AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0204000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204000 MtrunA17_Chr2g0302021 98.482 527 8 0 1 527 1 527 0.0 1085
Msa0204000 MtrunA17_Chr4g0069841 69.647 481 134 4 51 527 46 518 0.0 713
Msa0204000 MtrunA17_Chr4g0069861 62.971 478 173 2 51 527 45 519 0.0 651
Msa0204000 MtrunA17_Chr7g0272141 47.908 478 221 8 61 525 80 542 2.26e-158 462
Msa0204000 MtrunA17_Chr7g0233771 52.703 444 190 9 92 525 121 554 3.23e-156 457
Msa0204000 MtrunA17_Chr1g0147051 48.504 468 214 8 85 525 140 607 1.22e-153 452
Msa0204000 MtrunA17_Chr3g0126771 45.267 486 240 6 61 525 117 597 1.37e-150 444
Msa0204000 MtrunA17_Chr7g0233831 51.802 444 194 9 92 525 122 555 1.77e-150 442
Msa0204000 MtrunA17_Chr7g0269541 48.190 442 215 6 92 521 113 552 5.58e-150 441
Msa0204000 MtrunA17_Chr7g0233801 50.787 445 204 9 88 525 117 553 1.99e-149 439
Msa0204000 MtrunA17_Chr4g0011771 51.007 447 199 6 81 525 85 513 2.31e-149 437
Msa0204000 MtrunA17_Chr8g0345281 48.584 459 206 6 92 525 136 589 1.00e-141 421
Msa0204000 MtrunA17_Chr8g0391291 46.667 480 214 8 71 525 77 539 7.24e-141 417
Msa0204000 MtrunA17_Chr1g0192331 44.278 533 261 12 19 525 6 528 1.44e-140 416
Msa0204000 MtrunA17_Chr4g0011791 44.402 527 249 10 20 525 6 509 1.83e-140 415
Msa0204000 MtrunA17_Chr8g0391311 46.458 480 215 8 71 525 79 541 1.02e-139 414
Msa0204000 MtrunA17_Chr8g0354901 45.233 451 226 5 86 525 141 581 3.04e-137 409
Msa0204000 MtrunA17_Chr4g0069881 45.125 441 225 8 92 525 105 535 6.04e-135 402
Msa0204000 MtrunA17_Chr8g0354911 45.833 480 208 11 92 527 143 614 7.94e-133 399
Msa0204000 MtrunA17_Chr1g0175661 46.300 473 205 8 92 525 96 558 1.60e-132 396
Msa0204000 MtrunA17_Chr3g0080381 58.917 314 125 2 215 525 316 628 4.82e-132 397
Msa0204000 MtrunA17_Chr3g0079341 49.034 414 200 7 118 525 119 527 1.52e-131 392
Msa0204000 MtrunA17_Chr3g0079351 48.544 412 205 6 118 525 119 527 1.64e-131 392
Msa0204000 MtrunA17_Chr1g0195301 45.062 486 217 10 80 525 80 555 4.29e-130 390
Msa0204000 MtrunA17_Chr1g0195321 45.062 486 217 10 80 525 80 555 4.29e-130 390
Msa0204000 MtrunA17_Chr1g0195331 45.267 486 216 10 80 525 80 555 4.78e-130 390
Msa0204000 MtrunA17_Chr3g0079361 48.551 414 202 7 118 525 119 527 1.28e-129 388
Msa0204000 MtrunA17_Chr4g0011751 46.305 406 198 5 130 525 94 489 2.34e-129 385
Msa0204000 MtrunA17_Chr7g0269511 45.842 469 214 10 92 525 101 564 2.57e-128 385
Msa0204000 MtrunA17_Chr7g0269531 44.989 469 222 8 91 525 99 565 3.85e-128 385
Msa0204000 MtrunA17_Chr3g0080391 42.444 450 240 6 86 525 134 574 6.05e-128 385
Msa0204000 MtrunA17_Chr3g0090091 48.184 413 207 6 118 525 118 528 3.38e-127 381
Msa0204000 MtrunA17_Chr1g0195351 44.650 486 217 11 80 525 80 553 3.31e-125 377
Msa0204000 MtrunA17_Chr1g0194091 43.041 467 228 9 92 525 108 569 7.12e-125 377
Msa0204000 MtrunA17_Chr4g0018371 46.569 408 201 5 130 525 137 539 1.15e-122 370
Msa0204000 MtrunA17_Chr7g0269521 46.413 446 192 9 122 525 122 562 1.20e-122 371
Msa0204000 MtrunA17_Chr1g0194081 42.013 457 237 9 92 525 112 563 2.23e-120 365
Msa0204000 MtrunA17_Chr1g0192321 40.506 474 242 9 86 524 114 582 6.05e-119 362
Msa0204000 MtrunA17_Chr7g0272151 40.764 471 242 8 86 524 117 582 5.25e-116 355
Msa0204000 MtrunA17_Chr4g0069891 40.323 496 262 10 49 525 113 593 3.60e-115 353
Msa0204000 MtrunA17_Chr8g0345211 43.046 453 233 8 86 521 134 578 1.39e-114 351
Msa0204000 MtrunA17_Chr1g0195311 58.647 266 108 2 260 525 51 314 4.30e-113 338
Msa0204000 MtrunA17_Chr7g0270691 35.560 509 299 9 36 525 51 549 4.81e-112 343
Msa0204000 MtrunA17_Chr1g0192311 39.693 456 248 8 86 521 118 566 1.15e-111 343
Msa0204000 MtrunA17_Chr1g0192281 39.693 456 248 8 86 521 118 566 1.15e-111 343
Msa0204000 MtrunA17_Chr4g0000121 38.987 454 254 7 86 521 105 553 3.19e-110 339
Msa0204000 MtrunA17_Chr1g0192301 38.767 454 255 7 86 521 123 571 1.00e-108 336
Msa0204000 MtrunA17_Chr7g0270661 39.535 473 237 11 92 527 108 568 2.99e-105 327
Msa0204000 MtrunA17_Chr7g0270671 39.535 473 237 11 92 527 108 568 2.99e-105 327
Msa0204000 MtrunA17_Chr2g0295531 35.758 495 296 8 38 522 61 543 5.08e-105 327
Msa0204000 MtrunA17_Chr7g0270651 38.819 474 239 11 92 527 108 568 2.76e-102 319
Msa0204000 MtrunA17_Chr2g0302001 52.239 268 124 2 258 525 174 437 5.28e-102 313
Msa0204000 MtrunA17_Chr2g0301931 53.521 284 127 4 242 525 14 292 1.10e-99 303
Msa0204000 MtrunA17_Chr4g0067611 36.449 428 242 7 122 524 149 571 3.62e-95 300
Msa0204000 MtrunA17_Chr4g0067601 37.170 417 238 6 130 524 157 571 5.68e-95 300
Msa0204000 MtrunA17_Chr7g0270631 39.238 446 231 8 92 503 96 535 5.78e-95 312
Msa0204000 MtrunA17_Chr7g0270631 36.117 479 257 11 92 527 644 1116 1.50e-84 283
Msa0204000 MtrunA17_Chr8g0384121 37.607 468 233 12 92 524 120 563 4.21e-94 298
Msa0204000 MtrunA17_Chr2g0295551 35.332 467 259 7 86 524 112 563 6.64e-94 297
Msa0204000 MtrunA17_Chr8g0380581 43.323 337 179 6 192 522 43 373 3.06e-90 281
Msa0204000 MtrunA17_Chr7g0234711 57.576 231 97 1 296 525 39 269 8.08e-90 276
Msa0204000 MtrunA17_Chr3g0129921 38.462 429 220 12 130 524 145 563 7.66e-88 281
Msa0204000 MtrunA17_Chr5g0437831 39.669 363 208 7 171 525 24 383 3.61e-84 266
Msa0204000 MtrunA17_Chr2g0295541 32.394 497 264 7 86 524 112 594 5.17e-84 272
