Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988420 | XP_013452170.2 | 84.857 | 350 | 27 | 3 | 1 | 338 | 1 | 336 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988420 | sp|Q9T072|BH025_ARATH | 41.772 | 237 | 114 | 6 | 105 | 336 | 111 | 328 | 2.35e-43 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988420 | A0A072UAR9 | 84.857 | 350 | 27 | 3 | 1 | 338 | 1 | 336 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0988420 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094060 | Msa0988420 | 0.806338 | 8.634528e-50 | -8.615850e-47 |
| Msa0204000 | Msa0988420 | 0.805181 | 1.511217e-49 | -8.615850e-47 |
| Msa0207530 | Msa0988420 | 0.824948 | 6.121196e-54 | -8.615850e-47 |
| Msa0207900 | Msa0988420 | 0.832342 | 9.987587e-56 | -8.615850e-47 |
| Msa0208400 | Msa0988420 | 0.810862 | 9.333406e-51 | -8.615850e-47 |
| Msa0208560 | Msa0988420 | 0.811082 | 8.362847e-51 | -8.615850e-47 |
| Msa0392410 | Msa0988420 | 0.812617 | 3.875159e-51 | -8.615850e-47 |
| Msa0988420 | Msa1173020 | 0.818385 | 2.014803e-52 | -8.615850e-47 |
| Msa0988420 | Msa1261340 | 0.811612 | 6.417791e-51 | -8.615850e-47 |
| Msa0988420 | Msa1261360 | 0.801330 | 9.476106e-49 | -8.615850e-47 |
| Msa0988420 | Msa1261370 | 0.817001 | 4.134086e-52 | -8.615850e-47 |
| Msa0988420 | Msa1261400 | 0.810258 | 1.260614e-50 | -8.615850e-47 |
| Msa0988420 | Msa1439160 | 0.815466 | 9.111485e-52 | -8.615850e-47 |
| Msa0265780 | Msa0988420 | 0.805462 | 1.319768e-49 | -8.615850e-47 |
| Msa0285710 | Msa0988420 | 0.803056 | 4.183127e-49 | -8.615850e-47 |
| Msa0951630 | Msa0988420 | 0.825708 | 4.046043e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988420 | MtrunA17_Chr6g0468491 | 83.841 | 328 | 27 | 3 | 23 | 338 | 1 | 314 | 0.0 | 536 |
| Msa0988420 | MtrunA17_Chr6g0468461 | 78.659 | 328 | 38 | 6 | 1 | 313 | 1 | 311 | 2.47e-168 | 472 |
| Msa0988420 | MtrunA17_Chr2g0307131 | 68.611 | 360 | 85 | 3 | 1 | 337 | 1 | 355 | 2.25e-162 | 457 |
| Msa0988420 | MtrunA17_Chr2g0307141 | 66.027 | 365 | 92 | 5 | 1 | 338 | 1 | 360 | 2.80e-151 | 429 |
| Msa0988420 | MtrunA17_Chr4g0033391 | 62.428 | 346 | 93 | 7 | 1 | 336 | 1 | 319 | 6.49e-135 | 387 |
| Msa0988420 | MtrunA17_Chr4g0033281 | 64.306 | 353 | 82 | 8 | 1 | 337 | 1 | 325 | 7.71e-134 | 384 |
| Msa0988420 | MtrunA17_Chr4g0033291 | 60.598 | 368 | 76 | 7 | 1 | 338 | 1 | 329 | 3.18e-132 | 380 |
| Msa0988420 | MtrunA17_Chr4g0054581 | 56.701 | 388 | 109 | 7 | 1 | 338 | 1 | 379 | 3.77e-122 | 356 |
| Msa0988420 | MtrunA17_Chr4g0054621 | 53.955 | 354 | 135 | 11 | 1 | 338 | 1 | 342 | 3.05e-110 | 324 |
| Msa0988420 | MtrunA17_Chr7g0225901 | 61.017 | 295 | 56 | 5 | 23 | 313 | 1 | 240 | 7.13e-110 | 320 |
| Msa0988420 | MtrunA17_Chr5g0400621 | 42.683 | 328 | 167 | 9 | 17 | 337 | 20 | 333 | 6.60e-62 | 200 |
| Msa0988420 | MtrunA17_Chr5g0400661 | 35.655 | 359 | 172 | 11 | 8 | 333 | 2 | 334 | 7.52e-52 | 174 |
| Msa0988420 | MtrunA17_Chr4g0002801 | 39.916 | 238 | 129 | 4 | 111 | 334 | 94 | 331 | 3.59e-48 | 165 |
| Msa0988420 | MtrunA17_Chr5g0400641 | 53.750 | 160 | 66 | 3 | 164 | 319 | 1 | 156 | 2.03e-46 | 155 |
| Msa0988420 | MtrunA17_Chr2g0280161 | 43.367 | 196 | 104 | 4 | 145 | 336 | 161 | 353 | 4.81e-45 | 157 |
| Msa0988420 | MtrunA17_Chr4g0049331 | 44.949 | 198 | 106 | 3 | 140 | 336 | 115 | 310 | 4.46e-44 | 153 |
| Msa0988420 | MtrunA17_Chr4g0054571 | 34.706 | 340 | 178 | 10 | 7 | 335 | 25 | 331 | 7.79e-43 | 150 |
| Msa0988420 | MtrunA17_Chr2g0333641 | 42.079 | 202 | 108 | 4 | 133 | 328 | 104 | 302 | 1.43e-42 | 149 |
| Msa0988420 | MtrunA17_Chr4g0002781 | 36.364 | 242 | 136 | 4 | 111 | 334 | 109 | 350 | 6.34e-41 | 146 |
| Msa0988420 | MtrunA17_Chr2g0333621 | 40.351 | 228 | 117 | 7 | 126 | 337 | 91 | 315 | 1.39e-40 | 144 |
| Msa0988420 | MtrunA17_Chr4g0054551 | 43.275 | 171 | 93 | 2 | 159 | 328 | 153 | 320 | 3.86e-40 | 144 |
| Msa0988420 | MtrunA17_Chr4g0054561 | 43.860 | 171 | 92 | 3 | 159 | 328 | 153 | 320 | 2.32e-39 | 141 |
| Msa0988420 | MtrunA17_Chr8g0336681 | 36.709 | 237 | 125 | 6 | 116 | 329 | 97 | 331 | 6.24e-37 | 135 |
| Msa0988420 | MtrunA17_Chr5g0400671 | 40.449 | 178 | 103 | 2 | 156 | 333 | 149 | 323 | 8.43e-36 | 132 |
| Msa0988420 | MtrunA17_Chr7g0249811 | 39.583 | 192 | 106 | 3 | 138 | 329 | 143 | 324 | 6.18e-35 | 130 |
| Msa0988420 | MtrunA17_Chr2g0333541 | 40.271 | 221 | 109 | 6 | 124 | 332 | 58 | 267 | 2.45e-33 | 124 |
| Msa0988420 | MtrunA17_Chr2g0333611 | 37.696 | 191 | 110 | 4 | 149 | 335 | 32 | 217 | 5.67e-33 | 122 |
| Msa0988420 | MtrunA17_Chr4g0002831 | 36.905 | 168 | 80 | 6 | 172 | 331 | 53 | 202 | 8.41e-25 | 99.8 |
| Msa0988420 | MtrunA17_Chr7g0233441 | 34.839 | 155 | 77 | 4 | 184 | 331 | 57 | 194 | 8.81e-22 | 91.3 |
| Msa0988420 | MtrunA17_Chr4g0002851 | 35.135 | 148 | 78 | 3 | 184 | 331 | 65 | 194 | 1.35e-21 | 90.9 |
| Msa0988420 | MtrunA17_Chr1g0185621 | 28.251 | 223 | 139 | 6 | 124 | 328 | 434 | 653 | 3.23e-17 | 82.8 |
