Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208560 | XP_013443468.2 | 91.922 | 359 | 24 | 2 | 1 | 358 | 1 | 355 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208560 | sp|Q9T072|BH025_ARATH | 43.814 | 194 | 106 | 2 | 166 | 357 | 136 | 328 | 3.04e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208560 | A0A396J7S7 | 91.922 | 359 | 24 | 2 | 1 | 358 | 1 | 355 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0208560 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0208560 | 0.809298 | 2.027504e-50 | -8.615850e-47 |
| Msa0030320 | Msa0208560 | 0.801321 | 9.515389e-49 | -8.615850e-47 |
| Msa0035090 | Msa0208560 | 0.804827 | 1.791943e-49 | -8.615850e-47 |
| Msa0045660 | Msa0208560 | 0.802097 | 6.593074e-49 | -8.615850e-47 |
| Msa0046670 | Msa0208560 | 0.822897 | 1.852570e-53 | -8.615850e-47 |
| Msa0046860 | Msa0208560 | 0.852984 | 3.224984e-61 | -8.615850e-47 |
| Msa0053680 | Msa0208560 | 0.800991 | 1.111681e-48 | -8.615850e-47 |
| Msa0055650 | Msa0208560 | 0.806331 | 8.666250e-50 | -8.615850e-47 |
| Msa0063850 | Msa0208560 | 0.802906 | 4.492032e-49 | -8.615850e-47 |
| Msa0072910 | Msa0208560 | 0.801252 | 9.830578e-49 | -8.615850e-47 |
| Msa0077920 | Msa0208560 | 0.801315 | 9.543866e-49 | -8.615850e-47 |
| Msa0089410 | Msa0208560 | 0.832220 | 1.070575e-55 | -8.615850e-47 |
| Msa0094060 | Msa0208560 | 0.807237 | 5.575190e-50 | -8.615850e-47 |
| Msa0112800 | Msa0208560 | 0.803822 | 2.901382e-49 | -8.615850e-47 |
| Msa0125810 | Msa0208560 | 0.809591 | 1.754030e-50 | -8.615850e-47 |
| Msa0130120 | Msa0208560 | 0.810890 | 9.206144e-51 | -8.615850e-47 |
| Msa0136520 | Msa0208560 | 0.837837 | 4.107136e-57 | -8.615850e-47 |
| Msa0143360 | Msa0208560 | 0.821371 | 4.183763e-53 | -8.615850e-47 |
| Msa0148590 | Msa0208560 | 0.820592 | 6.322851e-53 | -8.615850e-47 |
| Msa0166580 | Msa0208560 | 0.814521 | 1.476631e-51 | -8.615850e-47 |
| Msa0187560 | Msa0208560 | 0.870699 | 1.197637e-66 | -8.615850e-47 |
| Msa0187820 | Msa0208560 | 0.861949 | 7.157426e-64 | -8.615850e-47 |
| Msa0194370 | Msa0208560 | 0.811963 | 5.382032e-51 | -8.615850e-47 |
| Msa0198140 | Msa0208560 | 0.813752 | 2.183096e-51 | -8.615850e-47 |
| Msa0198220 | Msa0208560 | 0.810314 | 1.225817e-50 | -8.615850e-47 |
| Msa0201910 | Msa0208560 | 0.837560 | 4.835790e-57 | -8.615850e-47 |
| Msa0207220 | Msa0208560 | 0.812043 | 5.169229e-51 | -8.615850e-47 |
| Msa0207530 | Msa0208560 | 0.812786 | 3.558787e-51 | -8.615850e-47 |
| Msa0207900 | Msa0208560 | 0.835339 | 1.777467e-56 | -8.615850e-47 |
| Msa0208400 | Msa0208560 | 0.998483 | 2.085960e-266 | -8.615850e-47 |
| Msa0208560 | Msa0210870 | 0.803887 | 2.812665e-49 | -8.615850e-47 |
| Msa0208560 | Msa0219550 | 0.802347 | 5.857183e-49 | -8.615850e-47 |
| Msa0208560 | Msa0221940 | 0.804089 | 2.553298e-49 | -8.615850e-47 |
| Msa0208560 | Msa0229420 | 0.813548 | 2.420458e-51 | -8.615850e-47 |
| Msa0208560 | Msa0232170 | 0.806496 | 7.997374e-50 | -8.615850e-47 |
| Msa0208560 | Msa0244370 | 0.845449 | 4.033054e-59 | -8.615850e-47 |
| Msa0208560 | Msa0260960 | 0.821884 | 3.184764e-53 | -8.615850e-47 |
| Msa0208560 | Msa0263470 | 0.830007 | 3.741416e-55 | -8.615850e-47 |
| Msa0208560 | Msa0265780 | 0.808396 | 3.162326e-50 | -8.615850e-47 |
| Msa0208560 | Msa0266010 | 0.829533 | 4.880682e-55 | -8.615850e-47 |
| Msa0208560 | Msa0270640 | 0.823663 | 1.226832e-53 | -8.615850e-47 |
| Msa0208560 | Msa0278340 | 0.803751 | 3.002611e-49 | -8.615850e-47 |
| Msa0208560 | Msa0282880 | 0.853772 | 1.915736e-61 | -8.615850e-47 |
| Msa0208560 | Msa0288280 | 0.816351 | 5.782330e-52 | -8.615850e-47 |
| Msa0208560 | Msa0301060 | 0.812988 | 3.212639e-51 | -8.615850e-47 |
| Msa0208560 | Msa0301300 | 0.804606 | 1.993020e-49 | -8.615850e-47 |
| Msa0208560 | Msa0314750 | 0.817029 | 4.074587e-52 | -8.615850e-47 |
| Msa0208560 | Msa0321180 | 0.849505 | 3.097881e-60 | -8.615850e-47 |
| Msa0208560 | Msa0321200 | 0.847202 | 1.342824e-59 | -8.615850e-47 |
| Msa0208560 | Msa0334650 | 0.817162 | 3.804447e-52 | -8.615850e-47 |
| Msa0208560 | Msa0338610 | 0.843745 | 1.160266e-58 | -8.615850e-47 |
| Msa0208560 | Msa0343200 | 0.813572 | 2.392168e-51 | -8.615850e-47 |
| Msa0208560 | Msa0343460 | 0.813824 | 2.105069e-51 | -8.615850e-47 |
| Msa0208560 | Msa0359230 | 0.806811 | 6.860777e-50 | -8.615850e-47 |
| Msa0208560 | Msa0365200 | 0.822546 | 2.236169e-53 | -8.615850e-47 |
| Msa0208560 | Msa0379720 | 0.802289 | 6.020352e-49 | -8.615850e-47 |
| Msa0208560 | Msa0385400 | 0.808225 | 3.438918e-50 | -8.615850e-47 |
| Msa0208560 | Msa0415310 | 0.815821 | 7.597543e-52 | -8.615850e-47 |
| Msa0208560 | Msa0426990 | 0.805310 | 1.419950e-49 | -8.615850e-47 |
| Msa0208560 | Msa0429100 | 0.835938 | 1.253856e-56 | -8.615850e-47 |
| Msa0208560 | Msa0429130 | 0.814222 | 1.719258e-51 | -8.615850e-47 |
