AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094060 MtrunA17_Chr2g0330781 98.023 354 7 0 1 354 1 354 0.0 712
Msa0094060 MtrunA17_Chr8g0341001 77.054 353 81 0 1 353 2 354 0.0 573
Msa0094060 MtrunA17_Chr2g0320671 59.884 344 137 1 10 353 9 351 3.04e-151 429
Msa0094060 MtrunA17_Chr4g0027521 52.439 328 154 2 28 353 24 351 1.56e-121 354
Msa0094060 MtrunA17_Chr5g0438621 45.283 318 173 1 29 346 28 344 1.39e-99 298
Msa0094060 MtrunA17_Chr3g0120861 44.892 323 177 1 29 351 36 357 8.45e-99 296
Msa0094060 MtrunA17_Chr5g0438641 42.812 320 182 1 29 348 30 348 1.66e-96 290
Msa0094060 MtrunA17_Chr3g0105401 42.493 353 193 5 1 350 2 347 4.58e-96 289
Msa0094060 MtrunA17_Chr1g0156931 42.105 342 193 4 9 348 17 355 6.96e-94 284
Msa0094060 MtrunA17_Chr5g0438631 40.597 335 193 3 23 354 20 351 8.91e-93 281
Msa0094060 MtrunA17_Chr5g0432101 44.127 315 171 4 31 342 33 345 7.80e-90 274
Msa0094060 MtrunA17_Chr5g0405821 40.922 347 199 4 9 350 18 363 4.42e-88 269
Msa0094060 MtrunA17_Chr8g0371491 40.491 326 193 1 25 350 30 354 7.44e-86 263
Msa0094060 MtrunA17_Chr4g0027571 53.636 220 101 1 134 353 3 221 1.33e-85 258
Msa0094060 MtrunA17_Chr1g0156921 38.012 342 207 4 9 348 20 358 8.29e-85 261
Msa0094060 MtrunA17_Chr8g0371471 38.941 321 195 1 30 350 40 359 1.23e-83 258
Msa0094060 MtrunA17_Chr2g0283191 38.710 341 197 6 7 337 14 352 1.42e-83 258
Msa0094060 MtrunA17_Chr4g0046151 38.973 331 185 5 31 346 36 364 1.43e-83 258
Msa0094060 MtrunA17_Chr1g0156901 38.663 344 209 2 5 348 24 365 3.47e-83 257
Msa0094060 MtrunA17_Chr5g0405831 37.861 346 210 3 9 350 18 362 3.71e-82 254
Msa0094060 MtrunA17_Chr8g0371481 38.080 323 198 2 30 351 40 361 7.29e-82 253
Msa0094060 MtrunA17_Chr1g0156891 39.564 321 191 3 29 348 41 359 1.92e-80 249
Msa0094060 MtrunA17_Chr3g0142921 38.820 322 194 3 30 350 35 354 3.01e-80 249
Msa0094060 MtrunA17_Chr1g0156911 39.365 315 185 4 30 342 36 346 3.86e-80 249
Msa0094060 MtrunA17_Chr3g0142941 39.628 323 193 2 26 348 42 362 2.20e-79 247
Msa0094060 MtrunA17_Chr1g0157001 39.423 312 183 5 36 345 41 348 2.57e-70 224
Msa0094060 MtrunA17_Chr1g0182811 39.172 314 178 6 31 337 33 340 2.58e-69 221
Msa0094060 MtrunA17_Chr5g0437421 36.036 333 195 6 29 350 30 355 5.40e-68 218
Msa0094060 MtrunA17_Chr6g0457921 35.673 342 211 8 10 346 7 344 1.02e-63 207
Msa0094060 MtrunA17_Chr7g0275021 35.671 328 202 7 23 346 26 348 2.32e-63 206
Msa0094060 MtrunA17_Chr2g0285061 36.522 345 203 10 3 342 9 342 4.72e-63 205
Msa0094060 MtrunA17_Chr7g0275001 34.473 351 216 7 1 347 1 341 5.23e-63 204
Msa0094060 MtrunA17_Chr7g0274991 34.940 332 198 9 26 346 23 347 6.59e-63 204
Msa0094060 MtrunA17_Chr8g0374101 34.891 321 199 6 35 347 41 359 1.01e-62 204
Msa0094060 MtrunA17_Chr7g0275011 35.938 320 196 7 31 346 34 348 1.82e-62 204
Msa0094060 MtrunA17_Chr8g0380041 36.070 341 202 8 9 342 9 340 5.84e-62 202
Msa0094060 MtrunA17_Chr1g0189901 35.220 318 199 6 31 345 31 344 7.96e-62 202
Msa0094060 MtrunA17_Chr7g0229581 59.060 149 60 1 205 353 7 154 1.69e-61 194
Msa0094060 MtrunA17_Chr7g0229591 50.000 194 97 0 11 204 10 203 5.13e-61 194
Msa0094060 MtrunA17_Chr4g0008851 34.188 351 217 10 2 346 6 348 1.16e-60 199
Msa0094060 MtrunA17_Chr1g0189931 35.119 336 206 8 15 346 19 346 1.18e-60 199
Msa0094060 MtrunA17_Chr2g0294301 34.675 323 203 6 29 347 33 351 1.32e-60 199
Msa0094060 MtrunA17_Chr3g0086641 34.706 340 208 9 10 342 15 347 2.30e-58 193
Msa0094060 MtrunA17_Chr1g0189891 36.170 329 192 9 31 353 29 345 4.16e-58 192
Msa0094060 MtrunA17_Chr4g0068441 33.807 352 206 9 9 349 18 353 1.92e-57 190
Msa0094060 MtrunA17_Chr5g0396511 32.692 312 203 6 34 342 49 356 5.48e-57 189
Msa0094060 MtrunA17_Chr3g0099161 34.473 351 210 11 5 345 67 407 5.40e-56 188
Msa0094060 MtrunA17_Chr7g0215961 33.043 345 204 9 9 346 10 334 2.81e-55 184
Msa0094060 MtrunA17_Chr3g0099231 32.764 351 218 10 3 345 2 342 2.70e-54 183
Msa0094060 MtrunA17_Chr5g0444401 31.624 351 211 10 10 347 11 345 4.53e-54 181
Msa0094060 MtrunA17_Chr5g0434621 34.713 314 192 8 35 343 29 334 7.76e-54 181
Msa0094060 MtrunA17_Chr3g0077571 33.531 337 207 9 10 342 12 335 1.08e-53 180
Msa0094060 MtrunA17_Chr2g0301641 34.242 330 206 6 31 354 43 367 7.45e-53 179
Msa0094060 MtrunA17_Chr3g0077581 34.154 325 198 9 29 344 34 351 1.28e-51 175
Msa0094060 MtrunA17_Chr3g0099151 33.239 352 214 12 5 345 62 403 1.90e-51 176
Msa0094060 MtrunA17_Chr4g0018571 55.696 158 67 2 196 353 23 177 1.11e-50 167
Msa0094060 MtrunA17_Chr4g0060811 34.483 319 198 9 35 348 31 343 1.91e-49 169
Msa0094060 MtrunA17_Chr3g0092131 34.796 319 197 9 35 348 27 339 3.88e-49 169
Msa0094060 MtrunA17_Chr4g0017431 31.975 319 206 8 29 342 29 341 1.97e-48 167
Msa0094060 MtrunA17_Chr8g0344941 31.447 318 206 7 31 342 41 352 2.50e-48 167
Msa0094060 MtrunA17_Chr3g0131321 32.075 318 206 6 31 342 34 347 1.04e-47 166
Msa0094060 MtrunA17_Chr2g0284921 34.056 323 191 10 27 342 30 337 2.54e-47 164
Msa0094060 MtrunA17_Chr6g0469521 57.724 123 51 1 205 327 31 152 4.14e-47 157
Msa0094060 MtrunA17_Chr2g0294311 30.303 330 214 6 30 347 31 356 7.23e-47 163
Msa0094060 MtrunA17_Chr8g0370981 29.114 395 222 8 9 353 22 408 9.48e-47 164
Msa0094060 MtrunA17_Chr8g0349341 30.435 368 220 13 7 354 4 355 3.05e-46 161
Msa0094060 MtrunA17_Chr8g0344931 31.250 320 201 8 31 345 37 342 7.17e-46 160
Msa0094060 MtrunA17_Chr8g0380031 32.464 345 213 9 3 343 56 384 4.06e-45 159
Msa0094060 MtrunA17_Chr5g0420811 34.125 337 195 14 22 350 24 341 9.95e-45 157
Msa0094060 MtrunA17_Chr1g0160011 33.918 342 186 12 30 345 39 366 8.53e-44 155
Msa0094060 MtrunA17_Chr3g0085231 31.831 355 203 12 3 343 1 330 2.33e-43 153
Msa0094060 MtrunA17_Chr8g0370951 31.124 347 218 13 12 345 11 349 8.63e-43 152
Msa0094060 MtrunA17_Chr2g0284951 33.542 319 190 11 29 342 31 332 2.33e-42 151
Msa0094060 MtrunA17_Chr3g0085881 33.019 318 191 10 29 342 31 330 3.92e-42 150
Msa0094060 MtrunA17_Chr2g0285001 32.184 348 203 14 10 342 8 337 4.75e-42 150
Msa0094060 MtrunA17_Chr8g0349321 28.743 334 213 10 31 354 37 355 9.15e-42 149
Msa0094060 MtrunA17_Chr2g0284991 32.326 331 204 10 29 353 31 347 2.00e-41 149
Msa0094060 MtrunA17_Chr1g0160031 32.286 350 197 12 23 346 31 366 2.66e-40 146
Msa0094060 MtrunA17_Chr8g0349301 29.936 314 184 10 7 302 4 299 9.50e-39 140
Msa0094060 MtrunA17_Chr1g0159971 31.045 335 197 10 31 341 47 371 1.93e-37 138
Msa0094060 MtrunA17_Chr2g0284941 31.579 323 184 9 29 347 31 320 2.00e-37 137
Msa0094060 MtrunA17_Chr8g0349331 27.731 357 201 10 9 354 13 323 2.68e-37 137
