Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208400 | XP_013443468.2 | 91.922 | 359 | 24 | 2 | 1 | 358 | 1 | 355 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208400 | sp|Q9T072|BH025_ARATH | 43.814 | 194 | 106 | 2 | 166 | 357 | 136 | 328 | 3.04e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208400 | A0A396J7S7 | 91.922 | 359 | 24 | 2 | 1 | 358 | 1 | 355 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0208400 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0208400 | 0.809996 | 1.435568e-50 | -8.615850e-47 |
| Msa0030320 | Msa0208400 | 0.802984 | 4.327592e-49 | -8.615850e-47 |
| Msa0035090 | Msa0208400 | 0.809833 | 1.556490e-50 | -8.615850e-47 |
| Msa0045660 | Msa0208400 | 0.808441 | 3.092191e-50 | -8.615850e-47 |
| Msa0046670 | Msa0208400 | 0.826377 | 2.804566e-54 | -8.615850e-47 |
| Msa0046860 | Msa0208400 | 0.852958 | 3.279837e-61 | -8.615850e-47 |
| Msa0053680 | Msa0208400 | 0.801121 | 1.045356e-48 | -8.615850e-47 |
| Msa0055650 | Msa0208400 | 0.810086 | 1.372712e-50 | -8.615850e-47 |
| Msa0063850 | Msa0208400 | 0.801212 | 1.001812e-48 | -8.615850e-47 |
| Msa0072910 | Msa0208400 | 0.806044 | 9.958502e-50 | -8.615850e-47 |
| Msa0077920 | Msa0208400 | 0.803633 | 3.175974e-49 | -8.615850e-47 |
| Msa0089410 | Msa0208400 | 0.835747 | 1.401342e-56 | -8.615850e-47 |
| Msa0094060 | Msa0208400 | 0.810259 | 1.259575e-50 | -8.615850e-47 |
| Msa0112800 | Msa0208400 | 0.804934 | 1.702194e-49 | -8.615850e-47 |
| Msa0125810 | Msa0208400 | 0.812973 | 3.237555e-51 | -8.615850e-47 |
| Msa0130120 | Msa0208400 | 0.815342 | 9.712056e-52 | -8.615850e-47 |
| Msa0136520 | Msa0208400 | 0.839462 | 1.562228e-57 | -8.615850e-47 |
| Msa0143360 | Msa0208400 | 0.826467 | 2.669483e-54 | -8.615850e-47 |
| Msa0148590 | Msa0208400 | 0.818107 | 2.329345e-52 | -8.615850e-47 |
| Msa0166580 | Msa0208400 | 0.815599 | 8.510661e-52 | -8.615850e-47 |
| Msa0187560 | Msa0208400 | 0.869648 | 2.645122e-66 | -8.615850e-47 |
| Msa0187820 | Msa0208400 | 0.861212 | 1.202562e-63 | -8.615850e-47 |
| Msa0194370 | Msa0208400 | 0.807384 | 5.188829e-50 | -8.615850e-47 |
| Msa0198140 | Msa0208400 | 0.808462 | 3.060311e-50 | -8.615850e-47 |
| Msa0198220 | Msa0208400 | 0.803969 | 2.704834e-49 | -8.615850e-47 |
| Msa0201910 | Msa0208400 | 0.838510 | 2.754545e-57 | -8.615850e-47 |
| Msa0207220 | Msa0208400 | 0.808183 | 3.510382e-50 | -8.615850e-47 |
| Msa0207530 | Msa0208400 | 0.811166 | 8.020512e-51 | -8.615850e-47 |
| Msa0207900 | Msa0208400 | 0.832903 | 7.248594e-56 | -8.615850e-47 |
| Msa0208400 | Msa0208560 | 0.998483 | 2.085960e-266 | -8.615850e-47 |
| Msa0208400 | Msa0210870 | 0.808166 | 3.539060e-50 | -8.615850e-47 |
| Msa0208400 | Msa0219550 | 0.804613 | 1.986350e-49 | -8.615850e-47 |
| Msa0208400 | Msa0221940 | 0.807195 | 5.691919e-50 | -8.615850e-47 |
| Msa0208400 | Msa0229420 | 0.810289 | 1.241114e-50 | -8.615850e-47 |
| Msa0208400 | Msa0232170 | 0.803851 | 2.861702e-49 | -8.615850e-47 |
| Msa0208400 | Msa0244370 | 0.844643 | 6.659598e-59 | -8.615850e-47 |
| Msa0208400 | Msa0260960 | 0.824016 | 1.014375e-53 | -8.615850e-47 |
| Msa0208400 | Msa0263470 | 0.827788 | 1.289332e-54 | -8.615850e-47 |
| Msa0208400 | Msa0263520 | 0.800817 | 1.206179e-48 | -8.615850e-47 |
| Msa0208400 | Msa0265780 | 0.811053 | 8.486605e-51 | -8.615850e-47 |
| Msa0208400 | Msa0266010 | 0.835806 | 1.354063e-56 | -8.615850e-47 |
| Msa0208400 | Msa0270640 | 0.825247 | 5.201848e-54 | -8.615850e-47 |
| Msa0208400 | Msa0282880 | 0.851567 | 8.158637e-61 | -8.615850e-47 |
| Msa0208400 | Msa0288280 | 0.812387 | 4.350234e-51 | -8.615850e-47 |
| Msa0208400 | Msa0301060 | 0.815844 | 7.508490e-52 | -8.615850e-47 |
| Msa0208400 | Msa0301300 | 0.807198 | 5.682783e-50 | -8.615850e-47 |
| Msa0208400 | Msa0303950 | 0.801874 | 7.327999e-49 | -8.615850e-47 |
| Msa0208400 | Msa0314750 | 0.821430 | 4.055204e-53 | -8.615850e-47 |
| Msa0208400 | Msa0321180 | 0.846508 | 2.077934e-59 | -8.615850e-47 |
| Msa0208400 | Msa0321200 | 0.844782 | 6.107681e-59 | -8.615850e-47 |
| Msa0208400 | Msa0334650 | 0.817359 | 3.434930e-52 | -8.615850e-47 |
| Msa0208400 | Msa0338610 | 0.841439 | 4.748221e-58 | -8.615850e-47 |
| Msa0208400 | Msa0343200 | 0.813148 | 2.963874e-51 | -8.615850e-47 |
| Msa0208400 | Msa0343460 | 0.814281 | 1.668712e-51 | -8.615850e-47 |
| Msa0208400 | Msa0359230 | 0.806236 | 9.074851e-50 | -8.615850e-47 |
| Msa0208400 | Msa0365200 | 0.822328 | 2.511905e-53 | -8.615850e-47 |
| Msa0208400 | Msa0379720 | 0.806513 | 7.931343e-50 | -8.615850e-47 |
| Msa0208400 | Msa0385400 | 0.805501 | 1.294831e-49 | -8.615850e-47 |
| Msa0208400 | Msa0415310 | 0.811992 | 5.304568e-51 | -8.615850e-47 |
| Msa0208400 | Msa0426990 | 0.805867 | 1.084732e-49 | -8.615850e-47 |
| Msa0208400 | Msa0429100 | 0.837373 | 5.401177e-57 | -8.615850e-47 |
