_2:-9929188 | Msa0908820:CDS |
CCGATGAAGGAGAAACTTGC+TGG | 0.458697 | 6_2:-9929059 | Msa0908820:CDS |
CCGCACCATTACTGCTGGGG+TGG | 0.460417 | 6_2:+9930695 | None:intergenic |
ACGGATAGATATGCTTCGAT+TGG | 0.460582 | 6_2:-9930285 | Msa0908820:CDS |
TCATTCATGGACGGTCACTT+AGG | 0.462564 | 6_2:-9929567 | Msa0908820:CDS |
AACAACGCTCCTTCCCCATA+TGG | 0.463316 | 6_2:+9930610 | None:intergenic |
GGGTTCTTCCCTCTTGTCCT+CGG | 0.463897 | 6_2:+9929033 | None:intergenic |
CTCCTTCCCCATATGGAGTT+CGG | 0.467009 | 6_2:+9930617 | None:intergenic |
CTCTAACGTCTTTGCTTGCA+CGG | 0.470171 | 6_2:-9929850 | Msa0908820:CDS |
AACAGATCAGCGATTGGCAT+TGG | 0.472540 | 6_2:+9929621 | None:intergenic |
AACTCGCCCCACGTACGGTT+CGG | 0.472758 | 6_2:-9930728 | Msa0908820:CDS |
CCAGCAGCTGCCGGTCGGGG+CGG | 0.473246 | 6_2:+9930808 | None:intergenic |
CATTTGTAAGAGTCCTCCTC+AGG | 0.476570 | 6_2:-9929093 | Msa0908820:CDS |
GAGACCCAGCAGCTGCCGGT+CGG | 0.477652 | 6_2:+9930803 | None:intergenic |
TGCTTGCACGGCTTTCGACC+GGG | 0.478724 | 6_2:-9929838 | Msa0908820:CDS |
ACTACCGCTGGAAGGCCAGC+CGG | 0.483155 | 6_2:-9931209 | Msa0908820:intron |
AAGCTTATCCCCGCCCCGAC+CGG | 0.485515 | 6_2:-9930818 | Msa0908820:CDS |
TGTTAGTGGACAGAGCTTCT+GGG | 0.489545 | 6_2:-9929602 | Msa0908820:CDS |
TTGGGTTCCGAACTCCATAT+GGG | 0.491526 | 6_2:-9930624 | Msa0908820:CDS |
ACCTTACCTTTATCGCCCGT+CGG | 0.491998 | 6_2:-9929761 | Msa0908820:CDS |
TGCATCTTTCCACACAGCAT+TGG | 0.492653 | 6_2:-9929795 | Msa0908820:CDS |
AGCAGACGTAGGCTTCTAAT+GGG | 0.496092 | 6_2:+9928974 | None:intergenic |
CAGCCGGGCCGTGAGCGCGG+TGG | 0.498669 | 6_2:-9931193 | Msa0908820:CDS |
AAAAGGCAGTTTAATTATGG+TGG | 0.498772 | 6_2:+9930230 | None:intergenic |
TGCACGGCTTTCGACCGGGA+CGG | 0.500492 | 6_2:-9929834 | Msa0908820:CDS |
TCTTCGGCCCGAGCTGTATG+AGG | 0.501176 | 6_2:-9930755 | Msa0908820:CDS |
CCGCCCGCAACCCAAGAAGT+TGG | 0.504276 | 6_2:+9931089 | None:intergenic |
TATTCGGATAGGATTTATGT+TGG | 0.504584 | 6_2:-9930199 | Msa0908820:CDS |
CTAAGCCGCACCATTACTGC+TGG | 0.504746 | 6_2:+9930690 | None:intergenic |
ACACAGATGGACAGCAAAGA+AGG | 0.509516 | 6_2:-9929142 | Msa0908820:CDS |
AGGCCTTCTAAGGCGGACTC+TGG | 0.509544 | 6_2:-9929122 | Msa0908820:CDS |
GAGCCCCACCCCAGCAGTAA+TGG | 0.510043 | 6_2:-9930700 | Msa0908820:CDS |
TGCGAACCTTGACGCCCGAC+GGG | 0.510569 | 6_2:+9929746 | None:intergenic |
AGTTTCTGCCTCATACAGCT+CGG | 0.515951 | 6_2:+9930747 | None:intergenic |
TGGGGAGACCCAGCAGCTGC+CGG | 0.516111 | 6_2:+9930799 | None:intergenic |
GGAACTGGAAGTTCCAGAAC+AGG | 0.517306 | 6_2:-9930264 | Msa0908820:CDS |
CCTTACCTTTATCGCCCGTC+GGG | 0.525411 | 6_2:-9929760 | Msa0908820:CDS |
CCAGCAAGTTTCTCCTTCAT+CGG | 0.526011 | 6_2:+9929059 | None:intergenic |
CATGAGGCGATCGTTCGTTA+GGG | 0.530158 | 6_2:+9930512 | None:intergenic |
ACCGTCCATGAATGAAAGAA+TGG | 0.534673 | 6_2:+9929575 | None:intergenic |
TTTGTTACGTCAGCTCCAAA+AGG | 0.535085 | 6_2:-9930154 | Msa0908820:CDS |
GCACCATTACTGCTGGGGTG+GGG | 0.538302 | 6_2:+9930697 | None:intergenic |
TTTCCGGCCTCATATGAGAA+TGG | 0.538939 | 6_2:-9930444 | Msa0908820:CDS |
CGGGCGATAAAGGTAAGGTA+AGG | 0.541179 | 6_2:+9929765 | None:intergenic |
GGCACGAGATTGTCCGATGA+AGG | 0.542322 | 6_2:-9929072 | Msa0908820:CDS |
CCTTCATTCTATGCCGACCC+CGG | 0.542373 | 6_2:+9931140 | None:intergenic |
TCCATTCTTTCATTCATGGA+CGG | 0.545247 | 6_2:-9929576 | Msa0908820:CDS |
CATCTCTCCTAAACTTCCCC+CGG | 0.547799 | 6_2:-9930778 | Msa0908820:CDS |
GTTTCTGCCTCATACAGCTC+GGG | 0.549518 | 6_2:+9930748 | None:intergenic |
GAGGAAACCTCTTCCCGTCC+CGG | 0.552826 | 6_2:+9929820 | None:intergenic |
AACTGTAACGGATTCACCCT+AGG | 0.553495 | 6_2:+9929011 | None:intergenic |
TTGCTGTCCATCTGTGTGAG+AGG | 0.557091 | 6_2:+9929148 | None:intergenic |
TGGGTGTAAGCCTCGCTGCT+CGG | 0.557420 | 6_2:-9931419 | Msa0908820:CDS |
TGCTGGTTGCCGAGGACAAG+AGG | 0.565924 | 6_2:-9929042 | Msa0908820:CDS |
CGGGGTCGGCATAGAATGAA+GGG | 0.567642 | 6_2:-9931139 | Msa0908820:CDS |
TTTATGTTGGCTTCGTCGGG+AGG | 0.568263 | 6_2:-9930186 | Msa0908820:CDS |
GCAGAAACTCGCCCCACGTA+CGG | 0.568645 | 6_2:-9930733 | Msa0908820:CDS |
TTTCCATTCTCATATGAGGC+CGG | 0.569642 | 6_2:+9930441 | None:intergenic |
GGGTGAATCCGTTACAGTTG+CGG | 0.572733 | 6_2:-9929007 | Msa0908820:CDS |
AGGCGATCGTTCGTTAGGGA+CGG | 0.574187 | 6_2:+9930516 | None:intergenic |
TAAGCCGCACCATTACTGCT+GGG | 0.575414 | 6_2:+9930691 | None:intergenic |
CCCACAAATGGAATGAGAAG+TGG | 0.576883 | 6_2:+9930557 | None:intergenic |
ACTGTAACGGATTCACCCTA+GGG | 0.580403 | 6_2:+9929012 | None:intergenic |
GAGAAACTTGCTGGTTGCCG+AGG | 0.584163 | 6_2:-9929050 | Msa0908820:CDS |
AAGAATGCCTCTCACACAGA+TGG | 0.589254 | 6_2:-9929155 | Msa0908820:CDS |
GGACAATCTCGTGCCTGAGG+AGG | 0.591046 | 6_2:+9929080 | None:intergenic |
AACAACGAGCACGACTGAAG+TGG | 0.592537 | 6_2:-9930328 | Msa0908820:CDS |