Msa0204000 MtrunA17_Chr2g0299431 54.918 244 104 4 182 423 22 261 4.70e-76 241
Msa0204000 MtrunA17_Chr2g0334111 34.985 323 195 5 204 525 15 323 1.89e-69 225
Msa0204000 MtrunA17_Chr7g0268241 37.821 312 182 4 215 525 50 350 1.22e-68 224
Msa0204000 MtrunA17_Chr7g0271381 34.305 446 264 11 95 525 125 556 7.93e-68 228
Msa0204000 MtrunA17_Chr7g0258341 38.782 312 169 5 215 516 90 389 4.73e-61 206
Msa0204000 MtrunA17_Chr1g0194311 34.365 323 187 7 202 514 61 368 2.70e-52 182
Msa0204000 MtrunA17_Chr6g0453551 33.115 305 180 5 215 509 6 296 6.91e-52 179
Msa0204000 MtrunA17_Chr6g0466951 34.740 308 174 6 185 487 43 328 1.32e-50 177
Msa0204000 MtrunA17_Chr6g0466961 35.612 278 156 4 215 487 40 299 9.88e-50 174
Msa0204000 MtrunA17_Chr6g0487101 33.333 327 189 8 199 514 72 380 3.23e-49 174
Msa0204000 MtrunA17_Chr7g0265201 34.675 323 183 7 199 514 84 385 9.64e-49 173
Msa0204000 MtrunA17_Chr8g0389771 31.909 351 197 9 188 514 45 377 1.18e-48 172
Msa0204000 MtrunA17_Chr5g0446301 35.294 306 171 6 221 514 67 357 7.02e-47 167
Msa0204000 MtrunA17_Chr8g0391261 51.079 139 68 0 387 525 28 166 1.55e-46 160
Msa0204000 MtrunA17_Chr7g0217941 31.683 303 183 4 217 509 8 296 4.73e-46 163
Msa0204000 MtrunA17_Chr2g0294321 32.710 321 195 6 201 515 42 347 2.37e-45 162
Msa0204000 MtrunA17_Chr1g0161731 34.191 272 159 4 223 487 57 315 6.11e-45 161
Msa0204000 MtrunA17_Chr8g0351871 32.808 317 178 8 215 517 33 328 5.62e-42 153
Msa0204000 MtrunA17_Chr4g0070051 32.399 321 184 11 206 514 44 343 3.44e-40 149
Msa0204000 MtrunA17_Chr5g0399221 29.560 318 197 6 212 517 60 362 5.91e-39 145
Msa0204000 MtrunA17_Chr2g0295851 30.745 322 191 9 201 515 41 337 3.00e-36 137
Msa0204000 MtrunA17_Chr5g0440871 29.967 307 195 5 208 514 32 318 2.17e-34 132
Msa0204000 MtrunA17_Chr4g0037751 28.367 349 218 9 183 514 28 361 4.49e-34 132
Msa0204000 MtrunA17_Chr5g0420831 28.086 324 204 7 170 476 15 326 4.79e-31 124
Msa0204000 MtrunA17_Chr7g0234731 37.778 180 106 5 118 294 138 314 6.86e-30 119
Msa0204000 MtrunA17_Chr8g0391281 35.060 251 121 8 71 296 77 310 1.76e-29 118
Msa0204000 MtrunA17_Chr6g0459781 35.519 183 106 3 204 376 2 182 1.85e-28 112
Msa0204000 MtrunA17_Chr5g0440901 38.562 153 84 3 307 459 1 143 5.00e-28 109
Msa0204000 MtrunA17_Chr5g0437821 38.519 135 82 1 328 461 4 138 1.92e-26 104
Msa0204000 MtrunA17_Chr4g0025841 29.365 252 161 3 208 459 30 264 3.37e-26 107
Msa0204000 MtrunA17_Chr2g0314691 33.000 200 115 5 318 514 18 201 1.36e-24 101
Msa0204000 MtrunA17_Chr7g0265161 33.333 174 83 4 289 457 14 159 8.32e-21 91.7
Msa0204000 MtrunA17_Chr6g0460141 37.857 140 79 4 243 374 5 144 9.03e-20 86.3
Msa0204000 MtrunA17_Chr5g0440891 30.058 173 114 2 208 380 41 206 8.41e-17 79.3
Msa0204000 MtrunA17_Chr6g0459791 35.385 130 61 5 391 514 4 116 3.03e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0204000 AT4G33220.1 63.550 524 161 5 25 525 7 523 0.0 707
Msa0204000 AT3G43270.1 62.209 516 178 5 26 525 11 525 0.0 679
Msa0204000 AT4G33220.2 66.418 402 113 1 146 525 1 402 0.0 582
Msa0204000 AT5G53370.1 49.670 455 207 8 88 525 136 585 1.01e-152 449
Msa0204000 AT5G53370.2 49.670 455 207 8 88 525 172 621 3.64e-152 449
Msa0204000 AT3G05620.1 48.132 455 210 6 87 526 99 542 2.98e-149 439
Msa0204000 AT3G49220.1 42.049 566 277 10 5 527 41 598 1.84e-144 429
Msa0204000 AT1G11580.1 50.569 439 197 6 94 521 124 553 4.59e-144 426
Msa0204000 AT3G49220.3 42.049 566 277 10 5 527 86 643 6.29e-144 429
Msa0204000 AT1G11580.2 50.569 439 197 6 94 521 145 574 9.28e-144 426
Msa0204000 AT1G53830.1 47.854 466 212 7 88 525 125 587 1.08e-137 411
Msa0204000 AT2G45220.1 45.418 502 241 14 35 525 32 511 1.64e-136 405
Msa0204000 AT3G14310.1 46.186 472 219 5 88 525 122 592 3.38e-136 407
Msa0204000 AT4G02320.1 45.395 456 213 7 92 525 77 518 9.66e-135 401
Msa0204000 AT2G26440.1 42.664 518 267 10 32 525 36 547 1.95e-133 399
Msa0204000 AT1G23200.1 43.478 506 223 8 59 525 73 554 7.08e-133 397
Msa0204000 AT4G02330.1 44.351 478 220 10 92 525 96 571 1.58e-130 392
Msa0204000 AT4G02300.1 43.459 451 227 6 92 525 93 532 5.01e-130 389
Msa0204000 AT2G26450.1 47.115 416 202 6 122 525 202 611 7.39e-129 389
Msa0204000 AT3G05610.1 40.937 491 266 5 48 525 86 565 4.55e-128 389
Msa0204000 AT3G10720.2 44.186 473 219 10 92 525 149 615 7.54e-128 387
Msa0204000 AT1G02810.1 58.413 315 125 4 215 525 265 577 7.99e-128 385
Msa0204000 AT5G51490.1 44.737 456 233 6 81 525 89 536 2.28e-127 382
Msa0204000 AT3G60730.1 45.154 423 205 5 130 525 97 519 2.53e-126 379
Msa0204000 AT5G04970.1 42.339 496 243 9 69 525 129 620 4.59e-126 382
Msa0204000 AT5G27870.1 40.041 492 267 8 48 525 85 562 5.77e-125 383
Msa0204000 AT5G51500.1 45.312 448 232 7 86 525 98 540 3.50e-124 374
Msa0204000 AT3G59010.1 45.695 453 204 9 91 525 100 528 2.10e-123 372
Msa0204000 AT2G43050.1 43.694 444 218 7 91 525 96 516 7.25e-123 370
Msa0204000 AT5G49180.1 46.247 413 200 7 129 521 156 566 2.39e-121 368
Msa0204000 AT1G53840.1 37.828 534 287 9 16 519 63 581 4.08e-121 368
Msa0204000 AT2G47550.1 44.325 467 220 8 92 525 99 558 9.56e-121 366
Msa0204000 AT3G10710.1 41.542 467 248 9 69 525 110 561 1.02e-120 366
Msa0204000 AT5G04960.1 40.078 514 270 10 31 523 66 562 4.56e-120 365
Msa0204000 AT3G47400.1 40.156 513 277 9 37 525 88 594 1.37e-119 364