Msa0094060 MtrunA17_Chr4g0027581 42.484 153 65 2 221 351 41 192 3.07e-37 133
Msa0094060 MtrunA17_Chr1g0159991 31.395 344 194 12 30 345 35 364 2.08e-36 135
Msa0094060 MtrunA17_Chr7g0254461 29.714 350 208 11 30 351 42 381 2.97e-36 135
Msa0094060 MtrunA17_Chr1g0159981 30.117 342 201 12 30 345 45 374 4.32e-35 132
Msa0094060 MtrunA17_Chr1g0160101 31.507 365 208 14 9 345 21 371 4.89e-35 132
Msa0094060 MtrunA17_Chr6g0469511 53.390 118 55 0 26 143 25 142 9.14e-35 124
Msa0094060 MtrunA17_Chr2g0283481 28.446 341 205 11 31 346 47 373 2.10e-33 127
Msa0094060 MtrunA17_Chr8g0381581 28.329 353 198 12 30 346 39 372 9.63e-33 125
Msa0094060 MtrunA17_Chr8g0370961 29.130 230 158 2 124 353 10 234 3.73e-32 120
Msa0094060 MtrunA17_Chr2g0301581 31.016 374 194 17 3 347 7 345 2.26e-31 121
Msa0094060 MtrunA17_Chr4g0027561 56.566 99 43 0 26 124 25 123 3.69e-31 115
Msa0094060 MtrunA17_Chr3g0104821 27.859 341 210 12 31 347 44 372 6.91e-31 120
Msa0094060 MtrunA17_Chr7g0226911 26.611 357 209 13 31 351 35 374 8.81e-31 120
Msa0094060 MtrunA17_Chr8g0347751 28.080 349 211 12 31 351 36 372 3.21e-30 119
Msa0094060 MtrunA17_Chr7g0226941 30.058 346 199 13 30 346 32 363 3.39e-30 118
Msa0094060 MtrunA17_Chr2g0301541 30.481 374 196 17 3 347 7 345 8.77e-30 117
Msa0094060 MtrunA17_Chr6g0450721 28.696 345 210 13 23 351 25 349 1.59e-29 116
Msa0094060 MtrunA17_Chr7g0273101 29.855 345 201 14 30 346 28 359 1.71e-29 116
Msa0094060 MtrunA17_Chr7g0271551 28.406 345 200 14 30 351 34 354 1.94e-28 113
Msa0094060 MtrunA17_Chr0c01g0489581 27.473 364 224 14 3 347 1 343 1.97e-28 113
Msa0094060 MtrunA17_Chr2g0317271 27.473 364 224 14 3 347 1 343 2.89e-28 113
Msa0094060 MtrunA17_Chr2g0317261 27.473 364 224 14 3 347 1 343 2.95e-28 113
Msa0094060 MtrunA17_Chr2g0283501 28.261 368 220 14 6 347 10 359 3.75e-28 113
Msa0094060 MtrunA17_Chr2g0283511 27.193 342 202 13 36 347 36 360 4.62e-28 112
Msa0094060 MtrunA17_Chr7g0275291 26.158 367 235 11 3 346 7 360 4.65e-28 112
Msa0094060 MtrunA17_Chr7g0226931 26.027 365 212 12 31 351 38 388 9.18e-28 112
Msa0094060 MtrunA17_Chr6g0459921 31.364 220 139 7 129 342 127 340 1.23e-27 111
Msa0094060 MtrunA17_Chr0c01g0489571 27.473 364 224 14 3 347 1 343 1.38e-27 111
Msa0094060 MtrunA17_Chr1g0191461 27.479 353 208 11 30 351 30 365 2.39e-27 110
Msa0094060 MtrunA17_Chr5g0440501 29.258 229 137 6 131 344 11 229 2.98e-27 107
Msa0094060 MtrunA17_Chr6g0450731 27.035 344 219 12 23 351 25 351 5.41e-27 109
Msa0094060 MtrunA17_Chr6g0450711 27.451 357 217 13 21 351 111 451 9.32e-27 110
Msa0094060 MtrunA17_Chr3g0112821 27.147 361 236 13 3 347 1 350 1.56e-26 108
Msa0094060 MtrunA17_Chr6g0455661 30.180 222 143 7 128 343 237 452 4.11e-26 108
Msa0094060 MtrunA17_Chr6g0455661 42.735 117 61 4 1 117 3 113 4.51e-15 76.3
Msa0094060 MtrunA17_Chr3g0093031 26.575 365 238 12 3 347 1 355 1.25e-25 105
Msa0094060 MtrunA17_Chr6g0450701 27.405 343 206 14 30 346 38 363 2.89e-24 102
Msa0094060 MtrunA17_Chr1g0189921 54.023 87 39 1 31 117 31 116 2.62e-23 94.4
Msa0094060 MtrunA17_Chr2g0283531 28.863 343 213 14 31 352 31 363 2.64e-22 96.7
Msa0094060 MtrunA17_Chr4g0057991 24.269 342 213 10 32 347 40 361 3.13e-22 96.7
Msa0094060 MtrunA17_Chr3g0112691 25.201 373 231 13 3 347 1 353 9.20e-21 92.0
Msa0094060 MtrunA17_Chr3g0096551 24.603 378 240 12 3 347 1 366 1.01e-20 92.4
Msa0094060 MtrunA17_Chr8g0352901 24.786 351 224 12 28 351 25 362 2.87e-20 90.9
Msa0094060 MtrunA17_Chr7g0266061 26.163 344 224 13 11 345 22 344 1.04e-19 89.0
Msa0094060 MtrunA17_Chr2g0301591 30.033 303 170 12 3 289 7 283 3.57e-19 86.3
Msa0094060 MtrunA17_Chr2g0301571 30.070 286 141 13 91 347 46 301 6.72e-19 86.3
Msa0094060 MtrunA17_Chr4g0018561 52.174 69 33 0 12 80 11 79 1.86e-18 79.7
Msa0094060 MtrunA17_Chr1g0178941 27.410 332 210 12 32 350 41 354 2.43e-18 85.1
Msa0094060 MtrunA17_Chr2g0301551 30.070 286 141 13 91 347 46 301 3.80e-18 84.0
Msa0094060 MtrunA17_Chr3g0104831 25.769 260 167 9 108 347 38 291 9.41e-18 82.8
Msa0094060 MtrunA17_Chr1g0178931 25.000 336 211 12 32 353 38 346 5.07e-17 81.3
Msa0094060 MtrunA17_Chr2g0321991 48.889 90 44 2 29 117 31 119 2.58e-16 74.7
Msa0094060 MtrunA17_Chr5g0432081 58.929 56 21 2 290 345 10 63 8.19e-16 71.6
Msa0094060 MtrunA17_Chr1g0198351 24.159 327 206 12 23 335 35 333 1.02e-15 77.4
Msa0094060 MtrunA17_Chr8g0370971 38.053 113 66 1 9 117 16 128 8.98e-15 71.2
Msa0094060 MtrunA17_Chr8g0339251 24.333 300 201 9 12 301 9 292 5.46e-14 72.0
Msa0094060 MtrunA17_Chr1g0198381 25.000 316 200 13 32 335 3 293 9.09e-14 71.2
Msa0094060 MtrunA17_Chr2g0283541 28.144 167 111 3 195 352 123 289 1.40e-13 70.5
Msa0094060 MtrunA17_Chr6g0463261 30.645 124 86 0 81 204 1 124 1.47e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094060 AT3G16370.1 76.758 327 76 0 28 354 27 353 0.0 528
Msa0094060 AT5G22810.1 59.429 350 136 3 9 353 10 358 7.78e-151 429
Msa0094060 AT5G03810.1 58.310 355 143 4 1 353 1 352 1.44e-148 423
Msa0094060 AT5G03820.1 58.708 356 141 4 1 353 4 356 4.06e-148 422
Msa0094060 AT5G03820.2 58.939 358 137 5 1 353 32 384 2.71e-147 421
Msa0094060 AT3G53100.1 53.374 326 151 1 28 353 26 350 8.48e-134 385
Msa0094060 AT2G04570.1 44.340 318 176 1 29 346 26 342 2.74e-98 295
Msa0094060 AT5G42170.1 43.478 322 176 3 26 346 45 361 2.71e-95 288
Msa0094060 AT2G42990.1 41.562 320 186 1 29 348 26 344 6.81e-95 286
Msa0094060 AT4G26790.1 40.994 322 189 1 30 351 28 348 2.14e-92 280
Msa0094060 AT4G26790.2 40.994 322 189 1 30 351 28 348 2.14e-92 280
Msa0094060 AT3G14820.1 41.925 322 182 3 27 348 28 344 9.41e-91 276
Msa0094060 AT1G59406.1 40.625 352 202 5 1 351 1 346 2.82e-90 275
Msa0094060 AT1G59030.1 40.625 352 202 5 1 351 1 346 2.82e-90 275
Msa0094060 AT1G58725.1 40.625 352 202 5 1 351 1 346 2.82e-90 275
Msa0094060 AT1G20120.1 41.231 325 190 1 26 350 73 396 2.99e-90 276
Msa0094060 AT5G45960.1 42.949 312 171 4 29 335 45 354 2.73e-87 268
Msa0094060 AT2G24560.1 41.692 331 186 6 22 348 25 352 3.19e-87 267
Msa0094060 AT2G30220.1 41.076 353 187 9 10 348 9 354 5.41e-87 266
Msa0094060 AT2G30310.1 41.667 324 176 6 21 337 24 341 6.15e-87 266
Msa0094060 AT1G75880.2 38.905 347 204 2 9 348 23 368 8.80e-87 266
Msa0094060 AT1G75900.1 40.123 324 186 3 28 348 40 358 3.40e-86 265
Msa0094060 AT1G58430.1 41.104 326 187 5 23 345 27 350 5.83e-86 264
Msa0094060 AT1G06990.1 38.889 324 194 3 27 348 33 354 1.61e-85 263
Msa0094060 AT1G75880.1 39.080 348 203 3 9 348 23 369 1.74e-85 263
Msa0094060 AT2G31540.1 40.541 333 183 7 21 345 25 350 1.94e-85 263