TCGCCCCACGTACGGTTCGG+AGG | 0.595092 | 6_2:-9930725 | Msa0908820:CDS |
ATCGGACAATCTCGTGCCTG+AGG | 0.595328 | 6_2:+9929077 | None:intergenic |
TCCACTAACAGATCAGCGAT+TGG | 0.597249 | 6_2:+9929615 | None:intergenic |
TCCAAAAGGATAAGTTGCGT+TGG | 0.598164 | 6_2:-9930140 | Msa0908820:CDS |
CCAACTTCTTGGGTTGCGGG+CGG | 0.601762 | 6_2:-9931089 | Msa0908820:CDS |
TTCCGAACTCCATATGGGGA+AGG | 0.601852 | 6_2:-9930619 | Msa0908820:CDS |
CCACAAATGGAATGAGAAGT+GGG | 0.607621 | 6_2:+9930558 | None:intergenic |
TTGGATGAACTAATGCGAAT+GGG | 0.608426 | 6_2:-9931438 | None:intergenic |
GGGTTGCGGGCGGAGAAGAG+CGG | 0.611745 | 6_2:-9931079 | Msa0908820:CDS |
GGGCGATAAAGGTAAGGTAA+GGG | 0.613080 | 6_2:+9929766 | None:intergenic |
TTTGGATGAACTAATGCGAA+TGG | 0.616157 | 6_2:-9931439 | None:intergenic |
GGTAATGCCAGTTGGCGAAG+TGG | 0.617022 | 6_2:-9931355 | Msa0908820:CDS |
AAAGTTTATTGGCAACAGGT+CGG | 0.617299 | 6_2:+9930464 | None:intergenic |
GGATGGCCCTAATGTTGTGT+TGG | 0.624287 | 6_2:-9931117 | Msa0908820:CDS |
CCACCCCAGCAGTAATGGTG+CGG | 0.624478 | 6_2:-9930695 | Msa0908820:CDS |
AAAGCGCAGGTAATGCCAGT+TGG | 0.627476 | 6_2:-9931363 | Msa0908820:CDS |
CGGCCTCCGAACCGTACGTG+GGG | 0.627484 | 6_2:+9930722 | None:intergenic |
GCAAAGAAGGCCTTCTAAGG+CGG | 0.631599 | 6_2:-9929129 | Msa0908820:CDS |
CGCTTTCGTCTCTCTCAGTG+TGG | 0.633261 | 6_2:+9931380 | None:intergenic |
ATTCATCATGCTCAAACATG+AGG | 0.643382 | 6_2:+9930496 | None:intergenic |
GCTGGTTGCCGAGGACAAGA+GGG | 0.644222 | 6_2:-9929041 | Msa0908820:CDS |
TGGGTTCCGAACTCCATATG+GGG | 0.648864 | 6_2:-9930623 | Msa0908820:CDS |
ACAAGAGGGAAGAACCCCTA+GGG | 0.649278 | 6_2:-9929027 | Msa0908820:CDS |
GACAAGAGGGAAGAACCCCT+AGG | 0.649952 | 6_2:-9929028 | Msa0908820:CDS |
TCGGCATAGAATGAAGGGGA+TGG | 0.655914 | 6_2:-9931134 | Msa0908820:CDS |
AAGCCGCACCATTACTGCTG+GGG | 0.656288 | 6_2:+9930692 | None:intergenic |
ACTGAGAGAGACGAAAGCGC+AGG | 0.664834 | 6_2:-9931376 | Msa0908820:CDS |
ACTGGAAGTTCCAGAACAGG+CGG | 0.667091 | 6_2:-9930261 | Msa0908820:CDS |
CTGGGTGTTTCCGAGCAGCG+AGG | 0.675742 | 6_2:+9931409 | None:intergenic |
GGGGTCGGCATAGAATGAAG+GGG | 0.682209 | 6_2:-9931138 | Msa0908820:CDS |
GGGACAGAACCAATGCTGTG+TGG | 0.684133 | 6_2:+9929786 | None:intergenic |
ATATGGAGTTCGGAACCCAA+AGG | 0.687361 | 6_2:+9930627 | None:intergenic |
GGGGAAGTTTAGGAGAGATG+GGG | 0.694692 | 6_2:+9930781 | None:intergenic |
CTGTAACGGATTCACCCTAG+GGG | 0.770874 | 6_2:+9929013 | None:intergenic |
CTGTGTGGAAAGATGCAACG+AGG | 0.793122 | 6_2:+9929801 | None:intergenic |
GTGGCGTTAAGCATCCCTAG+CGG | 0.814346 | 6_2:-9931336 | Msa0908820:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATTAACAATAATAAAT+CGG | - | chr6_2:9931226-9931245 | Msa0908820:intron | 10.0% |
!!! | TATAGTATATAAATGGATTT+TGG | - | chr6_2:9929555-9929574 | Msa0908820:intron | 15.0% |
!!! | ATAGTATATAAATGGATTTT+GGG | - | chr6_2:9929556-9929575 | Msa0908820:intron | 15.0% |
!! | ATAGCGAAAATAATAATTTA+TGG | - | chr6_2:9930029-9930048 | Msa0908820:intron | 15.0% |
!!! | TGCCTTTTATTTTTTTTATT+CGG | - | chr6_2:9930200-9930219 | Msa0908820:CDS | 15.0% |
!! | ATCCGAATAAAAAAAATAAA+AGG | + | chr6_2:9930205-9930224 | None:intergenic | 15.0% |
!!! | TTTATTTTTTTTATTCGGAT+AGG | - | chr6_2:9930205-9930224 | Msa0908820:CDS | 15.0% |
!! | AATTGCATTAAAAAAATCAA+AGG | - | chr6_2:9930324-9930343 | Msa0908820:CDS | 15.0% |
!! | GAAATTAACAATAATAAATC+GGG | - | chr6_2:9931227-9931246 | Msa0908820:intron | 15.0% |
!!! | TATTTCATCCCATTTTTTTT+CGG | + | chr6_2:9929512-9929531 | None:intergenic | 20.0% |
!!! | TAGTATATAAATGGATTTTG+GGG | - | chr6_2:9929557-9929576 | Msa0908820:intron | 20.0% |
!! | TATACATACAAATCCATTTA+CGG | - | chr6_2:9930111-9930130 | Msa0908820:intron | 20.0% |
!! | AATAAAAGGCAGTTTAATTA+TGG | + | chr6_2:9930191-9930210 | None:intergenic | 20.0% |
!!! | AAATGCACATTTATTTTTAC+GGG | + | chr6_2:9931156-9931175 | None:intergenic | 20.0% |
!!! | CAAATGCACATTTATTTTTA+CGG | + | chr6_2:9931157-9931176 | None:intergenic | 20.0% |
!!! | ATTTCATCCCATTTTTTTTC+GGG | + | chr6_2:9929511-9929530 | None:intergenic | 25.0% |
!!! | AGTATATAAATGGATTTTGG+GGG | - | chr6_2:9929558-9929577 | Msa0908820:intron | 25.0% |
!!! | CTCTAAAGTATCTTTTTTCT+GGG | + | chr6_2:9930066-9930085 | None:intergenic | 25.0% |
!!! | TCTCTAAAGTATCTTTTTTC+TGG | + | chr6_2:9930067-9930086 | None:intergenic | 25.0% |
! | TAATGCAATTAAGAATTCCA+CGG | + | chr6_2:9930314-9930333 | None:intergenic | 25.0% |
! | TAAGATTGCTTAATGAGTTA+TGG | + | chr6_2:9930495-9930514 | None:intergenic | 25.0% |
CTAGCGCTATAGTATATAAA+TGG | - | chr6_2:9929548-9929567 | Msa0908820:intron | 30.0% | |
!! | GTATATAAATGGATTTTGGG+GGG | - | chr6_2:9929559-9929578 | Msa0908820:intron | 30.0% |
!! | TATATAAATGGATTTTGGGG+GGG | - | chr6_2:9929560-9929579 | Msa0908820:intron | 30.0% |