| Msa0988420 | MtrunA17_Chr8g0366751 | 33.708 | 178 | 94 | 6 | 140 | 297 | 436 | 609 | 2.24e-16 | 80.1 |
| Msa0988420 | MtrunA17_Chr8g0346161 | 28.834 | 163 | 97 | 5 | 147 | 298 | 277 | 431 | 4.92e-15 | 75.9 |
| Msa0988420 | MtrunA17_Chr8g0365711 | 27.723 | 202 | 133 | 6 | 117 | 310 | 202 | 398 | 1.69e-14 | 73.9 |
| Msa0988420 | MtrunA17_Chr5g0411341 | 28.571 | 175 | 109 | 3 | 139 | 297 | 466 | 640 | 1.97e-14 | 74.3 |
| Msa0988420 | MtrunA17_Chr7g0275821 | 30.519 | 154 | 99 | 4 | 161 | 314 | 252 | 397 | 3.78e-13 | 70.1 |
| Msa0988420 | MtrunA17_Chr3g0131691 | 28.977 | 176 | 108 | 4 | 162 | 324 | 299 | 470 | 3.87e-13 | 70.1 |
| Msa0988420 | MtrunA17_Chr8g0346151 | 31.544 | 149 | 80 | 5 | 137 | 270 | 251 | 392 | 9.08e-13 | 68.9 |
| Msa0988420 | MtrunA17_Chr8g0386921 | 43.056 | 72 | 41 | 0 | 153 | 224 | 398 | 469 | 1.29e-12 | 68.6 |
| Msa0988420 | MtrunA17_Chr7g0260841 | 36.893 | 103 | 56 | 3 | 117 | 214 | 310 | 408 | 1.90e-11 | 65.1 |
| Msa0988420 | MtrunA17_Chr1g0211081 | 29.255 | 188 | 102 | 7 | 140 | 297 | 295 | 481 | 2.27e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988420 | AT4G37850.2 | 41.772 | 237 | 114 | 6 | 105 | 336 | 111 | 328 | 2.39e-44 | 155 |
| Msa0988420 | AT4G37850.1 | 41.772 | 237 | 114 | 6 | 105 | 336 | 111 | 328 | 2.39e-44 | 155 |
| Msa0988420 | AT2G22760.1 | 41.624 | 197 | 98 | 6 | 151 | 333 | 102 | 295 | 4.65e-38 | 137 |
| Msa0988420 | AT2G22750.2 | 43.367 | 196 | 103 | 3 | 146 | 335 | 111 | 304 | 2.10e-35 | 131 |
| Msa0988420 | AT2G22750.5 | 43.367 | 196 | 103 | 3 | 146 | 335 | 135 | 328 | 2.13e-35 | 131 |
| Msa0988420 | AT2G22750.3 | 33.333 | 354 | 187 | 11 | 7 | 335 | 3 | 332 | 2.38e-35 | 131 |
| Msa0988420 | AT2G22750.1 | 43.367 | 196 | 102 | 4 | 146 | 335 | 111 | 303 | 3.11e-34 | 127 |
| Msa0988420 | AT2G22750.4 | 33.333 | 354 | 186 | 12 | 7 | 335 | 3 | 331 | 3.77e-34 | 128 |
| Msa0988420 | AT2G22770.1 | 34.310 | 239 | 132 | 5 | 110 | 331 | 87 | 317 | 7.33e-33 | 124 |
| Msa0988420 | AT2G22760.2 | 40.909 | 176 | 88 | 5 | 151 | 313 | 102 | 274 | 2.32e-31 | 119 |
| Msa0988420 | AT4G17880.1 | 32.075 | 159 | 97 | 3 | 161 | 314 | 416 | 568 | 1.55e-16 | 80.9 |
| Msa0988420 | AT5G46760.1 | 29.834 | 181 | 100 | 7 | 161 | 317 | 415 | 592 | 3.78e-16 | 79.7 |
| Msa0988420 | AT1G32640.1 | 30.380 | 158 | 101 | 3 | 147 | 297 | 434 | 589 | 8.85e-15 | 75.9 |
| Msa0988420 | AT1G63650.3 | 30.714 | 140 | 79 | 3 | 161 | 282 | 405 | 544 | 8.50e-14 | 72.8 |
| Msa0988420 | AT1G63650.1 | 30.714 | 140 | 79 | 3 | 161 | 282 | 405 | 544 | 8.50e-14 | 72.8 |
| Msa0988420 | AT1G63650.2 | 30.714 | 140 | 79 | 3 | 161 | 282 | 405 | 544 | 8.50e-14 | 72.8 |
| Msa0988420 | AT1G01260.1 | 32.759 | 116 | 75 | 1 | 140 | 255 | 412 | 524 | 5.80e-13 | 70.1 |
| Msa0988420 | AT1G01260.2 | 32.759 | 116 | 75 | 1 | 140 | 255 | 412 | 524 | 5.80e-13 | 70.1 |
| Msa0988420 | AT1G01260.3 | 32.759 | 116 | 75 | 1 | 140 | 255 | 412 | 524 | 5.80e-13 | 70.1 |
| Msa0988420 | AT2G46510.1 | 48.333 | 60 | 31 | 0 | 161 | 220 | 395 | 454 | 2.57e-12 | 68.2 |
| Msa0988420 | AT5G41315.1 | 29.448 | 163 | 91 | 5 | 151 | 290 | 432 | 593 | 3.23e-12 | 67.8 |
| Msa0988420 | AT5G41315.3 | 29.448 | 163 | 91 | 5 | 151 | 290 | 437 | 598 | 3.43e-12 | 67.8 |
| Msa0988420 | AT5G41315.2 | 29.412 | 153 | 85 | 4 | 161 | 290 | 449 | 601 | 3.69e-12 | 67.8 |
| Msa0988420 | AT4G09820.1 | 31.746 | 126 | 56 | 3 | 162 | 282 | 364 | 464 | 8.40e-12 | 66.6 |
| Msa0988420 | AT2G16910.1 | 30.323 | 155 | 86 | 5 | 162 | 294 | 315 | 469 | 2.89e-11 | 65.1 |
| Msa0988420 | AT4G16430.1 | 44.262 | 61 | 34 | 0 | 161 | 221 | 320 | 380 | 4.58e-11 | 64.3 |
| Msa0988420 | AT3G26744.1 | 30.508 | 177 | 89 | 6 | 162 | 316 | 308 | 472 | 5.04e-11 | 63.9 |
| Msa0988420 | AT3G26744.4 | 30.508 | 177 | 89 | 6 | 162 | 316 | 308 | 472 | 5.04e-11 | 63.9 |
| Msa0988420 | AT3G26744.2 | 30.508 | 177 | 89 | 6 | 162 | 316 | 308 | 472 | 5.04e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTAGTAGTGGGTGAATT+TGG | 0.150027 | 6_4:-41645602 | None:intergenic |
| TTCCATTGTCTCATTCAAAT+TGG | 0.177392 | 6_4:-41644740 | None:intergenic |
| ATCAAGTTATGAAACAAATT+TGG | 0.207098 | 6_4:+41645430 | Msa0988420:CDS |
| TCAGTTTCAAATTCCATCTT+TGG | 0.246525 | 6_4:+41645571 | Msa0988420:CDS |
| AATTATAGTGTCTTACTCTT+TGG | 0.246530 | 6_4:+41646184 | Msa0988420:CDS |
| AATTAGTAGTGGGTGAATTT+GGG | 0.256712 | 6_4:-41645601 | None:intergenic |
| TCTTGTTCCTAACCTTAAAA+AGG | 0.274757 | 6_4:+41645751 | Msa0988420:CDS |
| CAACAGCTGGTTATCTGATT+TGG | 0.283101 | 6_4:+41644798 | Msa0988420:CDS |
| CTGCAAGGGCAATGAAGTTC+TGG | 0.289671 | 6_4:-41645727 | None:intergenic |
| CAAGTGGAAGCAAGAATCTT+AGG | 0.299386 | 6_4:+41646067 | Msa0988420:CDS |
| GGGGCTTCTAGTTAAAATTA+TGG | 0.343764 | 6_4:+41646129 | Msa0988420:CDS |
| CTAGAAGCCCCTTGTGCTCT+TGG | 0.347775 | 6_4:-41646117 | None:intergenic |