| Msa0208560 | Msa0429500 | 0.814770 | 1.300595e-51 | -8.615850e-47 |
| Msa0208560 | Msa0451370 | 0.831474 | 1.635274e-55 | -8.615850e-47 |
| Msa0208560 | Msa0477070 | 0.824151 | 9.429415e-54 | -8.615850e-47 |
| Msa0208560 | Msa0481620 | 0.887966 | 8.959830e-73 | -8.615850e-47 |
| Msa0208560 | Msa0486210 | 0.803570 | 3.273220e-49 | -8.615850e-47 |
| Msa0208560 | Msa0493640 | 0.817297 | 3.547630e-52 | -8.615850e-47 |
| Msa0208560 | Msa0517360 | 0.803863 | 2.845160e-49 | -8.615850e-47 |
| Msa0208560 | Msa0521440 | 0.819921 | 9.010620e-53 | -8.615850e-47 |
| Msa0208560 | Msa0542030 | 0.840155 | 1.031188e-57 | -8.615850e-47 |
| Msa0208560 | Msa0548720 | 0.828608 | 8.179829e-55 | -8.615850e-47 |
| Msa0208560 | Msa0550870 | 0.816773 | 4.651211e-52 | -8.615850e-47 |
| Msa0208560 | Msa0563230 | 0.819713 | 1.005249e-52 | -8.615850e-47 |
| Msa0208560 | Msa0570310 | 0.816420 | 5.580620e-52 | -8.615850e-47 |
| Msa0208560 | Msa0585930 | 0.810612 | 1.057142e-50 | -8.615850e-47 |
| Msa0208560 | Msa0587060 | 0.814810 | 1.274772e-51 | -8.615850e-47 |
| Msa0208560 | Msa0595240 | 0.800397 | 1.469127e-48 | -8.615850e-47 |
| Msa0208560 | Msa0598260 | 0.803344 | 3.646523e-49 | -8.615850e-47 |
| Msa0208560 | Msa0610850 | 0.806030 | 1.002530e-49 | -8.615850e-47 |
| Msa0208560 | Msa0619480 | 0.813070 | 3.082570e-51 | -8.615850e-47 |
| Msa0208560 | Msa0622400 | 0.829507 | 4.953955e-55 | -8.615850e-47 |
| Msa0208560 | Msa0622690 | 0.803174 | 3.952923e-49 | -8.615850e-47 |
| Msa0208560 | Msa0623480 | 0.810180 | 1.310532e-50 | -8.615850e-47 |
| Msa0208560 | Msa0626890 | 0.801721 | 7.876063e-49 | -8.615850e-47 |
| Msa0208560 | Msa0637910 | 0.808789 | 2.606300e-50 | -8.615850e-47 |
| Msa0208560 | Msa0664110 | 0.838634 | 2.559425e-57 | -8.615850e-47 |
| Msa0208560 | Msa0664130 | 0.833203 | 6.101468e-56 | -8.615850e-47 |
| Msa0208560 | Msa0665010 | 0.813972 | 1.952347e-51 | -8.615850e-47 |
| Msa0208560 | Msa0684910 | 0.804522 | 2.074782e-49 | -8.615850e-47 |
| Msa0208560 | Msa0691150 | 0.819620 | 1.055526e-52 | -8.615850e-47 |
| Msa0208560 | Msa0713590 | 0.888580 | 5.204333e-73 | -8.615850e-47 |
| Msa0208560 | Msa0714930 | 0.803985 | 2.684350e-49 | -8.615850e-47 |
| Msa0208560 | Msa0747660 | 0.821789 | 3.348915e-53 | -8.615850e-47 |
| Msa0208560 | Msa0749130 | 0.887306 | 1.602209e-72 | -8.615850e-47 |
| Msa0208560 | Msa0755530 | 0.891968 | 2.445015e-74 | -8.615850e-47 |
| Msa0208560 | Msa0756940 | 0.805775 | 1.134279e-49 | -8.615850e-47 |
| Msa0208560 | Msa0797210 | 0.904572 | 1.066856e-79 | -8.615850e-47 |
| Msa0208560 | Msa0835070 | 0.896311 | 4.166054e-76 | -8.615850e-47 |
| Msa0208560 | Msa0836510 | 0.808072 | 3.707135e-50 | -8.615850e-47 |
| Msa0208560 | Msa0866960 | 0.805235 | 1.472109e-49 | -8.615850e-47 |
| Msa0208560 | Msa0868140 | 0.807765 | 4.308832e-50 | -8.615850e-47 |
| Msa0208560 | Msa0930090 | 0.806069 | 9.837677e-50 | -8.615850e-47 |
| Msa0208560 | Msa0938190 | 0.814935 | 1.195649e-51 | -8.615850e-47 |
| Msa0208560 | Msa0951630 | 0.845964 | 2.922801e-59 | -8.615850e-47 |
| Msa0208560 | Msa0968010 | 0.809439 | 1.891646e-50 | -8.615850e-47 |
| Msa0208560 | Msa0982810 | 0.819575 | 1.080631e-52 | -8.615850e-47 |
| Msa0208560 | Msa0988420 | 0.811082 | 8.362847e-51 | -8.615850e-47 |
| Msa0208560 | Msa0998900 | 0.823405 | 1.410215e-53 | -8.615850e-47 |
| Msa0208560 | Msa1008960 | 0.813986 | 1.938451e-51 | -8.615850e-47 |
| Msa0208560 | Msa1018720 | 0.835271 | 1.848858e-56 | -8.615850e-47 |
| Msa0208560 | Msa1018730 | 0.844346 | 8.004844e-59 | -8.615850e-47 |
| Msa0208560 | Msa1025600 | 0.823768 | 1.159627e-53 | -8.615850e-47 |
| Msa0208560 | Msa1025630 | 0.820813 | 5.625743e-53 | -8.615850e-47 |
| Msa0208560 | Msa1031220 | 0.808554 | 2.925401e-50 | -8.615850e-47 |
| Msa0208560 | Msa1038420 | 0.856167 | 3.862597e-62 | -8.615850e-47 |
| Msa0208560 | Msa1042380 | 0.819978 | 8.743901e-53 | -8.615850e-47 |
| Msa0208560 | Msa1044450 | 0.828850 | 7.148765e-55 | -8.615850e-47 |
| Msa0208560 | Msa1050320 | 0.802480 | 5.499513e-49 | -8.615850e-47 |
| Msa0208560 | Msa1064440 | 0.815900 | 7.295340e-52 | -8.615850e-47 |
| Msa0208560 | Msa1103610 | 0.848536 | 5.758349e-60 | -8.615850e-47 |
| Msa0208560 | Msa1122920 | 0.808152 | 3.564610e-50 | -8.615850e-47 |
| Msa0208560 | Msa1125100 | 0.805583 | 1.244490e-49 | -8.615850e-47 |
| Msa0208560 | Msa1125150 | 0.806338 | 8.635911e-50 | -8.615850e-47 |
| Msa0208560 | Msa1129150 | 0.802596 | 5.205871e-49 | -8.615850e-47 |
| Msa0208560 | Msa1129320 | 0.876422 | 1.414340e-68 | -8.615850e-47 |
| Msa0208560 | Msa1147190 | 0.843427 | 1.411015e-58 | -8.615850e-47 |
| Msa0208560 | Msa1147200 | 0.836240 | 1.050899e-56 | -8.615850e-47 |
| Msa0208560 | Msa1151970 | 0.815885 | 7.351337e-52 | -8.615850e-47 |