AAAAGGCAGTTTAATTATGG+TGG | + | chr6_2:9930188-9930207 | None:intergenic | 30.0% | |
TATTCGGATAGGATTTATGT+TGG | - | chr6_2:9930216-9930235 | Msa0908820:CDS | 30.0% | |
GCAAAAATACGATAGATAAG+GGG | + | chr6_2:9930701-9930720 | None:intergenic | 30.0% | |
GGCAAAAATACGATAGATAA+GGG | + | chr6_2:9930702-9930721 | None:intergenic | 30.0% | |
CAATAAACTAATGGAAGATG+AGG | + | chr6_2:9931020-9931039 | None:intergenic | 30.0% | |
CGATGTTGACAATAAACTAA+TGG | + | chr6_2:9931029-9931048 | None:intergenic | 30.0% | |
TAGTTGTTAAGTCTTTCCTT+CGG | - | chr6_2:9931073-9931092 | Msa0908820:intron | 30.0% | |
TAAGAGAGCCATTCCATTTA+GGG | - | chr6_2:9929391-9929410 | Msa0908820:intron | 35.0% | |
!!! | ATCCCATTTTTTTTCGGGAT+AGG | + | chr6_2:9929506-9929525 | None:intergenic | 35.0% |
GATCATCAAATTCCCACAAA+TGG | + | chr6_2:9929873-9929892 | None:intergenic | 35.0% | |
ATTCATCATGCTCAAACATG+AGG | + | chr6_2:9929922-9929941 | None:intergenic | 35.0% | |
AAAGTTTATTGGCAACAGGT+CGG | + | chr6_2:9929954-9929973 | None:intergenic | 35.0% | |
! | CAGTTTTCCATTCTCATATG+AGG | + | chr6_2:9929981-9930000 | None:intergenic | 35.0% |
CTCATATGAGAATGGAAAAC+TGG | - | chr6_2:9929979-9929998 | Msa0908820:intron | 35.0% | |
! | AACTGGAGAATTTTCTGCAT+CGG | - | chr6_2:9929996-9930015 | Msa0908820:intron | 35.0% |
!!! | GTATCTTTTTTCTGGGAACA+TGG | + | chr6_2:9930059-9930078 | None:intergenic | 35.0% |
GAAGCATATCTATCCGTAAA+TGG | + | chr6_2:9930127-9930146 | None:intergenic | 35.0% | |
TCAATCAATAGAGGCTAGAT+CGG | - | chr6_2:9930361-9930380 | Msa0908820:intron | 35.0% | |
CTCATGTCAGTATTATCACA+GGG | + | chr6_2:9930446-9930465 | None:intergenic | 35.0% | |
ACTCATGTCAGTATTATCAC+AGG | + | chr6_2:9930447-9930466 | None:intergenic | 35.0% | |
TGATAATACTGACATGAGTC+AGG | - | chr6_2:9930448-9930467 | Msa0908820:CDS | 35.0% | |
GGGCAAAAATACGATAGATA+AGG | + | chr6_2:9930703-9930722 | None:intergenic | 35.0% | |
GCAATCCATTCTTTCATTCA+TGG | - | chr6_2:9930835-9930854 | Msa0908820:intron | 35.0% | |
TCCATTCTTTCATTCATGGA+CGG | - | chr6_2:9930839-9930858 | Msa0908820:intron | 35.0% | |
GTTTATTGTCAACATCGTAG+AGG | - | chr6_2:9931032-9931051 | Msa0908820:intron | 35.0% | |
AGTTGTTAAGTCTTTCCTTC+GGG | - | chr6_2:9931074-9931093 | Msa0908820:intron | 35.0% | |
TGTTGTGCACTAAGAACTTT+AGG | + | chr6_2:9931199-9931218 | None:intergenic | 35.0% | |
GCTTTGCCAACACAACATTA+GGG | + | chr6_2:9929307-9929326 | None:intergenic | 40.0% | |
CTAAGAGAGCCATTCCATTT+AGG | - | chr6_2:9929390-9929409 | Msa0908820:intron | 40.0% | |
!!! | CCATTTTTTTTCGGGATAGG+CGG | + | chr6_2:9929503-9929522 | None:intergenic | 40.0% |
CGCCTATCCCGAAAAAAAAT+GGG | - | chr6_2:9929501-9929520 | Msa0908820:intron | 40.0% | |
TTCACTCAACGATTGCCTTT+GGG | - | chr6_2:9929773-9929792 | Msa0908820:CDS | 40.0% | |
CATGTAAATGATCGAGACCT+CGG | + | chr6_2:9929835-9929854 | None:intergenic | 40.0% | |
CCACAAATGGAATGAGAAGT+GGG | + | chr6_2:9929860-9929879 | None:intergenic | 40.0% | |
CCACTTCTCATTCCATTTGT+GGG | - | chr6_2:9929858-9929877 | Msa0908820:intron | 40.0% | |
CCTGTTGCCAATAAACTTTC+CGG | - | chr6_2:9929955-9929974 | Msa0908820:intron | 40.0% | |
TATGAGGCCGGAAAGTTTAT+TGG | + | chr6_2:9929965-9929984 | None:intergenic | 40.0% | |
TTTCCATTCTCATATGAGGC+CGG | + | chr6_2:9929977-9929996 | None:intergenic | 40.0% | |
ACGGATAGATATGCTTCGAT+TGG | - | chr6_2:9930130-9930149 | Msa0908820:CDS | 40.0% | |
AGATATGCTTCGATTGGAAC+TGG | - | chr6_2:9930136-9930155 | Msa0908820:CDS | 40.0% | |
!! | AGGATTTATGTTGGCTTCGT+CGG | - | chr6_2:9930225-9930244 | Msa0908820:CDS | 40.0% |
TTTGTTACGTCAGCTCCAAA+AGG | - | chr6_2:9930261-9930280 | Msa0908820:CDS | 40.0% | |
TCCAAAAGGATAAGTTGCGT+TGG | - | chr6_2:9930275-9930294 | Msa0908820:CDS | 40.0% | |
! | TCCAACGCAACTTATCCTTT+TGG | + | chr6_2:9930279-9930298 | None:intergenic | 40.0% |
TCAACCCTCTCAATCAATAG+AGG | - | chr6_2:9930352-9930371 | Msa0908820:intron | 40.0% | |
! | CTAGCCTCTATTGATTGAGA+GGG | + | chr6_2:9930359-9930378 | None:intergenic | 40.0% |
! | TCTAGCCTCTATTGATTGAG+AGG | + | chr6_2:9930360-9930379 | None:intergenic | 40.0% |
GGATAAATCCGAATGACTAG+TGG | - | chr6_2:9930469-9930488 | Msa0908820:CDS | 40.0% | |
AGTTATGGCCACTAGTCATT+CGG | + | chr6_2:9930480-9930499 | None:intergenic | 40.0% | |
ACCGTCCATGAATGAAAGAA+TGG | + | chr6_2:9930843-9930862 | None:intergenic | 40.0% | |
! | CCTCTTTGGAGATGAAAAGA+AGG | + | chr6_2:9930880-9930899 | None:intergenic | 40.0% |
! | CCTTCTTTTCATCTCCAAAG+AGG | - | chr6_2:9930877-9930896 | Msa0908820:intron | 40.0% |
TATTGTCAACATCGTAGAGG+TGG | - | chr6_2:9931035-9931054 | Msa0908820:intron | 40.0% | |
AGATCAGACAAATAACCCGA+AGG | + | chr6_2:9931092-9931111 | None:intergenic | 40.0% | |
AAGTTCTTAGTGCACAACAG+AGG | - | chr6_2:9931200-9931219 | Msa0908820:intron | 40.0% | |