| Msa0208400 | Msa0429130 | 0.816236 | 6.136081e-52 | -8.615850e-47 |
| Msa0208400 | Msa0429500 | 0.813585 | 2.375744e-51 | -8.615850e-47 |
| Msa0208400 | Msa0451370 | 0.829117 | 6.159651e-55 | -8.615850e-47 |
| Msa0208400 | Msa0477070 | 0.821919 | 3.125443e-53 | -8.615850e-47 |
| Msa0208400 | Msa0481620 | 0.886067 | 4.719317e-72 | -8.615850e-47 |
| Msa0208400 | Msa0486210 | 0.802215 | 6.235906e-49 | -8.615850e-47 |
| Msa0208400 | Msa0493640 | 0.815601 | 8.501566e-52 | -8.615850e-47 |
| Msa0208400 | Msa0517360 | 0.807288 | 5.439393e-50 | -8.615850e-47 |
| Msa0208400 | Msa0521440 | 0.817775 | 2.768499e-52 | -8.615850e-47 |
| Msa0208400 | Msa0542030 | 0.842597 | 2.346295e-58 | -8.615850e-47 |
| Msa0208400 | Msa0548720 | 0.832796 | 7.704193e-56 | -8.615850e-47 |
| Msa0208400 | Msa0550870 | 0.817665 | 2.931494e-52 | -8.615850e-47 |
| Msa0208400 | Msa0563230 | 0.813457 | 2.534828e-51 | -8.615850e-47 |
| Msa0208400 | Msa0570310 | 0.817471 | 3.242069e-52 | -8.615850e-47 |
| Msa0208400 | Msa0585930 | 0.809207 | 2.121174e-50 | -8.615850e-47 |
| Msa0208400 | Msa0587060 | 0.819452 | 1.153175e-52 | -8.615850e-47 |
| Msa0208400 | Msa0598260 | 0.807114 | 5.919340e-50 | -8.615850e-47 |
| Msa0208400 | Msa0610850 | 0.801661 | 8.103772e-49 | -8.615850e-47 |
| Msa0208400 | Msa0619480 | 0.813159 | 2.947671e-51 | -8.615850e-47 |
| Msa0208400 | Msa0622400 | 0.834303 | 3.240328e-56 | -8.615850e-47 |
| Msa0208400 | Msa0622690 | 0.808735 | 2.675958e-50 | -8.615850e-47 |
| Msa0208400 | Msa0623480 | 0.810117 | 1.352153e-50 | -8.615850e-47 |
| Msa0208400 | Msa0626890 | 0.807021 | 6.196153e-50 | -8.615850e-47 |
| Msa0208400 | Msa0637910 | 0.812310 | 4.520747e-51 | -8.615850e-47 |
| Msa0208400 | Msa0641970 | 0.802647 | 5.079929e-49 | -8.615850e-47 |
| Msa0208400 | Msa0664110 | 0.837604 | 4.711673e-57 | -8.615850e-47 |
| Msa0208400 | Msa0664130 | 0.833828 | 4.262052e-56 | -8.615850e-47 |
| Msa0208400 | Msa0665010 | 0.816895 | 4.367163e-52 | -8.615850e-47 |
| Msa0208400 | Msa0681040 | 0.803012 | 4.270541e-49 | -8.615850e-47 |
| Msa0208400 | Msa0684910 | 0.803448 | 3.468713e-49 | -8.615850e-47 |
| Msa0208400 | Msa0691150 | 0.818027 | 2.427957e-52 | -8.615850e-47 |
| Msa0208400 | Msa0713590 | 0.882958 | 6.731539e-71 | -8.615850e-47 |
| Msa0208400 | Msa0714930 | 0.803363 | 3.612312e-49 | -8.615850e-47 |
| Msa0208400 | Msa0747660 | 0.818449 | 1.949388e-52 | -8.615850e-47 |
| Msa0208400 | Msa0749130 | 0.881428 | 2.420500e-70 | -8.615850e-47 |
| Msa0208400 | Msa0755530 | 0.889273 | 2.807882e-73 | -8.615850e-47 |
| Msa0208400 | Msa0756940 | 0.805657 | 1.201056e-49 | -8.615850e-47 |
| Msa0208400 | Msa0797210 | 0.900360 | 7.922520e-78 | -8.615850e-47 |
| Msa0208400 | Msa0835070 | 0.891586 | 3.471190e-74 | -8.615850e-47 |
| Msa0208400 | Msa0836510 | 0.807688 | 4.472819e-50 | -8.615850e-47 |
| Msa0208400 | Msa0866960 | 0.804151 | 2.478434e-49 | -8.615850e-47 |
| Msa0208400 | Msa0868140 | 0.806844 | 6.751803e-50 | -8.615850e-47 |
| Msa0208400 | Msa0930090 | 0.803615 | 3.203679e-49 | -8.615850e-47 |
| Msa0208400 | Msa0938190 | 0.817497 | 3.197620e-52 | -8.615850e-47 |
| Msa0208400 | Msa0951630 | 0.840568 | 8.038722e-58 | -8.615850e-47 |
| Msa0208400 | Msa0968010 | 0.816464 | 5.454964e-52 | -8.615850e-47 |
| Msa0208400 | Msa0982810 | 0.823883 | 1.089515e-53 | -8.615850e-47 |
| Msa0208400 | Msa0988420 | 0.810862 | 9.333406e-51 | -8.615850e-47 |
| Msa0208400 | Msa0998900 | 0.821029 | 5.015868e-53 | -8.615850e-47 |
| Msa0208400 | Msa1008960 | 0.817218 | 3.694925e-52 | -8.615850e-47 |
| Msa0208400 | Msa1018720 | 0.838612 | 2.593083e-57 | -8.615850e-47 |
| Msa0208400 | Msa1018730 | 0.847324 | 1.242617e-59 | -8.615850e-47 |
| Msa0208400 | Msa1025600 | 0.821658 | 3.592440e-53 | -8.615850e-47 |
| Msa0208400 | Msa1025630 | 0.818060 | 2.386625e-52 | -8.615850e-47 |
| Msa0208400 | Msa1025650 | 0.801841 | 7.442398e-49 | -8.615850e-47 |
| Msa0208400 | Msa1031220 | 0.807639 | 4.581891e-50 | -8.615850e-47 |
| Msa0208400 | Msa1038420 | 0.854262 | 1.383442e-61 | -8.615850e-47 |
| Msa0208400 | Msa1042380 | 0.825168 | 5.429176e-54 | -8.615850e-47 |
| Msa0208400 | Msa1044450 | 0.829353 | 5.398293e-55 | -8.615850e-47 |
| Msa0208400 | Msa1050320 | 0.803982 | 2.687249e-49 | -8.615850e-47 |
| Msa0208400 | Msa1064440 | 0.813708 | 2.232295e-51 | -8.615850e-47 |
| Msa0208400 | Msa1103610 | 0.850124 | 2.080190e-60 | -8.615850e-47 |
| Msa0208400 | Msa1122920 | 0.804983 | 1.662498e-49 | -8.615850e-47 |
| Msa0208400 | Msa1125100 | 0.811007 | 8.680318e-51 | -8.615850e-47 |
| Msa0208400 | Msa1125150 | 0.812000 | 5.282979e-51 | -8.615850e-47 |
| Msa0208400 | Msa1129320 | 0.874808 | 5.054841e-68 | -8.615850e-47 |
| Msa0208400 | Msa1147190 | 0.846458 | 2.145481e-59 | -8.615850e-47 |
| Msa0208400 | Msa1147200 | 0.841094 | 5.853017e-58 | -8.615850e-47 |