| Msa0208560 | Msa1172070 | 0.813778 | 2.154993e-51 | -8.615850e-47 |
| Msa0208560 | Msa1172120 | 0.810017 | 1.420407e-50 | -8.615850e-47 |
| Msa0208560 | Msa1177360 | 0.810350 | 1.204140e-50 | -8.615850e-47 |
| Msa0208560 | Msa1178470 | 0.808086 | 3.680427e-50 | -8.615850e-47 |
| Msa0208560 | Msa1203090 | 0.802355 | 5.834338e-49 | -8.615850e-47 |
| Msa0208560 | Msa1203210 | 0.822288 | 2.566493e-53 | -8.615850e-47 |
| Msa0208560 | Msa1203720 | 0.806109 | 9.651506e-50 | -8.615850e-47 |
| Msa0208560 | Msa1204390 | 0.809294 | 2.031637e-50 | -8.615850e-47 |
| Msa0208560 | Msa1217020 | 0.811213 | 7.834744e-51 | -8.615850e-47 |
| Msa0208560 | Msa1217170 | 0.827238 | 1.746589e-54 | -8.615850e-47 |
| Msa0208560 | Msa1236740 | 0.837837 | 4.105774e-57 | -8.615850e-47 |
| Msa0208560 | Msa1262630 | 0.807666 | 4.521223e-50 | -8.615850e-47 |
| Msa0208560 | Msa1262740 | 0.804016 | 2.644356e-49 | -8.615850e-47 |
| Msa0208560 | Msa1264230 | 0.821986 | 3.014888e-53 | -8.615850e-47 |
| Msa0208560 | Msa1296610 | 0.810026 | 1.414170e-50 | -8.615850e-47 |
| Msa0208560 | Msa1302920 | 0.820350 | 7.184329e-53 | -8.615850e-47 |
| Msa0208560 | Msa1329020 | 0.809155 | 2.175723e-50 | -8.615850e-47 |
| Msa0208560 | Msa1330900 | 0.810059 | 1.391239e-50 | -8.615850e-47 |
| Msa0208560 | Msa1343540 | 0.815526 | 8.838368e-52 | -8.615850e-47 |
| Msa0208560 | Msa1344870 | 0.818944 | 1.504852e-52 | -8.615850e-47 |
| Msa0208560 | Msa1344880 | 0.811205 | 7.865363e-51 | -8.615850e-47 |
| Msa0208560 | Msa1346920 | 0.814562 | 1.446054e-51 | -8.615850e-47 |
| Msa0208560 | Msa1351560 | 0.824958 | 6.086291e-54 | -8.615850e-47 |
| Msa0208560 | Msa1357380 | 0.804519 | 2.077400e-49 | -8.615850e-47 |
| Msa0208560 | Msa1371840 | 0.807642 | 4.574797e-50 | -8.615850e-47 |
| Msa0208560 | Msa1379070 | 0.804767 | 1.844411e-49 | -8.615850e-47 |
| Msa0208560 | Msa1379090 | 0.807918 | 3.997431e-50 | -8.615850e-47 |
| Msa0208560 | Msa1391600 | 0.824265 | 8.865208e-54 | -8.615850e-47 |
| Msa0208560 | Msa1397550 | 0.841971 | 3.437469e-58 | -8.615850e-47 |
| Msa0208560 | Msa1419040 | 0.824316 | 8.622054e-54 | -8.615850e-47 |
| Msa0208560 | Msa1433380 | 0.805654 | 1.202885e-49 | -8.615850e-47 |
| Msa0208560 | Msa1439160 | 0.824867 | 6.394756e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208560 | MtrunA17_Chr2g0307131 | 91.922 | 359 | 24 | 2 | 1 | 358 | 1 | 355 | 0.0 | 639 |
| Msa0208560 | MtrunA17_Chr2g0307141 | 88.736 | 364 | 32 | 4 | 1 | 359 | 1 | 360 | 0.0 | 597 |
| Msa0208560 | MtrunA17_Chr6g0468491 | 70.588 | 340 | 71 | 5 | 23 | 359 | 1 | 314 | 3.34e-163 | 459 |
| Msa0208560 | MtrunA17_Chr4g0033391 | 66.295 | 359 | 79 | 7 | 1 | 357 | 1 | 319 | 6.68e-152 | 431 |
| Msa0208560 | MtrunA17_Chr6g0468461 | 64.841 | 347 | 86 | 5 | 1 | 342 | 1 | 316 | 6.07e-143 | 409 |
| Msa0208560 | MtrunA17_Chr4g0033291 | 64.800 | 375 | 70 | 9 | 1 | 359 | 1 | 329 | 5.05e-142 | 405 |
| Msa0208560 | MtrunA17_Chr4g0033281 | 64.075 | 373 | 71 | 6 | 1 | 358 | 1 | 325 | 1.17e-139 | 400 |
| Msa0208560 | MtrunA17_Chr4g0054581 | 60.825 | 388 | 114 | 9 | 1 | 359 | 1 | 379 | 1.79e-138 | 399 |
| Msa0208560 | MtrunA17_Chr4g0054621 | 50.949 | 369 | 144 | 10 | 1 | 359 | 1 | 342 | 5.46e-106 | 314 |
| Msa0208560 | MtrunA17_Chr7g0225901 | 62.992 | 254 | 62 | 4 | 86 | 334 | 14 | 240 | 1.11e-101 | 300 |
| Msa0208560 | MtrunA17_Chr5g0400621 | 40.556 | 360 | 150 | 8 | 17 | 358 | 20 | 333 | 5.76e-64 | 206 |
| Msa0208560 | MtrunA17_Chr5g0400641 | 56.875 | 160 | 61 | 2 | 185 | 340 | 1 | 156 | 2.43e-50 | 166 |
| Msa0208560 | MtrunA17_Chr2g0280161 | 45.320 | 203 | 104 | 3 | 162 | 357 | 151 | 353 | 1.70e-48 | 167 |
| Msa0208560 | MtrunA17_Chr4g0002801 | 39.044 | 251 | 132 | 4 | 112 | 355 | 95 | 331 | 1.24e-46 | 161 |
| Msa0208560 | MtrunA17_Chr5g0400661 | 34.444 | 360 | 184 | 10 | 10 | 350 | 4 | 330 | 3.05e-46 | 160 |
| Msa0208560 | MtrunA17_Chr4g0054551 | 38.247 | 251 | 136 | 4 | 115 | 349 | 73 | 320 | 6.76e-44 | 154 |
| Msa0208560 | MtrunA17_Chr4g0054561 | 36.452 | 310 | 159 | 9 | 70 | 349 | 19 | 320 | 1.62e-43 | 153 |
| Msa0208560 | MtrunA17_Chr4g0002781 | 38.554 | 249 | 136 | 4 | 114 | 355 | 112 | 350 | 3.98e-43 | 152 |
| Msa0208560 | MtrunA17_Chr2g0333641 | 38.136 | 236 | 130 | 6 | 127 | 349 | 70 | 302 | 1.47e-42 | 150 |
| Msa0208560 | MtrunA17_Chr2g0333621 | 37.344 | 241 | 141 | 4 | 121 | 358 | 82 | 315 | 9.63e-42 | 148 |
| Msa0208560 | MtrunA17_Chr4g0049331 | 43.575 | 179 | 101 | 0 | 172 | 350 | 125 | 303 | 3.64e-41 | 146 |
| Msa0208560 | MtrunA17_Chr8g0336681 | 32.468 | 308 | 165 | 7 | 84 | 355 | 36 | 336 | 8.01e-40 | 144 |
| Msa0208560 | MtrunA17_Chr4g0054571 | 45.500 | 200 | 94 | 4 | 162 | 350 | 130 | 325 | 4.11e-39 | 141 |
| Msa0208560 | MtrunA17_Chr5g0400671 | 35.743 | 249 | 146 | 4 | 114 | 351 | 75 | 320 | 7.89e-38 | 138 |