AGTTCTTAGTGCACAACAGA+GGG | - | chr6_2:9931201-9931220 | Msa0908820:intron | 40.0% | |
! | TCAAAGACTTGGTTGGATGC+GGG | + | chr6_2:9929165-9929184 | None:intergenic | 45.0% |
! | GTCAAAGACTTGGTTGGATG+CGG | + | chr6_2:9929166-9929185 | None:intergenic | 45.0% |
ATCCAACCAAGTCTTTGACC+AGG | - | chr6_2:9929167-9929186 | Msa0908820:CDS | 45.0% | |
TCCAACCAAGTCTTTGACCA+GGG | - | chr6_2:9929168-9929187 | Msa0908820:CDS | 45.0% | |
GGCTTTGCCAACACAACATT+AGG | + | chr6_2:9929308-9929327 | None:intergenic | 45.0% | |
TGTTGGCAAAGCCAACTTCT+TGG | - | chr6_2:9929315-9929334 | Msa0908820:intron | 45.0% | |
GTTGGCAAAGCCAACTTCTT+GGG | - | chr6_2:9929316-9929335 | Msa0908820:intron | 45.0% | |
! | AAAGCCAACTTCTTGGGTTG+CGG | - | chr6_2:9929322-9929341 | Msa0908820:intron | 45.0% |
! | CATTTAGGGCGAGACAGAAT+GGG | - | chr6_2:9929405-9929424 | Msa0908820:intron | 45.0% |
CCGCCTATCCCGAAAAAAAA+TGG | - | chr6_2:9929500-9929519 | Msa0908820:intron | 45.0% | |
AGTTTCTGCCTCATACAGCT+CGG | + | chr6_2:9929671-9929690 | None:intergenic | 45.0% | |
GTTCACTCAACGATTGCCTT+TGG | - | chr6_2:9929772-9929791 | Msa0908820:CDS | 45.0% | |
ATATGGAGTTCGGAACCCAA+AGG | + | chr6_2:9929791-9929810 | None:intergenic | 45.0% | |
! | TTTGGGTTCCGAACTCCATA+TGG | - | chr6_2:9929790-9929809 | Msa0908820:CDS | 45.0% |
TTGGGTTCCGAACTCCATAT+GGG | - | chr6_2:9929791-9929810 | Msa0908820:CDS | 45.0% | |
CGAGGTCTCGATCATTTACA+TGG | - | chr6_2:9929833-9929852 | Msa0908820:CDS | 45.0% | |
CCCACTTCTCATTCCATTTG+TGG | - | chr6_2:9929857-9929876 | Msa0908820:CDS | 45.0% | |
CCCACAAATGGAATGAGAAG+TGG | + | chr6_2:9929861-9929880 | None:intergenic | 45.0% | |
CCGGAAAGTTTATTGGCAAC+AGG | + | chr6_2:9929958-9929977 | None:intergenic | 45.0% | |
TTTCCGGCCTCATATGAGAA+TGG | - | chr6_2:9929971-9929990 | Msa0908820:intron | 45.0% | |
! | TGGAGAATTTTCTGCATCGG+TGG | - | chr6_2:9929999-9930018 | Msa0908820:intron | 45.0% |
!! | GGATTTATGTTGGCTTCGTC+GGG | - | chr6_2:9930226-9930245 | Msa0908820:CDS | 45.0% |
TTGGAATCGAGAAAGTTCCG+TGG | - | chr6_2:9930294-9930313 | Msa0908820:CDS | 45.0% | |
ATAGAGGCTAGATCGGACTA+AGG | - | chr6_2:9930368-9930387 | Msa0908820:intron | 45.0% | |
GAGGAAAGGCTAAGCGAAAA+AGG | + | chr6_2:9930519-9930538 | None:intergenic | 45.0% | |
CGTAACGGTAGAAAGAGGAA+AGG | + | chr6_2:9930533-9930552 | None:intergenic | 45.0% | |
CATCTCGTAACGGTAGAAAG+AGG | + | chr6_2:9930538-9930557 | None:intergenic | 45.0% | |
GAGGATACTGCATCTCGTAA+CGG | + | chr6_2:9930548-9930567 | None:intergenic | 45.0% | |
CTCTAACGTCTTTGCTTGCA+CGG | - | chr6_2:9930565-9930584 | Msa0908820:CDS | 45.0% | |
TGCATCTTTCCACACAGCAT+TGG | - | chr6_2:9930620-9930639 | Msa0908820:CDS | 45.0% | |
GGGCGATAAAGGTAAGGTAA+GGG | + | chr6_2:9930652-9930671 | None:intergenic | 45.0% | |
!! | TTGCTCTGGGCTTTTTGTTG+GGG | + | chr6_2:9930723-9930742 | None:intergenic | 45.0% |
!! | CTTGCTCTGGGCTTTTTGTT+GGG | + | chr6_2:9930724-9930743 | None:intergenic | 45.0% |
CAACAAAAAGCCCAGAGCAA+GGG | - | chr6_2:9930723-9930742 | Msa0908820:CDS | 45.0% | |
AACAAAAAGCCCAGAGCAAG+GGG | - | chr6_2:9930724-9930743 | Msa0908820:CDS | 45.0% | |
!!! | GATTGGCATTGGTTTTGGTG+GGG | + | chr6_2:9930786-9930805 | None:intergenic | 45.0% |
!!! | CGATTGGCATTGGTTTTGGT+GGG | + | chr6_2:9930787-9930806 | None:intergenic | 45.0% |
!!! | TCAGCGATTGGCATTGGTTT+TGG | + | chr6_2:9930791-9930810 | None:intergenic | 45.0% |
AACAGATCAGCGATTGGCAT+TGG | + | chr6_2:9930797-9930816 | None:intergenic | 45.0% | |
TCCACTAACAGATCAGCGAT+TGG | + | chr6_2:9930803-9930822 | None:intergenic | 45.0% | |
! | TGTTAGTGGACAGAGCTTCT+GGG | - | chr6_2:9930813-9930832 | Msa0908820:CDS | 45.0% |
TCATTCATGGACGGTCACTT+AGG | - | chr6_2:9930848-9930867 | Msa0908820:intron | 45.0% | |
CATTCATGGACGGTCACTTA+GGG | - | chr6_2:9930849-9930868 | Msa0908820:intron | 45.0% | |
TTTCATCTCCAAAGAGGACG+AGG | - | chr6_2:9930883-9930902 | Msa0908820:intron | 45.0% | |
!! | TGTTTTTGCCTCGTCCTCTT+TGG | + | chr6_2:9930894-9930913 | None:intergenic | 45.0% |
AAAAACAGCGTTCCGTTGTC+CGG | - | chr6_2:9930907-9930926 | Msa0908820:intron | 45.0% | |
ATAGCGTTCTTCAGACCGAA+GGG | + | chr6_2:9930973-9930992 | None:intergenic | 45.0% | |
TATAGCGTTCTTCAGACCGA+AGG | + | chr6_2:9930974-9930993 | None:intergenic | 45.0% | |
TGTGCATTTGACGTAACAGC+AGG | - | chr6_2:9931167-9931186 | Msa0908820:CDS | 45.0% | |
GTTCTTAGTGCACAACAGAG+GGG | - | chr6_2:9931202-9931221 | Msa0908820:intron | 45.0% | |
!! | GAGAGGCATTCTTCAACTTC+TGG | + | chr6_2:9931253-9931272 | None:intergenic | 45.0% |
AAGAATGCCTCTCACACAGA+TGG | - | chr6_2:9931260-9931279 | Msa0908820:intron | 45.0% | |
ACACAGATGGACAGCAAAGA+AGG | - | chr6_2:9931273-9931292 | Msa0908820:intron | 45.0% | |
ACAGCAAAGAAGGCCTTCTA+AGG | - | chr6_2:9931283-9931302 | Msa0908820:intron | 45.0% | |