Msa0094060 AT1G75890.2 40.123 324 192 2 26 348 42 364 5.35e-85 262
Msa0094060 AT1G75890.3 40.123 324 192 2 26 348 71 393 1.04e-84 262
Msa0094060 AT1G58520.3 40.426 329 183 5 26 353 25 341 1.75e-84 259
Msa0094060 AT1G58525.1 40.426 329 183 5 26 353 25 341 1.75e-84 259
Msa0094060 AT1G75890.1 39.039 333 188 3 30 348 46 377 9.34e-82 254
Msa0094060 AT2G40250.1 36.538 364 217 5 1 353 1 361 1.53e-81 253
Msa0094060 AT5G45950.1 40.566 318 182 4 29 346 38 348 8.89e-81 251
Msa0094060 AT5G63170.1 40.514 311 168 4 29 337 26 321 8.49e-77 240
Msa0094060 AT3G43570.1 37.730 326 170 4 26 351 25 317 5.03e-76 237
Msa0094060 AT1G20132.1 35.474 327 206 3 26 350 56 379 2.56e-72 230
Msa0094060 AT1G20130.2 35.965 342 199 5 25 353 178 512 1.62e-70 229
Msa0094060 AT1G20130.1 35.965 342 199 5 25 353 198 532 2.54e-70 229
Msa0094060 AT1G75920.2 35.693 339 204 3 12 348 11 337 3.54e-68 218
Msa0094060 AT1G23500.1 39.118 340 186 4 9 347 19 338 4.84e-67 215
Msa0094060 AT1G73610.1 34.561 353 209 5 3 348 1 338 7.20e-66 212
Msa0094060 AT2G24560.2 39.711 277 162 4 22 294 25 300 3.23e-65 209
Msa0094060 AT1G75920.1 34.463 354 203 4 12 348 6 347 1.10e-64 209
Msa0094060 AT3G43550.1 39.474 266 156 3 26 290 25 286 4.79e-64 205
Msa0094060 AT1G29670.1 36.657 341 197 11 11 342 10 340 2.26e-63 206
Msa0094060 AT1G29670.2 36.657 341 197 11 11 342 78 408 1.31e-62 206
Msa0094060 AT3G04290.1 36.025 322 193 8 31 346 29 343 1.79e-62 204
Msa0094060 AT1G20135.1 34.954 329 198 5 10 337 9 322 1.14e-61 201
Msa0094060 AT1G75910.1 34.783 322 196 3 30 348 27 337 5.27e-61 199
Msa0094060 AT2G23540.1 33.978 362 220 7 9 353 17 376 6.98e-61 200
Msa0094060 AT4G28780.1 34.251 327 206 7 24 346 24 345 3.54e-60 198
Msa0094060 AT5G15720.1 36.443 343 188 10 16 342 14 342 2.74e-59 196
Msa0094060 AT5G33370.1 35.093 322 196 9 31 346 30 344 3.85e-59 195
Msa0094060 AT3G50400.1 33.989 356 218 9 6 346 3 356 2.85e-58 193
Msa0094060 AT1G29660.1 34.006 347 218 8 1 342 1 341 6.05e-58 192
Msa0094060 AT5G18430.1 33.125 320 207 5 31 346 28 344 4.69e-57 189
Msa0094060 AT1G75930.1 34.545 330 199 5 23 348 21 337 2.92e-56 187
Msa0094060 AT4G10950.2 30.915 317 214 4 29 343 69 382 5.27e-56 188
Msa0094060 AT4G18970.1 34.472 322 200 7 26 342 23 338 6.36e-56 187
Msa0094060 AT1G75920.3 32.153 339 185 4 12 348 11 306 1.83e-55 184
Msa0094060 AT4G18970.2 34.472 322 200 7 26 342 23 338 2.68e-55 186
Msa0094060 AT1G75920.4 34.343 297 182 2 54 348 24 309 1.48e-54 182
Msa0094060 AT5G45670.1 33.431 341 217 7 6 341 3 338 2.59e-54 182
Msa0094060 AT5G41890.1 34.242 330 194 9 35 347 35 358 3.25e-53 180
Msa0094060 AT5G37690.1 33.651 315 198 7 35 345 31 338 6.67e-53 179
Msa0094060 AT4G10950.1 30.599 317 211 5 29 343 69 378 9.12e-53 179
Msa0094060 AT1G71250.1 33.438 317 204 5 29 342 39 351 1.59e-52 178
Msa0094060 AT1G53920.1 33.030 330 208 8 26 349 43 365 3.67e-52 177
Msa0094060 AT1G33811.1 32.578 353 220 10 5 344 4 351 4.04e-52 177
Msa0094060 AT1G71691.2 34.259 324 194 9 26 342 50 361 1.60e-50 173
Msa0094060 AT2G31550.1 38.605 215 118 6 138 345 2 209 1.88e-49 166
Msa0094060 AT5G08460.1 29.912 341 227 7 9 342 28 363 9.00e-49 169
Msa0094060 AT2G19050.1 33.956 321 189 10 29 344 29 331 1.59e-48 167
Msa0094060 AT5G37690.2 33.016 315 192 8 35 345 31 330 1.64e-48 167
Msa0094060 AT2G19010.1 32.827 329 194 11 30 351 29 337 2.37e-48 166
Msa0094060 AT2G19010.2 32.827 329 194 11 30 351 59 367 4.55e-48 166
Msa0094060 AT1G71120.1 32.622 328 205 8 23 345 23 339 3.67e-47 164
Msa0094060 AT2G19060.1 32.641 337 198 12 28 353 27 345 4.67e-47 163
Msa0094060 AT1G74460.1 33.043 345 217 10 8 348 5 339 1.46e-46 162
Msa0094060 AT5G33370.2 35.338 266 161 7 31 290 30 290 9.65e-46 159
Msa0094060 AT5G15720.2 36.770 291 156 9 16 290 14 292 2.21e-45 158
Msa0094060 AT5G55050.1 31.402 328 209 10 29 346 37 358 2.47e-45 159
Msa0094060 AT3G14225.1 28.659 328 222 6 31 349 37 361 1.10e-43 155
Msa0094060 AT3G14225.2 28.037 321 222 5 31 345 37 354 1.25e-42 152
Msa0094060 AT5G40990.1 29.283 321 218 5 31 345 37 354 3.19e-42 151
Msa0094060 AT1G53940.2 28.571 357 237 7 4 345 3 356 7.91e-42 150
Msa0094060 AT1G53990.1 28.775 351 222 8 9 345 9 345 3.48e-41 148
Msa0094060 AT4G30140.1 30.503 318 200 10 30 344 32 331 4.95e-41 147
Msa0094060 AT4G16230.1 38.537 205 120 3 29 229 28 230 3.80e-40 142
Msa0094060 AT1G28610.2 31.579 342 195 11 31 347 31 358 3.86e-36 135
Msa0094060 AT5G15720.3 32.331 266 154 7 92 342 57 311 4.53e-36 134
Msa0094060 AT5G14450.1 29.199 387 217 16 1 346 1 371 4.92e-36 135
Msa0094060 AT2G19050.2 32.700 263 161 7 29 289 29 277 5.08e-36 132
Msa0094060 AT1G71691.3 33.456 272 164 8 26 290 50 311 5.33e-36 133
Msa0094060 AT2G27360.1 31.085 341 198 12 31 346 33 361 2.10e-35 133
Msa0094060 AT1G28580.1 30.178 338 204 12 31 346 37 364 6.32e-34 129
Msa0094060 AT1G28650.1 30.267 337 205 12 31 346 37 364 3.73e-33 127
Msa0094060 AT1G28640.1 28.783 337 210 12 31 346 35 362 6.43e-33 126
Msa0094060 AT1G28570.1 29.254 335 213 11 31 347 34 362 8.46e-33 126
Msa0094060 AT1G31550.2 30.029 343 199 13 31 347 36 363 3.69e-32 124
Msa0094060 AT1G28600.1 28.846 364 219 14 10 346 7 357 4.64e-32 124
Msa0094060 AT1G54790.3 27.536 345 209 12 30 346 31 362 3.89e-31 121
Msa0094060 AT4G01130.1 27.586 377 234 14 3 351 5 370 5.80e-31 121
Msa0094060 AT1G71691.1 30.350 257 162 7 93 342 14 260 6.02e-31 119
Msa0094060 AT1G28590.1 29.240 342 204 12 31 347 36 364 2.48e-30 119
Msa0094060 AT1G28670.1 29.882 338 206 12 31 346 35 363 3.89e-30 119
Msa0094060 AT3G48460.1 26.176 340 211 11 32 347 39 362 6.15e-30 118
Msa0094060 AT1G53940.1 28.188 298 200 6 4 290 3 297 9.41e-30 116
Msa0094060 AT1G67830.1 27.826 345 208 12 30 345 29 361 1.32e-29 117
Msa0094060 AT3G05180.1 27.729 339 208 10 30 342 35 362 2.74e-29 116
Msa0094060 AT2G03980.2 27.761 335 207 11 30 348 42 357 6.32e-29 115
Msa0094060 AT2G03980.3 27.761 335 207 11 30 348 42 357 6.32e-29 115
Msa0094060 AT2G03980.1 27.761 335 207 11 30 348 42 357 6.32e-29 115
Msa0094060 AT2G03980.4 27.761 335 207 11 30 348 42 357 6.32e-29 115
Msa0094060 AT1G09390.1 28.000 325 215 9 28 342 34 349 1.14e-28 114
Msa0094060 AT1G56670.1 26.100 341 221 10 27 351 36 361 2.25e-28 114
Msa0094060 AT1G31550.1 29.240 342 200 14 31 347 36 360 2.66e-28 114
Msa0094060 AT1G28660.1 28.190 337 212 11 31 346 35 362 4.47e-28 113
Msa0094060 AT3G14220.1 26.791 321 209 10 30 343 31 332 2.75e-27 110
Msa0094060 AT3G62280.1 26.647 334 210 11 30 346 35 350 1.15e-26 108