| GCCCCTTGTGCTCTTGGCAT+TGG | 0.357940 | 6_4:-41646111 | None:intergenic |
| ATACACAGTACTATCTTAAC+TGG | 0.358450 | 6_4:-41646779 | None:intergenic |
| ATTCTTGCTTCCACTTGAAA+TGG | 0.371460 | 6_4:-41646061 | None:intergenic |
| TACTAATTCCTCACAAAACT+TGG | 0.378617 | 6_4:+41645616 | Msa0988420:CDS |
| GATGGTGATGAAGAAAGTTT+TGG | 0.390876 | 6_4:-41645536 | None:intergenic |
| TCCATTGTCTCATTCAAATT+GGG | 0.395037 | 6_4:-41644739 | None:intergenic |
| AAACAACAATGTTTCACTTC+GGG | 0.411590 | 6_4:+41645380 | Msa0988420:CDS |
| ATCGTTGCAGAGGCCTGGTT+TGG | 0.412083 | 6_4:-41645990 | None:intergenic |
| TATGTCATCATAACATGAAC+AGG | 0.426215 | 6_4:+41646582 | Msa0988420:exon |
| TAGGAAAATATATGTTGATT+CGG | 0.438258 | 6_4:+41646086 | Msa0988420:CDS |
| TTATCATCGTTGCAGAGGCC+TGG | 0.468161 | 6_4:-41645995 | None:intergenic |
| TGCAAGGGCAATGAAGTTCT+GGG | 0.487137 | 6_4:-41645726 | None:intergenic |
| CGAATATAATTTATTTGCTG+AGG | 0.494182 | 6_4:+41645277 | Msa0988420:CDS |
| AGTTTCTACCTGAGCAATGA+TGG | 0.495762 | 6_4:-41646227 | None:intergenic |
| TTAAGATAGTACTGTGTATG+TGG | 0.501219 | 6_4:+41646783 | Msa0988420:three_prime_UTR |
| AACTGAAAAGATGATTTAGA+TGG | 0.501895 | 6_4:-41645554 | None:intergenic |
| CAAACAACAATGTTTCACTT+CGG | 0.515112 | 6_4:+41645379 | Msa0988420:CDS |
| GTTAGGAACAAGAGCTGCAA+GGG | 0.522046 | 6_4:-41645741 | None:intergenic |
| AAAAGGTCTCGTACTCATCA+TGG | 0.528225 | 6_4:+41645659 | Msa0988420:CDS |
| AGACATTACCATCATTGCTC+AGG | 0.528978 | 6_4:+41646219 | Msa0988420:CDS |
| CCGACAGTCTTGACCAAACC+AGG | 0.533500 | 6_4:+41645977 | Msa0988420:CDS |
| TTTGGGGTGGTGTCCAAAGA+TGG | 0.540914 | 6_4:-41645584 | None:intergenic |
| ACTCTACCACATCTGTATCA+AGG | 0.544071 | 6_4:-41645316 | None:intergenic |
| AAATTATGGTCGAGATTCAA+AGG | 0.544393 | 6_4:+41646143 | Msa0988420:CDS |
| GAGCAATGATGGTAATGTCT+AGG | 0.547782 | 6_4:-41646216 | None:intergenic |
| AGGTTACAACATGAGCATAA+AGG | 0.548654 | 6_4:+41646522 | Msa0988420:CDS |
| ATTAGTAGTGGGTGAATTTG+GGG | 0.563748 | 6_4:-41645600 | None:intergenic |
| CAAATCAGATAACCAGCTGT+TGG | 0.564229 | 6_4:-41644797 | None:intergenic |
| TGATGAGTTACTAAGAGATG+TGG | 0.574471 | 6_4:-41645411 | None:intergenic |
| GATCCAATGCCAAGAGCACA+AGG | 0.574564 | 6_4:+41646108 | Msa0988420:CDS |
| TCATGGTCAAGATCATATCA+TGG | 0.581035 | 6_4:+41645676 | Msa0988420:CDS |
| TCCAATGCCAAGAGCACAAG+GGG | 0.581671 | 6_4:+41646110 | Msa0988420:CDS |
| TGTTGATTTACCATTTCAAG+TGG | 0.584256 | 6_4:+41646051 | Msa0988420:CDS |
| GAGTTTCTCTCACATGACAT+AGG | 0.592458 | 6_4:+41645335 | Msa0988420:CDS |
| AACAACAATGTTTCACTTCG+GGG | 0.595287 | 6_4:+41645381 | Msa0988420:CDS |
| CCTGGTTTGGTCAAGACTGT+CGG | 0.595636 | 6_4:-41645977 | None:intergenic |
| ACTTCAATGCTGCCATGCGT+AGG | 0.601033 | 6_4:-41646558 | None:intergenic |
| ACGTATCATCAACCAACAGC+TGG | 0.606784 | 6_4:+41644785 | Msa0988420:CDS |
| TAAGATAGTACTGTGTATGT+GGG | 0.606817 | 6_4:+41646784 | Msa0988420:three_prime_UTR |
| GGTTAGGAACAAGAGCTGCA+AGG | 0.614039 | 6_4:-41645742 | None:intergenic |
| AGTAGTGGGTGAATTTGGGG+TGG | 0.614176 | 6_4:-41645597 | None:intergenic |
| GATGAGTTACTAAGAGATGT+GGG | 0.618639 | 6_4:-41645410 | None:intergenic |
| ATTTAAAACAAGAAAGAGCA+AGG | 0.620828 | 6_4:-41644699 | None:intergenic |
| ACCCAATTTGAATGAGACAA+TGG | 0.623594 | 6_4:+41644738 | Msa0988420:exon |
| GAATTTCCTTGATACAGATG+TGG | 0.636353 | 6_4:+41645310 | Msa0988420:CDS |
| AGGAGTTATCATCGTTGCAG+AGG | 0.639176 | 6_4:-41646000 | None:intergenic |
| GTTACTAAGAGATGTGGGAG+TGG | 0.643033 | 6_4:-41645405 | None:intergenic |
| ATCCAATGCCAAGAGCACAA+GGG | 0.680253 | 6_4:+41646109 | Msa0988420:CDS |
| ACTTGTGAAGAACCTACGCA+TGG | 0.684270 | 6_4:+41646546 | Msa0988420:CDS |
| AATGCTCTCATGAGATGACG+AGG | 0.706550 | 6_4:-41646020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAATTATTTCTTTAAAA+AGG | + | chr6_4:41645134-41645153 | Msa0988420:intron | 10.0% |
| !!! | AATCTTAATTATTTTATAGT+TGG | + | chr6_4:41646495-41646514 | Msa0988420:intron | 10.0% |
| !!! | ATCTTAATTATTTTATAGTT+GGG | + | chr6_4:41646496-41646515 | Msa0988420:intron | 10.0% |
| !!! | GAAAAATTATTTCTTTAAAA+AGG | + | chr6_4:41645134-41645153 | Msa0988420:intron | 10.0% |
| !!! | AATCTTAATTATTTTATAGT+TGG | + | chr6_4:41646495-41646514 | Msa0988420:intron | 10.0% |
| !!! | ATCTTAATTATTTTATAGTT+GGG | + | chr6_4:41646496-41646515 | Msa0988420:intron | 10.0% |
| !! | TTTATAATGAAAAACATTTG+TGG | - | chr6_4:41645054-41645073 | None:intergenic | 15.0% |
| !!! | AACTTTAAATAGTAAGTTTT+TGG | - | chr6_4:41645160-41645179 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATGAAATAATCT+CGG | + | chr6_4:41645797-41645816 | Msa0988420:intron | 15.0% |
| !!! | TAAAAAACGTTTGAAATTTT+TGG | + | chr6_4:41645922-41645941 | Msa0988420:CDS | 15.0% |
| !!! | TCTCACAATTTTTATATTTT+TGG | + | chr6_4:41646291-41646310 | Msa0988420:intron | 15.0% |