CATTTGTAAGAGTCCTCCTC+AGG | - | chr6_2:9931322-9931341 | Msa0908820:intron | 45.0% | |
CCAGCAAGTTTCTCCTTCAT+CGG | + | chr6_2:9931359-9931378 | None:intergenic | 45.0% | |
!! | ACTGTAACGGATTCACCCTA+GGG | + | chr6_2:9931406-9931425 | None:intergenic | 45.0% |
!! | AACTGTAACGGATTCACCCT+AGG | + | chr6_2:9931407-9931426 | None:intergenic | 45.0% |
ATCGCATTCCGCAACTGTAA+CGG | + | chr6_2:9931419-9931438 | None:intergenic | 45.0% | |
AAAGCGCAGGTAATGCCAGT+TGG | - | chr6_2:9929052-9929071 | Msa0908820:CDS | 50.0% | |
! | CCTCTCTTTTCGTACCGCTA+GGG | + | chr6_2:9929096-9929115 | None:intergenic | 50.0% |
! | ACCTCTCTTTTCGTACCGCT+AGG | + | chr6_2:9929097-9929116 | None:intergenic | 50.0% |
! | TCCCTGGTCAAAGACTTGGT+TGG | + | chr6_2:9929172-9929191 | None:intergenic | 50.0% |
CCAAGTCTTTGACCAGGGAA+CGG | - | chr6_2:9929173-9929192 | Msa0908820:CDS | 50.0% | |
CAAGTCTTTGACCAGGGAAC+GGG | - | chr6_2:9929174-9929193 | Msa0908820:CDS | 50.0% | |
TAATTCCCACTACCGCTGGA+AGG | - | chr6_2:9929198-9929217 | Msa0908820:CDS | 50.0% | |
TCGGCATAGAATGAAGGGGA+TGG | - | chr6_2:9929281-9929300 | Msa0908820:intron | 50.0% | |
GGATGGCCCTAATGTTGTGT+TGG | - | chr6_2:9929298-9929317 | Msa0908820:intron | 50.0% | |
! | AAGCCAACTTCTTGGGTTGC+GGG | - | chr6_2:9929323-9929342 | Msa0908820:intron | 50.0% |
CTGTCTCGCCCTAAATGGAA+TGG | + | chr6_2:9929402-9929421 | None:intergenic | 50.0% | |
CCATTCTGTCTCGCCCTAAA+TGG | + | chr6_2:9929407-9929426 | None:intergenic | 50.0% | |
! | CCATTTAGGGCGAGACAGAA+TGG | - | chr6_2:9929404-9929423 | Msa0908820:intron | 50.0% |
GTAGTCGTCGTCTGACCAAT+TGG | + | chr6_2:9929457-9929476 | None:intergenic | 50.0% | |
GGGGAAGTTTAGGAGAGATG+GGG | + | chr6_2:9929637-9929656 | None:intergenic | 50.0% | |
GGGGGAAGTTTAGGAGAGAT+GGG | + | chr6_2:9929638-9929657 | None:intergenic | 50.0% | |
CATCTCTCCTAAACTTCCCC+CGG | - | chr6_2:9929637-9929656 | Msa0908820:CDS | 50.0% | |
GTTTCTGCCTCATACAGCTC+GGG | + | chr6_2:9929670-9929689 | None:intergenic | 50.0% | |
TAAGCCGCACCATTACTGCT+GGG | + | chr6_2:9929727-9929746 | None:intergenic | 50.0% | |
TGGGTTCCGAACTCCATATG+GGG | - | chr6_2:9929792-9929811 | Msa0908820:CDS | 50.0% | |
TTCCGAACTCCATATGGGGA+AGG | - | chr6_2:9929796-9929815 | Msa0908820:CDS | 50.0% | |
CTCCTTCCCCATATGGAGTT+CGG | + | chr6_2:9929801-9929820 | None:intergenic | 50.0% | |
AACAACGCTCCTTCCCCATA+TGG | + | chr6_2:9929808-9929827 | None:intergenic | 50.0% | |
!! | AAGGAGCGTTGTTGTTTCCG+AGG | - | chr6_2:9929815-9929834 | Msa0908820:CDS | 50.0% |
CATGAGGCGATCGTTCGTTA+GGG | + | chr6_2:9929906-9929925 | None:intergenic | 50.0% | |
ACATGAGGCGATCGTTCGTT+AGG | + | chr6_2:9929907-9929926 | None:intergenic | 50.0% | |
AACAACGAGCACGACTGAAG+TGG | - | chr6_2:9930087-9930106 | Msa0908820:intron | 50.0% | |
GGAACTGGAAGTTCCAGAAC+AGG | - | chr6_2:9930151-9930170 | Msa0908820:CDS | 50.0% | |
ACTGGAAGTTCCAGAACAGG+CGG | - | chr6_2:9930154-9930173 | Msa0908820:CDS | 50.0% | |
!! | TTTATGTTGGCTTCGTCGGG+AGG | - | chr6_2:9930229-9930248 | Msa0908820:CDS | 50.0% |
GATCGGACTAAGGAGAGAGA+CGG | - | chr6_2:9930378-9930397 | Msa0908820:CDS | 50.0% | |
AGGAGAGAGACGGTTGAGTA+CGG | - | chr6_2:9930388-9930407 | Msa0908820:CDS | 50.0% | |
GTTGAGTACGGAAGCGAAAG+CGG | - | chr6_2:9930400-9930419 | Msa0908820:CDS | 50.0% | |
GGAAGCGAAAGCGGAGATAT+AGG | - | chr6_2:9930409-9930428 | Msa0908820:CDS | 50.0% | |
CGTGCAAGCAAAGACGTTAG+AGG | + | chr6_2:9930567-9930586 | None:intergenic | 50.0% | |
CTGTGTGGAAAGATGCAACG+AGG | + | chr6_2:9930617-9930636 | None:intergenic | 50.0% | |
CGGGCGATAAAGGTAAGGTA+AGG | + | chr6_2:9930653-9930672 | None:intergenic | 50.0% | |
ACCTTACCTTTATCGCCCGT+CGG | - | chr6_2:9930654-9930673 | Msa0908820:CDS | 50.0% | |
!! | CCTTGCTCTGGGCTTTTTGT+TGG | + | chr6_2:9930725-9930744 | None:intergenic | 50.0% |
CCAACAAAAAGCCCAGAGCA+AGG | - | chr6_2:9930722-9930741 | Msa0908820:CDS | 50.0% | |
ACAAAAAGCCCAGAGCAAGG+GGG | - | chr6_2:9930725-9930744 | Msa0908820:CDS | 50.0% | |
GGGGGGAAAGAATGCAATTC+CGG | - | chr6_2:9930752-9930771 | Msa0908820:CDS | 50.0% | |
! | TTTTGGTGGGGCTGAGATTC+CGG | + | chr6_2:9930774-9930793 | None:intergenic | 50.0% |
!!! | GCGATTGGCATTGGTTTTGG+TGG | + | chr6_2:9930788-9930807 | None:intergenic | 50.0% |
GCCAATCGCTGATCTGTTAG+TGG | - | chr6_2:9930799-9930818 | Msa0908820:CDS | 50.0% | |
! | CTGTTAGTGGACAGAGCTTC+TGG | - | chr6_2:9930812-9930831 | Msa0908820:CDS | 50.0% |
AAAACAGCGTTCCGTTGTCC+GGG | - | chr6_2:9930908-9930927 | Msa0908820:intron | 50.0% | |
AGATGAGGTTCATTGCTCGC+TGG | + | chr6_2:9931005-9931024 | None:intergenic | 50.0% | |
AGTGTTTGAGCGCGAGAACA+CGG | - | chr6_2:9931118-9931137 | Msa0908820:CDS | 50.0% | |
TTGCTGTCCATCTGTGTGAG+AGG | + | chr6_2:9931270-9931289 | None:intergenic | 50.0% | |