| Msa0208400 | Msa1151970 | 0.822099 | 2.839257e-53 | -8.615850e-47 |
| Msa0208400 | Msa1172070 | 0.809294 | 2.031560e-50 | -8.615850e-47 |
| Msa0208400 | Msa1172120 | 0.807457 | 5.009096e-50 | -8.615850e-47 |
| Msa0208400 | Msa1177360 | 0.804774 | 1.838391e-49 | -8.615850e-47 |
| Msa0208400 | Msa1178470 | 0.809632 | 1.719211e-50 | -8.615850e-47 |
| Msa0208400 | Msa1203210 | 0.819159 | 1.344754e-52 | -8.615850e-47 |
| Msa0208400 | Msa1203720 | 0.801523 | 8.651211e-49 | -8.615850e-47 |
| Msa0208400 | Msa1204390 | 0.810845 | 9.411516e-51 | -8.615850e-47 |
| Msa0208400 | Msa1208250 | 0.802230 | 6.192805e-49 | -8.615850e-47 |
| Msa0208400 | Msa1217020 | 0.813618 | 2.336414e-51 | -8.615850e-47 |
| Msa0208400 | Msa1217170 | 0.830995 | 2.144429e-55 | -8.615850e-47 |
| Msa0208400 | Msa1236740 | 0.831121 | 1.997479e-55 | -8.615850e-47 |
| Msa0208400 | Msa1262630 | 0.809248 | 2.077838e-50 | -8.615850e-47 |
| Msa0208400 | Msa1264230 | 0.821208 | 4.563235e-53 | -8.615850e-47 |
| Msa0208400 | Msa1296610 | 0.812291 | 4.564153e-51 | -8.615850e-47 |
| Msa0208400 | Msa1302920 | 0.823133 | 1.631952e-53 | -8.615850e-47 |
| Msa0208400 | Msa1329020 | 0.809717 | 1.647962e-50 | -8.615850e-47 |
| Msa0208400 | Msa1330900 | 0.808630 | 2.818087e-50 | -8.615850e-47 |
| Msa0208400 | Msa1343540 | 0.815100 | 1.098999e-51 | -8.615850e-47 |
| Msa0208400 | Msa1344870 | 0.811892 | 5.575971e-51 | -8.615850e-47 |
| Msa0208400 | Msa1344880 | 0.806391 | 8.414772e-50 | -8.615850e-47 |
| Msa0208400 | Msa1346920 | 0.815765 | 7.817586e-52 | -8.615850e-47 |
| Msa0208400 | Msa1351560 | 0.826754 | 2.280088e-54 | -8.615850e-47 |
| Msa0208400 | Msa1357380 | 0.806841 | 6.762512e-50 | -8.615850e-47 |
| Msa0208400 | Msa1371840 | 0.814176 | 1.760526e-51 | -8.615850e-47 |
| Msa0208400 | Msa1379070 | 0.809806 | 1.577459e-50 | -8.615850e-47 |
| Msa0208400 | Msa1379090 | 0.812902 | 3.355849e-51 | -8.615850e-47 |
| Msa0208400 | Msa1391600 | 0.829039 | 6.433101e-55 | -8.615850e-47 |
| Msa0208400 | Msa1392990 | 0.800154 | 1.646398e-48 | -8.615850e-47 |
| Msa0208400 | Msa1397550 | 0.843252 | 1.570633e-58 | -8.615850e-47 |
| Msa0208400 | Msa1419040 | 0.829221 | 5.810926e-55 | -8.615850e-47 |
| Msa0208400 | Msa1433380 | 0.806839 | 6.767805e-50 | -8.615850e-47 |
| Msa0208400 | Msa1439160 | 0.821776 | 3.372854e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208400 | MtrunA17_Chr2g0307131 | 91.922 | 359 | 24 | 2 | 1 | 358 | 1 | 355 | 0.0 | 639 |
| Msa0208400 | MtrunA17_Chr2g0307141 | 88.736 | 364 | 32 | 4 | 1 | 359 | 1 | 360 | 0.0 | 597 |
| Msa0208400 | MtrunA17_Chr6g0468491 | 70.588 | 340 | 71 | 5 | 23 | 359 | 1 | 314 | 3.34e-163 | 459 |
| Msa0208400 | MtrunA17_Chr4g0033391 | 66.295 | 359 | 79 | 7 | 1 | 357 | 1 | 319 | 6.68e-152 | 431 |
| Msa0208400 | MtrunA17_Chr6g0468461 | 64.841 | 347 | 86 | 5 | 1 | 342 | 1 | 316 | 6.07e-143 | 409 |
| Msa0208400 | MtrunA17_Chr4g0033291 | 64.800 | 375 | 70 | 9 | 1 | 359 | 1 | 329 | 5.05e-142 | 405 |
| Msa0208400 | MtrunA17_Chr4g0033281 | 64.075 | 373 | 71 | 6 | 1 | 358 | 1 | 325 | 1.17e-139 | 400 |
| Msa0208400 | MtrunA17_Chr4g0054581 | 60.825 | 388 | 114 | 9 | 1 | 359 | 1 | 379 | 1.79e-138 | 399 |
| Msa0208400 | MtrunA17_Chr4g0054621 | 50.949 | 369 | 144 | 10 | 1 | 359 | 1 | 342 | 5.46e-106 | 314 |
| Msa0208400 | MtrunA17_Chr7g0225901 | 62.992 | 254 | 62 | 4 | 86 | 334 | 14 | 240 | 1.11e-101 | 300 |
| Msa0208400 | MtrunA17_Chr5g0400621 | 40.556 | 360 | 150 | 8 | 17 | 358 | 20 | 333 | 5.76e-64 | 206 |
| Msa0208400 | MtrunA17_Chr5g0400641 | 56.875 | 160 | 61 | 2 | 185 | 340 | 1 | 156 | 2.43e-50 | 166 |
| Msa0208400 | MtrunA17_Chr2g0280161 | 45.320 | 203 | 104 | 3 | 162 | 357 | 151 | 353 | 1.70e-48 | 167 |
| Msa0208400 | MtrunA17_Chr4g0002801 | 39.044 | 251 | 132 | 4 | 112 | 355 | 95 | 331 | 1.24e-46 | 161 |
| Msa0208400 | MtrunA17_Chr5g0400661 | 34.444 | 360 | 184 | 10 | 10 | 350 | 4 | 330 | 3.05e-46 | 160 |
| Msa0208400 | MtrunA17_Chr4g0054551 | 38.247 | 251 | 136 | 4 | 115 | 349 | 73 | 320 | 6.76e-44 | 154 |
| Msa0208400 | MtrunA17_Chr4g0054561 | 36.452 | 310 | 159 | 9 | 70 | 349 | 19 | 320 | 1.62e-43 | 153 |
| Msa0208400 | MtrunA17_Chr4g0002781 | 38.554 | 249 | 136 | 4 | 114 | 355 | 112 | 350 | 3.98e-43 | 152 |
| Msa0208400 | MtrunA17_Chr2g0333641 | 38.136 | 236 | 130 | 6 | 127 | 349 | 70 | 302 | 1.47e-42 | 150 |
| Msa0208400 | MtrunA17_Chr2g0333621 | 37.344 | 241 | 141 | 4 | 121 | 358 | 82 | 315 | 9.63e-42 | 148 |
| Msa0208400 | MtrunA17_Chr4g0049331 | 43.575 | 179 | 101 | 0 | 172 | 350 | 125 | 303 | 3.64e-41 | 146 |
| Msa0208400 | MtrunA17_Chr8g0336681 | 32.468 | 308 | 165 | 7 | 84 | 355 | 36 | 336 | 8.01e-40 | 144 |
| Msa0208400 | MtrunA17_Chr4g0054571 | 45.500 | 200 | 94 | 4 | 162 | 350 | 130 | 325 | 4.11e-39 | 141 |