Msa0204000 AT4G33230.1 40.984 488 258 10 56 525 131 606 2.02e-119 364
Msa0204000 AT3G14300.1 42.634 448 232 8 86 515 519 959 4.30e-114 360
Msa0204000 AT4G00190.1 39.837 492 256 10 36 525 21 474 4.91e-113 343
Msa0204000 AT3G10720.1 58.462 260 107 1 266 525 1 259 1.08e-112 335
Msa0204000 AT4G03930.1 44.169 403 213 5 130 525 127 524 3.27e-110 338
Msa0204000 AT3G27980.1 44.584 397 210 4 133 525 107 497 4.13e-109 334
Msa0204000 AT1G11590.1 44.913 403 210 5 130 525 127 524 8.69e-109 334
Msa0204000 AT5G20860.2 42.152 446 236 10 90 525 105 538 2.92e-108 333
Msa0204000 AT3G06830.1 41.805 421 213 8 130 523 151 566 1.03e-107 333
Msa0204000 AT4G15980.1 44.972 358 187 5 175 523 344 700 1.06e-102 324
Msa0204000 AT4G15980.2 44.972 358 187 5 175 523 354 710 2.10e-102 323
Msa0204000 AT1G11370.1 51.406 249 121 0 207 455 38 286 9.00e-88 272
Msa0204000 AT5G09760.1 43.925 321 155 7 209 513 235 546 5.73e-87 279
Msa0204000 AT5G09760.2 43.925 321 155 7 209 513 261 572 1.45e-86 278
Msa0204000 AT5G20860.1 38.283 431 216 9 90 510 105 495 4.34e-85 273
Msa0204000 AT5G64640.1 34.615 468 254 12 85 518 153 602 2.07e-83 271
Msa0204000 AT2G47030.1 41.499 347 186 4 194 525 244 588 3.41e-82 267
Msa0204000 AT2G47040.1 42.442 344 184 4 194 525 254 595 2.39e-81 265
Msa0204000 AT3G62170.1 39.155 355 191 4 194 525 236 588 1.25e-77 255
Msa0204000 AT1G05310.1 36.774 310 174 5 215 514 91 388 2.12e-57 196
Msa0204000 AT2G36710.1 35.577 312 182 5 215 519 91 390 5.43e-55 190
Msa0204000 AT2G36700.1 34.441 331 197 6 189 514 18 333 1.73e-49 174
Msa0204000 AT3G29090.1 33.115 305 180 5 215 509 7 297 3.93e-49 172
Msa0204000 AT5G19730.1 33.993 303 174 7 223 514 94 381 4.91e-49 174
Msa0204000 AT3G17060.1 31.707 328 195 7 199 516 30 338 3.34e-48 171
Msa0204000 AT1G44980.1 45.078 193 102 1 195 383 54 246 1.16e-46 163
Msa0204000 AT2G21610.1 33.113 302 180 7 215 514 51 332 6.96e-45 162
Msa0204000 AT2G21610.2 33.113 302 180 7 215 514 56 337 8.67e-45 162
Msa0204000 AT3G24130.1 34.507 284 162 5 215 487 34 304 4.47e-44 159
Msa0204000 AT5G18990.1 34.035 285 164 5 214 487 28 299 3.21e-42 154
Msa0204000 AT5G07430.1 29.973 367 220 10 168 514 6 355 2.18e-41 152
Msa0204000 AT5G55590.1 32.070 343 202 7 184 514 55 378 7.45e-41 151
Msa0204000 AT5G47500.1 30.556 324 197 7 203 514 50 357 1.07e-40 150
Msa0204000 AT5G55590.2 33.449 287 163 6 184 458 55 325 3.93e-40 148
Msa0204000 AT5G26810.1 31.481 324 188 8 208 514 27 333 3.43e-39 146
Msa0204000 AT5G61680.1 30.747 348 198 11 189 514 32 358 4.19e-39 146
Msa0204000 AT5G07420.1 30.094 319 200 7 202 514 54 355 4.19e-37 140
Msa0204000 AT1G69940.1 26.902 368 238 8 162 514 4 355 4.93e-37 140
Msa0204000 AT5G07410.1 26.902 368 238 8 162 514 4 355 3.40e-36 138
Msa0204000 AT2G19150.1 31.646 316 190 7 215 521 41 339 4.35e-36 137
Msa0204000 AT2G47280.1 30.818 318 191 8 208 514 28 327 4.66e-35 134
Msa0204000 AT3G49220.2 29.641 334 184 11 5 295 86 411 1.11e-31 127
Msa0204000 AT2G19150.2 32.677 254 148 6 215 459 41 280 6.87e-31 122

Find 131 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCCATTCTTTCTCAATT+TGG 0.219429 2_1:-28798627 Msa0204000:CDS
TATGCTGAGTACATGAATTA+TGG 0.221132 2_1:-28793353 Msa0204000:CDS
CAATTTGGTGGTGCTGGATT+TGG 0.235870 2_1:-28798612 Msa0204000:CDS
TGTGTGAAGGTATCTAAATT+AGG 0.258690 2_1:+28796557 None:intergenic
GAGAAACCAGTTGGTTCATT+AGG 0.283810 2_1:+28793563 None:intergenic
CTTTCTCAATTTGGTGGTGC+TGG 0.290029 2_1:-28798618 Msa0204000:CDS
GATTAAATAAACGAGTTAAA+TGG 0.296810 2_1:-28793319 Msa0204000:CDS
AATTTATTGAGGGGAATCTA+TGG 0.320153 2_1:-28793241 Msa0204000:CDS
GAACAAGAACATGCAAGATT+TGG 0.327961 2_1:+28793166 None:intergenic
ATATCGTTTCATGCTATAAT+CGG 0.339042 2_1:+28796388 None:intergenic
GGATCAGCGGCGACCCAAAT+AGG 0.347578 2_1:+28792917 None:intergenic
GATCCACCAAAAGGCCCTTT+TGG 0.358030 2_1:-28792899 Msa0204000:three_prime_UTR
AATTCCACTTATACATATCT+TGG 0.358083 2_1:-28793491 Msa0204000:CDS
CTGCAAGCATCGACATCATT+TGG 0.358983 2_1:+28796600 None:intergenic
TTCTAGTTGGTTGGTGGGAG+AGG 0.359448 2_1:-28793136 Msa0204000:three_prime_UTR
GTGTGAAGGTATCTAAATTA+GGG 0.360779 2_1:+28796558 None:intergenic
AACTGAATTTGAGTTTCTTA+AGG 0.368379 2_1:-28798709 Msa0204000:CDS
AAAAGGTCGATTTCCTTCTT+GGG 0.371455 2_1:-28796525 Msa0204000:CDS
AGAAACCAGTTGGTTCATTA+GGG 0.373597 2_1:+28793564 None:intergenic
TTCCACTCTAGCCACCCTTC+TGG 0.377303 2_1:+28793404 None:intergenic
TTGTTCTTGATTGTTCTAGT+TGG 0.384166 2_1:-28793149 Msa0204000:three_prime_UTR
TTTCCTCTGATGCACTTACT+TGG 0.384960 2_1:-28798539 Msa0204000:CDS
CAGCGGTAATATTGCAGAAC+TGG 0.386031 2_1:+28793537 None:intergenic
AGAAAACTCTTGCAAGCAAA+TGG 0.389703 2_1:-28796488 Msa0204000:CDS
TTGAAATCAAGAAGAAGAAA+TGG 0.391609 2_1:-28796328 Msa0204000:CDS
TTTGAGCCAAAAGGGCCTTT+TGG 0.392012 2_1:+28792893 None:intergenic
ATGAATGCCACAATTATTAC+TGG 0.395362 2_1:-28796281 Msa0204000:CDS
TGTGTGTGTGCAGCTGTTAG+TGG 0.406488 2_1:-28793884 Msa0204000:intron
GCTACTGCTTGGTGCTTCTC+AGG 0.409121 2_1:+28793815 None:intergenic
ATGCTGAGTACATGAATTAT+GGG 0.410016 2_1:-28793352 Msa0204000:CDS
TCCATTCTTTCTCAATTTGG+TGG 0.412634 2_1:-28798624 Msa0204000:CDS
GTAGCATTCACAGCTGGATT+AGG 0.413649 2_1:-28793203 Msa0204000:CDS
CTGCAATATTACCGCTGATT+CGG 0.414847 2_1:-28793531 Msa0204000:CDS