! | GCAAAGAAGGCCTTCTAAGG+CGG | - | chr6_2:9931286-9931305 | Msa0908820:intron | 50.0% |
CCGATGAAGGAGAAACTTGC+TGG | - | chr6_2:9931356-9931375 | Msa0908820:CDS | 50.0% | |
ACAAGAGGGAAGAACCCCTA+GGG | - | chr6_2:9931388-9931407 | Msa0908820:CDS | 50.0% | |
!! | CTGTAACGGATTCACCCTAG+GGG | + | chr6_2:9931405-9931424 | None:intergenic | 50.0% |
GGGTGAATCCGTTACAGTTG+CGG | - | chr6_2:9931408-9931427 | Msa0908820:CDS | 50.0% | |
CTCTCAGTGTGGTCAGCACT+GGG | + | chr6_2:9929027-9929046 | None:intergenic | 55.0% | |
TCTCTCAGTGTGGTCAGCAC+TGG | + | chr6_2:9929028-9929047 | None:intergenic | 55.0% | |
CGCTTTCGTCTCTCTCAGTG+TGG | + | chr6_2:9929038-9929057 | None:intergenic | 55.0% | |
! | ACTGAGAGAGACGAAAGCGC+AGG | - | chr6_2:9929039-9929058 | Msa0908820:CDS | 55.0% |
GGTAATGCCAGTTGGCGAAG+TGG | - | chr6_2:9929060-9929079 | Msa0908820:CDS | 55.0% | |
CTTAACGCCACTTCGCCAAC+TGG | + | chr6_2:9929070-9929089 | None:intergenic | 55.0% | |
GTGGCGTTAAGCATCCCTAG+CGG | - | chr6_2:9929079-9929098 | Msa0908820:CDS | 55.0% | |
CCCTAGCGGTACGAAAAGAG+AGG | - | chr6_2:9929093-9929112 | Msa0908820:CDS | 55.0% | |
CCGTTCCCTGGTCAAAGACT+TGG | + | chr6_2:9929176-9929195 | None:intergenic | 55.0% | |
GTGGGAATTATCCCGTTCCC+TGG | + | chr6_2:9929188-9929207 | None:intergenic | 55.0% | |
GGGATAATTCCCACTACCGC+TGG | - | chr6_2:9929194-9929213 | Msa0908820:CDS | 55.0% | |
CCTTCATTCTATGCCGACCC+CGG | + | chr6_2:9929278-9929297 | None:intergenic | 55.0% | |
CGGGGTCGGCATAGAATGAA+GGG | - | chr6_2:9929276-9929295 | Msa0908820:intron | 55.0% | |
GGGGTCGGCATAGAATGAAG+GGG | - | chr6_2:9929277-9929296 | Msa0908820:intron | 55.0% | |
TTAGGGCGAGACAGAATGGG+CGG | - | chr6_2:9929408-9929427 | Msa0908820:intron | 55.0% | |
CGTCGTCTGACCAATTGGCT+CGG | + | chr6_2:9929452-9929471 | None:intergenic | 55.0% | |
CGGGGGAAGTTTAGGAGAGA+TGG | + | chr6_2:9929639-9929658 | None:intergenic | 55.0% | |
CCTAAACTTCCCCCGGTCTT+CGG | - | chr6_2:9929644-9929663 | Msa0908820:CDS | 55.0% | |
AAGCCGCACCATTACTGCTG+GGG | + | chr6_2:9929726-9929745 | None:intergenic | 55.0% | |
CTAAGCCGCACCATTACTGC+TGG | + | chr6_2:9929728-9929747 | None:intergenic | 55.0% | |
CAGCAGTAATGGTGCGGCTT+AGG | - | chr6_2:9929726-9929745 | Msa0908820:CDS | 55.0% | |
AGGCGATCGTTCGTTAGGGA+CGG | + | chr6_2:9929902-9929921 | None:intergenic | 55.0% | |
TTGCTTGCACGGCTTTCGAC+CGG | - | chr6_2:9930576-9930595 | Msa0908820:CDS | 55.0% | |
GGGACAGAACCAATGCTGTG+TGG | + | chr6_2:9930632-9930651 | None:intergenic | 55.0% | |
CCTTACCTTTATCGCCCGTC+GGG | - | chr6_2:9930655-9930674 | Msa0908820:CDS | 55.0% | |
CAAAAAGCCCAGAGCAAGGG+GGG | - | chr6_2:9930726-9930745 | Msa0908820:CDS | 55.0% | |
GAGGTTCATTGCTCGCTGGT+AGG | + | chr6_2:9931001-9931020 | None:intergenic | 55.0% | |
ATCGGACAATCTCGTGCCTG+AGG | + | chr6_2:9931341-9931360 | None:intergenic | 55.0% | |
GGCACGAGATTGTCCGATGA+AGG | - | chr6_2:9931343-9931362 | Msa0908820:CDS | 55.0% | |
!! | GAGAAACTTGCTGGTTGCCG+AGG | - | chr6_2:9931365-9931384 | Msa0908820:CDS | 55.0% |
GGGTTCTTCCCTCTTGTCCT+CGG | + | chr6_2:9931385-9931404 | None:intergenic | 55.0% | |
GACAAGAGGGAAGAACCCCT+AGG | - | chr6_2:9931387-9931406 | Msa0908820:CDS | 55.0% | |
TGGGTGTAAGCCTCGCTGCT+CGG | - | chr6_2:9928996-9929015 | Msa0908820:CDS | 60.0% | |
GCTTCCCAAAAAGCCAGCCC+CGG | - | chr6_2:9929251-9929270 | Msa0908820:intron | 60.0% | |
CTTCCCAAAAAGCCAGCCCC+GGG | - | chr6_2:9929252-9929271 | Msa0908820:intron | 60.0% | |
CCGGGGTCGGCATAGAATGA+AGG | - | chr6_2:9929275-9929294 | Msa0908820:intron | 60.0% | |
! | CCAACTTCTTGGGTTGCGGG+CGG | - | chr6_2:9929326-9929345 | Msa0908820:intron | 60.0% |
CTCTTAGTTACGCTGCGCCC+CGG | + | chr6_2:9929377-9929396 | None:intergenic | 60.0% | |
TAGGGCGAGACAGAATGGGC+GGG | - | chr6_2:9929409-9929428 | Msa0908820:intron | 60.0% | |
GGTCTGGTGTCCGAGCCAAT+TGG | - | chr6_2:9929439-9929458 | Msa0908820:intron | 60.0% | |
CCGAAGACCGGGGGAAGTTT+AGG | + | chr6_2:9929647-9929666 | None:intergenic | 60.0% | |
ATACAGCTCGGGCCGAAGAC+CGG | + | chr6_2:9929659-9929678 | None:intergenic | 60.0% | |
TCTTCGGCCCGAGCTGTATG+AGG | - | chr6_2:9929660-9929679 | Msa0908820:CDS | 60.0% | |
GCAGAAACTCGCCCCACGTA+CGG | - | chr6_2:9929682-9929701 | Msa0908820:CDS | 60.0% | |
AACTCGCCCCACGTACGGTT+CGG | - | chr6_2:9929687-9929706 | Msa0908820:CDS | 60.0% | |
ATTACTGCTGGGGTGGGGCT+CGG | + | chr6_2:9929716-9929735 | None:intergenic | 60.0% | |
GCACCATTACTGCTGGGGTG+GGG | + | chr6_2:9929721-9929740 | None:intergenic | 60.0% | |
CGCACCATTACTGCTGGGGT+GGG | + | chr6_2:9929722-9929741 | None:intergenic | 60.0% | |
CCACCCCAGCAGTAATGGTG+CGG | - | chr6_2:9929720-9929739 | Msa0908820:CDS | 60.0% | |
GAAGTTCCAGAACAGGCGGC+TGG | - | chr6_2:9930158-9930177 | Msa0908820:CDS | 60.0% | |
GGTATACCAGCCGCCTGTTC+TGG | + | chr6_2:9930167-9930186 | None:intergenic | 60.0% | |