| Msa0208400 | MtrunA17_Chr5g0400671 | 35.743 | 249 | 146 | 4 | 114 | 351 | 75 | 320 | 7.89e-38 | 138 |
| Msa0208400 | MtrunA17_Chr2g0333541 | 35.821 | 268 | 155 | 5 | 100 | 353 | 3 | 267 | 6.52e-36 | 132 |
| Msa0208400 | MtrunA17_Chr7g0249811 | 39.487 | 195 | 108 | 2 | 161 | 355 | 145 | 329 | 1.40e-35 | 132 |
| Msa0208400 | MtrunA17_Chr2g0333611 | 33.945 | 218 | 140 | 3 | 140 | 356 | 3 | 217 | 6.44e-35 | 127 |
| Msa0208400 | MtrunA17_Chr4g0002851 | 36.601 | 153 | 65 | 2 | 205 | 350 | 65 | 192 | 9.45e-23 | 94.4 |
| Msa0208400 | MtrunA17_Chr4g0002831 | 37.126 | 167 | 77 | 5 | 193 | 350 | 53 | 200 | 1.54e-22 | 94.0 |
| Msa0208400 | MtrunA17_Chr7g0233441 | 36.986 | 146 | 82 | 2 | 205 | 350 | 57 | 192 | 2.36e-22 | 93.2 |
| Msa0208400 | MtrunA17_Chr1g0185621 | 33.103 | 145 | 83 | 3 | 182 | 315 | 475 | 616 | 1.49e-18 | 87.0 |
| Msa0208400 | MtrunA17_Chr8g0366751 | 33.939 | 165 | 95 | 3 | 168 | 318 | 445 | 609 | 3.37e-17 | 83.2 |
| Msa0208400 | MtrunA17_Chr8g0346161 | 33.088 | 136 | 82 | 3 | 182 | 311 | 291 | 423 | 1.35e-15 | 77.8 |
| Msa0208400 | MtrunA17_Chr5g0411341 | 32.402 | 179 | 79 | 6 | 168 | 318 | 476 | 640 | 2.57e-15 | 77.4 |
| Msa0208400 | MtrunA17_Chr8g0365711 | 25.946 | 185 | 110 | 4 | 161 | 331 | 227 | 398 | 8.70e-14 | 72.0 |
| Msa0208400 | MtrunA17_Chr7g0275821 | 30.435 | 161 | 100 | 3 | 179 | 335 | 245 | 397 | 1.99e-13 | 70.9 |
| Msa0208400 | MtrunA17_Chr7g0260841 | 43.333 | 90 | 42 | 2 | 155 | 235 | 319 | 408 | 6.80e-13 | 69.7 |
| Msa0208400 | MtrunA17_Chr8g0346151 | 34.188 | 117 | 67 | 3 | 182 | 291 | 279 | 392 | 1.46e-12 | 68.6 |
| Msa0208400 | MtrunA17_Chr1g0211081 | 26.606 | 218 | 128 | 6 | 133 | 318 | 264 | 481 | 3.39e-12 | 67.4 |
| Msa0208400 | MtrunA17_Chr8g0386921 | 39.726 | 73 | 44 | 0 | 174 | 246 | 398 | 470 | 8.60e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208400 | AT4G37850.2 | 43.814 | 194 | 106 | 2 | 166 | 357 | 136 | 328 | 3.09e-42 | 150 |
| Msa0208400 | AT4G37850.1 | 43.814 | 194 | 106 | 2 | 166 | 357 | 136 | 328 | 3.09e-42 | 150 |
| Msa0208400 | AT2G22760.1 | 34.364 | 291 | 152 | 7 | 86 | 350 | 14 | 291 | 1.95e-38 | 139 |
| Msa0208400 | AT2G22750.2 | 46.032 | 189 | 96 | 2 | 166 | 349 | 110 | 297 | 3.76e-37 | 136 |
| Msa0208400 | AT2G22750.3 | 46.032 | 189 | 96 | 2 | 166 | 349 | 138 | 325 | 4.23e-37 | 137 |
| Msa0208400 | AT2G22750.5 | 46.032 | 189 | 96 | 2 | 166 | 349 | 134 | 321 | 4.45e-37 | 136 |
| Msa0208400 | AT2G22750.4 | 46.032 | 189 | 95 | 3 | 166 | 349 | 138 | 324 | 6.10e-36 | 133 |
| Msa0208400 | AT2G22750.1 | 46.032 | 189 | 95 | 3 | 166 | 349 | 110 | 296 | 6.14e-36 | 133 |
| Msa0208400 | AT2G22760.2 | 33.942 | 274 | 143 | 6 | 86 | 334 | 14 | 274 | 6.13e-34 | 127 |
| Msa0208400 | AT2G22770.1 | 33.077 | 260 | 120 | 7 | 120 | 350 | 81 | 315 | 9.05e-32 | 122 |
| Msa0208400 | AT5G46760.1 | 32.394 | 213 | 111 | 8 | 151 | 338 | 388 | 592 | 1.82e-18 | 87.0 |
| Msa0208400 | AT4G17880.1 | 35.802 | 162 | 86 | 5 | 168 | 315 | 399 | 556 | 2.43e-17 | 84.0 |
| Msa0208400 | AT1G32640.1 | 32.704 | 159 | 95 | 4 | 168 | 318 | 435 | 589 | 2.60e-16 | 80.9 |
| Msa0208400 | AT1G01260.1 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.74e-14 | 75.1 |
| Msa0208400 | AT1G01260.2 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.74e-14 | 75.1 |
| Msa0208400 | AT1G01260.3 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.74e-14 | 75.1 |
| Msa0208400 | AT1G63650.3 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 2.31e-14 | 74.7 |
| Msa0208400 | AT1G63650.1 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 2.31e-14 | 74.7 |
| Msa0208400 | AT1G63650.2 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 2.31e-14 | 74.7 |
| Msa0208400 | AT2G46510.1 | 45.000 | 80 | 39 | 2 | 168 | 244 | 378 | 455 | 1.09e-13 | 72.8 |
| Msa0208400 | AT4G16430.1 | 46.154 | 78 | 39 | 1 | 168 | 242 | 303 | 380 | 1.97e-13 | 71.6 |
| Msa0208400 | AT4G09820.1 | 33.333 | 126 | 54 | 3 | 183 | 303 | 364 | 464 | 3.75e-13 | 70.9 |
| Msa0208400 | AT5G41315.3 | 28.495 | 186 | 100 | 6 | 172 | 330 | 437 | 616 | 1.69e-12 | 68.9 |
| Msa0208400 | AT5G41315.1 | 28.495 | 186 | 100 | 6 | 172 | 330 | 432 | 611 | 1.80e-12 | 68.9 |
| Msa0208400 | AT5G41315.2 | 28.495 | 186 | 100 | 6 | 172 | 330 | 440 | 619 | 2.00e-12 | 68.9 |
| Msa0208400 | AT4G00870.1 | 33.036 | 112 | 72 | 1 | 183 | 291 | 250 | 361 | 3.60e-11 | 64.7 |
| Msa0208400 | AT1G12860.1 | 28.889 | 180 | 107 | 6 | 183 | 349 | 268 | 439 | 5.89e-11 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTAGTGGTAGGTGAATT+TGG | 0.153287 | 2_1:+43114339 | None:intergenic |
| CAAATCGAAGCAAAAGTATT+AGG | 0.159030 | 2_1:-43113744 | Msa0208400:CDS |
| AACTAGTGGTAGGTGAATTT+GGG | 0.226459 | 2_1:+43114340 | None:intergenic |
| TCTTGTTCCCAACCTTAAAA+AGG | 0.269180 | 2_1:-43114112 | Msa0208400:intron |
| AGTGGTTTGCATCTTCTTAT+AGG | 0.285856 | 2_1:+43113222 | None:intergenic |