| Msa0208560 | MtrunA17_Chr2g0333541 | 35.821 | 268 | 155 | 5 | 100 | 353 | 3 | 267 | 6.52e-36 | 132 |
| Msa0208560 | MtrunA17_Chr7g0249811 | 39.487 | 195 | 108 | 2 | 161 | 355 | 145 | 329 | 1.40e-35 | 132 |
| Msa0208560 | MtrunA17_Chr2g0333611 | 33.945 | 218 | 140 | 3 | 140 | 356 | 3 | 217 | 6.44e-35 | 127 |
| Msa0208560 | MtrunA17_Chr4g0002851 | 36.601 | 153 | 65 | 2 | 205 | 350 | 65 | 192 | 9.45e-23 | 94.4 |
| Msa0208560 | MtrunA17_Chr4g0002831 | 37.126 | 167 | 77 | 5 | 193 | 350 | 53 | 200 | 1.54e-22 | 94.0 |
| Msa0208560 | MtrunA17_Chr7g0233441 | 36.986 | 146 | 82 | 2 | 205 | 350 | 57 | 192 | 2.36e-22 | 93.2 |
| Msa0208560 | MtrunA17_Chr1g0185621 | 33.103 | 145 | 83 | 3 | 182 | 315 | 475 | 616 | 1.49e-18 | 87.0 |
| Msa0208560 | MtrunA17_Chr8g0366751 | 33.939 | 165 | 95 | 3 | 168 | 318 | 445 | 609 | 3.37e-17 | 83.2 |
| Msa0208560 | MtrunA17_Chr8g0346161 | 33.088 | 136 | 82 | 3 | 182 | 311 | 291 | 423 | 1.35e-15 | 77.8 |
| Msa0208560 | MtrunA17_Chr5g0411341 | 32.402 | 179 | 79 | 6 | 168 | 318 | 476 | 640 | 2.57e-15 | 77.4 |
| Msa0208560 | MtrunA17_Chr8g0365711 | 25.946 | 185 | 110 | 4 | 161 | 331 | 227 | 398 | 8.70e-14 | 72.0 |
| Msa0208560 | MtrunA17_Chr7g0275821 | 30.435 | 161 | 100 | 3 | 179 | 335 | 245 | 397 | 1.99e-13 | 70.9 |
| Msa0208560 | MtrunA17_Chr7g0260841 | 43.333 | 90 | 42 | 2 | 155 | 235 | 319 | 408 | 6.80e-13 | 69.7 |
| Msa0208560 | MtrunA17_Chr8g0346151 | 34.188 | 117 | 67 | 3 | 182 | 291 | 279 | 392 | 1.46e-12 | 68.6 |
| Msa0208560 | MtrunA17_Chr1g0211081 | 26.606 | 218 | 128 | 6 | 133 | 318 | 264 | 481 | 3.39e-12 | 67.4 |
| Msa0208560 | MtrunA17_Chr8g0386921 | 39.726 | 73 | 44 | 0 | 174 | 246 | 398 | 470 | 8.60e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208560 | AT4G37850.2 | 43.814 | 194 | 106 | 2 | 166 | 357 | 136 | 328 | 3.09e-42 | 150 |
| Msa0208560 | AT4G37850.1 | 43.814 | 194 | 106 | 2 | 166 | 357 | 136 | 328 | 3.09e-42 | 150 |
| Msa0208560 | AT2G22760.1 | 34.364 | 291 | 152 | 7 | 86 | 350 | 14 | 291 | 1.95e-38 | 139 |
| Msa0208560 | AT2G22750.2 | 46.032 | 189 | 96 | 2 | 166 | 349 | 110 | 297 | 3.76e-37 | 136 |
| Msa0208560 | AT2G22750.3 | 46.032 | 189 | 96 | 2 | 166 | 349 | 138 | 325 | 4.23e-37 | 137 |
| Msa0208560 | AT2G22750.5 | 46.032 | 189 | 96 | 2 | 166 | 349 | 134 | 321 | 4.45e-37 | 136 |
| Msa0208560 | AT2G22750.4 | 46.032 | 189 | 95 | 3 | 166 | 349 | 138 | 324 | 6.10e-36 | 133 |
| Msa0208560 | AT2G22750.1 | 46.032 | 189 | 95 | 3 | 166 | 349 | 110 | 296 | 6.14e-36 | 133 |
| Msa0208560 | AT2G22760.2 | 33.942 | 274 | 143 | 6 | 86 | 334 | 14 | 274 | 6.13e-34 | 127 |
| Msa0208560 | AT2G22770.1 | 33.077 | 260 | 120 | 7 | 120 | 350 | 81 | 315 | 9.05e-32 | 122 |
| Msa0208560 | AT5G46760.1 | 32.394 | 213 | 111 | 8 | 151 | 338 | 388 | 592 | 1.82e-18 | 87.0 |
| Msa0208560 | AT4G17880.1 | 35.802 | 162 | 86 | 5 | 168 | 315 | 399 | 556 | 2.43e-17 | 84.0 |
| Msa0208560 | AT1G32640.1 | 32.704 | 159 | 95 | 4 | 168 | 318 | 435 | 589 | 2.60e-16 | 80.9 |
| Msa0208560 | AT1G01260.1 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.74e-14 | 75.1 |
| Msa0208560 | AT1G01260.2 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.74e-14 | 75.1 |
| Msa0208560 | AT1G01260.3 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.74e-14 | 75.1 |
| Msa0208560 | AT1G63650.3 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 2.31e-14 | 74.7 |
| Msa0208560 | AT1G63650.1 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 2.31e-14 | 74.7 |
| Msa0208560 | AT1G63650.2 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 2.31e-14 | 74.7 |
| Msa0208560 | AT2G46510.1 | 45.000 | 80 | 39 | 2 | 168 | 244 | 378 | 455 | 1.09e-13 | 72.8 |
| Msa0208560 | AT4G16430.1 | 46.154 | 78 | 39 | 1 | 168 | 242 | 303 | 380 | 1.97e-13 | 71.6 |
| Msa0208560 | AT4G09820.1 | 33.333 | 126 | 54 | 3 | 183 | 303 | 364 | 464 | 3.75e-13 | 70.9 |
| Msa0208560 | AT5G41315.3 | 28.495 | 186 | 100 | 6 | 172 | 330 | 437 | 616 | 1.69e-12 | 68.9 |
| Msa0208560 | AT5G41315.1 | 28.495 | 186 | 100 | 6 | 172 | 330 | 432 | 611 | 1.80e-12 | 68.9 |
| Msa0208560 | AT5G41315.2 | 28.495 | 186 | 100 | 6 | 172 | 330 | 440 | 619 | 2.00e-12 | 68.9 |
| Msa0208560 | AT4G00870.1 | 33.036 | 112 | 72 | 1 | 183 | 291 | 250 | 361 | 3.60e-11 | 64.7 |
| Msa0208560 | AT1G12860.1 | 28.889 | 180 | 107 | 6 | 183 | 349 | 268 | 439 | 5.89e-11 | 63.9 |
Find 58 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTAGTGGTAGGTGAATT+TGG | 0.153287 | 2_1:+44308462 | None:intergenic |
| CAAATCGAAGCAAAAGTATT+AGG | 0.159030 | 2_1:-44307867 | Msa0208560:CDS |
| AACTAGTGGTAGGTGAATTT+GGG | 0.226459 | 2_1:+44308463 | None:intergenic |
| TCTTGTTCCCAACCTTAAAA+AGG | 0.269180 | 2_1:-44308235 | Msa0208560:intron |
| AGTGGTTTGCATCTTCTTAT+AGG | 0.285856 | 2_1:+44307345 | None:intergenic |
| CAGCAGCTGGTTATCTGATT+TGG | 0.298434 | 2_1:-44310025 | Msa0208560:intron |