AATCCATCCATGCATGTCTC+TGG 0.419659 2_1:+28796671 None:intergenic
AAATTCAGTTGCTGCTTTAG+TGG 0.420241 2_1:+28798722 None:intergenic
TTGCTCCATCTGAATTTGTT+GGG 0.422448 2_1:-28798686 Msa0204000:CDS
AATCTATGGTTGCCCACAAC+AGG 0.423059 2_1:-28793227 Msa0204000:CDS
CCACAATTATTACTGGTAAT+CGG 0.426884 2_1:-28796274 Msa0204000:CDS
ATGAATTATGGGTCTGGAGC+TGG 0.430214 2_1:-28793341 Msa0204000:CDS
AATAAAGGCTTTGAGCCAAA+AGG 0.432990 2_1:+28792884 None:intergenic
CATGTTATGAGAGTGGGTAT+TGG 0.447234 2_1:+28798798 None:intergenic
ACGTTTAGATCAGCTACATT+TGG 0.451489 2_1:-28796230 Msa0204000:intron
TACAGTGACACAATTTATTG+AGG 0.451745 2_1:-28793252 Msa0204000:CDS
GTTGCTCCATCTGAATTTGT+TGG 0.452464 2_1:-28798687 Msa0204000:CDS
AGAAAAGAAAGAGAGATAGT+AGG 0.453421 2_1:+28798880 None:intergenic
TGATTCGGACCTTCATCCTT+CGG 0.457962 2_1:-28793516 Msa0204000:CDS
GAAAACTCTTGCAAGCAAAT+GGG 0.459250 2_1:-28796487 Msa0204000:CDS
ATAGTAGGTTCCACTACGTT+GGG 0.468451 2_1:+28798895 None:intergenic
GTAGGCAAGCATAATAGTAC+TGG 0.474561 2_1:-28796743 Msa0204000:intron
TCTTGATTGTTCTAGTTGGT+TGG 0.477318 2_1:-28793145 Msa0204000:three_prime_UTR
AATAAACGAGTTAAATGGCC+AGG 0.477703 2_1:-28793314 Msa0204000:CDS
TGGGAGAGGTAAATTAATGA+TGG 0.482835 2_1:-28793122 Msa0204000:three_prime_UTR
AATTCAGTTGCTGCTTTAGT+GGG 0.485440 2_1:+28798723 None:intergenic
TGTGCAGCTGTTAGTGGTAG+AGG 0.489543 2_1:-28793878 Msa0204000:intron
TTCAGAGAATGCAAAATAAG+TGG 0.490025 2_1:-28793701 Msa0204000:CDS
GAGAGTCAATTGGTATCTAC+TGG 0.490405 2_1:-28796629 Msa0204000:CDS
TTTGTTGAAGAAAGAGCCAT+TGG 0.496653 2_1:+28798846 None:intergenic
GATTGTTCTAGTTGGTTGGT+GGG 0.499410 2_1:-28793141 Msa0204000:three_prime_UTR
CTCTAGTGCTATTACCTTTG+GGG 0.502818 2_1:+28798496 None:intergenic
GTTCTTGAATATTGCTTCCA+CGG 0.504558 2_1:+28793464 None:intergenic
CTCTCTGTATTCTATCGATG+TGG 0.513472 2_1:-28793773 Msa0204000:CDS
TGGAATTAACCGAAGGATGA+AGG 0.514420 2_1:+28793507 None:intergenic
TGGGACAACAAGCTTGAAGT+AGG 0.516540 2_1:-28792995 Msa0204000:three_prime_UTR
ACATGCATGGATGGATTTGA+AGG 0.518569 2_1:-28796665 Msa0204000:CDS
ACCACCAAATTGAGAAAGAA+TGG 0.519567 2_1:+28798623 None:intergenic
GATGTTGTCGTTGCTACCGA+TGG 0.520194 2_1:-28796455 Msa0204000:CDS
ATAAAGGCTTTGAGCCAAAA+GGG 0.520456 2_1:+28792885 None:intergenic
GTCGTTGCTACCGATGGGAG+CGG 0.520579 2_1:-28796449 Msa0204000:CDS
GGTAAAATTCCCGCTCCCAT+CGG 0.525243 2_1:+28796439 None:intergenic
AAAGACCCTAATGAACCAAC+TGG 0.526693 2_1:-28793569 Msa0204000:CDS
TGATTGTTCTAGTTGGTTGG+TGG 0.527692 2_1:-28793142 Msa0204000:three_prime_UTR
GGCCAGAAGGGTGGCTAGAG+TGG 0.530386 2_1:-28793406 Msa0204000:CDS
ACAGTGACACAATTTATTGA+GGG 0.533042 2_1:-28793251 Msa0204000:CDS
TATCGTTTCATGCTATAATC+GGG 0.533377 2_1:+28796389 None:intergenic
GAGTACATGAATTATGGGTC+TGG 0.534865 2_1:-28793347 Msa0204000:CDS
AAGTGGTATTGAGAGTCAAT+TGG 0.537688 2_1:-28796639 Msa0204000:CDS
CGGATCTTAGTGCTACTGCT+TGG 0.538155 2_1:+28793804 None:intergenic
TGTGAATGCTACACCTGTTG+TGG 0.545876 2_1:+28793214 None:intergenic
GTCGCCGCTGATCCACCAAA+AGG 0.547760 2_1:-28792908 Msa0204000:three_prime_UTR
AATCCAGAGACATGCATGGA+TGG 0.553107 2_1:-28796674 Msa0204000:CDS
GGGGTTCTGAGCAGCAGAGG+CGG 0.558266 2_1:+28798515 None:intergenic
AACTGGATTGAGAAACCAGT+TGG 0.560013 2_1:+28793554 None:intergenic
TATGCGTGTATAAGCTGTCT+TGG 0.568487 2_1:+28793738 None:intergenic
CAGTGACACAATTTATTGAG+GGG 0.568743 2_1:-28793250 Msa0204000:CDS
TCTTCCAAGATATGTATAAG+TGG 0.576474 2_1:+28793487 None:intergenic
TCGTTGCTACCGATGGGAGC+GGG 0.578585 2_1:-28796448 Msa0204000:CDS
GGAGCACTAGCACATAGTGC+TGG 0.581300 2_1:+28798744 None:intergenic
TCTCTGTATTCTATCGATGT+GGG 0.581781 2_1:-28793772 Msa0204000:CDS
AAATGGAATCTCATGATGGT+CGG 0.582827 2_1:-28796311 Msa0204000:CDS
ATCGGAGCTTCATCGACGGT+TGG 0.586004 2_1:-28796256 Msa0204000:CDS
ATGTTGTCGTTGCTACCGAT+GGG 0.591046 2_1:-28796454 Msa0204000:CDS
AAAACTCTTGCAAGCAAATG+GGG 0.592783 2_1:-28796486 Msa0204000:CDS
CCGATTACCAGTAATAATTG+TGG 0.594114 2_1:+28796274 None:intergenic
GATAGTAGGTTCCACTACGT+TGG 0.594189 2_1:+28798894 None:intergenic
AATCTCATGATGGTCGGAGA+TGG 0.595084 2_1:-28796305 Msa0204000:CDS
GAAGGGTGGCTAGAGTGGAA+TGG 0.595880 2_1:-28793401 Msa0204000:CDS
AGGATGAAGGTCCGAATCAG+CGG 0.600661 2_1:+28793520 None:intergenic
GAAGAAATGGAATCTCATGA+TGG 0.602603 2_1:-28796315 Msa0204000:CDS
ACAGGTGTAGCATTCACAGC+TGG 0.604039 2_1:-28793209 Msa0204000:CDS
GGGACAGTGCAAGATGTAGT+TGG 0.605878 2_1:-28798666 Msa0204000:CDS
TTTGGGGTTCTGAGCAGCAG+AGG 0.607668 2_1:+28798512 None:intergenic
GAATGTGCATGTTATGAGAG+TGG 0.607767 2_1:+28798791 None:intergenic
AAGAACACTATCACAGCTCA+CGG 0.608273 2_1:-28793596 Msa0204000:CDS
TCATTCATTATGTGATACCC+TGG 0.610003 2_1:+28793296 None:intergenic
AGTGATGTGTTGAGGCCAGA+AGG 0.614258 2_1:-28793419 Msa0204000:CDS
GTGAATGCTACACCTGTTGT+GGG 0.614830 2_1:+28793215 None:intergenic
AATGTGCATGTTATGAGAGT+GGG 0.614889 2_1:+28798792 None:intergenic
ATAAACGAGTTAAATGGCCA+GGG 0.624075 2_1:-28793313 Msa0204000:CDS
GATGGATTTGAAGGTACAAG+TGG 0.628164 2_1:-28796656 Msa0204000:CDS
GGACCAAGTAAGTGCATCAG+AGG 0.628357 2_1:+28798536 None:intergenic
CTCACATAAGTGATGTGTTG+AGG 0.629032 2_1:-28793427 Msa0204000:CDS
GGGACAACAAGCTTGAAGTA+GGG 0.629536 2_1:-28792994 Msa0204000:three_prime_UTR
ATATTCAAAGCCCAACGTAG+TGG 0.631442 2_1:-28798905 None:intergenic