| CAGCAGCTGGTTATCTGATT+TGG | 0.298434 | 2_1:-43115902 | Msa0208400:intron |
| CGATATTGATAAGACAATTA+TGG | 0.305371 | 2_1:-43114460 | Msa0208400:CDS |
| TTCAGTGTCTCCAACTGAAT+TGG | 0.327767 | 2_1:-43114262 | Msa0208400:CDS |
| CACCAGTATCAAGGAAATTC+AGG | 0.328339 | 2_1:+43114619 | None:intergenic |
| TAAGATAATACTATGTATAT+TGG | 0.331197 | 2_1:-43113178 | Msa0208400:three_prime_UTR |
| AAATCGAAGCAAAAGTATTA+GGG | 0.346642 | 2_1:-43113743 | Msa0208400:CDS |
| CTGCAAGAGCAATGAAGCTT+TGG | 0.357341 | 2_1:+43114136 | None:intergenic |
| AAGTGTTACTGTTGAGACTA+TGG | 0.367734 | 2_1:-43115962 | Msa0208400:exon |
| AAACAACAACGTTTAACTTC+GGG | 0.382774 | 2_1:-43114546 | Msa0208400:CDS |
| TGCATGGATAAATTATGTTT+AGG | 0.407641 | 2_1:-43113089 | Msa0208400:three_prime_UTR |
| AACCTGAATTTCCTTGATAC+TGG | 0.413104 | 2_1:-43114621 | Msa0208400:CDS |
| AAAAGGTCTCGTGCTAATAA+TGG | 0.413380 | 2_1:-43114204 | Msa0208400:CDS |
| CAAAAGATGGGATTTGAACT+TGG | 0.429625 | 2_1:+43114370 | None:intergenic |
| TAGGGAAATATATGTTGATT+CGG | 0.431533 | 2_1:-43113725 | Msa0208400:CDS |
| TCATCATCGCTGCAGAGGTC+TGG | 0.452669 | 2_1:+43113816 | None:intergenic |
| TAAACAACAACGTTTAACTT+CGG | 0.458515 | 2_1:-43114547 | Msa0208400:CDS |
| TGCAAGAGCAATGAAGCTTT+GGG | 0.460124 | 2_1:+43114137 | None:intergenic |
| GTCCCTTGTGTTCCTTACAT+TGG | 0.460906 | 2_1:+43113700 | None:intergenic |
| ATCGCTGCAGAGGTCTGGTT+TGG | 0.461442 | 2_1:+43113821 | None:intergenic |
| GGTCAAATCCAGAAAATTGT+TGG | 0.469734 | 2_1:+43114316 | None:intergenic |
| TGATATTACTATCATTGCTC+AGG | 0.480526 | 2_1:-43113592 | Msa0208400:intron |
| ATTTAGTGATGAAACAAAGT+TGG | 0.485603 | 2_1:-43114496 | Msa0208400:CDS |
| GTCAAATCCAGAAAATTGTT+GGG | 0.487558 | 2_1:+43114317 | None:intergenic |
| GAGCGCAATGAAAGTGTTGT+TGG | 0.490652 | 2_1:-43113777 | Msa0208400:CDS |
| GTTGATTCGGATCCAATGTA+AGG | 0.498122 | 2_1:-43113712 | Msa0208400:CDS |
| CGAACACAATTTATTTGTTG+AGG | 0.507704 | 2_1:-43114649 | Msa0208400:CDS |
| AATCTTCCACACCAGTATCA+AGG | 0.520277 | 2_1:+43114610 | None:intergenic |
| GATATCATTTATCGAAAATG+AGG | 0.521059 | 2_1:+43113251 | None:intergenic |
| GAGCAATGATAGTAATATCA+AGG | 0.524666 | 2_1:+43113595 | None:intergenic |
| TAATTTATCCATGCATCGCA+CGG | 0.539154 | 2_1:+43113097 | None:intergenic |
| ACTAGTGGTAGGTGAATTTG+GGG | 0.540705 | 2_1:+43114341 | None:intergenic |
| TCAAGGATTGAATCTCCAAA+GGG | 0.541373 | 2_1:+43113612 | None:intergenic |
| AGAAAATTGTTGGGAACTAG+TGG | 0.549969 | 2_1:+43114326 | None:intergenic |
| GTATCTACCCGTGCGATGCA+TGG | 0.551129 | 2_1:-43113105 | Msa0208400:three_prime_UTR |
| ACGTATCATCAAGCAGCAGC+TGG | 0.560203 | 2_1:-43115915 | Msa0208400:CDS |
| TAATGGTGAGGATCATATCA+TGG | 0.568755 | 2_1:-43114187 | Msa0208400:CDS |
| ATCAAGGATTGAATCTCCAA+AGG | 0.576697 | 2_1:+43113611 | None:intergenic |
| AATTTATCCATGCATCGCAC+GGG | 0.600301 | 2_1:+43113098 | None:intergenic |
| AACAACAACGTTTAACTTCG+GGG | 0.603388 | 2_1:-43114545 | Msa0208400:CDS |
| ATTGCGCTCATCAAATGATG+AGG | 0.605739 | 2_1:+43113791 | None:intergenic |
| AATTGTTGGGAACTAGTGGT+AGG | 0.606056 | 2_1:+43114330 | None:intergenic |
| GTCTCGTGCTAATAATGGTG+AGG | 0.616632 | 2_1:-43114199 | Msa0208400:CDS |
| GAATTTCCTTGATACTGGTG+TGG | 0.624759 | 2_1:-43114616 | Msa0208400:CDS |
| AGGAATCATCATCGCTGCAG+AGG | 0.642820 | 2_1:+43113811 | None:intergenic |
| GATCCAATGTAAGGAACACA+AGG | 0.646884 | 2_1:-43113703 | Msa0208400:CDS |
| ACTTGTGAAGAACATACGCA+AGG | 0.658289 | 2_1:-43113325 | Msa0208400:CDS |
| TCATCATAATAACATGAACA+TGG | 0.660733 | 2_1:-43113285 | Msa0208400:exon |
| TAGTGGTAGGTGAATTTGGG+GGG | 0.663891 | 2_1:+43114343 | None:intergenic |
| TATATACTGAATTTAAAACA+AGG | 0.682236 | 2_1:+43115984 | None:intergenic |
| GTTGCTGAGAGTTGTGCAAG+TGG | 0.691092 | 2_1:+43114521 | None:intergenic |
| TGTTACTGTTGAGACTATGG+AGG | 0.705682 | 2_1:-43115959 | Msa0208400:exon |
| ATCCAATGTAAGGAACACAA+GGG | 0.769724 | 2_1:-43113702 | Msa0208400:CDS |
| CTAGTGGTAGGTGAATTTGG+GGG | 0.803417 | 2_1:+43114342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAATAAAAAATGTGA+AGG | - | chr2_1:43113459-43113478 | Msa0208400:intron | 10.0% |
| !! | GTATTTATTCAATTTAAAAA+GGG | + | chr2_1:43113796-43113815 | None:intergenic | 10.0% |
| !! | TGTATTTATTCAATTTAAAA+AGG | + | chr2_1:43113797-43113816 | None:intergenic | 10.0% |
| !! | GTAATATGAAAAAAAAAAAT+AGG | + | chr2_1:43114987-43115006 | None:intergenic | 10.0% |
| !!! | AATCTTAATTATTTTATAGT+TGG | - | chr2_1:43115605-43115624 | Msa0208400:intron | 10.0% |
| !!! | ATCTTAATTATTTTATAGTT+GGG | - | chr2_1:43115606-43115625 | Msa0208400:intron | 10.0% |
| !!! | TATATACTGAATTTAAAACA+AGG | + | chr2_1:43113000-43113019 | None:intergenic | 15.0% |
| !!! | ATAGTTAGACTTTTTTAAAA+TGG | + | chr2_1:43113561-43113580 | None:intergenic | 15.0% |