| CGATATTGATAAGACAATTA+TGG | 0.305371 | 2_1:-44308583 | Msa0208560:CDS |
| TTCAGTGTCTCCAACTGAAT+TGG | 0.327767 | 2_1:-44308385 | Msa0208560:CDS |
| CACCAGTATCAAGGAAATTC+AGG | 0.328339 | 2_1:+44308742 | None:intergenic |
| TAAGATAATACTATGTATAT+TGG | 0.331197 | 2_1:-44307301 | Msa0208560:three_prime_UTR |
| AAATCGAAGCAAAAGTATTA+GGG | 0.346642 | 2_1:-44307866 | Msa0208560:CDS |
| CTGCAAGAGCAATGAAGCTT+TGG | 0.357341 | 2_1:+44308259 | None:intergenic |
| AAGTGTTACTGTTGAGACTA+TGG | 0.367734 | 2_1:-44310085 | Msa0208560:exon |
| AAACAACAACGTTTAACTTC+GGG | 0.382774 | 2_1:-44308669 | Msa0208560:CDS |
| TGCATGGATAAATTATGTTT+AGG | 0.407641 | 2_1:-44307212 | Msa0208560:three_prime_UTR |
| AACCTGAATTTCCTTGATAC+TGG | 0.413104 | 2_1:-44308744 | Msa0208560:CDS |
| AAAAGGTCTCGTGCTAATAA+TGG | 0.413380 | 2_1:-44308327 | Msa0208560:CDS |
| CAAAAGATGGGATTTGAACT+TGG | 0.429625 | 2_1:+44308493 | None:intergenic |
| TAGGGAAATATATGTTGATT+CGG | 0.431533 | 2_1:-44307848 | Msa0208560:CDS |
| TCATCATCGCTGCAGAGGTC+TGG | 0.452669 | 2_1:+44307939 | None:intergenic |
| TAAACAACAACGTTTAACTT+CGG | 0.458515 | 2_1:-44308670 | Msa0208560:CDS |
| TGCAAGAGCAATGAAGCTTT+GGG | 0.460124 | 2_1:+44308260 | None:intergenic |
| GTCCCTTGTGTTCCTTACAT+TGG | 0.460906 | 2_1:+44307823 | None:intergenic |
| ATCGCTGCAGAGGTCTGGTT+TGG | 0.461442 | 2_1:+44307944 | None:intergenic |
| GGTCAAATCCAGAAAATTGT+TGG | 0.469734 | 2_1:+44308439 | None:intergenic |
| TGATATTACTATCATTGCTC+AGG | 0.480526 | 2_1:-44307715 | Msa0208560:intron |
| ATTTAGTGATGAAACAAAGT+TGG | 0.485603 | 2_1:-44308619 | Msa0208560:CDS |
| GTCAAATCCAGAAAATTGTT+GGG | 0.487558 | 2_1:+44308440 | None:intergenic |
| GAGCGCAATGAAAGTGTTGT+TGG | 0.490652 | 2_1:-44307900 | Msa0208560:CDS |
| GTTGATTCGGATCCAATGTA+AGG | 0.498122 | 2_1:-44307835 | Msa0208560:CDS |
| CGAACACAATTTATTTGTTG+AGG | 0.507704 | 2_1:-44308772 | Msa0208560:CDS |
| AATCTTCCACACCAGTATCA+AGG | 0.520277 | 2_1:+44308733 | None:intergenic |
| GATATCATTTATCGAAAATG+AGG | 0.521059 | 2_1:+44307374 | None:intergenic |
| GAGCAATGATAGTAATATCA+AGG | 0.524666 | 2_1:+44307718 | None:intergenic |
| TAATTTATCCATGCATCGCA+CGG | 0.539154 | 2_1:+44307220 | None:intergenic |
| ACTAGTGGTAGGTGAATTTG+GGG | 0.540705 | 2_1:+44308464 | None:intergenic |
| TCAAGGATTGAATCTCCAAA+GGG | 0.541373 | 2_1:+44307735 | None:intergenic |
| AGAAAATTGTTGGGAACTAG+TGG | 0.549969 | 2_1:+44308449 | None:intergenic |
| GTATCTACCCGTGCGATGCA+TGG | 0.551129 | 2_1:-44307228 | Msa0208560:three_prime_UTR |
| ACGTATCATCAAGCAGCAGC+TGG | 0.560203 | 2_1:-44310038 | Msa0208560:CDS |
| TAATGGTGAGGATCATATCA+TGG | 0.568755 | 2_1:-44308310 | Msa0208560:CDS |
| ATCAAGGATTGAATCTCCAA+AGG | 0.576697 | 2_1:+44307734 | None:intergenic |
| AATTTATCCATGCATCGCAC+GGG | 0.600301 | 2_1:+44307221 | None:intergenic |
| AACAACAACGTTTAACTTCG+GGG | 0.603388 | 2_1:-44308668 | Msa0208560:CDS |
| ATTGCGCTCATCAAATGATG+AGG | 0.605739 | 2_1:+44307914 | None:intergenic |
| AATTGTTGGGAACTAGTGGT+AGG | 0.606056 | 2_1:+44308453 | None:intergenic |
| GTCTCGTGCTAATAATGGTG+AGG | 0.616632 | 2_1:-44308322 | Msa0208560:CDS |
| GAATTTCCTTGATACTGGTG+TGG | 0.624759 | 2_1:-44308739 | Msa0208560:CDS |
| AGGAATCATCATCGCTGCAG+AGG | 0.642820 | 2_1:+44307934 | None:intergenic |
| GATCCAATGTAAGGAACACA+AGG | 0.646884 | 2_1:-44307826 | Msa0208560:CDS |
| ACTTGTGAAGAACATACGCA+AGG | 0.658289 | 2_1:-44307448 | Msa0208560:CDS |
| TCATCATAATAACATGAACA+TGG | 0.660733 | 2_1:-44307408 | Msa0208560:exon |
| TAGTGGTAGGTGAATTTGGG+GGG | 0.663891 | 2_1:+44308466 | None:intergenic |
| TATATACTGAATTTAAAACA+AGG | 0.682236 | 2_1:+44310107 | None:intergenic |
| GTTGCTGAGAGTTGTGCAAG+TGG | 0.691092 | 2_1:+44308644 | None:intergenic |
| TGTTACTGTTGAGACTATGG+AGG | 0.705682 | 2_1:-44310082 | Msa0208560:exon |
| ATCCAATGTAAGGAACACAA+GGG | 0.769724 | 2_1:-44307825 | Msa0208560:CDS |
| CTAGTGGTAGGTGAATTTGG+GGG | 0.803417 | 2_1:+44308465 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAATAAAAAATGTGA+AGG | - | chr2_1:44307582-44307601 | Msa0208560:intron | 10.0% |
| !! | GTATTTATTCAATTTAAAAA+GGG | + | chr2_1:44307919-44307938 | None:intergenic | 10.0% |
| !! | TGTATTTATTCAATTTAAAA+AGG | + | chr2_1:44307920-44307939 | None:intergenic | 10.0% |
| !! | GTAATATGAAAAAAAAAAAT+AGG | + | chr2_1:44309110-44309129 | None:intergenic | 10.0% |
| !!! | AATCTTAATTATTTTATAGT+TGG | - | chr2_1:44309728-44309747 | Msa0208560:intron | 10.0% |
| !!! | ATCTTAATTATTTTATAGTT+GGG | - | chr2_1:44309729-44309748 | Msa0208560:intron | 10.0% |
| !!! | TATATACTGAATTTAAAACA+AGG | + | chr2_1:44307123-44307142 | None:intergenic | 15.0% |
| !!! | ATAGTTAGACTTTTTTAAAA+TGG | + | chr2_1:44307684-44307703 | None:intergenic | 15.0% |
| !! | ATAAATACAACAACAAAAAA+TGG | - | chr2_1:44307931-44307950 | Msa0208560:CDS | 15.0% |