TGCAAATCCAGAGACATGCA+TGG 0.637742 2_1:-28796678 Msa0204000:CDS
GGGAGAGGTAAATTAATGAT+GGG 0.652801 2_1:-28793121 Msa0204000:three_prime_UTR
GTGATGTGTTGAGGCCAGAA+GGG 0.653931 2_1:-28793418 Msa0204000:CDS
AAATTAATGAAATTCAACAC+TGG 0.655708 2_1:+28793091 None:intergenic
ACTGTCCCAACAAATTCAGA+TGG 0.656011 2_1:+28798681 None:intergenic
GAATACAGAGAGGTCCGAGT+CGG 0.663579 2_1:+28793784 None:intergenic
GTATAAGTGGAATTAACCGA+AGG 0.664816 2_1:+28793500 None:intergenic
TCTGCTGCTCAGAACCCCAA+AGG 0.666029 2_1:-28798510 Msa0204000:intron
TATGTGATATACGTAAAGAG+AGG 0.672031 2_1:-28796368 Msa0204000:CDS
AGTAGCACTAAGATCCGACT+CGG 0.672727 2_1:-28793798 Msa0204000:CDS
TGAACTCTGATGTGAGAACA+TGG 0.674307 2_1:-28796715 Msa0204000:CDS
GGTAATCGGAGCTTCATCGA+CGG 0.685148 2_1:-28796260 Msa0204000:CDS
ATACATATCTTGGAAGACCG+TGG 0.699864 2_1:-28793481 Msa0204000:CDS
ATGCACCGCATCCATCACGT+TGG 0.716370 2_1:+28796418 None:intergenic
ATGTGTTGAGGCCAGAAGGG+TGG 0.717629 2_1:-28793415 Msa0204000:CDS
GCTTATACACGCATACAATG+CGG 0.734981 2_1:-28793730 Msa0204000:CDS
AAATGTAGCTGATCTAAACG+TGG 0.753803 2_1:+28796232 None:intergenic
CACATCGATAGAATACAGAG+AGG 0.773080 2_1:+28793774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATATAAATACTAG+AGG - chr2_1:28794223-28794242 Msa0204000:intron 10.0%
!!! AAATGATTTTTTTAACAAAA+TGG + chr2_1:28794429-28794448 None:intergenic 10.0%
!!! ATCATAAAAATCATTTTTTT+AGG + chr2_1:28794574-28794593 None:intergenic 10.0%
!!! GACAATTTTTTTTTTTTTTA+AGG - chr2_1:28794756-28794775 Msa0204000:intron 10.0%
!!! ACTTTTTTTAATGAAATTTT+GGG + chr2_1:28794826-28794845 None:intergenic 10.0%
!!! TACTTTTTTTAATGAAATTT+TGG + chr2_1:28794827-28794846 None:intergenic 10.0%
!!! TTTACTTCATAATTATTTTT+TGG - chr2_1:28796304-28796323 Msa0204000:CDS 10.0%
!! TATAAAAAAGTTTAATTCAA+AGG + chr2_1:28796457-28796476 None:intergenic 10.0%
!! ATAATTGTGAATTAAAATTT+GGG + chr2_1:28797219-28797238 None:intergenic 10.0%
!! AATAATTGTGAATTAAAATT+TGG + chr2_1:28797220-28797239 None:intergenic 10.0%
!! AAAAGTTAAAATTCTTATAT+TGG + chr2_1:28797320-28797339 None:intergenic 10.0%
!! AATAAGATAATAAATGATTA+AGG - chr2_1:28797431-28797450 Msa0204000:intron 10.0%
!! TTATAAAAAAAGATAGATAT+TGG - chr2_1:28797457-28797476 Msa0204000:intron 10.0%
!!! CTCTGTTTTTTTTTTTTTTT+TGG - chr2_1:28793861-28793880 Msa0204000:CDS 15.0%
!! CTAAAATAATGACAATTAAA+GGG + chr2_1:28793997-28794016 None:intergenic 15.0%
!!! TCTAAAATAATGACAATTAA+AGG + chr2_1:28793998-28794017 None:intergenic 15.0%
!!! ATCTTTATCTCTTTTTTTTT+GGG + chr2_1:28794199-28794218 None:intergenic 15.0%
!!! ATTTAGAACAAAATAGATTT+TGG + chr2_1:28794521-28794540 None:intergenic 15.0%
!!! TTTTTAGCACAAATTATATA+TGG - chr2_1:28795799-28795818 Msa0204000:intron 15.0%
!!! TCATAATTATTTTTTGGAAA+AGG - chr2_1:28796310-28796329 Msa0204000:CDS 15.0%
!!! TTCTTTTTATTAGTTTTGAT+AGG - chr2_1:28797359-28797378 Msa0204000:intron 15.0%
!!! AAATATGGACTTTAAAAAAT+GGG - chr2_1:28797397-28797416 Msa0204000:intron 15.0%
!!! AAATTTTGATTATTGTAATG+TGG - chr2_1:28798753-28798772 Msa0204000:CDS 15.0%
!!! AATTTTGATTATTGTAATGT+GGG - chr2_1:28798754-28798773 Msa0204000:CDS 15.0%
!!! TAATTAATTTGTTACCACTT+TGG - chr2_1:28793380-28793399 Msa0204000:CDS 20.0%
!!! AAAAGATATAAACTTTTGCA+TGG + chr2_1:28793454-28793473 None:intergenic 20.0%
!!! AGTGATGACTATTTTTTTAT+GGG + chr2_1:28793601-28793620 None:intergenic 20.0%
!!! AAGTGATGACTATTTTTTTA+TGG + chr2_1:28793602-28793621 None:intergenic 20.0%
!! ATGAGTGTACTATAAAAAAT+TGG + chr2_1:28793928-28793947 None:intergenic 20.0%
!!! CATCTTTATCTCTTTTTTTT+TGG + chr2_1:28794200-28794219 None:intergenic 20.0%
!!! TCTATTTTGTTCTAAATACA+AGG - chr2_1:28794524-28794543 Msa0204000:intron 20.0%
!!! ACCACAAAAAAAAAGATTTT+GGG + chr2_1:28794666-28794685 None:intergenic 20.0%
!! AACTGTTATGTTATAGTTAT+TGG + chr2_1:28794895-28794914 None:intergenic 20.0%
!!! TTTAGGTCATTTTTAAAGAA+TGG - chr2_1:28794964-28794983 Msa0204000:intron 20.0%
!!! CTTTTTTATTGTTCTTATGT+AGG - chr2_1:28795007-28795026 Msa0204000:intron 20.0%
!! CTAAAAAAATTTAACCTATG+GGG + chr2_1:28795786-28795805 None:intergenic 20.0%
!! GCTAAAAAAATTTAACCTAT+GGG + chr2_1:28795787-28795806 None:intergenic 20.0%
!! TGCTAAAAAAATTTAACCTA+TGG + chr2_1:28795788-28795807 None:intergenic 20.0%
!!! TGCTTAAAACATATTTTCTT+AGG - chr2_1:28796220-28796239 Msa0204000:intron 20.0%
!! AATGTTAAAAGGAAAATTCT+TGG + chr2_1:28796426-28796445 None:intergenic 20.0%
!!! AGAATTTTCCTTTTAACATT+AGG - chr2_1:28796426-28796445 Msa0204000:CDS 20.0%
!! ATAGTGCAAATATTCTAAAT+AGG + chr2_1:28796611-28796630 None:intergenic 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr2_1:28796773-28796792 Msa0204000:intron 20.0%
!! AGACAAATATTATGTTATGT+TGG + chr2_1:28796862-28796881 None:intergenic 20.0%
!! TCATGTTTACATTGTTTATT+TGG - chr2_1:28796991-28797010 Msa0204000:intron 20.0%
!!! CGCAAACTTATAAATTTTTT+AGG - chr2_1:28797036-28797055 Msa0204000:intron 20.0%
!!! TTAGGAAAATGTTATTTTTG+AGG - chr2_1:28797054-28797073 Msa0204000:intron 20.0%
!!! TTTTATTCACTTTTCTTGTT+TGG - chr2_1:28797276-28797295 Msa0204000:intron 20.0%
!! AGTTAAAATTCTTATATTGG+TGG + chr2_1:28797317-28797336 None:intergenic 20.0%
!!! TATTAGTTTTGATAGGTTTA+TGG - chr2_1:28797366-28797385 Msa0204000:intron 20.0%