| !!! | TATAAGAAGTATTTTATTCT+AGG | + | chr6_4:41646378-41646397 | Msa0988420:intron | 15.0% |
| !! | TTTATAATGAAAAACATTTG+TGG | - | chr6_4:41645054-41645073 | None:intergenic | 15.0% |
| !!! | AACTTTAAATAGTAAGTTTT+TGG | - | chr6_4:41645160-41645179 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATGAAATAATCT+CGG | + | chr6_4:41645797-41645816 | Msa0988420:intron | 15.0% |
| !!! | TAAAAAACGTTTGAAATTTT+TGG | + | chr6_4:41645922-41645941 | Msa0988420:CDS | 15.0% |
| !!! | TCTCACAATTTTTATATTTT+TGG | + | chr6_4:41646291-41646310 | Msa0988420:intron | 15.0% |
| !!! | TATAAGAAGTATTTTATTCT+AGG | + | chr6_4:41646378-41646397 | Msa0988420:intron | 15.0% |
| !!! | AATCATTAATGAGTACTTTT+AGG | - | chr6_4:41645108-41645127 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTTTTTTCTTC+AGG | + | chr6_4:41645247-41645266 | Msa0988420:intron | 20.0% |
| !! | TTTCCTGAAGAAAAAAAAAA+AGG | - | chr6_4:41645253-41645272 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTCAGGAAA+TGG | + | chr6_4:41645253-41645272 | Msa0988420:intron | 20.0% |
| !! | ATCAAGTTATGAAACAAATT+TGG | + | chr6_4:41645430-41645449 | Msa0988420:CDS | 20.0% |
| !!! | TAGGAAAATATATGTTGATT+CGG | + | chr6_4:41646086-41646105 | Msa0988420:CDS | 20.0% |
| !! | GAATATAATAGTAATAGTGA+TGG | - | chr6_4:41646319-41646338 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTCTTTTGATTT+TGG | + | chr6_4:41646432-41646451 | Msa0988420:intron | 20.0% |
| !!! | AATCATTAATGAGTACTTTT+AGG | - | chr6_4:41645108-41645127 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTTTTTTCTTC+AGG | + | chr6_4:41645247-41645266 | Msa0988420:intron | 20.0% |
| !! | TTTCCTGAAGAAAAAAAAAA+AGG | - | chr6_4:41645253-41645272 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTCAGGAAA+TGG | + | chr6_4:41645253-41645272 | Msa0988420:intron | 20.0% |
| !! | ATCAAGTTATGAAACAAATT+TGG | + | chr6_4:41645430-41645449 | Msa0988420:CDS | 20.0% |
| !!! | TAGGAAAATATATGTTGATT+CGG | + | chr6_4:41646086-41646105 | Msa0988420:CDS | 20.0% |
| !! | GAATATAATAGTAATAGTGA+TGG | - | chr6_4:41646319-41646338 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTCTTTTGATTT+TGG | + | chr6_4:41646432-41646451 | Msa0988420:intron | 20.0% |
| !! | ATTTAAAACAAGAAAGAGCA+AGG | - | chr6_4:41644702-41644721 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTCTTTCGCAC+CGG | + | chr6_4:41644854-41644873 | Msa0988420:intron | 25.0% |
| !! | CGAATATAATTTATTTGCTG+AGG | + | chr6_4:41645277-41645296 | Msa0988420:CDS | 25.0% |
| !!! | ATTGTTGTTTGTTTTGTTCT+TGG | - | chr6_4:41645370-41645389 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGCCAAATA+TGG | + | chr6_4:41645466-41645485 | Msa0988420:CDS | 25.0% |
| !!! | ATTTTTTTCAGCTCCATATT+TGG | - | chr6_4:41645482-41645501 | None:intergenic | 25.0% |
| ! | AACTGAAAAGATGATTTAGA+TGG | - | chr6_4:41645557-41645576 | None:intergenic | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+AGG | - | chr6_4:41645761-41645780 | None:intergenic | 25.0% |
| !! | TCACTTATTGTACCTTTTTA+AGG | - | chr6_4:41645766-41645785 | None:intergenic | 25.0% |
| ! | AATTATAGTGTCTTACTCTT+TGG | + | chr6_4:41646184-41646203 | Msa0988420:CDS | 25.0% |
| ! | AAATGTTAGTGGCAATTTAA+AGG | - | chr6_4:41646266-41646285 | None:intergenic | 25.0% |
| ! | ATTATATCGAGCAATTATAG+TGG | - | chr6_4:41646411-41646430 | None:intergenic | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | + | chr6_4:41646502-41646521 | Msa0988420:intron | 25.0% |
| !! | ATTTAAAACAAGAAAGAGCA+AGG | - | chr6_4:41644702-41644721 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTCTTTCGCAC+CGG | + | chr6_4:41644854-41644873 | Msa0988420:intron | 25.0% |
| !! | CGAATATAATTTATTTGCTG+AGG | + | chr6_4:41645277-41645296 | Msa0988420:CDS | 25.0% |
| !!! | ATTGTTGTTTGTTTTGTTCT+TGG | - | chr6_4:41645370-41645389 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGCCAAATA+TGG | + | chr6_4:41645466-41645485 | Msa0988420:CDS | 25.0% |
| !!! | ATTTTTTTCAGCTCCATATT+TGG | - | chr6_4:41645482-41645501 | None:intergenic | 25.0% |
| ! | AACTGAAAAGATGATTTAGA+TGG | - | chr6_4:41645557-41645576 | None:intergenic | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+AGG | - | chr6_4:41645761-41645780 | None:intergenic | 25.0% |
| !! | TCACTTATTGTACCTTTTTA+AGG | - | chr6_4:41645766-41645785 | None:intergenic | 25.0% |
| ! | AATTATAGTGTCTTACTCTT+TGG | + | chr6_4:41646184-41646203 | Msa0988420:CDS | 25.0% |
| ! | AAATGTTAGTGGCAATTTAA+AGG | - | chr6_4:41646266-41646285 | None:intergenic | 25.0% |
| ! | ATTATATCGAGCAATTATAG+TGG | - | chr6_4:41646411-41646430 | None:intergenic | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | + | chr6_4:41646502-41646521 | Msa0988420:intron | 25.0% |
| TCCATTGTCTCATTCAAATT+GGG | - | chr6_4:41644742-41644761 | None:intergenic | 30.0% | |
| TTCCATTGTCTCATTCAAAT+TGG | - | chr6_4:41644743-41644762 | None:intergenic | 30.0% | |