| !! | ATTTAATATGTCATAAGAAA+TGG | - | chr2_1:44307983-44308002 | Msa0208560:CDS | 15.0% |
| !!! | AAATTAAAGTATTTTATTCC+AGG | - | chr2_1:44309620-44309639 | Msa0208560:intron | 15.0% |
| !! | AATATATCAAGCAAATATAT+TGG | + | chr2_1:44309652-44309671 | None:intergenic | 15.0% |
| !! | TAAGATAATACTATGTATAT+TGG | - | chr2_1:44309926-44309945 | Msa0208560:intron | 15.0% |
| !!! | TTTTTATCGTTTTTCTTTTT+TGG | - | chr2_1:44309968-44309987 | Msa0208560:intron | 15.0% |
| !!! | AACATGTAAAAACATTCTTT+TGG | + | chr2_1:44307809-44307828 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGAGTTTA+AGG | + | chr2_1:44308817-44308836 | None:intergenic | 20.0% |
| !!! | TTACTTATTGTACCTTTTTA+AGG | + | chr2_1:44309007-44309026 | None:intergenic | 20.0% |
| !! | TTGTGTAAAATTATGTTAGA+TGG | - | chr2_1:44309146-44309165 | Msa0208560:intron | 20.0% |
| !!! | TTTTGTTGCAATTTAAAGAT+AGG | + | chr2_1:44309563-44309582 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTCTTTGAATTT+TGG | - | chr2_1:44309673-44309692 | Msa0208560:intron | 20.0% |
| !! | AAGAATTTAAAAAGAAACAG+TGG | + | chr2_1:44309903-44309922 | None:intergenic | 20.0% |
| !!! | TATCTGATTTGGTAAGAAAA+TGG | - | chr2_1:44307213-44307232 | Msa0208560:three_prime_UTR | 25.0% |
| ! | ACTTAGGGATATTATGTATT+AGG | + | chr2_1:44307397-44307416 | None:intergenic | 25.0% |
| ! | CAATTATTAAGAATATCGAC+AGG | - | chr2_1:44307457-44307476 | Msa0208560:CDS | 25.0% |
| !!! | GTTTTCTTCTGTACTTTTTA+CGG | - | chr2_1:44307536-44307555 | Msa0208560:intron | 25.0% |
| !!! | ACGGTAAACAATTCATTTTT+CGG | - | chr2_1:44307555-44307574 | Msa0208560:intron | 25.0% |
| !!! | TTAATTTGTTGACCTATTAC+CGG | - | chr2_1:44307656-44307675 | Msa0208560:intron | 25.0% |
| !!! | AGACTTTTTTAAAATGGATC+CGG | + | chr2_1:44307678-44307697 | None:intergenic | 25.0% |
| ! | ATTTGTCCATGACAATATTT+GGG | + | chr2_1:44307758-44307777 | None:intergenic | 25.0% |
| ! | AATTTGTCCATGACAATATT+TGG | + | chr2_1:44307759-44307778 | None:intergenic | 25.0% |
| !!! | TCTATACTGTTTTAGAGATA+GGG | + | chr2_1:44308012-44308031 | None:intergenic | 25.0% |
| !!! | ATCTATACTGTTTTAGAGAT+AGG | + | chr2_1:44308013-44308032 | None:intergenic | 25.0% |
| ! | TTATTATTGAAGTGTGTTAG+AGG | - | chr2_1:44308124-44308143 | Msa0208560:intron | 25.0% |
| ! | TTATTTAAGAGATATTGCCA+GGG | + | chr2_1:44308167-44308186 | None:intergenic | 25.0% |
| !!! | TCTCACTAGTGTTTTTTTAT+AGG | + | chr2_1:44308258-44308277 | None:intergenic | 25.0% |
| ! | TGCACATGTTAATAAATTCA+AGG | + | chr2_1:44308316-44308335 | None:intergenic | 25.0% |
| ! | CGTAGTTAATCACAAATAAA+TGG | - | chr2_1:44308372-44308391 | Msa0208560:CDS | 25.0% |
| !!! | GTTGTTGTTTATTTTGTTCT+TGG | + | chr2_1:44308548-44308567 | None:intergenic | 25.0% |
| !! | TAAACAACAACGTTTAACTT+CGG | - | chr2_1:44308557-44308576 | Msa0208560:CDS | 25.0% |
| ! | ATTTAGTGATGAAACAAAGT+TGG | - | chr2_1:44308608-44308627 | Msa0208560:CDS | 25.0% |
| ! | CGATATTGATAAGACAATTA+TGG | - | chr2_1:44308644-44308663 | Msa0208560:CDS | 25.0% |
| !! | TGAAGAAAGTTTTTGTGTAA+AGG | + | chr2_1:44308709-44308728 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAGTTTAAGGT+GGG | + | chr2_1:44308813-44308832 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGAGTTTAAGG+TGG | + | chr2_1:44308814-44308833 | None:intergenic | 25.0% |
| !!! | TTCTTATTTTCCAATTCAGT+TGG | + | chr2_1:44308855-44308874 | None:intergenic | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+GGG | + | chr2_1:44309002-44309021 | None:intergenic | 25.0% |
| !!! | TTATTGTACCTTTTTAAGGT+TGG | + | chr2_1:44309003-44309022 | None:intergenic | 25.0% |
| !!! | AAATCGAAGCAAAAGTATTA+GGG | - | chr2_1:44309361-44309380 | Msa0208560:intron | 25.0% |
| !! | TAGGGAAATATATGTTGATT+CGG | - | chr2_1:44309379-44309398 | Msa0208560:intron | 25.0% |
| !!! | GGGACTTTTAGTTAAAATTA+TGG | - | chr2_1:44309422-44309441 | Msa0208560:intron | 25.0% |
| ! | TTGCAATTTAAAGATAGGTA+GGG | + | chr2_1:44309558-44309577 | None:intergenic | 25.0% |
| !!! | TTTCACCACTTTTTAACTTT+TGG | - | chr2_1:44309589-44309608 | Msa0208560:intron | 25.0% |
| ! | TGATACCAAAAGTTAAAAAG+TGG | + | chr2_1:44309597-44309616 | None:intergenic | 25.0% |
| ! | CAAATATATTGGAAAAAACC+TGG | + | chr2_1:44309641-44309660 | None:intergenic | 25.0% |
| !!! | ATTATTTTATAGTTGGGTGA+AGG | - | chr2_1:44309735-44309754 | Msa0208560:intron | 25.0% |
| ! | TCATCATAATAACATGAACA+TGG | - | chr2_1:44309819-44309838 | Msa0208560:intron | 25.0% |
| ! | GATATCATTTATCGAAAATG+AGG | + | chr2_1:44309856-44309875 | None:intergenic | 25.0% |
| ! | TGCATGGATAAATTATGTTT+AGG | - | chr2_1:44310015-44310034 | Msa0208560:intron | 25.0% |
| ! | CTCAACTTGAAATATTTTGC+AGG | + | chr2_1:44307278-44307297 | None:intergenic | 30.0% |
| GTTATAAACGTACTACGAAA+TGG | + | chr2_1:44307325-44307344 | None:intergenic | 30.0% | |