Msa0094060 AT1G28660.2 28.190 337 211 12 31 346 35 361 1.29e-26 109
Msa0094060 AT1G54030.1 27.653 311 195 10 32 338 53 337 3.56e-26 108
Msa0094060 AT1G54790.1 25.134 374 239 12 1 346 1 361 1.44e-25 106
Msa0094060 AT3G26430.1 29.204 339 197 14 30 338 30 355 3.94e-25 105
Msa0094060 AT1G54020.2 26.791 321 206 10 29 342 29 327 5.91e-25 104
Msa0094060 AT1G54010.1 25.449 334 221 9 29 353 32 346 1.03e-24 103
Msa0094060 AT3G27950.1 26.879 346 213 11 30 351 31 360 6.63e-24 101
Msa0094060 AT5G45910.1 27.105 380 235 16 3 352 1 368 1.96e-23 100
Msa0094060 AT2G04020.1 33.168 202 122 6 30 226 42 235 5.07e-22 94.4
Msa0094060 AT1G54000.1 25.301 332 220 10 23 346 28 339 5.15e-22 96.7
Msa0094060 AT2G04020.2 33.168 202 122 6 30 226 42 235 9.32e-22 94.7
Msa0094060 AT1G54790.2 23.500 400 239 13 1 346 1 387 1.39e-20 92.4
Msa0094060 AT1G28580.2 27.465 284 178 10 82 346 9 283 1.57e-20 91.3
Msa0094060 AT5G03610.1 26.023 342 218 13 21 347 29 350 1.70e-20 91.7
Msa0094060 AT3G14210.1 27.356 329 201 13 31 345 36 340 3.41e-20 91.3
Msa0094060 AT4G01130.3 26.923 286 176 10 95 351 3 284 3.92e-20 89.7
Msa0094060 AT3G09930.2 26.984 315 200 11 32 335 40 335 1.11e-19 89.4
Msa0094060 AT3G09930.1 26.984 315 200 11 32 335 40 335 1.11e-19 89.4
Msa0094060 AT4G01130.2 26.557 305 196 11 3 290 5 298 1.64e-19 88.6
Msa0094060 AT5G03600.2 25.967 362 213 13 3 345 21 346 7.71e-18 84.0
Msa0094060 AT4G16220.1 48.182 110 50 3 8 117 12 114 9.47e-18 82.0
Msa0094060 AT5G03600.1 26.190 336 193 13 29 345 12 311 1.78e-17 82.4
Msa0094060 AT1G56670.2 26.354 277 176 9 27 290 36 297 5.61e-17 80.9
Msa0094060 AT1G54030.2 28.571 259 153 9 32 283 53 286 6.56e-17 80.9
Msa0094060 AT1G28570.3 26.238 202 135 6 157 347 1 199 7.17e-16 76.3
Msa0094060 AT1G28570.2 26.238 202 135 6 157 347 92 290 2.31e-15 76.3
Msa0094060 AT5G03980.1 25.316 237 152 8 130 353 94 318 2.78e-15 76.3
Msa0094060 AT1G54020.1 24.242 264 176 7 86 345 1 244 5.22e-14 72.0
Msa0094060 AT1G54020.5 24.242 264 176 7 86 345 1 244 5.22e-14 72.0
Msa0094060 AT1G54020.3 24.242 264 176 7 86 345 1 244 5.22e-14 72.0
Msa0094060 AT1G54020.4 25.397 189 137 3 158 345 10 195 1.81e-13 69.7
Msa0094060 AT4G16233.1 29.630 108 75 1 239 346 6 112 5.96e-13 65.9
Msa0094060 AT1G28610.1 32.530 166 87 7 29 179 29 184 1.10e-11 64.7
Msa0094060 AT1G28600.2 32.402 179 94 10 11 172 8 176 2.00e-11 63.5

Find 92 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAATCCCCTTCAAAATT+TGG 0.113263 1_2:+77162598 Msa0094060:CDS
AACACAGGACTTGTATAAAT+TGG 0.145557 1_2:+77162357 Msa0094060:intron
TTTAAGTACATTGGTTAATT+TGG 0.163410 1_2:+77163013 Msa0094060:three_prime_UTR
AAAACCTCCCAGTGGGTTTA+TGG 0.171244 1_2:-77161537 None:intergenic
AAGGATTGACATAATAGTTT+TGG 0.253181 1_2:-77162116 None:intergenic
GTGACAACTTTGTTGATTAA+AGG 0.259570 1_2:-77162135 None:intergenic
TTAATTTCACTAAGGAAATA+TGG 0.271641 1_2:-77163108 None:intergenic
TAAGACCAGGAAGTTGCTTT+TGG 0.276088 1_2:-77162534 None:intergenic
TTGTGCATCATTGTTGATTC+TGG 0.278755 1_2:-77162473 None:intergenic
AAAGCTAACTATCCTCCTTA+TGG 0.312317 1_2:+77161499 Msa0094060:CDS
AGGAAAGGCTGCTGTGGAAC+TGG 0.322949 1_2:+77162730 Msa0094060:CDS
ATGCAACTCAGTATGTGTTT+TGG 0.323360 1_2:+77162809 Msa0094060:CDS
TCCGAATTCGGGATGAAATA+TGG 0.324423 1_2:+77163201 Msa0094060:three_prime_UTR
GCCATATTTCATCCCGAATT+CGG 0.339948 1_2:-77163202 None:intergenic
AGAACATTGAACTCCGAATT+CGG 0.339968 1_2:+77163189 Msa0094060:three_prime_UTR
CCTGCTACAAGGACTTTGTT+TGG 0.340385 1_2:+77162427 Msa0094060:CDS
CAAGGTAGCTGGAAGTAAAA+AGG 0.359520 1_2:+77162035 Msa0094060:CDS
GGCATAAGCCTTATCGGTTA+AGG 0.371190 1_2:+77162892 Msa0094060:CDS
GAACAAGGCATAAGCCTTAT+CGG 0.374261 1_2:+77162886 Msa0094060:CDS
AAGGCAGCATCAATTATTAA+AGG 0.375056 1_2:+77162054 Msa0094060:CDS
TTCAACCCTCATTCATCAAT+AGG 0.391362 1_2:+77161216 Msa0094060:five_prime_UTR
TCACCAAACGTCACGATTGC+CGG 0.392033 1_2:-77161430 None:intergenic
AAACTCCAAAAGCAACTTCC+TGG 0.409834 1_2:+77162529 Msa0094060:CDS
ACACAGGACTTGTATAAATT+GGG 0.411497 1_2:+77162358 Msa0094060:intron
TGGTGACTCTGCTGTGGATG+TGG 0.414876 1_2:+77161447 Msa0094060:CDS
CAAAATTTGCTCCAATAAGA+AGG 0.415639 1_2:-77161836 None:intergenic
GAACATTGAACTCCGAATTC+GGG 0.415794 1_2:+77163190 Msa0094060:three_prime_UTR
AAATTAGCTACTGATATTAC+TGG 0.418320 1_2:+77161568 Msa0094060:CDS
GGTGACTCTGCTGTGGATGT+GGG 0.428006 1_2:+77161448 Msa0094060:CDS
TATCTTAGCCCTCAAGCAAC+AGG 0.436881 1_2:+77161807 Msa0094060:CDS
AGATAACACAATACGAATCT+TGG 0.445897 1_2:-77163131 None:intergenic
TTGTTTGGATTCCATGAGAA+AGG 0.448046 1_2:+77162442 Msa0094060:CDS
GTTGCATTAGAACAGGTTCC+TGG 0.453335 1_2:-77162793 None:intergenic
CACTACTTCCACCACTCAAT+AGG 0.457776 1_2:-77162086 None:intergenic
TCAACCCTCATTCATCAATA+GGG 0.458495 1_2:+77161217 Msa0094060:five_prime_UTR
AGTACATTGGTTAATTTGGA+AGG 0.468913 1_2:+77163017 Msa0094060:three_prime_UTR
CTACCTTGGAAAGCTTACTT+TGG 0.474075 1_2:-77162020 None:intergenic
AATCTTGGTTAATTTCACTA+AGG 0.475390 1_2:-77163116 None:intergenic
CTAACAAAGTCTCTTCCATA+AGG 0.478982 1_2:-77161514 None:intergenic
GTTCCGGCAATCGTGACGTT+TGG 0.482783 1_2:+77161427 Msa0094060:CDS
ATACTGAGTTGCATTAGAAC+AGG 0.482835 1_2:-77162800 None:intergenic
TGCATCTGGTTATGATGAAA+AGG 0.486563 1_2:+77161866 Msa0094060:CDS
AGTGACTTCACTACCACCAT+TGG 0.497426 1_2:+77162396 Msa0094060:CDS
AGTAAGCTTTCCAAGGTAGC+TGG 0.499862 1_2:+77162024 Msa0094060:CDS
GATGAATGAGGGTTGAAGTT+GGG 0.501483 1_2:-77161210 None:intergenic
ACAAGATGATACTGTTGTTC+CGG 0.501937 1_2:+77161411 Msa0094060:CDS
TGGTGACACAACCTTTCTCA+TGG 0.505021 1_2:-77162453 None:intergenic
GGAAAGGCTGCTGTGGAACT+GGG 0.509378 1_2:+77162731 Msa0094060:CDS
AGTGACTTGTTTAAGTACAT+TGG 0.509755 1_2:+77163004 Msa0094060:three_prime_UTR
AGGTATGCAGAATATTGATC+AGG 0.511148 1_2:-77162159 None:intergenic
CCAAACAAAGTCCTTGTAGC+AGG 0.515201 1_2:-77162427 None:intergenic
ATCTCGTGGAAACACCATCT+TGG 0.516305 1_2:+77163150 Msa0094060:three_prime_UTR
GTGACTTCACTACCACCATT+GGG 0.516685 1_2:+77162397 Msa0094060:CDS
AATGACCCTATTGATGAATG+AGG 0.519877 1_2:-77161222 None:intergenic
TCAATGCATCAGCTAGAACT+TGG 0.522397 1_2:-77162861 None:intergenic
GCATGAATCCTTAACCGATA+AGG 0.523528 1_2:-77162900 None:intergenic
GTACATTGGTTAATTTGGAA+GGG 0.526076 1_2:+77163018 Msa0094060:three_prime_UTR
TCTCTCTAGCTAACAACACT+AGG 0.536448 1_2:-77161317 None:intergenic
TGATGAATGAGGGTTGAAGT+TGG 0.544791 1_2:-77161211 None:intergenic
GAGGCAAGGAAAGGCTGCTG+TGG 0.548555 1_2:+77162724 Msa0094060:CDS
ATTCGTATTGTGTTATCTCG+TGG 0.548870 1_2:+77163136 Msa0094060:three_prime_UTR