| ! | AAGAGTTAATCAAGTTGCTT+TGG | - | chr6_4:41645017-41645036 | None:intergenic | 30.0% |
| CAAACAACAATGTTTCACTT+CGG | + | chr6_4:41645379-41645398 | Msa0988420:CDS | 30.0% | |
| AAACAACAATGTTTCACTTC+GGG | + | chr6_4:41645380-41645399 | Msa0988420:CDS | 30.0% | |
| !! | TGAAGAAAGTTTTGGTGAAA+AGG | - | chr6_4:41645531-41645550 | None:intergenic | 30.0% |
| TCAGTTTCAAATTCCATCTT+TGG | + | chr6_4:41645571-41645590 | Msa0988420:CDS | 30.0% | |
| !! | AATTAGTAGTGGGTGAATTT+GGG | - | chr6_4:41645604-41645623 | None:intergenic | 30.0% |
| ! | TTTTGTGAGGAATTAGTAGT+GGG | - | chr6_4:41645614-41645633 | None:intergenic | 30.0% |
| TACTAATTCCTCACAAAACT+TGG | + | chr6_4:41645616-41645635 | Msa0988420:CDS | 30.0% | |
| !! | TTTTGTTTCCAAGTTTTGTG+AGG | - | chr6_4:41645627-41645646 | None:intergenic | 30.0% |
| TCTTGTTCCTAACCTTAAAA+AGG | + | chr6_4:41645751-41645770 | Msa0988420:CDS | 30.0% | |
| CGATTGCGTAAAAATATGTT+AGG | + | chr6_4:41645850-41645869 | Msa0988420:intron | 30.0% | |
| TTGCGTAAAAATATGTTAGG+TGG | + | chr6_4:41645853-41645872 | Msa0988420:intron | 30.0% | |
| !! | TGTTGATTTACCATTTCAAG+TGG | + | chr6_4:41646051-41646070 | Msa0988420:CDS | 30.0% |
| AAATTATGGTCGAGATTCAA+AGG | + | chr6_4:41646143-41646162 | Msa0988420:CDS | 30.0% | |
| GTGAGAGAAAAAAATGTTAG+TGG | - | chr6_4:41646277-41646296 | None:intergenic | 30.0% | |
| TATGTCATCATAACATGAAC+AGG | + | chr6_4:41646582-41646601 | Msa0988420:exon | 30.0% | |
| ! | GTCACAAATGTTTTCCTTAA+TGG | + | chr6_4:41646638-41646657 | Msa0988420:three_prime_UTR | 30.0% |
| CCAAAAATAGTACACCATTA+AGG | - | chr6_4:41646655-41646674 | None:intergenic | 30.0% | |
| ! | CCTTAATGGTGTACTATTTT+TGG | + | chr6_4:41646652-41646671 | Msa0988420:three_prime_UTR | 30.0% |
| ATACACAGTACTATCTTAAC+TGG | - | chr6_4:41646782-41646801 | None:intergenic | 30.0% | |
| TTAAGATAGTACTGTGTATG+TGG | + | chr6_4:41646783-41646802 | Msa0988420:three_prime_UTR | 30.0% | |
| TAAGATAGTACTGTGTATGT+GGG | + | chr6_4:41646784-41646803 | Msa0988420:three_prime_UTR | 30.0% | |
| TCCATTGTCTCATTCAAATT+GGG | - | chr6_4:41644742-41644761 | None:intergenic | 30.0% | |
| TTCCATTGTCTCATTCAAAT+TGG | - | chr6_4:41644743-41644762 | None:intergenic | 30.0% | |
| ! | AAGAGTTAATCAAGTTGCTT+TGG | - | chr6_4:41645017-41645036 | None:intergenic | 30.0% |
| CAAACAACAATGTTTCACTT+CGG | + | chr6_4:41645379-41645398 | Msa0988420:CDS | 30.0% | |
| AAACAACAATGTTTCACTTC+GGG | + | chr6_4:41645380-41645399 | Msa0988420:CDS | 30.0% | |
| !! | TGAAGAAAGTTTTGGTGAAA+AGG | - | chr6_4:41645531-41645550 | None:intergenic | 30.0% |
| TCAGTTTCAAATTCCATCTT+TGG | + | chr6_4:41645571-41645590 | Msa0988420:CDS | 30.0% | |
| !! | AATTAGTAGTGGGTGAATTT+GGG | - | chr6_4:41645604-41645623 | None:intergenic | 30.0% |
| ! | TTTTGTGAGGAATTAGTAGT+GGG | - | chr6_4:41645614-41645633 | None:intergenic | 30.0% |
| TACTAATTCCTCACAAAACT+TGG | + | chr6_4:41645616-41645635 | Msa0988420:CDS | 30.0% | |
| !! | TTTTGTTTCCAAGTTTTGTG+AGG | - | chr6_4:41645627-41645646 | None:intergenic | 30.0% |
| TCTTGTTCCTAACCTTAAAA+AGG | + | chr6_4:41645751-41645770 | Msa0988420:CDS | 30.0% | |
| CGATTGCGTAAAAATATGTT+AGG | + | chr6_4:41645850-41645869 | Msa0988420:intron | 30.0% | |
| TTGCGTAAAAATATGTTAGG+TGG | + | chr6_4:41645853-41645872 | Msa0988420:intron | 30.0% | |
| !! | TGTTGATTTACCATTTCAAG+TGG | + | chr6_4:41646051-41646070 | Msa0988420:CDS | 30.0% |
| AAATTATGGTCGAGATTCAA+AGG | + | chr6_4:41646143-41646162 | Msa0988420:CDS | 30.0% | |
| GTGAGAGAAAAAAATGTTAG+TGG | - | chr6_4:41646277-41646296 | None:intergenic | 30.0% | |
| TATGTCATCATAACATGAAC+AGG | + | chr6_4:41646582-41646601 | Msa0988420:exon | 30.0% | |
| ! | GTCACAAATGTTTTCCTTAA+TGG | + | chr6_4:41646638-41646657 | Msa0988420:three_prime_UTR | 30.0% |
| CCAAAAATAGTACACCATTA+AGG | - | chr6_4:41646655-41646674 | None:intergenic | 30.0% | |
| ! | CCTTAATGGTGTACTATTTT+TGG | + | chr6_4:41646652-41646671 | Msa0988420:three_prime_UTR | 30.0% |
| ATACACAGTACTATCTTAAC+TGG | - | chr6_4:41646782-41646801 | None:intergenic | 30.0% | |
| TTAAGATAGTACTGTGTATG+TGG | + | chr6_4:41646783-41646802 | Msa0988420:three_prime_UTR | 30.0% | |
| TAAGATAGTACTGTGTATGT+GGG | + | chr6_4:41646784-41646803 | Msa0988420:three_prime_UTR | 30.0% | |
| ACCCAATTTGAATGAGACAA+TGG | + | chr6_4:41644738-41644757 | Msa0988420:exon | 35.0% | |
| GAATTTCCTTGATACAGATG+TGG | + | chr6_4:41645310-41645329 | Msa0988420:CDS | 35.0% | |
| AACAACAATGTTTCACTTCG+GGG | + | chr6_4:41645381-41645400 | Msa0988420:CDS | 35.0% | |
| GATGAGTTACTAAGAGATGT+GGG | - | chr6_4:41645413-41645432 | None:intergenic | 35.0% | |
| TGATGAGTTACTAAGAGATG+TGG | - | chr6_4:41645414-41645433 | None:intergenic | 35.0% | |
| !! | GATGGTGATGAAGAAAGTTT+TGG | - | chr6_4:41645539-41645558 | None:intergenic | 35.0% |
| !! | ATTAGTAGTGGGTGAATTTG+GGG | - | chr6_4:41645603-41645622 | None:intergenic | 35.0% |