| AATATGAGATGGTCAACTTA+GGG | + | chr2_1:44307412-44307431 | None:intergenic | 30.0% | |
| AAATATGAGATGGTCAACTT+AGG | + | chr2_1:44307413-44307432 | None:intergenic | 30.0% | |
| AAGTTGACCATCTCATATTT+AGG | - | chr2_1:44307413-44307432 | Msa0208560:exon | 30.0% | |
| ATGAGAACCTAAATATGAGA+TGG | + | chr2_1:44307423-44307442 | None:intergenic | 30.0% | |
| TGACATGTTAGTGTTATACT+TGG | + | chr2_1:44307627-44307646 | None:intergenic | 30.0% | |
| ! | TTTAAAATGGATCCGGTAAT+AGG | + | chr2_1:44307671-44307690 | None:intergenic | 30.0% |
| ! | TTTTTCCCCAAATATTGTCA+TGG | - | chr2_1:44307749-44307768 | Msa0208560:CDS | 30.0% |
| TTTGTCCATGACAATATTTG+GGG | + | chr2_1:44307757-44307776 | None:intergenic | 30.0% | |
| GTTATGCTTCTGTATATGAA+CGG | - | chr2_1:44307869-44307888 | Msa0208560:CDS | 30.0% | |
| AACCTAGCGAAAATTAAAGA+TGG | - | chr2_1:44307954-44307973 | Msa0208560:CDS | 30.0% | |
| !! | TTCCATCTTTAATTTTCGCT+AGG | + | chr2_1:44307959-44307978 | None:intergenic | 30.0% |
| AATGTATAAAAAAGTGACCC+TGG | - | chr2_1:44308147-44308166 | Msa0208560:intron | 30.0% | |
| GTTATTTAAGAGATATTGCC+AGG | + | chr2_1:44308168-44308187 | None:intergenic | 30.0% | |
| ! | CGAACACAATTTATTTGTTG+AGG | - | chr2_1:44308455-44308474 | Msa0208560:CDS | 30.0% |
| ! | AAACAACAACGTTTAACTTC+GGG | - | chr2_1:44308558-44308577 | Msa0208560:CDS | 30.0% |
| GTCAAATCCAGAAAATTGTT+GGG | + | chr2_1:44308790-44308809 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGAGTTTAAGGTG+GGG | + | chr2_1:44308812-44308831 | None:intergenic | 30.0% |
| CAAAAACCTCAAAAAGCAAA+AGG | - | chr2_1:44308883-44308902 | Msa0208560:intron | 30.0% | |
| AATAAAAACAGAGTCACATG+TGG | - | chr2_1:44309254-44309273 | Msa0208560:intron | 30.0% | |
| !! | CAAATCGAAGCAAAAGTATT+AGG | - | chr2_1:44309360-44309379 | Msa0208560:intron | 30.0% |
| GAGCAATGATAGTAATATCA+AGG | + | chr2_1:44309512-44309531 | None:intergenic | 30.0% | |
| TGATATTACTATCATTGCTC+AGG | - | chr2_1:44309512-44309531 | Msa0208560:intron | 30.0% | |
| GTTGCAATTTAAAGATAGGT+AGG | + | chr2_1:44309559-44309578 | None:intergenic | 30.0% | |
| ! | AAGTGTTACTGTTGAGACTA+TGG | - | chr2_1:44307142-44307161 | Msa0208560:three_prime_UTR | 35.0% |
| ! | GCAGGAAATTTCAAGTGTTA+AGG | + | chr2_1:44307260-44307279 | None:intergenic | 35.0% |
| GGGATATTATGTATTAGGAG+AGG | + | chr2_1:44307392-44307411 | None:intergenic | 35.0% | |
| !!! | TTAACAGTTCCTTTTTTCCC+AGG | - | chr2_1:44308425-44308444 | Msa0208560:CDS | 35.0% |
| AACCTGAATTTCCTTGATAC+TGG | - | chr2_1:44308483-44308502 | Msa0208560:CDS | 35.0% | |
| ! | AACAACAACGTTTAACTTCG+GGG | - | chr2_1:44308559-44308578 | Msa0208560:CDS | 35.0% |
| CAAAAGATGGGATTTGAACT+TGG | + | chr2_1:44308737-44308756 | None:intergenic | 35.0% | |
| AACTAGTGGTAGGTGAATTT+GGG | + | chr2_1:44308767-44308786 | None:intergenic | 35.0% | |
| AGAAAATTGTTGGGAACTAG+TGG | + | chr2_1:44308781-44308800 | None:intergenic | 35.0% | |
| ! | ACTAGTTCCCAACAATTTTC+TGG | - | chr2_1:44308780-44308799 | Msa0208560:CDS | 35.0% |
| GGTCAAATCCAGAAAATTGT+TGG | + | chr2_1:44308791-44308810 | None:intergenic | 35.0% | |
| AAAAGGTCTCGTGCTAATAA+TGG | - | chr2_1:44308900-44308919 | Msa0208560:intron | 35.0% | |
| TAATGGTGAGGATCATATCA+TGG | - | chr2_1:44308917-44308936 | Msa0208560:intron | 35.0% | |
| TCTTGTTCCCAACCTTAAAA+AGG | - | chr2_1:44308992-44309011 | Msa0208560:intron | 35.0% | |
| GAGCTAGTTAATAGCTATGA+GGG | + | chr2_1:44309040-44309059 | None:intergenic | 35.0% | |
| AGAGCTAGTTAATAGCTATG+AGG | + | chr2_1:44309041-44309060 | None:intergenic | 35.0% | |
| !! | GAAAGAGCTTAAAAAGCGTT+TGG | - | chr2_1:44309206-44309225 | Msa0208560:intron | 35.0% |
| ATCCAATGTAAGGAACACAA+GGG | - | chr2_1:44309402-44309421 | Msa0208560:intron | 35.0% | |
| ! | AATAGCAGTGTTTTACCCTT+TGG | - | chr2_1:44309477-44309496 | Msa0208560:intron | 35.0% |
| TCAAGGATTGAATCTCCAAA+GGG | + | chr2_1:44309495-44309514 | None:intergenic | 35.0% | |
| ATCAAGGATTGAATCTCCAA+AGG | + | chr2_1:44309496-44309515 | None:intergenic | 35.0% | |
| ! | AGTGGTTTGCATCTTCTTAT+AGG | + | chr2_1:44309885-44309904 | None:intergenic | 35.0% |
| TAATTTATCCATGCATCGCA+CGG | + | chr2_1:44310010-44310029 | None:intergenic | 35.0% | |
| TGTTACTGTTGAGACTATGG+AGG | - | chr2_1:44307145-44307164 | Msa0208560:three_prime_UTR | 40.0% | |
| ACTATTGACCAAGCCATTGA+TGG | - | chr2_1:44308034-44308053 | Msa0208560:CDS | 40.0% | |
| !!! | GTTCCTTTTTTCCCAGGAAA+TGG | - | chr2_1:44308431-44308450 | Msa0208560:CDS | 40.0% |
| ATTGTGTTCGTCCATTTCCT+GGG | + | chr2_1:44308445-44308464 | None:intergenic | 40.0% | |
| AATTGTGTTCGTCCATTTCC+TGG | + | chr2_1:44308446-44308465 | None:intergenic | 40.0% | |
| CACCAGTATCAAGGAAATTC+AGG | + | chr2_1:44308488-44308507 | None:intergenic | 40.0% | |
| GAATTTCCTTGATACTGGTG+TGG | - | chr2_1:44308488-44308507 | Msa0208560:CDS | 40.0% | |