GATTAGCACAATGACCAAGA+TGG 0.549709 1_2:-77163164 None:intergenic
TTTGTTAGCCATAAACCCAC+TGG 0.558300 1_2:+77161529 Msa0094060:CDS
CCATTGCAAAACCTCCCAGT+GGG 0.560224 1_2:-77161544 None:intergenic
GCTTGAGGGCTAAGATATGC+AGG 0.564871 1_2:-77161801 None:intergenic
TGGGTTGCCTACCTGCTACA+AGG 0.564941 1_2:+77162416 Msa0094060:CDS
GTGACTCTGCTGTGGATGTG+GGG 0.573179 1_2:+77161449 Msa0094060:CDS
GACGTTTGGTGACTCTGCTG+TGG 0.577397 1_2:+77161441 Msa0094060:CDS
ACTTGGTTAGCAGCTTCTGA+AGG 0.578036 1_2:-77162844 None:intergenic
GATTGAACAAGTTCATAGAG+AGG 0.612422 1_2:-77162583 None:intergenic
ATACCAAAGTAAGCTTTCCA+AGG 0.615809 1_2:+77162017 Msa0094060:CDS
ACAAAGTCTCTTCCATAAGG+AGG 0.615968 1_2:-77161511 None:intergenic
TATTTAAAAGAAAATAAACA+TGG 0.617253 1_2:-77163064 None:intergenic
TAACAACACTAGGTTTCTGA+AGG 0.619039 1_2:-77161307 None:intergenic
GCAACAGTTAAAATATTACA+AGG 0.623783 1_2:+77161993 Msa0094060:CDS
TTGTGCAATCAAAAGTCACC+AGG 0.626995 1_2:+77162775 Msa0094060:CDS
ATGTACTTAAACAAGTCACT+AGG 0.638387 1_2:-77163001 None:intergenic
GCAGGTAGGCAACCCAATGG+TGG 0.643466 1_2:-77162409 None:intergenic
AAGACAACAATCTTAAGACC+AGG 0.651941 1_2:-77162547 None:intergenic
TTGTTAGCCATAAACCCACT+GGG 0.652946 1_2:+77161530 Msa0094060:CDS
ATGACCCTATTGATGAATGA+GGG 0.655410 1_2:-77161221 None:intergenic
AGAATCAACAATGATGCACA+AGG 0.655662 1_2:+77162475 Msa0094060:CDS
GCTGATGCATTGATTGAACA+AGG 0.656923 1_2:+77162871 Msa0094060:CDS
GCCATTGCAAAACCTCCCAG+TGG 0.660851 1_2:-77161545 None:intergenic
GTAGCAGGTAGGCAACCCAA+TGG 0.662304 1_2:-77162412 None:intergenic
ACAAAGTCCTTGTAGCAGGT+AGG 0.673754 1_2:-77162423 None:intergenic
TTATCGGTTAAGGATTCATG+CGG 0.678552 1_2:+77162902 Msa0094060:exon
GCATTGTACCTATTGAGTGG+TGG 0.691170 1_2:+77162078 Msa0094060:CDS
ATTTAACAAGAAAATCAACT+CGG 0.691992 1_2:+77162498 Msa0094060:CDS
AACTTGAGTATGTATCAACA+AGG 0.714639 1_2:-77162179 None:intergenic
TTAGCCATAAACCCACTGGG+AGG 0.727905 1_2:+77161533 Msa0094060:CDS
GGTGCATTGTACCTATTGAG+TGG 0.748700 1_2:+77162075 Msa0094060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAAAGAAAATAAACA+TGG - chr1_2:77163067-77163086 None:intergenic 10.0%
!! TATTTAAAAGAAAATAAACA+TGG - chr1_2:77163067-77163086 None:intergenic 10.0%
!! TGTAGAAAAAATTAATATTG+CGG - chr1_2:77161255-77161274 None:intergenic 15.0%
!! GTACAATTGTTATAAATATA+TGG - chr1_2:77162244-77162263 None:intergenic 15.0%
!! TGTAGAAAAAATTAATATTG+CGG - chr1_2:77161255-77161274 None:intergenic 15.0%
!! GTACAATTGTTATAAATATA+TGG - chr1_2:77162244-77162263 None:intergenic 15.0%
!! AAAAACAAAGCAACTTTAAA+TGG - chr1_2:77162336-77162355 None:intergenic 20.0%
!! ATTTAACAAGAAAATCAACT+CGG + chr1_2:77162498-77162517 Msa0094060:CDS 20.0%
!!! AATTTTATTTAATAGGATGC+AGG - chr1_2:77162971-77162990 None:intergenic 20.0%
!!! TTTAAGTACATTGGTTAATT+TGG + chr1_2:77163013-77163032 Msa0094060:three_prime_UTR 20.0%
!!! TATGGTTTTCATTAACAAAT+TGG - chr1_2:77163093-77163112 None:intergenic 20.0%
!! TTAATTTCACTAAGGAAATA+TGG - chr1_2:77163111-77163130 None:intergenic 20.0%
!! AAAAACAAAGCAACTTTAAA+TGG - chr1_2:77162336-77162355 None:intergenic 20.0%
!! ATTTAACAAGAAAATCAACT+CGG + chr1_2:77162498-77162517 Msa0094060:CDS 20.0%
!!! AATTTTATTTAATAGGATGC+AGG - chr1_2:77162971-77162990 None:intergenic 20.0%
!!! TTTAAGTACATTGGTTAATT+TGG + chr1_2:77163013-77163032 Msa0094060:three_prime_UTR 20.0%
!!! TATGGTTTTCATTAACAAAT+TGG - chr1_2:77163093-77163112 None:intergenic 20.0%
!! TTAATTTCACTAAGGAAATA+TGG - chr1_2:77163111-77163130 None:intergenic 20.0%
! AAATTAGCTACTGATATTAC+TGG + chr1_2:77161568-77161587 Msa0094060:CDS 25.0%
!! AAATGTTAGTATTTTCTCCA+TGG + chr1_2:77161656-77161675 Msa0094060:intron 25.0%
!! AATGTTAGTATTTTCTCCAT+GGG + chr1_2:77161657-77161676 Msa0094060:intron 25.0%
!!! ATTAGTATTAGAAGTGTTGA+AGG - chr1_2:77161706-77161725 None:intergenic 25.0%
! GCAACAGTTAAAATATTACA+AGG + chr1_2:77161993-77162012 Msa0094060:CDS 25.0%
!! AAGGATTGACATAATAGTTT+TGG - chr1_2:77162119-77162138 None:intergenic 25.0%
!!! TACATACTCAAGTTTTGTTA+AGG + chr1_2:77162188-77162207 Msa0094060:CDS 25.0%
!! ATTGCTTACCAAATTTTGAA+GGG - chr1_2:77162609-77162628 None:intergenic 25.0%
!! TATTGCTTACCAAATTTTGA+AGG - chr1_2:77162610-77162629 None:intergenic 25.0%
! AATCTTGGTTAATTTCACTA+AGG - chr1_2:77163119-77163138 None:intergenic 25.0%
! AAATTAGCTACTGATATTAC+TGG + chr1_2:77161568-77161587 Msa0094060:CDS 25.0%
!! AAATGTTAGTATTTTCTCCA+TGG + chr1_2:77161656-77161675 Msa0094060:intron 25.0%
!! AATGTTAGTATTTTCTCCAT+GGG + chr1_2:77161657-77161676 Msa0094060:intron 25.0%
!!! ATTAGTATTAGAAGTGTTGA+AGG - chr1_2:77161706-77161725 None:intergenic 25.0%
! GCAACAGTTAAAATATTACA+AGG + chr1_2:77161993-77162012 Msa0094060:CDS 25.0%
!! AAGGATTGACATAATAGTTT+TGG - chr1_2:77162119-77162138 None:intergenic 25.0%
!!! TACATACTCAAGTTTTGTTA+AGG + chr1_2:77162188-77162207 Msa0094060:CDS 25.0%
!! ATTGCTTACCAAATTTTGAA+GGG - chr1_2:77162609-77162628 None:intergenic 25.0%
!! TATTGCTTACCAAATTTTGA+AGG - chr1_2:77162610-77162629 None:intergenic 25.0%
! AATCTTGGTTAATTTCACTA+AGG - chr1_2:77163119-77163138 None:intergenic 25.0%
! TGTGTTTGCATTTGTGTTTT+TGG + chr1_2:77161375-77161394 Msa0094060:CDS 30.0%
! GTGTTTGCATTTGTGTTTTT+GGG + chr1_2:77161376-77161395 Msa0094060:CDS 30.0%
!! AAGTGTTGAAGGTCTTAAAA+GGG - chr1_2:77161695-77161714 None:intergenic 30.0%
ACAGGAAAAAACCTTCTTAT+TGG + chr1_2:77161825-77161844 Msa0094060:CDS 30.0%
! CAAAATTTGCTCCAATAAGA+AGG - chr1_2:77161839-77161858 None:intergenic 30.0%
!!! TATTTTAACTGTTGCGACAA+TGG - chr1_2:77161988-77162007 None:intergenic 30.0%
AAGGCAGCATCAATTATTAA+AGG + chr1_2:77162054-77162073 Msa0094060:CDS 30.0%
! GTGACAACTTTGTTGATTAA+AGG - chr1_2:77162138-77162157 None:intergenic 30.0%
AACTTGAGTATGTATCAACA+AGG - chr1_2:77162182-77162201 None:intergenic 30.0%
TTATTTGTAACGATGTGGTA+TGG - chr1_2:77162311-77162330 None:intergenic 30.0%
!!! TGGTTTTATTTGTAACGATG+TGG - chr1_2:77162316-77162335 None:intergenic 30.0%
!!! GTTGCTTTGTTTTTTAACAC+AGG + chr1_2:77162342-77162361 Msa0094060:intron 30.0%
AACACAGGACTTGTATAAAT+TGG + chr1_2:77162357-77162376 Msa0094060:intron 30.0%
ACACAGGACTTGTATAAATT+GGG + chr1_2:77162358-77162377 Msa0094060:intron 30.0%
AAATTGGGAGCTAGAAAAAT+TGG + chr1_2:77162373-77162392 Msa0094060:CDS 30.0%
!! TTGCTTACCAAATTTTGAAG+GGG - chr1_2:77162608-77162627 None:intergenic 30.0%
TCTATCTTGTGACATTCAAT+AGG + chr1_2:77162694-77162713 Msa0094060:intron 30.0%
!! TGACTTTTGATTGCACAATA+AGG - chr1_2:77162773-77162792 None:intergenic 30.0%