!!! ATTAGTTTTGATAGGTTTAT+GGG - chr2_1:28797367-28797386 Msa0204000:intron 20.0%
!!! TTTTTAAAGTCCATATTTGA+TGG + chr2_1:28797395-28797414 None:intergenic 20.0%
!!! CAAATATGGACTTTAAAAAA+TGG - chr2_1:28797396-28797415 Msa0204000:intron 20.0%
!!! AAGTTAGTTTAAATTAGAAG+TGG + chr2_1:28797766-28797785 None:intergenic 20.0%
!!! ACATTTTACACATATATGTT+TGG + chr2_1:28797819-28797838 None:intergenic 20.0%
!! TGTCAAATACTAGTAAAAAA+AGG - chr2_1:28798136-28798155 Msa0204000:intron 20.0%
!! GTCAAATACTAGTAAAAAAA+GGG - chr2_1:28798137-28798156 Msa0204000:intron 20.0%
!! GATTAAATAAACGAGTTAAA+TGG - chr2_1:28798449-28798468 Msa0204000:intron 20.0%
!! AAATTAATGAAATTCAACAC+TGG + chr2_1:28798680-28798699 None:intergenic 20.0%
!!! ATTCATTATTTTCTCCTATT+TGG - chr2_1:28798837-28798856 Msa0204000:CDS 20.0%
!!! TTCATTATTTTCTCCTATTT+GGG - chr2_1:28798838-28798857 Msa0204000:CDS 20.0%
!! AACTGAATTTGAGTTTCTTA+AGG - chr2_1:28793059-28793078 Msa0204000:three_prime_UTR 25.0%
! ATGTATGAATAGAAAGTAAG+CGG + chr2_1:28793312-28793331 None:intergenic 25.0%
! GTCTTCGAGTATTAATTAAA+AGG - chr2_1:28793339-28793358 Msa0204000:CDS 25.0%
! TCTAACATGCATAAATGAAA+TGG - chr2_1:28793421-28793440 Msa0204000:CDS 25.0%
!! AAAGTTTATATCTTTTCCAC+AGG - chr2_1:28793458-28793477 Msa0204000:CDS 25.0%
! ATGATTTATTTATCTACCTG+TGG + chr2_1:28793477-28793496 None:intergenic 25.0%
! ATAGTTATTATGCTTGAGAT+TGG + chr2_1:28793656-28793675 None:intergenic 25.0%
! CTCAAGCATAATAACTATAT+TGG - chr2_1:28793658-28793677 Msa0204000:CDS 25.0%
!!! TTCATTTTTCATAAGCTAGA+GGG - chr2_1:28794301-28794320 Msa0204000:intron 25.0%
!!! ACCCAAAATCTTTTTTTTTG+TGG - chr2_1:28794662-28794681 Msa0204000:intron 25.0%
!! CACCACAAAAAAAAAGATTT+TGG + chr2_1:28794667-28794686 None:intergenic 25.0%
!!! AAATGCACCCAAATTTTTTA+AGG - chr2_1:28794786-28794805 Msa0204000:intron 25.0%
! GTTTCTGCCTTAAAAAATTT+GGG + chr2_1:28794796-28794815 None:intergenic 25.0%
!! TGTTTCTGCCTTAAAAAATT+TGG + chr2_1:28794797-28794816 None:intergenic 25.0%
! AAAAAAAAAAACGAAACGTC+AGG - chr2_1:28794849-28794868 Msa0204000:intron 25.0%
! AAAAAAAAAACGAAACGTCA+GGG - chr2_1:28794850-28794869 Msa0204000:intron 25.0%
!! TTTTTGTTCTTTTTGTGTGA+AGG + chr2_1:28795227-28795246 None:intergenic 25.0%
! TTCACACAAAAAGAACAAAA+AGG - chr2_1:28795226-28795245 Msa0204000:intron 25.0%
! ATATCGTTTCATGCTATAAT+CGG + chr2_1:28795383-28795402 None:intergenic 25.0%
! TTGAAATCAAGAAGAAGAAA+TGG - chr2_1:28795440-28795459 Msa0204000:intron 25.0%
!! CTTTTTCTTCAATTCACAAT+AGG - chr2_1:28795590-28795609 Msa0204000:intron 25.0%
!!! TTTTTTTGTGTGTTTCACAT+AGG + chr2_1:28795639-28795658 None:intergenic 25.0%
!!! TTGTGAAACATATTTTTGTG+AGG - chr2_1:28795660-28795679 Msa0204000:intron 25.0%
!!! TGTGAAACATATTTTTGTGA+GGG - chr2_1:28795661-28795680 Msa0204000:intron 25.0%
!! ATCATGAGTGTTAAGAATTT+TGG - chr2_1:28795842-28795861 Msa0204000:intron 25.0%
! TGAATAATACATGCAAGATT+CGG + chr2_1:28795888-28795907 None:intergenic 25.0%
! AGATAATATTAGGTGTGTAT+GGG - chr2_1:28796071-28796090 Msa0204000:intron 25.0%
! AAAAAAAGAGAGATGAGAAT+GGG + chr2_1:28796163-28796182 None:intergenic 25.0%
! AAAAAAAAGAGAGATGAGAA+TGG + chr2_1:28796164-28796183 None:intergenic 25.0%
!!! AATTATTTTTTGGAAAAGGC+AGG - chr2_1:28796314-28796333 Msa0204000:CDS 25.0%
! CTAAATAGGTCAAGTAATAT+GGG + chr2_1:28796597-28796616 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG + chr2_1:28796598-28796617 None:intergenic 25.0%
!! CAATGTAAACATGAGAATTT+TGG + chr2_1:28796985-28797004 None:intergenic 25.0%
! TGGTTAAAACTGAATTGTTA+AGG + chr2_1:28797746-28797765 None:intergenic 25.0%
! AATTCCACTTATACATATCT+TGG - chr2_1:28798277-28798296 Msa0204000:intron 25.0%
AGAAAAGAAAGAGAGATAGT+AGG + chr2_1:28792891-28792910 None:intergenic 30.0%
!! TTTCTCTACTTTTCTTCCAA+TGG - chr2_1:28792906-28792925 Msa0204000:three_prime_UTR 30.0%
ATGTCCATTCTTTCTCAATT+TGG - chr2_1:28793141-28793160 Msa0204000:three_prime_UTR 30.0%
!! TTACCCATTTTTATTACGAC+CGG - chr2_1:28793819-28793838 Msa0204000:CDS 30.0%
!! CTTTTCTTTTTTCGCTAAGT+TGG - chr2_1:28793900-28793919 Msa0204000:intron 30.0%
AATTAAAGGGAATCAAGAGT+AGG + chr2_1:28793984-28794003 None:intergenic 30.0%
!! GTTCATTTTTCATAAGCTAG+AGG - chr2_1:28794300-28794319 Msa0204000:intron 30.0%
GAAAAAAATCCCAAACAAAC+AGG + chr2_1:28794327-28794346 None:intergenic 30.0%
!!! ATCTTTTTTTTTGTGGTGTC+CGG - chr2_1:28794669-28794688 Msa0204000:intron 30.0%
TGCATAATATATGCAAGGTT+CGG + chr2_1:28794705-28794724 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr2_1:28794710-28794729 None:intergenic 30.0%
AAATTTGGGTGCATTTGTTT+CGG + chr2_1:28794782-28794801 None:intergenic 30.0%
!! GTGTGAAGGTATCTAAATTA+GGG + chr2_1:28795213-28795232 None:intergenic 30.0%
!! TGTGTGAAGGTATCTAAATT+AGG + chr2_1:28795214-28795233 None:intergenic 30.0%
TATCGTTTCATGCTATAATC+GGG + chr2_1:28795382-28795401 None:intergenic 30.0%
TATGTGATATACGTAAAGAG+AGG - chr2_1:28795400-28795419 Msa0204000:intron 30.0%
ATGAATGCCACAATTATTAC+TGG - chr2_1:28795487-28795506 Msa0204000:intron 30.0%
CCACAATTATTACTGGTAAT+CGG - chr2_1:28795494-28795513 Msa0204000:intron 30.0%
! ATGAGTGTTAAGAATTTTGG+TGG - chr2_1:28795845-28795864 Msa0204000:intron 30.0%
!! TTAAGAATTTTGGTGGTTTC+TGG - chr2_1:28795852-28795871 Msa0204000:intron 30.0%