| !! | ATAAATACAACAACAAAAAA+TGG | - | chr2_1:43113808-43113827 | Msa0208400:CDS | 15.0% |
| !! | ATTTAATATGTCATAAGAAA+TGG | - | chr2_1:43113860-43113879 | Msa0208400:CDS | 15.0% |
| !!! | AAATTAAAGTATTTTATTCC+AGG | - | chr2_1:43115497-43115516 | Msa0208400:intron | 15.0% |
| !! | AATATATCAAGCAAATATAT+TGG | + | chr2_1:43115529-43115548 | None:intergenic | 15.0% |
| !! | TAAGATAATACTATGTATAT+TGG | - | chr2_1:43115803-43115822 | Msa0208400:intron | 15.0% |
| !!! | TTTTTATCGTTTTTCTTTTT+TGG | - | chr2_1:43115845-43115864 | Msa0208400:intron | 15.0% |
| !!! | AACATGTAAAAACATTCTTT+TGG | + | chr2_1:43113686-43113705 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGAGTTTA+AGG | + | chr2_1:43114694-43114713 | None:intergenic | 20.0% |
| !!! | TTACTTATTGTACCTTTTTA+AGG | + | chr2_1:43114884-43114903 | None:intergenic | 20.0% |
| !! | TTGTGTAAAATTATGTTAGA+TGG | - | chr2_1:43115023-43115042 | Msa0208400:intron | 20.0% |
| !!! | TTTTGTTGCAATTTAAAGAT+AGG | + | chr2_1:43115440-43115459 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTCTTTGAATTT+TGG | - | chr2_1:43115550-43115569 | Msa0208400:intron | 20.0% |
| !! | AAGAATTTAAAAAGAAACAG+TGG | + | chr2_1:43115780-43115799 | None:intergenic | 20.0% |
| !!! | TATCTGATTTGGTAAGAAAA+TGG | - | chr2_1:43113090-43113109 | Msa0208400:three_prime_UTR | 25.0% |
| ! | ACTTAGGGATATTATGTATT+AGG | + | chr2_1:43113274-43113293 | None:intergenic | 25.0% |
| ! | CAATTATTAAGAATATCGAC+AGG | - | chr2_1:43113334-43113353 | Msa0208400:CDS | 25.0% |
| !!! | GTTTTCTTCTGTACTTTTTA+CGG | - | chr2_1:43113413-43113432 | Msa0208400:intron | 25.0% |
| !!! | ACGGTAAACAATTCATTTTT+CGG | - | chr2_1:43113432-43113451 | Msa0208400:intron | 25.0% |
| !!! | TTAATTTGTTGACCTATTAC+CGG | - | chr2_1:43113533-43113552 | Msa0208400:intron | 25.0% |
| !!! | AGACTTTTTTAAAATGGATC+CGG | + | chr2_1:43113555-43113574 | None:intergenic | 25.0% |
| ! | ATTTGTCCATGACAATATTT+GGG | + | chr2_1:43113635-43113654 | None:intergenic | 25.0% |
| ! | AATTTGTCCATGACAATATT+TGG | + | chr2_1:43113636-43113655 | None:intergenic | 25.0% |
| !!! | TCTATACTGTTTTAGAGATA+GGG | + | chr2_1:43113889-43113908 | None:intergenic | 25.0% |
| !!! | ATCTATACTGTTTTAGAGAT+AGG | + | chr2_1:43113890-43113909 | None:intergenic | 25.0% |
| ! | TTATTATTGAAGTGTGTTAG+AGG | - | chr2_1:43114001-43114020 | Msa0208400:intron | 25.0% |
| ! | TTATTTAAGAGATATTGCCA+GGG | + | chr2_1:43114044-43114063 | None:intergenic | 25.0% |
| !!! | TCTCACTAGTGTTTTTTTAT+AGG | + | chr2_1:43114135-43114154 | None:intergenic | 25.0% |
| ! | TGCACATGTTAATAAATTCA+AGG | + | chr2_1:43114193-43114212 | None:intergenic | 25.0% |
| ! | CGTAGTTAATCACAAATAAA+TGG | - | chr2_1:43114249-43114268 | Msa0208400:CDS | 25.0% |
| !!! | GTTGTTGTTTATTTTGTTCT+TGG | + | chr2_1:43114425-43114444 | None:intergenic | 25.0% |
| !! | TAAACAACAACGTTTAACTT+CGG | - | chr2_1:43114434-43114453 | Msa0208400:CDS | 25.0% |
| ! | ATTTAGTGATGAAACAAAGT+TGG | - | chr2_1:43114485-43114504 | Msa0208400:CDS | 25.0% |
| ! | CGATATTGATAAGACAATTA+TGG | - | chr2_1:43114521-43114540 | Msa0208400:CDS | 25.0% |
| !! | TGAAGAAAGTTTTTGTGTAA+AGG | + | chr2_1:43114586-43114605 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAGTTTAAGGT+GGG | + | chr2_1:43114690-43114709 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGAGTTTAAGG+TGG | + | chr2_1:43114691-43114710 | None:intergenic | 25.0% |
| !!! | TTCTTATTTTCCAATTCAGT+TGG | + | chr2_1:43114732-43114751 | None:intergenic | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+GGG | + | chr2_1:43114879-43114898 | None:intergenic | 25.0% |
| !!! | TTATTGTACCTTTTTAAGGT+TGG | + | chr2_1:43114880-43114899 | None:intergenic | 25.0% |
| !!! | AAATCGAAGCAAAAGTATTA+GGG | - | chr2_1:43115238-43115257 | Msa0208400:intron | 25.0% |
| !! | TAGGGAAATATATGTTGATT+CGG | - | chr2_1:43115256-43115275 | Msa0208400:intron | 25.0% |
| !!! | GGGACTTTTAGTTAAAATTA+TGG | - | chr2_1:43115299-43115318 | Msa0208400:intron | 25.0% |
| ! | TTGCAATTTAAAGATAGGTA+GGG | + | chr2_1:43115435-43115454 | None:intergenic | 25.0% |
| !!! | TTTCACCACTTTTTAACTTT+TGG | - | chr2_1:43115466-43115485 | Msa0208400:intron | 25.0% |
| ! | TGATACCAAAAGTTAAAAAG+TGG | + | chr2_1:43115474-43115493 | None:intergenic | 25.0% |
| ! | CAAATATATTGGAAAAAACC+TGG | + | chr2_1:43115518-43115537 | None:intergenic | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | - | chr2_1:43115612-43115631 | Msa0208400:intron | 25.0% |
| ! | TCATCATAATAACATGAACA+TGG | - | chr2_1:43115696-43115715 | Msa0208400:intron | 25.0% |
| ! | GATATCATTTATCGAAAATG+AGG | + | chr2_1:43115733-43115752 | None:intergenic | 25.0% |
| ! | TGCATGGATAAATTATGTTT+AGG | - | chr2_1:43115892-43115911 | Msa0208400:intron | 25.0% |
| ! | CTCAACTTGAAATATTTTGC+AGG | + | chr2_1:43113155-43113174 | None:intergenic | 30.0% |