| !! | GAATTAGTAGTGGGTGAATT+TGG | - | chr6_4:41645605-41645624 | None:intergenic | 35.0% |
| ! | GTTTTGTGAGGAATTAGTAG+TGG | - | chr6_4:41645615-41645634 | None:intergenic | 35.0% |
| CAAAAACCTCAAAGAGCAAA+AGG | + | chr6_4:41645642-41645661 | Msa0988420:CDS | 35.0% | |
| TCATGGTCAAGATCATATCA+TGG | + | chr6_4:41645676-41645695 | Msa0988420:CDS | 35.0% | |
| ATTCTTGCTTCCACTTGAAA+TGG | - | chr6_4:41646064-41646083 | None:intergenic | 35.0% | |
| ! | GGGGCTTCTAGTTAAAATTA+TGG | + | chr6_4:41646129-41646148 | Msa0988420:CDS | 35.0% |
| AGGTTACAACATGAGCATAA+AGG | + | chr6_4:41646522-41646541 | Msa0988420:CDS | 35.0% | |
| ACCCAATTTGAATGAGACAA+TGG | + | chr6_4:41644738-41644757 | Msa0988420:exon | 35.0% | |
| GAATTTCCTTGATACAGATG+TGG | + | chr6_4:41645310-41645329 | Msa0988420:CDS | 35.0% | |
| AACAACAATGTTTCACTTCG+GGG | + | chr6_4:41645381-41645400 | Msa0988420:CDS | 35.0% | |
| GATGAGTTACTAAGAGATGT+GGG | - | chr6_4:41645413-41645432 | None:intergenic | 35.0% | |
| TGATGAGTTACTAAGAGATG+TGG | - | chr6_4:41645414-41645433 | None:intergenic | 35.0% | |
| !! | GATGGTGATGAAGAAAGTTT+TGG | - | chr6_4:41645539-41645558 | None:intergenic | 35.0% |
| !! | ATTAGTAGTGGGTGAATTTG+GGG | - | chr6_4:41645603-41645622 | None:intergenic | 35.0% |
| !! | GAATTAGTAGTGGGTGAATT+TGG | - | chr6_4:41645605-41645624 | None:intergenic | 35.0% |
| ! | GTTTTGTGAGGAATTAGTAG+TGG | - | chr6_4:41645615-41645634 | None:intergenic | 35.0% |
| CAAAAACCTCAAAGAGCAAA+AGG | + | chr6_4:41645642-41645661 | Msa0988420:CDS | 35.0% | |
| TCATGGTCAAGATCATATCA+TGG | + | chr6_4:41645676-41645695 | Msa0988420:CDS | 35.0% | |
| ATTCTTGCTTCCACTTGAAA+TGG | - | chr6_4:41646064-41646083 | None:intergenic | 35.0% | |
| ! | GGGGCTTCTAGTTAAAATTA+TGG | + | chr6_4:41646129-41646148 | Msa0988420:CDS | 35.0% |
| AGGTTACAACATGAGCATAA+AGG | + | chr6_4:41646522-41646541 | Msa0988420:CDS | 35.0% | |
| CAAATCAGATAACCAGCTGT+TGG | - | chr6_4:41644800-41644819 | None:intergenic | 40.0% | |
| CAACAGCTGGTTATCTGATT+TGG | + | chr6_4:41644798-41644817 | Msa0988420:CDS | 40.0% | |
| ATTAGTCGCTCACCTTTGAT+GGG | - | chr6_4:41644887-41644906 | None:intergenic | 40.0% | |
| AATTAGTCGCTCACCTTTGA+TGG | - | chr6_4:41644888-41644907 | None:intergenic | 40.0% | |
| TCAAAGGTGAGCGACTAATT+TGG | + | chr6_4:41644888-41644907 | Msa0988420:intron | 40.0% | |
| !!! | AGTACTTTTAGGACACTCGT+TGG | - | chr6_4:41645097-41645116 | None:intergenic | 40.0% |
| ! | CTAATGAAGCGCTCTTGTTA+GGG | - | chr6_4:41645194-41645213 | None:intergenic | 40.0% |
| ACTCTACCACATCTGTATCA+AGG | - | chr6_4:41645319-41645338 | None:intergenic | 40.0% | |
| GAGTTTCTCTCACATGACAT+AGG | + | chr6_4:41645335-41645354 | Msa0988420:CDS | 40.0% | |
| AAAAGGTCTCGTACTCATCA+TGG | + | chr6_4:41645659-41645678 | Msa0988420:CDS | 40.0% | |
| CAAGTGGAAGCAAGAATCTT+AGG | + | chr6_4:41646067-41646086 | Msa0988420:CDS | 40.0% | |
| ! | GAGCAATGATGGTAATGTCT+AGG | - | chr6_4:41646219-41646238 | None:intergenic | 40.0% |
| AGACATTACCATCATTGCTC+AGG | + | chr6_4:41646219-41646238 | Msa0988420:CDS | 40.0% | |
| AGTTTCTACCTGAGCAATGA+TGG | - | chr6_4:41646230-41646249 | None:intergenic | 40.0% | |
| !! | AACAGGAGCATGATTTTTGC+TGG | + | chr6_4:41646599-41646618 | Msa0988420:three_prime_UTR | 40.0% |
| CAAATCAGATAACCAGCTGT+TGG | - | chr6_4:41644800-41644819 | None:intergenic | 40.0% | |
| CAACAGCTGGTTATCTGATT+TGG | + | chr6_4:41644798-41644817 | Msa0988420:CDS | 40.0% | |
| ATTAGTCGCTCACCTTTGAT+GGG | - | chr6_4:41644887-41644906 | None:intergenic | 40.0% | |
| AATTAGTCGCTCACCTTTGA+TGG | - | chr6_4:41644888-41644907 | None:intergenic | 40.0% | |
| TCAAAGGTGAGCGACTAATT+TGG | + | chr6_4:41644888-41644907 | Msa0988420:intron | 40.0% | |
| !!! | AGTACTTTTAGGACACTCGT+TGG | - | chr6_4:41645097-41645116 | None:intergenic | 40.0% |
| ! | CTAATGAAGCGCTCTTGTTA+GGG | - | chr6_4:41645194-41645213 | None:intergenic | 40.0% |
| ACTCTACCACATCTGTATCA+AGG | - | chr6_4:41645319-41645338 | None:intergenic | 40.0% | |
| GAGTTTCTCTCACATGACAT+AGG | + | chr6_4:41645335-41645354 | Msa0988420:CDS | 40.0% | |
| AAAAGGTCTCGTACTCATCA+TGG | + | chr6_4:41645659-41645678 | Msa0988420:CDS | 40.0% | |
| CAAGTGGAAGCAAGAATCTT+AGG | + | chr6_4:41646067-41646086 | Msa0988420:CDS | 40.0% | |
| ! | GAGCAATGATGGTAATGTCT+AGG | - | chr6_4:41646219-41646238 | None:intergenic | 40.0% |
| AGACATTACCATCATTGCTC+AGG | + | chr6_4:41646219-41646238 | Msa0988420:CDS | 40.0% | |
| AGTTTCTACCTGAGCAATGA+TGG | - | chr6_4:41646230-41646249 | None:intergenic | 40.0% | |
| !! | AACAGGAGCATGATTTTTGC+TGG | + | chr6_4:41646599-41646618 | Msa0988420:three_prime_UTR | 40.0% |
| ACGTATCATCAACCAACAGC+TGG | + | chr6_4:41644785-41644804 | Msa0988420:CDS | 45.0% | |
| ! | CTAATTTGGCTCATGCGTAG+AGG | + | chr6_4:41644902-41644921 | Msa0988420:intron | 45.0% |