!! TAAGAATTTTGGTGGTTTCT+GGG - chr2_1:28795853-28795872 Msa0204000:intron 30.0%
GAATAATACATGCAAGATTC+GGG + chr2_1:28795887-28795906 None:intergenic 30.0%
TTGATGAGCCAGATAATATT+AGG - chr2_1:28796061-28796080 Msa0204000:intron 30.0%
CATACACACCTAATATTATC+TGG + chr2_1:28796072-28796091 None:intergenic 30.0%
CAGATAATATTAGGTGTGTA+TGG - chr2_1:28796070-28796089 Msa0204000:intron 30.0%
ACAAATATTCATGTTCGACT+GGG - chr2_1:28796123-28796142 Msa0204000:intron 30.0%
TAAGCAAATAAACGAGAATC+AGG + chr2_1:28796206-28796225 None:intergenic 30.0%
AGGTTTGTCCTAATGTTAAA+AGG + chr2_1:28796437-28796456 None:intergenic 30.0%
AATACTCTCTAACTTATCCA+TGG - chr2_1:28796480-28796499 Msa0204000:CDS 30.0%
TTCAGCATATCAAATGCAAT+AGG - chr2_1:28796551-28796570 Msa0204000:CDS 30.0%
TCAACTAGGTCAAGTAATAT+GGG - chr2_1:28796810-28796829 Msa0204000:intron 30.0%
!! CCACATGCTCATTTAATTTT+TGG + chr2_1:28796900-28796919 None:intergenic 30.0%
CCAAAAATTAAATGAGCATG+TGG - chr2_1:28796897-28796916 Msa0204000:intron 30.0%
ATATATTTCAGCTGTTGAAG+AGG + chr2_1:28796960-28796979 None:intergenic 30.0%
TTTATGGGTTCCATCAAATA+TGG - chr2_1:28797382-28797401 Msa0204000:intron 30.0%
! ATATTGATGATAGCACAACA+AGG - chr2_1:28797512-28797531 Msa0204000:intron 30.0%
CTCATTAGCTATATGAAACT+TGG - chr2_1:28797629-28797648 Msa0204000:intron 30.0%
TTCAGAGAATGCAAAATAAG+TGG - chr2_1:28798067-28798086 Msa0204000:intron 30.0%
!! GTGATAGTGTTCTTTTGATT+TGG + chr2_1:28798166-28798185 None:intergenic 30.0%
TCTTCCAAGATATGTATAAG+TGG + chr2_1:28798284-28798303 None:intergenic 30.0%
TATGCTGAGTACATGAATTA+TGG - chr2_1:28798415-28798434 Msa0204000:intron 30.0%
ATGCTGAGTACATGAATTAT+GGG - chr2_1:28798416-28798435 Msa0204000:intron 30.0%
TACAGTGACACAATTTATTG+AGG - chr2_1:28798516-28798535 Msa0204000:CDS 30.0%
ACAGTGACACAATTTATTGA+GGG - chr2_1:28798517-28798536 Msa0204000:CDS 30.0%
AATTTATTGAGGGGAATCTA+TGG - chr2_1:28798527-28798546 Msa0204000:CDS 30.0%
TTGTTCTTGATTGTTCTAGT+TGG - chr2_1:28798619-28798638 Msa0204000:CDS 30.0%
TTTGTTGAAGAAAGAGCCAT+TGG + chr2_1:28792925-28792944 None:intergenic 35.0%
AATGTGCATGTTATGAGAGT+GGG + chr2_1:28792979-28792998 None:intergenic 35.0%
!! AATTCAGTTGCTGCTTTAGT+GGG + chr2_1:28793048-28793067 None:intergenic 35.0%
!! AAATTCAGTTGCTGCTTTAG+TGG + chr2_1:28793049-28793068 None:intergenic 35.0%
! TTGCTCCATCTGAATTTGTT+GGG - chr2_1:28793082-28793101 Msa0204000:three_prime_UTR 35.0%
TCCATTCTTTCTCAATTTGG+TGG - chr2_1:28793144-28793163 Msa0204000:three_prime_UTR 35.0%
ACCACCAAATTGAGAAAGAA+TGG + chr2_1:28793148-28793167 None:intergenic 35.0%
TTTACCTTACCTAAGTGATG+TGG - chr2_1:28793697-28793716 Msa0204000:CDS 35.0%
!! TACCCATTTTTATTACGACC+GGG - chr2_1:28793820-28793839 Msa0204000:CDS 35.0%
AACAGAGTTCTATGTAGTAG+CGG + chr2_1:28793848-28793867 None:intergenic 35.0%
!!! TCTTTTTTTTTGTGGTGTCC+GGG - chr2_1:28794670-28794689 Msa0204000:intron 35.0%
CATAATATATGCAAGGTTCG+GGG + chr2_1:28794703-28794722 None:intergenic 35.0%
GCATAATATATGCAAGGTTC+GGG + chr2_1:28794704-28794723 None:intergenic 35.0%
TGAAGTTTCAACTCGACTTT+AGG - chr2_1:28794947-28794966 Msa0204000:intron 35.0%
! AAGTGGTATTGAGAGTCAAT+TGG - chr2_1:28795129-28795148 Msa0204000:intron 35.0%
! AAAAAGGTCGATTTCCTTCT+TGG - chr2_1:28795242-28795261 Msa0204000:intron 35.0%
! AAAAGGTCGATTTCCTTCTT+GGG - chr2_1:28795243-28795262 Msa0204000:intron 35.0%
! TCATCTCTTTTAACCCAAGA+AGG + chr2_1:28795259-28795278 None:intergenic 35.0%
AGAAAACTCTTGCAAGCAAA+TGG - chr2_1:28795280-28795299 Msa0204000:intron 35.0%
GAAAACTCTTGCAAGCAAAT+GGG - chr2_1:28795281-28795300 Msa0204000:intron 35.0%
AAAACTCTTGCAAGCAAATG+GGG - chr2_1:28795282-28795301 Msa0204000:intron 35.0%
GAAGAAATGGAATCTCATGA+TGG - chr2_1:28795453-28795472 Msa0204000:intron 35.0%
AAATGGAATCTCATGATGGT+CGG - chr2_1:28795457-28795476 Msa0204000:intron 35.0%
CCGATTACCAGTAATAATTG+TGG + chr2_1:28795497-28795516 None:intergenic 35.0%
AAATGTAGCTGATCTAAACG+TGG + chr2_1:28795539-28795558 None:intergenic 35.0%
ACGTTTAGATCAGCTACATT+TGG - chr2_1:28795538-28795557 Msa0204000:intron 35.0%
TCGTCGCAAATTATTTACGA+GGG - chr2_1:28795718-28795737 Msa0204000:intron 35.0%
TATCCCCTACTAAATTTGCA+AGG - chr2_1:28795742-28795761 Msa0204000:intron 35.0%
ATCCCCTACTAAATTTGCAA+GGG - chr2_1:28795743-28795762 Msa0204000:intron 35.0%
!! AAGAATTTTGGTGGTTTCTG+GGG - chr2_1:28795854-28795873 Msa0204000:intron 35.0%
GACAAATATTCATGTTCGAC+TGG - chr2_1:28796122-28796141 Msa0204000:intron 35.0%
CAAATATTCATGTTCGACTG+GGG - chr2_1:28796124-28796143 Msa0204000:intron 35.0%
TTGTTTCATAAGACCGTAAG+TGG - chr2_1:28796251-28796270 Msa0204000:CDS 35.0%
TGTTTCATAAGACCGTAAGT+GGG - chr2_1:28796252-28796271 Msa0204000:CDS 35.0%
GAGACTCGAAATTAGATTCT+AGG - chr2_1:28796399-28796418 Msa0204000:CDS 35.0%
TCTCTAACTTATCCATGGAA+AGG - chr2_1:28796485-28796504 Msa0204000:CDS 35.0%
ATAGGTCAAGTAATATGGGA+CGG + chr2_1:28796593-28796612 None:intergenic 35.0%
GTCAACTAGGTCAAGTAATA+TGG - chr2_1:28796809-28796828 Msa0204000:intron 35.0%
!! GACGGAGGAAGTATTATTAA+AGG - chr2_1:28796832-28796851 Msa0204000:intron 35.0%
TCTCTGTATTCTATCGATGT+GGG - chr2_1:28797996-28798015 Msa0204000:intron 35.0%
! TTCTATCGATGTGGGATTTT+TGG - chr2_1:28798004-28798023 Msa0204000:intron 35.0%
!!! GGCACTGTCGATTTTATTTT+TGG - chr2_1:28798088-28798107 Msa0204000:intron 35.0%