| GTTATAAACGTACTACGAAA+TGG | + | chr2_1:43113202-43113221 | None:intergenic | 30.0% | |
| AATATGAGATGGTCAACTTA+GGG | + | chr2_1:43113289-43113308 | None:intergenic | 30.0% | |
| AAATATGAGATGGTCAACTT+AGG | + | chr2_1:43113290-43113309 | None:intergenic | 30.0% | |
| AAGTTGACCATCTCATATTT+AGG | - | chr2_1:43113290-43113309 | Msa0208400:exon | 30.0% | |
| ATGAGAACCTAAATATGAGA+TGG | + | chr2_1:43113300-43113319 | None:intergenic | 30.0% | |
| TGACATGTTAGTGTTATACT+TGG | + | chr2_1:43113504-43113523 | None:intergenic | 30.0% | |
| ! | TTTAAAATGGATCCGGTAAT+AGG | + | chr2_1:43113548-43113567 | None:intergenic | 30.0% |
| ! | TTTTTCCCCAAATATTGTCA+TGG | - | chr2_1:43113626-43113645 | Msa0208400:CDS | 30.0% |
| TTTGTCCATGACAATATTTG+GGG | + | chr2_1:43113634-43113653 | None:intergenic | 30.0% | |
| GTTATGCTTCTGTATATGAA+CGG | - | chr2_1:43113746-43113765 | Msa0208400:CDS | 30.0% | |
| AACCTAGCGAAAATTAAAGA+TGG | - | chr2_1:43113831-43113850 | Msa0208400:CDS | 30.0% | |
| !! | TTCCATCTTTAATTTTCGCT+AGG | + | chr2_1:43113836-43113855 | None:intergenic | 30.0% |
| AATGTATAAAAAAGTGACCC+TGG | - | chr2_1:43114024-43114043 | Msa0208400:intron | 30.0% | |
| GTTATTTAAGAGATATTGCC+AGG | + | chr2_1:43114045-43114064 | None:intergenic | 30.0% | |
| ! | CGAACACAATTTATTTGTTG+AGG | - | chr2_1:43114332-43114351 | Msa0208400:CDS | 30.0% |
| ! | AAACAACAACGTTTAACTTC+GGG | - | chr2_1:43114435-43114454 | Msa0208400:CDS | 30.0% |
| GTCAAATCCAGAAAATTGTT+GGG | + | chr2_1:43114667-43114686 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGAGTTTAAGGTG+GGG | + | chr2_1:43114689-43114708 | None:intergenic | 30.0% |
| CAAAAACCTCAAAAAGCAAA+AGG | - | chr2_1:43114760-43114779 | Msa0208400:intron | 30.0% | |
| AATAAAAACAGAGTCACATG+TGG | - | chr2_1:43115131-43115150 | Msa0208400:intron | 30.0% | |
| !! | CAAATCGAAGCAAAAGTATT+AGG | - | chr2_1:43115237-43115256 | Msa0208400:intron | 30.0% |
| GAGCAATGATAGTAATATCA+AGG | + | chr2_1:43115389-43115408 | None:intergenic | 30.0% | |
| TGATATTACTATCATTGCTC+AGG | - | chr2_1:43115389-43115408 | Msa0208400:intron | 30.0% | |
| GTTGCAATTTAAAGATAGGT+AGG | + | chr2_1:43115436-43115455 | None:intergenic | 30.0% | |
| ! | AAGTGTTACTGTTGAGACTA+TGG | - | chr2_1:43113019-43113038 | Msa0208400:three_prime_UTR | 35.0% |
| ! | GCAGGAAATTTCAAGTGTTA+AGG | + | chr2_1:43113137-43113156 | None:intergenic | 35.0% |
| GGGATATTATGTATTAGGAG+AGG | + | chr2_1:43113269-43113288 | None:intergenic | 35.0% | |
| !!! | TTAACAGTTCCTTTTTTCCC+AGG | - | chr2_1:43114302-43114321 | Msa0208400:CDS | 35.0% |
| AACCTGAATTTCCTTGATAC+TGG | - | chr2_1:43114360-43114379 | Msa0208400:CDS | 35.0% | |
| ! | AACAACAACGTTTAACTTCG+GGG | - | chr2_1:43114436-43114455 | Msa0208400:CDS | 35.0% |
| CAAAAGATGGGATTTGAACT+TGG | + | chr2_1:43114614-43114633 | None:intergenic | 35.0% | |
| AACTAGTGGTAGGTGAATTT+GGG | + | chr2_1:43114644-43114663 | None:intergenic | 35.0% | |
| AGAAAATTGTTGGGAACTAG+TGG | + | chr2_1:43114658-43114677 | None:intergenic | 35.0% | |
| ! | ACTAGTTCCCAACAATTTTC+TGG | - | chr2_1:43114657-43114676 | Msa0208400:CDS | 35.0% |
| GGTCAAATCCAGAAAATTGT+TGG | + | chr2_1:43114668-43114687 | None:intergenic | 35.0% | |
| AAAAGGTCTCGTGCTAATAA+TGG | - | chr2_1:43114777-43114796 | Msa0208400:intron | 35.0% | |
| TAATGGTGAGGATCATATCA+TGG | - | chr2_1:43114794-43114813 | Msa0208400:intron | 35.0% | |
| TCTTGTTCCCAACCTTAAAA+AGG | - | chr2_1:43114869-43114888 | Msa0208400:intron | 35.0% | |
| GAGCTAGTTAATAGCTATGA+GGG | + | chr2_1:43114917-43114936 | None:intergenic | 35.0% | |
| AGAGCTAGTTAATAGCTATG+AGG | + | chr2_1:43114918-43114937 | None:intergenic | 35.0% | |
| !! | GAAAGAGCTTAAAAAGCGTT+TGG | - | chr2_1:43115083-43115102 | Msa0208400:intron | 35.0% |
| ATCCAATGTAAGGAACACAA+GGG | - | chr2_1:43115279-43115298 | Msa0208400:intron | 35.0% | |
| ! | AATAGCAGTGTTTTACCCTT+TGG | - | chr2_1:43115354-43115373 | Msa0208400:intron | 35.0% |
| TCAAGGATTGAATCTCCAAA+GGG | + | chr2_1:43115372-43115391 | None:intergenic | 35.0% | |
| ATCAAGGATTGAATCTCCAA+AGG | + | chr2_1:43115373-43115392 | None:intergenic | 35.0% | |
| ! | AGTGGTTTGCATCTTCTTAT+AGG | + | chr2_1:43115762-43115781 | None:intergenic | 35.0% |
| TAATTTATCCATGCATCGCA+CGG | + | chr2_1:43115887-43115906 | None:intergenic | 35.0% | |
| TGTTACTGTTGAGACTATGG+AGG | - | chr2_1:43113022-43113041 | Msa0208400:three_prime_UTR | 40.0% | |
| ACTATTGACCAAGCCATTGA+TGG | - | chr2_1:43113911-43113930 | Msa0208400:CDS | 40.0% | |
| !!! | GTTCCTTTTTTCCCAGGAAA+TGG | - | chr2_1:43114308-43114327 | Msa0208400:CDS | 40.0% |
| ATTGTGTTCGTCCATTTCCT+GGG | + | chr2_1:43114322-43114341 | None:intergenic | 40.0% | |
| AATTGTGTTCGTCCATTTCC+TGG | + | chr2_1:43114323-43114342 | None:intergenic | 40.0% | |
| CACCAGTATCAAGGAAATTC+AGG | + | chr2_1:43114365-43114384 | None:intergenic | 40.0% | |