| AATCTTCCACACCAGTATCA+AGG | + | chr2_1:44308497-44308516 | None:intergenic | 40.0% | |
| ACTAGTGGTAGGTGAATTTG+GGG | + | chr2_1:44308766-44308785 | None:intergenic | 40.0% | |
| GAACTAGTGGTAGGTGAATT+TGG | + | chr2_1:44308768-44308787 | None:intergenic | 40.0% | |
| AATTGTTGGGAACTAGTGGT+AGG | + | chr2_1:44308777-44308796 | None:intergenic | 40.0% | |
| TTCAGTGTCTCCAACTGAAT+TGG | - | chr2_1:44308842-44308861 | Msa0208560:intron | 40.0% | |
| !!! | ACGAGACCTTTTGCTTTTTG+AGG | + | chr2_1:44308892-44308911 | None:intergenic | 40.0% |
| TGCAAGAGCAATGAAGCTTT+GGG | + | chr2_1:44308970-44308989 | None:intergenic | 40.0% | |
| CATATTACACTGCTCACTGA+TGG | - | chr2_1:44309122-44309141 | Msa0208560:intron | 40.0% | |
| ! | GGACAAGTTTTCTGTACTAG+TGG | - | chr2_1:44309167-44309186 | Msa0208560:intron | 40.0% |
| ATTGCGCTCATCAAATGATG+AGG | + | chr2_1:44309316-44309335 | None:intergenic | 40.0% | |
| !! | GTTGATTCGGATCCAATGTA+AGG | - | chr2_1:44309392-44309411 | Msa0208560:intron | 40.0% |
| GATCCAATGTAAGGAACACA+AGG | - | chr2_1:44309401-44309420 | Msa0208560:intron | 40.0% | |
| ACTTGTGAAGAACATACGCA+AGG | - | chr2_1:44309779-44309798 | Msa0208560:intron | 40.0% | |
| AATTTATCCATGCATCGCAC+GGG | + | chr2_1:44310009-44310028 | None:intergenic | 40.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | - | chr2_1:44307202-44307221 | Msa0208560:three_prime_UTR | 45.0% | |
| !! | AGGAGAGGCATTTGTATGTG+AGG | + | chr2_1:44307377-44307396 | None:intergenic | 45.0% |
| ! | AAAGCTCTGGTGTCCATCAA+TGG | + | chr2_1:44308050-44308069 | None:intergenic | 45.0% |
| TCTGTCTCATCTCAAAGCTC+TGG | + | chr2_1:44308063-44308082 | None:intergenic | 45.0% | |
| CGTCCATTTCCTGGGAAAAA+AGG | + | chr2_1:44308437-44308456 | None:intergenic | 45.0% | |
| TAGTGGTAGGTGAATTTGGG+GGG | + | chr2_1:44308764-44308783 | None:intergenic | 45.0% | |
| CTAGTGGTAGGTGAATTTGG+GGG | + | chr2_1:44308765-44308784 | None:intergenic | 45.0% | |
| GTCTCGTGCTAATAATGGTG+AGG | - | chr2_1:44308905-44308924 | Msa0208560:intron | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | + | chr2_1:44308971-44308990 | None:intergenic | 45.0% | |
| !! | GAGCGCAATGAAAGTGTTGT+TGG | - | chr2_1:44309327-44309346 | Msa0208560:intron | 45.0% |
| GTCCCTTGTGTTCCTTACAT+TGG | + | chr2_1:44309407-44309426 | None:intergenic | 45.0% | |
| !!! | TATTATTTTAAAAAATGAAA+TGG | - | chr2_1:44310054-44310073 | Msa0208560:CDS | 5.0% |
| ACGTATCATCAAGCAGCAGC+TGG | - | chr2_1:44307189-44307208 | Msa0208560:three_prime_UTR | 50.0% | |
| TCTGGTGTCCATCAATGGCT+TGG | + | chr2_1:44308045-44308064 | None:intergenic | 50.0% | |
| GAGATGAGACAGATCGATCG+CGG | - | chr2_1:44308070-44308089 | Msa0208560:intron | 50.0% | |
| GTTGCTGAGAGTTGTGCAAG+TGG | + | chr2_1:44308586-44308605 | None:intergenic | 50.0% | |
| TTGGGGGGCTGTCAAAAGAT+GGG | + | chr2_1:44308749-44308768 | None:intergenic | 50.0% | |
| TTTGGGGGGCTGTCAAAAGA+TGG | + | chr2_1:44308750-44308769 | None:intergenic | 50.0% | |
| AGGAATCATCATCGCTGCAG+AGG | + | chr2_1:44309296-44309315 | None:intergenic | 50.0% | |
| ATCGCTGCAGAGGTCTGGTT+TGG | + | chr2_1:44309286-44309305 | None:intergenic | 55.0% | |
| TCATCATCGCTGCAGAGGTC+TGG | + | chr2_1:44309291-44309310 | None:intergenic | 55.0% | |
| GTATCTACCCGTGCGATGCA+TGG | - | chr2_1:44309999-44310018 | Msa0208560:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 44307098 | 44310151 | 44307098 | ID=Msa0208560;Name=Msa0208560 |
| chr2_1 | mRNA | 44307098 | 44310151 | 44307098 | ID=Msa0208560-mRNA-1;Parent=Msa0208560;Name=Msa0208560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=63|1|1|1|1|1|4|324|359 |
| chr2_1 | exon | 44307098 | 44307502 | 44307098 | ID=Msa0208560-mRNA-1:exon:12930;Parent=Msa0208560-mRNA-1 |
| chr2_1 | exon | 44307716 | 44308084 | 44307716 | ID=Msa0208560-mRNA-1:exon:12929;Parent=Msa0208560-mRNA-1 |
| chr2_1 | exon | 44308236 | 44308802 | 44308236 | ID=Msa0208560-mRNA-1:exon:12928;Parent=Msa0208560-mRNA-1 |
| chr2_1 | exon | 44310026 | 44310151 | 44310026 | ID=Msa0208560-mRNA-1:exon:12927;Parent=Msa0208560-mRNA-1 |
| chr2_1 | five_prime_UTR | 44310089 | 44310151 | 44310089 | ID=Msa0208560-mRNA-1:five_prime_utr;Parent=Msa0208560-mRNA-1 |
| chr2_1 | CDS | 44310026 | 44310088 | 44310026 | ID=Msa0208560-mRNA-1:cds;Parent=Msa0208560-mRNA-1 |
| chr2_1 | CDS | 44308236 | 44308802 | 44308236 | ID=Msa0208560-mRNA-1:cds;Parent=Msa0208560-mRNA-1 |
| chr2_1 | CDS | 44307716 | 44308084 | 44307716 | ID=Msa0208560-mRNA-1:cds;Parent=Msa0208560-mRNA-1 |
| chr2_1 | CDS | 44307422 | 44307502 | 44307422 | ID=Msa0208560-mRNA-1:cds;Parent=Msa0208560-mRNA-1 |
| chr2_1 | three_prime_UTR | 44307098 | 44307421 | 44307098 | ID=Msa0208560-mRNA-1:three_prime_utr;Parent=Msa0208560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