| AATACCGGATTCGATTCCCA+GGG | - | chr6_4:41644954-41644973 | None:intergenic | 45.0% | |
| AATCGAATCCGGTATTCCCT+GGG | + | chr6_4:41644958-41644977 | Msa0988420:intron | 45.0% | |
| ! | GCTAATGAAGCGCTCTTGTT+AGG | - | chr6_4:41645195-41645214 | None:intergenic | 45.0% |
| GTTACTAAGAGATGTGGGAG+TGG | - | chr6_4:41645408-41645427 | None:intergenic | 45.0% | |
| ! | ACGAGACCTTTTGCTCTTTG+AGG | - | chr6_4:41645651-41645670 | None:intergenic | 45.0% |
| TGCAAGGGCAATGAAGTTCT+GGG | - | chr6_4:41645729-41645748 | None:intergenic | 45.0% | |
| GTTAGGAACAAGAGCTGCAA+GGG | - | chr6_4:41645744-41645763 | None:intergenic | 45.0% | |
| AGGAGTTATCATCGTTGCAG+AGG | - | chr6_4:41646003-41646022 | None:intergenic | 45.0% | |
| AATGCTCTCATGAGATGACG+AGG | - | chr6_4:41646023-41646042 | None:intergenic | 45.0% | |
| ! | ATCCAATGCCAAGAGCACAA+GGG | + | chr6_4:41646109-41646128 | Msa0988420:CDS | 45.0% |
| ACTTGTGAAGAACCTACGCA+TGG | + | chr6_4:41646546-41646565 | Msa0988420:CDS | 45.0% | |
| ACGTATCATCAACCAACAGC+TGG | + | chr6_4:41644785-41644804 | Msa0988420:CDS | 45.0% | |
| ! | CTAATTTGGCTCATGCGTAG+AGG | + | chr6_4:41644902-41644921 | Msa0988420:intron | 45.0% |
| AATACCGGATTCGATTCCCA+GGG | - | chr6_4:41644954-41644973 | None:intergenic | 45.0% | |
| AATCGAATCCGGTATTCCCT+GGG | + | chr6_4:41644958-41644977 | Msa0988420:intron | 45.0% | |
| ! | GCTAATGAAGCGCTCTTGTT+AGG | - | chr6_4:41645195-41645214 | None:intergenic | 45.0% |
| GTTACTAAGAGATGTGGGAG+TGG | - | chr6_4:41645408-41645427 | None:intergenic | 45.0% | |
| ! | ACGAGACCTTTTGCTCTTTG+AGG | - | chr6_4:41645651-41645670 | None:intergenic | 45.0% |
| TGCAAGGGCAATGAAGTTCT+GGG | - | chr6_4:41645729-41645748 | None:intergenic | 45.0% | |
| GTTAGGAACAAGAGCTGCAA+GGG | - | chr6_4:41645744-41645763 | None:intergenic | 45.0% | |
| AGGAGTTATCATCGTTGCAG+AGG | - | chr6_4:41646003-41646022 | None:intergenic | 45.0% | |
| AATGCTCTCATGAGATGACG+AGG | - | chr6_4:41646023-41646042 | None:intergenic | 45.0% | |
| ! | ATCCAATGCCAAGAGCACAA+GGG | + | chr6_4:41646109-41646128 | Msa0988420:CDS | 45.0% |
| ACTTGTGAAGAACCTACGCA+TGG | + | chr6_4:41646546-41646565 | Msa0988420:CDS | 45.0% | |
| !!! | ATAAAATAAATTTTAAAATG+AGG | - | chr6_4:41646698-41646717 | None:intergenic | 5.0% |
| !!! | ATAAAATAAATTTTAAAATG+AGG | - | chr6_4:41646698-41646717 | None:intergenic | 5.0% |
| ! | ACCTTTGATGGGTCGGAAAC+CGG | - | chr6_4:41644876-41644895 | None:intergenic | 50.0% |
| ATACCGGATTCGATTCCCAG+GGG | - | chr6_4:41644953-41644972 | None:intergenic | 50.0% | |
| GAATACCGGATTCGATTCCC+AGG | - | chr6_4:41644955-41644974 | None:intergenic | 50.0% | |
| GAATCGAATCCGGTATTCCC+TGG | + | chr6_4:41644957-41644976 | Msa0988420:intron | 50.0% | |
| TCCTTTCAAGGACGTACCCA+GGG | - | chr6_4:41644977-41644996 | None:intergenic | 50.0% | |
| GTGGCAATGACCTCCTTTCA+AGG | - | chr6_4:41644989-41645008 | None:intergenic | 50.0% | |
| TGAAAGGAGGTCATTGCCAC+TGG | + | chr6_4:41644989-41645008 | Msa0988420:intron | 50.0% | |
| ! | TCAAGTTGCTTTGGCTCCAG+TGG | - | chr6_4:41645008-41645027 | None:intergenic | 50.0% |
| ! | TTTGGGGTGGTGTCCAAAGA+TGG | - | chr6_4:41645587-41645606 | None:intergenic | 50.0% |
| !! | AGTAGTGGGTGAATTTGGGG+TGG | - | chr6_4:41645600-41645619 | None:intergenic | 50.0% |
| CTGCAAGGGCAATGAAGTTC+TGG | - | chr6_4:41645730-41645749 | None:intergenic | 50.0% | |
| GGTTAGGAACAAGAGCTGCA+AGG | - | chr6_4:41645745-41645764 | None:intergenic | 50.0% | |
| !! | CCTGGTTTGGTCAAGACTGT+CGG | - | chr6_4:41645980-41645999 | None:intergenic | 50.0% |
| TTATCATCGTTGCAGAGGCC+TGG | - | chr6_4:41645998-41646017 | None:intergenic | 50.0% | |
| ! | GATCCAATGCCAAGAGCACA+AGG | + | chr6_4:41646108-41646127 | Msa0988420:CDS | 50.0% |
| ! | TCCAATGCCAAGAGCACAAG+GGG | + | chr6_4:41646110-41646129 | Msa0988420:CDS | 50.0% |
| ACTTCAATGCTGCCATGCGT+AGG | - | chr6_4:41646561-41646580 | None:intergenic | 50.0% | |
| ! | ACCTTTGATGGGTCGGAAAC+CGG | - | chr6_4:41644876-41644895 | None:intergenic | 50.0% |
| ATACCGGATTCGATTCCCAG+GGG | - | chr6_4:41644953-41644972 | None:intergenic | 50.0% | |
| GAATACCGGATTCGATTCCC+AGG | - | chr6_4:41644955-41644974 | None:intergenic | 50.0% | |
| GAATCGAATCCGGTATTCCC+TGG | + | chr6_4:41644957-41644976 | Msa0988420:intron | 50.0% | |
| TCCTTTCAAGGACGTACCCA+GGG | - | chr6_4:41644977-41644996 | None:intergenic | 50.0% | |
| GTGGCAATGACCTCCTTTCA+AGG | - | chr6_4:41644989-41645008 | None:intergenic | 50.0% | |
| TGAAAGGAGGTCATTGCCAC+TGG | + | chr6_4:41644989-41645008 | Msa0988420:intron | 50.0% | |
| ! | TCAAGTTGCTTTGGCTCCAG+TGG | - | chr6_4:41645008-41645027 | None:intergenic | 50.0% |
| ! | TTTGGGGTGGTGTCCAAAGA+TGG | - | chr6_4:41645587-41645606 | None:intergenic | 50.0% |
| !! | AGTAGTGGGTGAATTTGGGG+TGG | - | chr6_4:41645600-41645619 | None:intergenic | 50.0% |
| CTGCAAGGGCAATGAAGTTC+TGG | - | chr6_4:41645730-41645749 | None:intergenic | 50.0% | |