ATGTACTTAAACAAGTCACT+AGG - chr1_2:77163004-77163023 None:intergenic 30.0%
!! AGTGACTTGTTTAAGTACAT+TGG + chr1_2:77163004-77163023 Msa0094060:three_prime_UTR 30.0%
! AGTACATTGGTTAATTTGGA+AGG + chr1_2:77163017-77163036 Msa0094060:three_prime_UTR 30.0%
! GTACATTGGTTAATTTGGAA+GGG + chr1_2:77163018-77163037 Msa0094060:three_prime_UTR 30.0%
AGATAACACAATACGAATCT+TGG - chr1_2:77163134-77163153 None:intergenic 30.0%
! TGTGTTTGCATTTGTGTTTT+TGG + chr1_2:77161375-77161394 Msa0094060:CDS 30.0%
! GTGTTTGCATTTGTGTTTTT+GGG + chr1_2:77161376-77161395 Msa0094060:CDS 30.0%
!! AAGTGTTGAAGGTCTTAAAA+GGG - chr1_2:77161695-77161714 None:intergenic 30.0%
ACAGGAAAAAACCTTCTTAT+TGG + chr1_2:77161825-77161844 Msa0094060:CDS 30.0%
! CAAAATTTGCTCCAATAAGA+AGG - chr1_2:77161839-77161858 None:intergenic 30.0%
!!! TATTTTAACTGTTGCGACAA+TGG - chr1_2:77161988-77162007 None:intergenic 30.0%
AAGGCAGCATCAATTATTAA+AGG + chr1_2:77162054-77162073 Msa0094060:CDS 30.0%
! GTGACAACTTTGTTGATTAA+AGG - chr1_2:77162138-77162157 None:intergenic 30.0%
AACTTGAGTATGTATCAACA+AGG - chr1_2:77162182-77162201 None:intergenic 30.0%
TTATTTGTAACGATGTGGTA+TGG - chr1_2:77162311-77162330 None:intergenic 30.0%
!!! TGGTTTTATTTGTAACGATG+TGG - chr1_2:77162316-77162335 None:intergenic 30.0%
!!! GTTGCTTTGTTTTTTAACAC+AGG + chr1_2:77162342-77162361 Msa0094060:intron 30.0%
AACACAGGACTTGTATAAAT+TGG + chr1_2:77162357-77162376 Msa0094060:intron 30.0%
ACACAGGACTTGTATAAATT+GGG + chr1_2:77162358-77162377 Msa0094060:intron 30.0%
AAATTGGGAGCTAGAAAAAT+TGG + chr1_2:77162373-77162392 Msa0094060:CDS 30.0%
!! TTGCTTACCAAATTTTGAAG+GGG - chr1_2:77162608-77162627 None:intergenic 30.0%
TCTATCTTGTGACATTCAAT+AGG + chr1_2:77162694-77162713 Msa0094060:intron 30.0%
!! TGACTTTTGATTGCACAATA+AGG - chr1_2:77162773-77162792 None:intergenic 30.0%
ATGTACTTAAACAAGTCACT+AGG - chr1_2:77163004-77163023 None:intergenic 30.0%
!! AGTGACTTGTTTAAGTACAT+TGG + chr1_2:77163004-77163023 Msa0094060:three_prime_UTR 30.0%
! AGTACATTGGTTAATTTGGA+AGG + chr1_2:77163017-77163036 Msa0094060:three_prime_UTR 30.0%
! GTACATTGGTTAATTTGGAA+GGG + chr1_2:77163018-77163037 Msa0094060:three_prime_UTR 30.0%
AGATAACACAATACGAATCT+TGG - chr1_2:77163134-77163153 None:intergenic 30.0%
TTCAACCCTCATTCATCAAT+AGG + chr1_2:77161216-77161235 Msa0094060:five_prime_UTR 35.0%
TCAACCCTCATTCATCAATA+GGG + chr1_2:77161217-77161236 Msa0094060:five_prime_UTR 35.0%
ATGACCCTATTGATGAATGA+GGG - chr1_2:77161224-77161243 None:intergenic 35.0%
AATGACCCTATTGATGAATG+AGG - chr1_2:77161225-77161244 None:intergenic 35.0%
TAACAACACTAGGTTTCTGA+AGG - chr1_2:77161310-77161329 None:intergenic 35.0%
!!! TTGCATTTGTGTTTTTGGGA+TGG + chr1_2:77161380-77161399 Msa0094060:CDS 35.0%
!!! TGCATTTGTGTTTTTGGGAT+GGG + chr1_2:77161381-77161400 Msa0094060:CDS 35.0%
ACAAGATGATACTGTTGTTC+CGG + chr1_2:77161411-77161430 Msa0094060:CDS 35.0%
AAAGCTAACTATCCTCCTTA+TGG + chr1_2:77161499-77161518 Msa0094060:CDS 35.0%
CTAACAAAGTCTCTTCCATA+AGG - chr1_2:77161517-77161536 None:intergenic 35.0%
!! GAAGTGTTGAAGGTCTTAAA+AGG - chr1_2:77161696-77161715 None:intergenic 35.0%
! TCTTTTTGTAGCTGATACAC+TGG + chr1_2:77161761-77161780 Msa0094060:intron 35.0%
! CTTTTTGTAGCTGATACACT+GGG + chr1_2:77161762-77161781 Msa0094060:intron 35.0%
TGCATCTGGTTATGATGAAA+AGG + chr1_2:77161866-77161885 Msa0094060:CDS 35.0%
ATACCAAAGTAAGCTTTCCA+AGG + chr1_2:77162017-77162036 Msa0094060:CDS 35.0%
AGGTATGCAGAATATTGATC+AGG - chr1_2:77162162-77162181 None:intergenic 35.0%
TTGTTTGGATTCCATGAGAA+AGG + chr1_2:77162442-77162461 Msa0094060:CDS 35.0%
!! TTGTGCATCATTGTTGATTC+TGG - chr1_2:77162476-77162495 None:intergenic 35.0%
AGAATCAACAATGATGCACA+AGG + chr1_2:77162475-77162494 Msa0094060:CDS 35.0%
AAGACAACAATCTTAAGACC+AGG - chr1_2:77162550-77162569 None:intergenic 35.0%
GATTGAACAAGTTCATAGAG+AGG - chr1_2:77162586-77162605 None:intergenic 35.0%
GTTCAATCCCCTTCAAAATT+TGG + chr1_2:77162598-77162617 Msa0094060:CDS 35.0%
! GTGACATTCAATAGGTTTTG+CGG + chr1_2:77162702-77162721 Msa0094060:intron 35.0%
ATACTGAGTTGCATTAGAAC+AGG - chr1_2:77162803-77162822 None:intergenic 35.0%
! ATGCAACTCAGTATGTGTTT+TGG + chr1_2:77162809-77162828 Msa0094060:CDS 35.0%
! TGCAACTCAGTATGTGTTTT+GGG + chr1_2:77162810-77162829 Msa0094060:CDS 35.0%
! TTATCGGTTAAGGATTCATG+CGG + chr1_2:77162902-77162921 Msa0094060:exon 35.0%
ATTCGTATTGTGTTATCTCG+TGG + chr1_2:77163136-77163155 Msa0094060:three_prime_UTR 35.0%
AGAACATTGAACTCCGAATT+CGG + chr1_2:77163189-77163208 Msa0094060:three_prime_UTR 35.0%
TTCAACCCTCATTCATCAAT+AGG + chr1_2:77161216-77161235 Msa0094060:five_prime_UTR 35.0%
TCAACCCTCATTCATCAATA+GGG + chr1_2:77161217-77161236 Msa0094060:five_prime_UTR 35.0%
ATGACCCTATTGATGAATGA+GGG - chr1_2:77161224-77161243 None:intergenic 35.0%
AATGACCCTATTGATGAATG+AGG - chr1_2:77161225-77161244 None:intergenic 35.0%
TAACAACACTAGGTTTCTGA+AGG - chr1_2:77161310-77161329 None:intergenic 35.0%
!!! TTGCATTTGTGTTTTTGGGA+TGG + chr1_2:77161380-77161399 Msa0094060:CDS 35.0%
!!! TGCATTTGTGTTTTTGGGAT+GGG + chr1_2:77161381-77161400 Msa0094060:CDS 35.0%
ACAAGATGATACTGTTGTTC+CGG + chr1_2:77161411-77161430 Msa0094060:CDS 35.0%
AAAGCTAACTATCCTCCTTA+TGG + chr1_2:77161499-77161518 Msa0094060:CDS 35.0%
CTAACAAAGTCTCTTCCATA+AGG - chr1_2:77161517-77161536 None:intergenic 35.0%
!! GAAGTGTTGAAGGTCTTAAA+AGG - chr1_2:77161696-77161715 None:intergenic 35.0%
! TCTTTTTGTAGCTGATACAC+TGG + chr1_2:77161761-77161780 Msa0094060:intron 35.0%
! CTTTTTGTAGCTGATACACT+GGG + chr1_2:77161762-77161781 Msa0094060:intron 35.0%
TGCATCTGGTTATGATGAAA+AGG + chr1_2:77161866-77161885 Msa0094060:CDS 35.0%
ATACCAAAGTAAGCTTTCCA+AGG + chr1_2:77162017-77162036 Msa0094060:CDS 35.0%
AGGTATGCAGAATATTGATC+AGG - chr1_2:77162162-77162181 None:intergenic 35.0%
TTGTTTGGATTCCATGAGAA+AGG + chr1_2:77162442-77162461 Msa0094060:CDS 35.0%
!! TTGTGCATCATTGTTGATTC+TGG - chr1_2:77162476-77162495 None:intergenic 35.0%
AGAATCAACAATGATGCACA+AGG + chr1_2:77162475-77162494 Msa0094060:CDS 35.0%
AAGACAACAATCTTAAGACC+AGG - chr1_2:77162550-77162569 None:intergenic 35.0%
GATTGAACAAGTTCATAGAG+AGG - chr1_2:77162586-77162605 None:intergenic 35.0%
GTTCAATCCCCTTCAAAATT+TGG + chr1_2:77162598-77162617 Msa0094060:CDS 35.0%
! GTGACATTCAATAGGTTTTG+CGG + chr1_2:77162702-77162721 Msa0094060:intron 35.0%
ATACTGAGTTGCATTAGAAC+AGG - chr1_2:77162803-77162822 None:intergenic 35.0%
! ATGCAACTCAGTATGTGTTT+TGG + chr1_2:77162809-77162828 Msa0094060:CDS 35.0%
! TGCAACTCAGTATGTGTTTT+GGG + chr1_2:77162810-77162829 Msa0094060:CDS 35.0%