TGCTTGCACGGCTTTCGACC+GGG | - | chr6_2:9930577-9930596 | Msa0908820:CDS | 60.0% | |
GAGGAAACCTCTTCCCGTCC+CGG | + | chr6_2:9930598-9930617 | None:intergenic | 60.0% | |
CCCGACGGGCGATAAAGGTA+AGG | + | chr6_2:9930658-9930677 | None:intergenic | 60.0% | |
ATGCGAACCTTGACGCCCGA+CGG | + | chr6_2:9930673-9930692 | None:intergenic | 60.0% | |
! | TTCCGTTGTCCGGGTGCTGT+TGG | - | chr6_2:9930917-9930936 | Msa0908820:intron | 60.0% |
GTCCAACAGCACCCGGACAA+CGG | + | chr6_2:9930922-9930941 | None:intergenic | 60.0% | |
!! | GTTGTCCGGGTGCTGTTGGA+CGG | - | chr6_2:9930921-9930940 | Msa0908820:intron | 60.0% |
!! | GGACGGACGGACTATTCTGC+TGG | - | chr6_2:9930938-9930957 | Msa0908820:intron | 60.0% |
!! | GGACGGACTATTCTGCTGGC+AGG | - | chr6_2:9930942-9930961 | Msa0908820:intron | 60.0% |
TGCTGGCAGGTGATGCCCTT+CGG | - | chr6_2:9930955-9930974 | Msa0908820:intron | 60.0% | |
!! | AGGCCTTCTAAGGCGGACTC+TGG | - | chr6_2:9931293-9931312 | Msa0908820:intron | 60.0% |
GAGCCAGAGTCCGCCTTAGA+AGG | + | chr6_2:9931299-9931318 | None:intergenic | 60.0% | |
GGACAATCTCGTGCCTGAGG+AGG | + | chr6_2:9931338-9931357 | None:intergenic | 60.0% | |
! | TGCTGGTTGCCGAGGACAAG+AGG | - | chr6_2:9931373-9931392 | Msa0908820:CDS | 60.0% |
GCTGGTTGCCGAGGACAAGA+GGG | - | chr6_2:9931374-9931393 | Msa0908820:CDS | 60.0% | |
CTGGGTGTTTCCGAGCAGCG+AGG | + | chr6_2:9929009-9929028 | None:intergenic | 65.0% | |
TACGTCCGTACCGCTCCTCG+CGG | - | chr6_2:9929132-9929151 | Msa0908820:CDS | 65.0% | |
CTACTCCGCGAGGAGCGGTA+CGG | + | chr6_2:9929140-9929159 | None:intergenic | 65.0% | |
GGGATCTACTCCGCGAGGAG+CGG | + | chr6_2:9929145-9929164 | None:intergenic | 65.0% | |
GATGCGGGATCTACTCCGCG+AGG | + | chr6_2:9929150-9929169 | None:intergenic | 65.0% | |
!! | GCTGGCCTTCCAGCGGTAGT+GGG | + | chr6_2:9929206-9929225 | None:intergenic | 65.0% |
ACTACCGCTGGAAGGCCAGC+CGG | - | chr6_2:9929206-9929225 | Msa0908820:intron | 65.0% | |
ATTCTATGCCGACCCCGGCC+CGG | + | chr6_2:9929273-9929292 | None:intergenic | 65.0% | |
CCGCCCGCAACCCAAGAAGT+TGG | + | chr6_2:9929329-9929348 | None:intergenic | 65.0% | |
ACAGAATGGGCGGGCACGAG+CGG | - | chr6_2:9929418-9929437 | Msa0908820:intron | 65.0% | |
AAGCTTATCCCCGCCCCGAC+CGG | - | chr6_2:9929597-9929616 | Msa0908820:CDS | 65.0% | |
TACAGCTCGGGCCGAAGACC+GGG | + | chr6_2:9929658-9929677 | None:intergenic | 65.0% | |
TCGGCCTCCGAACCGTACGT+GGG | + | chr6_2:9929697-9929716 | None:intergenic | 65.0% | |
GAGCCCCACCCCAGCAGTAA+TGG | - | chr6_2:9929715-9929734 | Msa0908820:CDS | 65.0% | |
CCGCACCATTACTGCTGGGG+TGG | + | chr6_2:9929723-9929742 | None:intergenic | 65.0% | |
TGCACGGCTTTCGACCGGGA+CGG | - | chr6_2:9930581-9930600 | Msa0908820:CDS | 65.0% | |
CTTTCGACCGGGACGGGAAG+AGG | - | chr6_2:9930588-9930607 | Msa0908820:intron | 65.0% | |
TGACGCCCGACGGGCGATAA+AGG | + | chr6_2:9930663-9930682 | None:intergenic | 65.0% | |
TTATCGCCCGTCGGGCGTCA+AGG | - | chr6_2:9930663-9930682 | Msa0908820:CDS | 65.0% | |
TGCGAACCTTGACGCCCGAC+GGG | + | chr6_2:9930672-9930691 | None:intergenic | 65.0% | |
!! | TCCGGGTGCTGTTGGACGGA+CGG | - | chr6_2:9930925-9930944 | Msa0908820:intron | 65.0% |
TCCGTCCGTCCAACAGCACC+CGG | + | chr6_2:9930929-9930948 | None:intergenic | 65.0% | |
!! | GGCTGGCCTTCCAGCGGTAG+TGG | + | chr6_2:9929207-9929226 | None:intergenic | 70.0% |
CTACCGCTGGAAGGCCAGCC+GGG | - | chr6_2:9929207-9929226 | Msa0908820:intron | 70.0% | |
!!! | CGGCCCGGGGCTGGCTTTTT+GGG | + | chr6_2:9929258-9929277 | None:intergenic | 70.0% |
CCAAAAAGCCAGCCCCGGGC+CGG | - | chr6_2:9929256-9929275 | Msa0908820:intron | 70.0% | |
CAAAAAGCCAGCCCCGGGCC+GGG | - | chr6_2:9929257-9929276 | Msa0908820:intron | 70.0% | |
AAAAAGCCAGCCCCGGGCCG+GGG | - | chr6_2:9929258-9929277 | Msa0908820:intron | 70.0% | |
TTCTATGCCGACCCCGGCCC+GGG | + | chr6_2:9929272-9929291 | None:intergenic | 70.0% | |
GGGTTGCGGGCGGAGAAGAG+CGG | - | chr6_2:9929336-9929355 | Msa0908820:intron | 70.0% | |
GGGCGGAGAAGAGCGGACGT+GGG | - | chr6_2:9929343-9929362 | Msa0908820:intron | 70.0% | |
GGCGGAGAAGAGCGGACGTG+GGG | - | chr6_2:9929344-9929363 | Msa0908820:intron | 70.0% | |
GCGGACGTGGGGACTCAGAC+CGG | - | chr6_2:9929355-9929374 | Msa0908820:intron | 70.0% | |
CGGACGTGGGGACTCAGACC+GGG | - | chr6_2:9929356-9929375 | Msa0908820:intron | 70.0% | |
GGACGTGGGGACTCAGACCG+GGG | - | chr6_2:9929357-9929376 | Msa0908820:intron | 70.0% | |
AGACCCAGCAGCTGCCGGTC+GGG | + | chr6_2:9929614-9929633 | None:intergenic | 70.0% | |
GAGACCCAGCAGCTGCCGGT+CGG | + | chr6_2:9929615-9929634 | None:intergenic | 70.0% | |
TGGGGAGACCCAGCAGCTGC+CGG | + | chr6_2:9929619-9929638 | None:intergenic | 70.0% | |
ACAGCTCGGGCCGAAGACCG+GGG | + | chr6_2:9929657-9929676 | None:intergenic | 70.0% | |
! | TCGCCCCACGTACGGTTCGG+AGG | - | chr6_2:9929690-9929709 | Msa0908820:CDS | 70.0% |