| GAATTTCCTTGATACTGGTG+TGG | - | chr2_1:43114365-43114384 | Msa0208400:CDS | 40.0% | |
| AATCTTCCACACCAGTATCA+AGG | + | chr2_1:43114374-43114393 | None:intergenic | 40.0% | |
| ACTAGTGGTAGGTGAATTTG+GGG | + | chr2_1:43114643-43114662 | None:intergenic | 40.0% | |
| GAACTAGTGGTAGGTGAATT+TGG | + | chr2_1:43114645-43114664 | None:intergenic | 40.0% | |
| AATTGTTGGGAACTAGTGGT+AGG | + | chr2_1:43114654-43114673 | None:intergenic | 40.0% | |
| TTCAGTGTCTCCAACTGAAT+TGG | - | chr2_1:43114719-43114738 | Msa0208400:intron | 40.0% | |
| !!! | ACGAGACCTTTTGCTTTTTG+AGG | + | chr2_1:43114769-43114788 | None:intergenic | 40.0% |
| TGCAAGAGCAATGAAGCTTT+GGG | + | chr2_1:43114847-43114866 | None:intergenic | 40.0% | |
| CATATTACACTGCTCACTGA+TGG | - | chr2_1:43114999-43115018 | Msa0208400:intron | 40.0% | |
| ! | GGACAAGTTTTCTGTACTAG+TGG | - | chr2_1:43115044-43115063 | Msa0208400:intron | 40.0% |
| ATTGCGCTCATCAAATGATG+AGG | + | chr2_1:43115193-43115212 | None:intergenic | 40.0% | |
| !! | GTTGATTCGGATCCAATGTA+AGG | - | chr2_1:43115269-43115288 | Msa0208400:intron | 40.0% |
| GATCCAATGTAAGGAACACA+AGG | - | chr2_1:43115278-43115297 | Msa0208400:intron | 40.0% | |
| ACTTGTGAAGAACATACGCA+AGG | - | chr2_1:43115656-43115675 | Msa0208400:intron | 40.0% | |
| AATTTATCCATGCATCGCAC+GGG | + | chr2_1:43115886-43115905 | None:intergenic | 40.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | - | chr2_1:43113079-43113098 | Msa0208400:three_prime_UTR | 45.0% | |
| !! | AGGAGAGGCATTTGTATGTG+AGG | + | chr2_1:43113254-43113273 | None:intergenic | 45.0% |
| ! | AAAGCTCTGGTGTCCATCAA+TGG | + | chr2_1:43113927-43113946 | None:intergenic | 45.0% |
| TCTGTCTCATCTCAAAGCTC+TGG | + | chr2_1:43113940-43113959 | None:intergenic | 45.0% | |
| CGTCCATTTCCTGGGAAAAA+AGG | + | chr2_1:43114314-43114333 | None:intergenic | 45.0% | |
| TAGTGGTAGGTGAATTTGGG+GGG | + | chr2_1:43114641-43114660 | None:intergenic | 45.0% | |
| CTAGTGGTAGGTGAATTTGG+GGG | + | chr2_1:43114642-43114661 | None:intergenic | 45.0% | |
| GTCTCGTGCTAATAATGGTG+AGG | - | chr2_1:43114782-43114801 | Msa0208400:intron | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | + | chr2_1:43114848-43114867 | None:intergenic | 45.0% | |
| !! | GAGCGCAATGAAAGTGTTGT+TGG | - | chr2_1:43115204-43115223 | Msa0208400:intron | 45.0% |
| GTCCCTTGTGTTCCTTACAT+TGG | + | chr2_1:43115284-43115303 | None:intergenic | 45.0% | |
| !!! | TATTATTTTAAAAAATGAAA+TGG | - | chr2_1:43115931-43115950 | Msa0208400:CDS | 5.0% |
| ACGTATCATCAAGCAGCAGC+TGG | - | chr2_1:43113066-43113085 | Msa0208400:three_prime_UTR | 50.0% | |
| TCTGGTGTCCATCAATGGCT+TGG | + | chr2_1:43113922-43113941 | None:intergenic | 50.0% | |
| GAGATGAGACAGATCGATCG+CGG | - | chr2_1:43113947-43113966 | Msa0208400:intron | 50.0% | |
| GTTGCTGAGAGTTGTGCAAG+TGG | + | chr2_1:43114463-43114482 | None:intergenic | 50.0% | |
| TTGGGGGGCTGTCAAAAGAT+GGG | + | chr2_1:43114626-43114645 | None:intergenic | 50.0% | |
| TTTGGGGGGCTGTCAAAAGA+TGG | + | chr2_1:43114627-43114646 | None:intergenic | 50.0% | |
| AGGAATCATCATCGCTGCAG+AGG | + | chr2_1:43115173-43115192 | None:intergenic | 50.0% | |
| ATCGCTGCAGAGGTCTGGTT+TGG | + | chr2_1:43115163-43115182 | None:intergenic | 55.0% | |
| TCATCATCGCTGCAGAGGTC+TGG | + | chr2_1:43115168-43115187 | None:intergenic | 55.0% | |
| GTATCTACCCGTGCGATGCA+TGG | - | chr2_1:43115876-43115895 | Msa0208400:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 43112975 | 43116028 | 43112975 | ID=Msa0208400;Name=Msa0208400 |
| chr2_1 | mRNA | 43112975 | 43116028 | 43112975 | ID=Msa0208400-mRNA-1;Parent=Msa0208400;Name=Msa0208400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=63|1|1|1|1|1|4|324|359 |
| chr2_1 | exon | 43112975 | 43113379 | 43112975 | ID=Msa0208400-mRNA-1:exon:12844;Parent=Msa0208400-mRNA-1 |
| chr2_1 | exon | 43113593 | 43113961 | 43113593 | ID=Msa0208400-mRNA-1:exon:12843;Parent=Msa0208400-mRNA-1 |
| chr2_1 | exon | 43114113 | 43114679 | 43114113 | ID=Msa0208400-mRNA-1:exon:12842;Parent=Msa0208400-mRNA-1 |
| chr2_1 | exon | 43115903 | 43116028 | 43115903 | ID=Msa0208400-mRNA-1:exon:12841;Parent=Msa0208400-mRNA-1 |
| chr2_1 | five_prime_UTR | 43115966 | 43116028 | 43115966 | ID=Msa0208400-mRNA-1:five_prime_utr;Parent=Msa0208400-mRNA-1 |
| chr2_1 | CDS | 43115903 | 43115965 | 43115903 | ID=Msa0208400-mRNA-1:cds;Parent=Msa0208400-mRNA-1 |
| chr2_1 | CDS | 43114113 | 43114679 | 43114113 | ID=Msa0208400-mRNA-1:cds;Parent=Msa0208400-mRNA-1 |
| chr2_1 | CDS | 43113593 | 43113961 | 43113593 | ID=Msa0208400-mRNA-1:cds;Parent=Msa0208400-mRNA-1 |
| chr2_1 | CDS | 43113299 | 43113379 | 43113299 | ID=Msa0208400-mRNA-1:cds;Parent=Msa0208400-mRNA-1 |
| chr2_1 | three_prime_UTR | 43112975 | 43113298 | 43112975 | ID=Msa0208400-mRNA-1:three_prime_utr;Parent=Msa0208400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