! TTATCGGTTAAGGATTCATG+CGG + chr1_2:77162902-77162921 Msa0094060:exon 35.0%
ATTCGTATTGTGTTATCTCG+TGG + chr1_2:77163136-77163155 Msa0094060:three_prime_UTR 35.0%
AGAACATTGAACTCCGAATT+CGG + chr1_2:77163189-77163208 Msa0094060:three_prime_UTR 35.0%
GATGAATGAGGGTTGAAGTT+GGG - chr1_2:77161213-77161232 None:intergenic 40.0%
TGATGAATGAGGGTTGAAGT+TGG - chr1_2:77161214-77161233 None:intergenic 40.0%
TCTCTCTAGCTAACAACACT+AGG - chr1_2:77161320-77161339 None:intergenic 40.0%
!!! GCATTTGTGTTTTTGGGATG+GGG + chr1_2:77161382-77161401 Msa0094060:CDS 40.0%
!!! CATTTGTGTTTTTGGGATGG+GGG + chr1_2:77161383-77161402 Msa0094060:CDS 40.0%
ACAAAGTCTCTTCCATAAGG+AGG - chr1_2:77161514-77161533 None:intergenic 40.0%
TTTGTTAGCCATAAACCCAC+TGG + chr1_2:77161529-77161548 Msa0094060:CDS 40.0%
TTGTTAGCCATAAACCCACT+GGG + chr1_2:77161530-77161549 Msa0094060:CDS 40.0%
TTCTCCATGGGTTTGAATCT+CGG + chr1_2:77161669-77161688 Msa0094060:intron 40.0%
!!! GGTTTTTTCCTGTTGCTTGA+GGG - chr1_2:77161818-77161837 None:intergenic 40.0%
!!! AGGTTTTTTCCTGTTGCTTG+AGG - chr1_2:77161819-77161838 None:intergenic 40.0%
! AATTTTGCTTCAGCTGCATC+TGG + chr1_2:77161852-77161871 Msa0094060:CDS 40.0%
CTACCTTGGAAAGCTTACTT+TGG - chr1_2:77162023-77162042 None:intergenic 40.0%
! CTTTTTACTTCCAGCTACCT+TGG - chr1_2:77162037-77162056 None:intergenic 40.0%
CAAGGTAGCTGGAAGTAAAA+AGG + chr1_2:77162035-77162054 Msa0094060:CDS 40.0%
AAACTCCAAAAGCAACTTCC+TGG + chr1_2:77162529-77162548 Msa0094060:CDS 40.0%
!! TAAGACCAGGAAGTTGCTTT+TGG - chr1_2:77162537-77162556 None:intergenic 40.0%
! ACATTCAATAGGTTTTGCGG+AGG + chr1_2:77162705-77162724 Msa0094060:intron 40.0%
TTGTGCAATCAAAAGTCACC+AGG + chr1_2:77162775-77162794 Msa0094060:CDS 40.0%
TCAATGCATCAGCTAGAACT+TGG - chr1_2:77162864-77162883 None:intergenic 40.0%
!! GCTGATGCATTGATTGAACA+AGG + chr1_2:77162871-77162890 Msa0094060:CDS 40.0%
! GAACAAGGCATAAGCCTTAT+CGG + chr1_2:77162886-77162905 Msa0094060:CDS 40.0%
GCATGAATCCTTAACCGATA+AGG - chr1_2:77162903-77162922 None:intergenic 40.0%
GATTAGCACAATGACCAAGA+TGG - chr1_2:77163167-77163186 None:intergenic 40.0%
GAACATTGAACTCCGAATTC+GGG + chr1_2:77163190-77163209 Msa0094060:three_prime_UTR 40.0%
TCCGAATTCGGGATGAAATA+TGG + chr1_2:77163201-77163220 Msa0094060:three_prime_UTR 40.0%
GATGAATGAGGGTTGAAGTT+GGG - chr1_2:77161213-77161232 None:intergenic 40.0%
TGATGAATGAGGGTTGAAGT+TGG - chr1_2:77161214-77161233 None:intergenic 40.0%
TCTCTCTAGCTAACAACACT+AGG - chr1_2:77161320-77161339 None:intergenic 40.0%
!!! GCATTTGTGTTTTTGGGATG+GGG + chr1_2:77161382-77161401 Msa0094060:CDS 40.0%
!!! CATTTGTGTTTTTGGGATGG+GGG + chr1_2:77161383-77161402 Msa0094060:CDS 40.0%
ACAAAGTCTCTTCCATAAGG+AGG - chr1_2:77161514-77161533 None:intergenic 40.0%
TTTGTTAGCCATAAACCCAC+TGG + chr1_2:77161529-77161548 Msa0094060:CDS 40.0%
TTGTTAGCCATAAACCCACT+GGG + chr1_2:77161530-77161549 Msa0094060:CDS 40.0%
TTCTCCATGGGTTTGAATCT+CGG + chr1_2:77161669-77161688 Msa0094060:intron 40.0%
!!! GGTTTTTTCCTGTTGCTTGA+GGG - chr1_2:77161818-77161837 None:intergenic 40.0%
!!! AGGTTTTTTCCTGTTGCTTG+AGG - chr1_2:77161819-77161838 None:intergenic 40.0%
! AATTTTGCTTCAGCTGCATC+TGG + chr1_2:77161852-77161871 Msa0094060:CDS 40.0%
CTACCTTGGAAAGCTTACTT+TGG - chr1_2:77162023-77162042 None:intergenic 40.0%
! CTTTTTACTTCCAGCTACCT+TGG - chr1_2:77162037-77162056 None:intergenic 40.0%
CAAGGTAGCTGGAAGTAAAA+AGG + chr1_2:77162035-77162054 Msa0094060:CDS 40.0%
AAACTCCAAAAGCAACTTCC+TGG + chr1_2:77162529-77162548 Msa0094060:CDS 40.0%
!! TAAGACCAGGAAGTTGCTTT+TGG - chr1_2:77162537-77162556 None:intergenic 40.0%
! ACATTCAATAGGTTTTGCGG+AGG + chr1_2:77162705-77162724 Msa0094060:intron 40.0%
TTGTGCAATCAAAAGTCACC+AGG + chr1_2:77162775-77162794 Msa0094060:CDS 40.0%
TCAATGCATCAGCTAGAACT+TGG - chr1_2:77162864-77162883 None:intergenic 40.0%
!! GCTGATGCATTGATTGAACA+AGG + chr1_2:77162871-77162890 Msa0094060:CDS 40.0%
! GAACAAGGCATAAGCCTTAT+CGG + chr1_2:77162886-77162905 Msa0094060:CDS 40.0%
GCATGAATCCTTAACCGATA+AGG - chr1_2:77162903-77162922 None:intergenic 40.0%
GATTAGCACAATGACCAAGA+TGG - chr1_2:77163167-77163186 None:intergenic 40.0%
GAACATTGAACTCCGAATTC+GGG + chr1_2:77163190-77163209 Msa0094060:three_prime_UTR 40.0%
! AAAACCTCCCAGTGGGTTTA+TGG - chr1_2:77161540-77161559 None:intergenic 45.0%
TATCTTAGCCCTCAAGCAAC+AGG + chr1_2:77161807-77161826 Msa0094060:CDS 45.0%
AGTAAGCTTTCCAAGGTAGC+TGG + chr1_2:77162024-77162043 Msa0094060:CDS 45.0%
GGTGCATTGTACCTATTGAG+TGG + chr1_2:77162075-77162094 Msa0094060:CDS 45.0%
GCATTGTACCTATTGAGTGG+TGG + chr1_2:77162078-77162097 Msa0094060:CDS 45.0%
CACTACTTCCACCACTCAAT+AGG - chr1_2:77162089-77162108 None:intergenic 45.0%
AGTGACTTCACTACCACCAT+TGG + chr1_2:77162396-77162415 Msa0094060:CDS 45.0%
GTGACTTCACTACCACCATT+GGG + chr1_2:77162397-77162416 Msa0094060:CDS 45.0%
ACAAAGTCCTTGTAGCAGGT+AGG - chr1_2:77162426-77162445 None:intergenic 45.0%
CCAAACAAAGTCCTTGTAGC+AGG - chr1_2:77162430-77162449 None:intergenic 45.0%
CCTGCTACAAGGACTTTGTT+TGG + chr1_2:77162427-77162446 Msa0094060:CDS 45.0%
TGGTGACACAACCTTTCTCA+TGG - chr1_2:77162456-77162475 None:intergenic 45.0%
GTTGCATTAGAACAGGTTCC+TGG - chr1_2:77162796-77162815 None:intergenic 45.0%
ACTTGGTTAGCAGCTTCTGA+AGG - chr1_2:77162847-77162866 None:intergenic 45.0%
! GGCATAAGCCTTATCGGTTA+AGG + chr1_2:77162892-77162911 Msa0094060:CDS 45.0%
ATCTCGTGGAAACACCATCT+TGG + chr1_2:77163150-77163169 Msa0094060:three_prime_UTR 45.0%
! AAAACCTCCCAGTGGGTTTA+TGG - chr1_2:77161540-77161559 None:intergenic 45.0%
TATCTTAGCCCTCAAGCAAC+AGG + chr1_2:77161807-77161826 Msa0094060:CDS 45.0%
AGTAAGCTTTCCAAGGTAGC+TGG + chr1_2:77162024-77162043 Msa0094060:CDS 45.0%
GGTGCATTGTACCTATTGAG+TGG + chr1_2:77162075-77162094 Msa0094060:CDS 45.0%
GCATTGTACCTATTGAGTGG+TGG + chr1_2:77162078-77162097 Msa0094060:CDS 45.0%
CACTACTTCCACCACTCAAT+AGG - chr1_2:77162089-77162108 None:intergenic 45.0%
AGTGACTTCACTACCACCAT+TGG + chr1_2:77162396-77162415 Msa0094060:CDS 45.0%
GTGACTTCACTACCACCATT+GGG + chr1_2:77162397-77162416 Msa0094060:CDS 45.0%
ACAAAGTCCTTGTAGCAGGT+AGG - chr1_2:77162426-77162445 None:intergenic 45.0%
CCAAACAAAGTCCTTGTAGC+AGG - chr1_2:77162430-77162449 None:intergenic 45.0%
CCTGCTACAAGGACTTTGTT+TGG + chr1_2:77162427-77162446 Msa0094060:CDS 45.0%
TGGTGACACAACCTTTCTCA+TGG - chr1_2:77162456-77162475 None:intergenic 45.0%
GTTGCATTAGAACAGGTTCC+TGG - chr1_2:77162796-77162815 None:intergenic 45.0%
ACTTGGTTAGCAGCTTCTGA+AGG - chr1_2:77162847-77162866 None:intergenic 45.0%