CGGCCTCCGAACCGTACGTG+GGG | + | chr6_2:9929696-9929715 | None:intergenic | 70.0% | |
CTCGGCCTCCGAACCGTACG+TGG | + | chr6_2:9929698-9929717 | None:intergenic | 70.0% | |
GCACGGCTTTCGACCGGGAC+GGG | - | chr6_2:9930582-9930601 | Msa0908820:intron | 70.0% | |
AAGCCCAGAGCAAGGGGGGC+TGG | - | chr6_2:9930730-9930749 | Msa0908820:CDS | 70.0% | |
AGCCCAGAGCAAGGGGGGCT+GGG | - | chr6_2:9930731-9930750 | Msa0908820:CDS | 70.0% | |
TTCCCACCGCGCTCACGGCC+CGG | + | chr6_2:9929228-9929247 | None:intergenic | 75.0% | |
GGCCGTGAGCGCGGTGGGAA+CGG | - | chr6_2:9929228-9929247 | Msa0908820:intron | 75.0% | |
GCCGTGAGCGCGGTGGGAAC+GGG | - | chr6_2:9929229-9929248 | Msa0908820:intron | 75.0% | |
GCCCGTTCCCACCGCGCTCA+CGG | + | chr6_2:9929233-9929252 | None:intergenic | 75.0% | |
!!! | CCGGCCCGGGGCTGGCTTTT+TGG | + | chr6_2:9929259-9929278 | None:intergenic | 75.0% |
TCTATGCCGACCCCGGCCCG+GGG | + | chr6_2:9929271-9929290 | None:intergenic | 75.0% | |
CGGGCGGAGAAGAGCGGACG+TGG | - | chr6_2:9929342-9929361 | Msa0908820:intron | 75.0% | |
ATGGGCGGGCACGAGCGGTC+TGG | - | chr6_2:9929423-9929442 | Msa0908820:intron | 75.0% | |
GACCCAGCAGCTGCCGGTCG+GGG | + | chr6_2:9929613-9929632 | None:intergenic | 75.0% | |
CAGCTCGGGCCGAAGACCGG+GGG | + | chr6_2:9929656-9929675 | None:intergenic | 75.0% | |
GCCCAGAGCAAGGGGGGCTG+GGG | - | chr6_2:9930732-9930751 | Msa0908820:CDS | 75.0% | |
CCCCCAGCCCCCCTTGCTCT+GGG | + | chr6_2:9930736-9930755 | None:intergenic | 75.0% | |
CCCAGAGCAAGGGGGGCTGG+GGG | - | chr6_2:9930733-9930752 | Msa0908820:CDS | 75.0% | |
CCAGAGCAAGGGGGGCTGGG+GGG | - | chr6_2:9930734-9930753 | Msa0908820:CDS | 75.0% | |
CAGAGCAAGGGGGGCTGGGG+GGG | - | chr6_2:9930735-9930754 | Msa0908820:CDS | 75.0% | |
!!! | CGGCCCGGCTGGCCTTCCAG+CGG | + | chr6_2:9929213-9929232 | None:intergenic | 80.0% |
! | AGCCGGGCCGTGAGCGCGGT+GGG | - | chr6_2:9929223-9929242 | Msa0908820:intron | 80.0% |
! | AGCAGCTGCCGGTCGGGGCG+GGG | + | chr6_2:9929608-9929627 | None:intergenic | 80.0% |
! | CAGCAGCTGCCGGTCGGGGC+GGG | + | chr6_2:9929609-9929628 | None:intergenic | 80.0% |
! | CCAGCAGCTGCCGGTCGGGG+CGG | + | chr6_2:9929610-9929629 | None:intergenic | 80.0% |
! | CGCCCCGACCGGCAGCTGCT+GGG | - | chr6_2:9929608-9929627 | Msa0908820:CDS | 80.0% |
! | CCCCCCAGCCCCCCTTGCTC+TGG | + | chr6_2:9930737-9930756 | None:intergenic | 80.0% |
! | GGCCAGCCGGGCCGTGAGCG+CGG | - | chr6_2:9929219-9929238 | Msa0908820:intron | 85.0% |
! | CACCGCGCTCACGGCCCGGC+TGG | + | chr6_2:9929224-9929243 | None:intergenic | 85.0% |
! | CAGCCGGGCCGTGAGCGCGG+TGG | - | chr6_2:9929222-9929241 | Msa0908820:intron | 85.0% |
! | AGCCAGCCCCGGGCCGGGGT+CGG | - | chr6_2:9929262-9929281 | Msa0908820:intron | 85.0% |
! | CCGCCCCGACCGGCAGCTGC+TGG | - | chr6_2:9929607-9929626 | Msa0908820:CDS | 85.0% |
! | TGCCGACCCCGGCCCGGGGC+TGG | + | chr6_2:9929267-9929286 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 9928989 | 9931448 | 9928989 | ID=Msa0908820;Name=Msa0908820 |
chr6_2 | mRNA | 9928989 | 9931448 | 9928989 | ID=Msa0908820-mRNA-1;Parent=Msa0908820;Name=Msa0908820-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0.12|8|0|487 |
chr6_2 | exon | 9931337 | 9931448 | 9931337 | ID=Msa0908820-mRNA-1:exon:2476;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9931077 | 9931217 | 9931077 | ID=Msa0908820-mRNA-1:exon:2475;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9930616 | 9930837 | 9930616 | ID=Msa0908820-mRNA-1:exon:2474;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9930378 | 9930600 | 9930378 | ID=Msa0908820-mRNA-1:exon:2473;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9930130 | 9930362 | 9930130 | ID=Msa0908820-mRNA-1:exon:2472;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9929759 | 9929876 | 9929759 | ID=Msa0908820-mRNA-1:exon:2471;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9929567 | 9929752 | 9929567 | ID=Msa0908820-mRNA-1:exon:2470;Parent=Msa0908820-mRNA-1 |
chr6_2 | exon | 9928989 | 9929217 | 9928989 | ID=Msa0908820-mRNA-1:exon:2469;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9931337 | 9931448 | 9931337 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9931077 | 9931217 | 9931077 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9930616 | 9930837 | 9930616 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9930378 | 9930600 | 9930378 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9930130 | 9930362 | 9930130 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9929759 | 9929876 | 9929759 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9929567 | 9929752 | 9929567 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
chr6_2 | CDS | 9928989 | 9929217 | 9928989 | ID=Msa0908820-mRNA-1:cds;Parent=Msa0908820-mRNA-1 |
Gene Sequence |
Protein sequence |