| GGTTAGGAACAAGAGCTGCA+AGG | - | chr6_4:41645745-41645764 | None:intergenic | 50.0% | |
| !! | CCTGGTTTGGTCAAGACTGT+CGG | - | chr6_4:41645980-41645999 | None:intergenic | 50.0% |
| TTATCATCGTTGCAGAGGCC+TGG | - | chr6_4:41645998-41646017 | None:intergenic | 50.0% | |
| ! | GATCCAATGCCAAGAGCACA+AGG | + | chr6_4:41646108-41646127 | Msa0988420:CDS | 50.0% |
| ! | TCCAATGCCAAGAGCACAAG+GGG | + | chr6_4:41646110-41646129 | Msa0988420:CDS | 50.0% |
| ACTTCAATGCTGCCATGCGT+AGG | - | chr6_4:41646561-41646580 | None:intergenic | 50.0% | |
| ! | ACCGGTTTCCGACCCATCAA+AGG | + | chr6_4:41644872-41644891 | Msa0988420:intron | 55.0% |
| ! | GTCGCTCACCTTTGATGGGT+CGG | - | chr6_4:41644883-41644902 | None:intergenic | 55.0% |
| TTCCCCCTGGGAATCGAATC+CGG | + | chr6_4:41644947-41644966 | Msa0988420:intron | 55.0% | |
| TACCGGATTCGATTCCCAGG+GGG | - | chr6_4:41644952-41644971 | None:intergenic | 55.0% | |
| AGGACGTACCCAGGGAATAC+CGG | - | chr6_4:41644969-41644988 | None:intergenic | 55.0% | |
| TCCCTGGGTACGTCCTTGAA+AGG | + | chr6_4:41644973-41644992 | Msa0988420:intron | 55.0% | |
| CTCCTTTCAAGGACGTACCC+AGG | - | chr6_4:41644978-41644997 | None:intergenic | 55.0% | |
| CTGGGTACGTCCTTGAAAGG+AGG | + | chr6_4:41644976-41644995 | Msa0988420:intron | 55.0% | |
| CCGACAGTCTTGACCAAACC+AGG | + | chr6_4:41645977-41645996 | Msa0988420:CDS | 55.0% | |
| ATCGTTGCAGAGGCCTGGTT+TGG | - | chr6_4:41645993-41646012 | None:intergenic | 55.0% | |
| CTAGAAGCCCCTTGTGCTCT+TGG | - | chr6_4:41646120-41646139 | None:intergenic | 55.0% | |
| ! | ACCGGTTTCCGACCCATCAA+AGG | + | chr6_4:41644872-41644891 | Msa0988420:intron | 55.0% |
| ! | GTCGCTCACCTTTGATGGGT+CGG | - | chr6_4:41644883-41644902 | None:intergenic | 55.0% |
| TTCCCCCTGGGAATCGAATC+CGG | + | chr6_4:41644947-41644966 | Msa0988420:intron | 55.0% | |
| TACCGGATTCGATTCCCAGG+GGG | - | chr6_4:41644952-41644971 | None:intergenic | 55.0% | |
| AGGACGTACCCAGGGAATAC+CGG | - | chr6_4:41644969-41644988 | None:intergenic | 55.0% | |
| TCCCTGGGTACGTCCTTGAA+AGG | + | chr6_4:41644973-41644992 | Msa0988420:intron | 55.0% | |
| CTCCTTTCAAGGACGTACCC+AGG | - | chr6_4:41644978-41644997 | None:intergenic | 55.0% | |
| CTGGGTACGTCCTTGAAAGG+AGG | + | chr6_4:41644976-41644995 | Msa0988420:intron | 55.0% | |
| CCGACAGTCTTGACCAAACC+AGG | + | chr6_4:41645977-41645996 | Msa0988420:CDS | 55.0% | |
| ATCGTTGCAGAGGCCTGGTT+TGG | - | chr6_4:41645993-41646012 | None:intergenic | 55.0% | |
| CTAGAAGCCCCTTGTGCTCT+TGG | - | chr6_4:41646120-41646139 | None:intergenic | 55.0% | |
| GGGGAACAACGCTTGGTCAG+TGG | - | chr6_4:41644933-41644952 | None:intergenic | 60.0% | |
| ! | TGACCAAGCGTTGTTCCCCC+TGG | + | chr6_4:41644934-41644953 | Msa0988420:intron | 60.0% |
| ! | GACCAAGCGTTGTTCCCCCT+GGG | + | chr6_4:41644935-41644954 | Msa0988420:intron | 60.0% |
| TTCCCAGGGGGAACAACGCT+TGG | - | chr6_4:41644940-41644959 | None:intergenic | 60.0% | |
| GCCCCTTGTGCTCTTGGCAT+TGG | - | chr6_4:41646114-41646133 | None:intergenic | 60.0% | |
| GGGGAACAACGCTTGGTCAG+TGG | - | chr6_4:41644933-41644952 | None:intergenic | 60.0% | |
| ! | TGACCAAGCGTTGTTCCCCC+TGG | + | chr6_4:41644934-41644953 | Msa0988420:intron | 60.0% |
| ! | GACCAAGCGTTGTTCCCCCT+GGG | + | chr6_4:41644935-41644954 | Msa0988420:intron | 60.0% |
| TTCCCAGGGGGAACAACGCT+TGG | - | chr6_4:41644940-41644959 | None:intergenic | 60.0% | |
| GCCCCTTGTGCTCTTGGCAT+TGG | - | chr6_4:41646114-41646133 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 41644695 | 41646833 | 41644695 | ID=Msa0988420;Name=Msa0988420 |
| chr6_4 | mRNA | 41644695 | 41646833 | 41644695 | ID=Msa0988420-mRNA-1;Parent=Msa0988420;Name=Msa0988420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=62|1|1|1|1|1|4|239|338 |
| chr6_4 | exon | 41644695 | 41644819 | 41644695 | ID=Msa0988420-mRNA-1:exon:9886;Parent=Msa0988420-mRNA-1 |
| chr6_4 | exon | 41645269 | 41645772 | 41645269 | ID=Msa0988420-mRNA-1:exon:9887;Parent=Msa0988420-mRNA-1 |
| chr6_4 | exon | 41645872 | 41646240 | 41645872 | ID=Msa0988420-mRNA-1:exon:9888;Parent=Msa0988420-mRNA-1 |
| chr6_4 | exon | 41646514 | 41646833 | 41646514 | ID=Msa0988420-mRNA-1:exon:9889;Parent=Msa0988420-mRNA-1 |
| chr6_4 | five_prime_UTR | 41644695 | 41644756 | 41644695 | ID=Msa0988420-mRNA-1:five_prime_utr;Parent=Msa0988420-mRNA-1 |
| chr6_4 | CDS | 41644757 | 41644819 | 41644757 | ID=Msa0988420-mRNA-1:cds;Parent=Msa0988420-mRNA-1 |
| chr6_4 | CDS | 41645269 | 41645772 | 41645269 | ID=Msa0988420-mRNA-1:cds;Parent=Msa0988420-mRNA-1 |
| chr6_4 | CDS | 41645872 | 41646240 | 41645872 | ID=Msa0988420-mRNA-1:cds;Parent=Msa0988420-mRNA-1 |
| chr6_4 | CDS | 41646514 | 41646594 | 41646514 | ID=Msa0988420-mRNA-1:cds;Parent=Msa0988420-mRNA-1 |
| chr6_4 | three_prime_UTR | 41646595 | 41646833 | 41646595 | ID=Msa0988420-mRNA-1:three_prime_utr;Parent=Msa0988420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