! GGCATAAGCCTTATCGGTTA+AGG + chr1_2:77162892-77162911 Msa0094060:CDS 45.0%
ATCTCGTGGAAACACCATCT+TGG + chr1_2:77163150-77163169 Msa0094060:three_prime_UTR 45.0%
!!! ATTGTAATTTTTTTTTTAAT+AGG + chr1_2:77161631-77161650 Msa0094060:intron 5.0%
!!! TTTCTAAAATTTTATTTAAT+AGG - chr1_2:77162978-77162997 None:intergenic 5.0%
!!! ATTGTAATTTTTTTTTTAAT+AGG + chr1_2:77161631-77161650 Msa0094060:intron 5.0%
!!! TTTCTAAAATTTTATTTAAT+AGG - chr1_2:77162978-77162997 None:intergenic 5.0%
TCACCAAACGTCACGATTGC+CGG - chr1_2:77161433-77161452 None:intergenic 50.0%
TTAGCCATAAACCCACTGGG+AGG + chr1_2:77161533-77161552 Msa0094060:CDS 50.0%
CCATTGCAAAACCTCCCAGT+GGG - chr1_2:77161547-77161566 None:intergenic 50.0%
GCTTGAGGGCTAAGATATGC+AGG - chr1_2:77161804-77161823 None:intergenic 50.0%
! CAATAGGTTTTGCGGAGGCA+AGG + chr1_2:77162710-77162729 Msa0094060:intron 50.0%
TCACCAAACGTCACGATTGC+CGG - chr1_2:77161433-77161452 None:intergenic 50.0%
TTAGCCATAAACCCACTGGG+AGG + chr1_2:77161533-77161552 Msa0094060:CDS 50.0%
CCATTGCAAAACCTCCCAGT+GGG - chr1_2:77161547-77161566 None:intergenic 50.0%
GCTTGAGGGCTAAGATATGC+AGG - chr1_2:77161804-77161823 None:intergenic 50.0%
! CAATAGGTTTTGCGGAGGCA+AGG + chr1_2:77162710-77162729 Msa0094060:intron 50.0%
GTTCCGGCAATCGTGACGTT+TGG + chr1_2:77161427-77161446 Msa0094060:CDS 55.0%
! GACGTTTGGTGACTCTGCTG+TGG + chr1_2:77161441-77161460 Msa0094060:CDS 55.0%
TGGTGACTCTGCTGTGGATG+TGG + chr1_2:77161447-77161466 Msa0094060:CDS 55.0%
GGTGACTCTGCTGTGGATGT+GGG + chr1_2:77161448-77161467 Msa0094060:CDS 55.0%
GTGACTCTGCTGTGGATGTG+GGG + chr1_2:77161449-77161468 Msa0094060:CDS 55.0%
! CCCACTGGGAGGTTTTGCAA+TGG + chr1_2:77161544-77161563 Msa0094060:CDS 55.0%
GCCATTGCAAAACCTCCCAG+TGG - chr1_2:77161548-77161567 None:intergenic 55.0%
AGGGCCGAGATTCAAACCCA+TGG - chr1_2:77161676-77161695 None:intergenic 55.0%
GTAGCAGGTAGGCAACCCAA+TGG - chr1_2:77162415-77162434 None:intergenic 55.0%
TGGGTTGCCTACCTGCTACA+AGG + chr1_2:77162416-77162435 Msa0094060:CDS 55.0%
! GGTTTTGCGGAGGCAAGGAA+AGG + chr1_2:77162715-77162734 Msa0094060:intron 55.0%
AGGAAAGGCTGCTGTGGAAC+TGG + chr1_2:77162730-77162749 Msa0094060:CDS 55.0%
GGAAAGGCTGCTGTGGAACT+GGG + chr1_2:77162731-77162750 Msa0094060:CDS 55.0%
GTTCCGGCAATCGTGACGTT+TGG + chr1_2:77161427-77161446 Msa0094060:CDS 55.0%
! GACGTTTGGTGACTCTGCTG+TGG + chr1_2:77161441-77161460 Msa0094060:CDS 55.0%
TGGTGACTCTGCTGTGGATG+TGG + chr1_2:77161447-77161466 Msa0094060:CDS 55.0%
GGTGACTCTGCTGTGGATGT+GGG + chr1_2:77161448-77161467 Msa0094060:CDS 55.0%
GTGACTCTGCTGTGGATGTG+GGG + chr1_2:77161449-77161468 Msa0094060:CDS 55.0%
! CCCACTGGGAGGTTTTGCAA+TGG + chr1_2:77161544-77161563 Msa0094060:CDS 55.0%
GCCATTGCAAAACCTCCCAG+TGG - chr1_2:77161548-77161567 None:intergenic 55.0%
AGGGCCGAGATTCAAACCCA+TGG - chr1_2:77161676-77161695 None:intergenic 55.0%
GTAGCAGGTAGGCAACCCAA+TGG - chr1_2:77162415-77162434 None:intergenic 55.0%
TGGGTTGCCTACCTGCTACA+AGG + chr1_2:77162416-77162435 Msa0094060:CDS 55.0%
! GGTTTTGCGGAGGCAAGGAA+AGG + chr1_2:77162715-77162734 Msa0094060:intron 55.0%
AGGAAAGGCTGCTGTGGAAC+TGG + chr1_2:77162730-77162749 Msa0094060:CDS 55.0%
GGAAAGGCTGCTGTGGAACT+GGG + chr1_2:77162731-77162750 Msa0094060:CDS 55.0%
GCAGGTAGGCAACCCAATGG+TGG - chr1_2:77162412-77162431 None:intergenic 60.0%
GAGGCAAGGAAAGGCTGCTG+TGG + chr1_2:77162724-77162743 Msa0094060:CDS 60.0%
GCAGGTAGGCAACCCAATGG+TGG - chr1_2:77162412-77162431 None:intergenic 60.0%
GAGGCAAGGAAAGGCTGCTG+TGG + chr1_2:77162724-77162743 Msa0094060:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77161205 77163223 77161205 ID=Msa0094060;Name=Msa0094060
chr1_2 mRNA 77161205 77163223 77161205 ID=Msa0094060-mRNA-1;Parent=Msa0094060;Name=Msa0094060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|5|311|354
chr1_2 exon 77161205 77161589 77161205 ID=Msa0094060-mRNA-1:exon:27264;Parent=Msa0094060-mRNA-1
chr1_2 exon 77161772 77161902 77161772 ID=Msa0094060-mRNA-1:exon:27265;Parent=Msa0094060-mRNA-1
chr1_2 exon 77161976 77162209 77161976 ID=Msa0094060-mRNA-1:exon:27266;Parent=Msa0094060-mRNA-1
chr1_2 exon 77162364 77162619 77162364 ID=Msa0094060-mRNA-1:exon:27267;Parent=Msa0094060-mRNA-1
chr1_2 exon 77162716 77163223 77162716 ID=Msa0094060-mRNA-1:exon:27268;Parent=Msa0094060-mRNA-1
chr1_2 five_prime_UTR 77161205 77161342 77161205 ID=Msa0094060-mRNA-1:five_prime_utr;Parent=Msa0094060-mRNA-1
chr1_2 CDS 77161343 77161589 77161343 ID=Msa0094060-mRNA-1:cds;Parent=Msa0094060-mRNA-1
chr1_2 CDS 77161772 77161902 77161772 ID=Msa0094060-mRNA-1:cds;Parent=Msa0094060-mRNA-1
chr1_2 CDS 77161976 77162209 77161976 ID=Msa0094060-mRNA-1:cds;Parent=Msa0094060-mRNA-1
chr1_2 CDS 77162364 77162619 77162364 ID=Msa0094060-mRNA-1:cds;Parent=Msa0094060-mRNA-1
chr1_2 CDS 77162716 77162912 77162716 ID=Msa0094060-mRNA-1:cds;Parent=Msa0094060-mRNA-1
chr1_2 three_prime_UTR 77162913 77163223 77162913 ID=Msa0094060-mRNA-1:three_prime_utr;Parent=Msa0094060-mRNA-1
Gene Sequence

>Msa0094060

ATGAAGATGAATATTAGAGAAGCATTTTTTGTTGTGTTTGCATTTGTGTTTTTGGGATGGGGGAATGCACAAGATGATACTGTTGTTCCGGCAATCGTGACGTTTGGTGACTCTGCTGTGGATGTGGGGAACAATGACTATCTTTTCACTCTTTTTAAAGCTAACTATCCTCCTTATGGAAGAGACTTTGTTAGCCATAAACCCACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATATTACTGCTGATACACTGGGTTTTAAGAGTTATGCACCTGCATATCTTAGCCCTCAAGCAACAGGAAAAAACCTTCTTATTGGAGCAAATTTTGCTTCAGCTGCATCTGGTTATGATGAAAAGGCTGCTATCTTGAATCACGCAATTCCATTGTCGCAACAGTTAAAATATTACAAGGAATACCAAAGTAAGCTTTCCAAGGTAGCTGGAAGTAAAAAGGCAGCATCAATTATTAAAGGTGCATTGTACCTATTGAGTGGTGGAAGTAGTGACTTTATCCAAAACTATTATGTCAATCCTTTAATCAACAAAGTTGTCACTCCTGATCAATATTCTGCATACCTTGTTGATACATACTCAAGTTTTGTTAAGGACTTGTATAAATTGGGAGCTAGAAAAATTGGAGTGACTTCACTACCACCATTGGGTTGCCTACCTGCTACAAGGACTTTGTTTGGATTCCATGAGAAAGGTTGTGTCACCAGAATCAACAATGATGCACAAGGATTTAACAAGAAAATCAACTCGGCTACAGCGAAACTCCAAAAGCAACTTCCTGGTCTTAAGATTGTTGTCTTTAATATTTACAAACCTCTCTATGAACTTGTTCAATCCCCTTCAAAATTTGGTTTTGCGGAGGCAAGGAAAGGCTGCTGTGGAACTGGGATTGTAGAGACGACATCCTTATTGTGCAATCAAAAGTCACCAGGAACCTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTTCATCCTTCAGAAGCTGCTAACCAAGTTCTAGCTGATGCATTGATTGAACAAGGCATAAGCCTTATCGGTTAA
Protein sequence

>Msa0094060

MKMNIREAFFVVFAFVFLGWGNAQDDTVVPAIVTFGDSAVDVGNNDYLFTLFKANYPPYGRDFVSHKPTGRFCNGKLATDITADTLGFKSYAPAYLSPQATGKNLLIGANFASAASGYDEKAAILNHAIPLSQQLKYYKEYQSKLSKVAGSKKAASIIKGALYLLSGGSSDFIQNYYVNPLINKVVTPDQYSAYLVDTYSSFVKDLYKLGARKIGVTSLPPLGCLPATRTLFGFHEKGCVTRINNDAQGFNKKINSATAKLQKQLPGLKIVVFNIYKPLYELVQSPSKFGFAEARKGCCGTGIVETTSLLCNQKSPGTCSNATQYVFWDSVHPSEAANQVLADALIEQGISLIG*