!!! ACAGTTTTGAAAAAGAGTCG+TGG + chr2_1:28798119-28798138 None:intergenic 35.0%
! AGAAACCAGTTGGTTCATTA+GGG + chr2_1:28798207-28798226 None:intergenic 35.0%
GTATAAGTGGAATTAACCGA+AGG + chr2_1:28798271-28798290 None:intergenic 35.0%
GTTCTTGAATATTGCTTCCA+CGG + chr2_1:28798307-28798326 None:intergenic 35.0%
AATAAACGAGTTAAATGGCC+AGG - chr2_1:28798454-28798473 Msa0204000:intron 35.0%
ATAAACGAGTTAAATGGCCA+GGG - chr2_1:28798455-28798474 Msa0204000:intron 35.0%
TCATTCATTATGTGATACCC+TGG + chr2_1:28798475-28798494 None:intergenic 35.0%
CAGTGACACAATTTATTGAG+GGG - chr2_1:28798518-28798537 Msa0204000:CDS 35.0%
GAACAAGAACATGCAAGATT+TGG + chr2_1:28798605-28798624 None:intergenic 35.0%
! TCTTGATTGTTCTAGTTGGT+TGG - chr2_1:28798623-28798642 Msa0204000:CDS 35.0%
TGGGAGAGGTAAATTAATGA+TGG - chr2_1:28798646-28798665 Msa0204000:CDS 35.0%
GGGAGAGGTAAATTAATGAT+GGG - chr2_1:28798647-28798666 Msa0204000:CDS 35.0%
!! ATAAAGGCTTTGAGCCAAAA+GGG + chr2_1:28798886-28798905 None:intergenic 35.0%
!! AATAAAGGCTTTGAGCCAAA+AGG + chr2_1:28798887-28798906 None:intergenic 35.0%
ATAGTAGGTTCCACTACGTT+GGG + chr2_1:28792876-28792895 None:intergenic 40.0%
CATGTTATGAGAGTGGGTAT+TGG + chr2_1:28792973-28792992 None:intergenic 40.0%
GAATGTGCATGTTATGAGAG+TGG + chr2_1:28792980-28792999 None:intergenic 40.0%
GTTGCTCCATCTGAATTTGT+TGG - chr2_1:28793081-28793100 Msa0204000:three_prime_UTR 40.0%
ACTGTCCCAACAAATTCAGA+TGG + chr2_1:28793090-28793109 None:intergenic 40.0%
TTTCCTCTGATGCACTTACT+TGG - chr2_1:28793229-28793248 Msa0204000:CDS 40.0%
! CTCTAGTGCTATTACCTTTG+GGG + chr2_1:28793275-28793294 None:intergenic 40.0%
! CCTCTAGTGCTATTACCTTT+GGG + chr2_1:28793276-28793295 None:intergenic 40.0%
! ACCACTTTGGCTTATACTCA+AGG - chr2_1:28793393-28793412 Msa0204000:CDS 40.0%
ACCTTGAGTATAAGCCAAAG+TGG + chr2_1:28793397-28793416 None:intergenic 40.0%
GCTACCTTGTGACTATGATA+GGG - chr2_1:28793732-28793751 Msa0204000:CDS 40.0%
!! ACCCATTTTTATTACGACCG+GGG - chr2_1:28793821-28793840 Msa0204000:CDS 40.0%
TCCCCGGTCGTAATAAAAAT+GGG + chr2_1:28793825-28793844 None:intergenic 40.0%
!!! CTTTTTTTTTGTGGTGTCCG+GGG - chr2_1:28794671-28794690 Msa0204000:intron 40.0%
GTAGGCAAGCATAATAGTAC+TGG - chr2_1:28795025-28795044 Msa0204000:intron 40.0%
TGAACTCTGATGTGAGAACA+TGG - chr2_1:28795053-28795072 Msa0204000:intron 40.0%
! ACATGCATGGATGGATTTGA+AGG - chr2_1:28795103-28795122 Msa0204000:intron 40.0%
! GATGGATTTGAAGGTACAAG+TGG - chr2_1:28795112-28795131 Msa0204000:intron 40.0%
GAGAGTCAATTGGTATCTAC+TGG - chr2_1:28795139-28795158 Msa0204000:intron 40.0%
!!! TTTTACCAACGTGATGGATG+CGG - chr2_1:28795345-28795364 Msa0204000:intron 40.0%
AGCAAAATGGCACGCAAAAA+TGG - chr2_1:28795695-28795714 Msa0204000:intron 40.0%
GTCGTCGCAAATTATTTACG+AGG - chr2_1:28795717-28795736 Msa0204000:intron 40.0%
TCCCCTACTAAATTTGCAAG+GGG - chr2_1:28795744-28795763 Msa0204000:intron 40.0%
TCCCCTTGCAAATTTAGTAG+GGG + chr2_1:28795748-28795767 None:intergenic 40.0%
CTCCCCTTGCAAATTTAGTA+GGG + chr2_1:28795749-28795768 None:intergenic 40.0%
ACTCCCCTTGCAAATTTAGT+AGG + chr2_1:28795750-28795769 None:intergenic 40.0%
TAACCTATGGGGTTTCCAAA+GGG + chr2_1:28795775-28795794 None:intergenic 40.0%
TTAACCTATGGGGTTTCCAA+AGG + chr2_1:28795776-28795795 None:intergenic 40.0%
TTAGGTGTGTATGGGTTTGT+AGG - chr2_1:28796079-28796098 Msa0204000:intron 40.0%
TTGTCCCCTATTAGCTAGTT+GGG + chr2_1:28796107-28796126 None:intergenic 40.0%
TTTGTCCCCTATTAGCTAGT+TGG + chr2_1:28796108-28796127 None:intergenic 40.0%
GTTTCATAAGACCGTAAGTG+GGG - chr2_1:28796253-28796272 Msa0204000:CDS 40.0%
TCGAGTCTCGTTAGTATGTT+TGG + chr2_1:28796388-28796407 None:intergenic 40.0%
ACATTCAACGATCCTTTCCA+TGG + chr2_1:28796500-28796519 None:intergenic 40.0%
ATGTGCTTTATCCTCATCCA+TGG - chr2_1:28796516-28796535 Msa0204000:CDS 40.0%
CTTTATCCTCATCCATGGAA+AGG - chr2_1:28796521-28796540 Msa0204000:CDS 40.0%
CTGAAAAACGATCCTTTCCA+TGG + chr2_1:28796536-28796555 None:intergenic 40.0%
CTAGGTCAAGTAATATGGGA+CGG - chr2_1:28796814-28796833 Msa0204000:intron 40.0%
! ATCTCTTTTCAGAACACTGC+TGG - chr2_1:28797929-28797948 Msa0204000:intron 40.0%
CACATCGATAGAATACAGAG+AGG + chr2_1:28797997-28798016 None:intergenic 40.0%
CTCTCTGTATTCTATCGATG+TGG - chr2_1:28797995-28798014 Msa0204000:intron 40.0%
TATGCGTGTATAAGCTGTCT+TGG + chr2_1:28798033-28798052 None:intergenic 40.0%
GCTTATACACGCATACAATG+CGG - chr2_1:28798038-28798057 Msa0204000:intron 40.0%
AAGAACACTATCACAGCTCA+CGG - chr2_1:28798172-28798191 Msa0204000:intron 40.0%
AAAGACCCTAATGAACCAAC+TGG - chr2_1:28798199-28798218 Msa0204000:intron 40.0%
! GAGAAACCAGTTGGTTCATT+AGG + chr2_1:28798208-28798227 None:intergenic 40.0%
AACTGGATTGAGAAACCAGT+TGG + chr2_1:28798217-28798236 None:intergenic 40.0%
! CTGCAATATTACCGCTGATT+CGG - chr2_1:28798237-28798256 Msa0204000:intron 40.0%
TGGAATTAACCGAAGGATGA+AGG + chr2_1:28798264-28798283 None:intergenic 40.0%
ATACATATCTTGGAAGACCG+TGG - chr2_1:28798287-28798306 Msa0204000:intron 40.0%
CTCACATAAGTGATGTGTTG+AGG - chr2_1:28798341-28798360 Msa0204000:intron 40.0%
! GTGGAATGGAGATTTTGCTT+TGG - chr2_1:28798381-28798400 Msa0204000:intron 40.0%
GAGTACATGAATTATGGGTC+TGG - chr2_1:28798421-28798440 Msa0204000:intron 40.0%
! TGATTGTTCTAGTTGGTTGG+TGG - chr2_1:28798626-28798645 Msa0204000:CDS 40.0%
! GATTGTTCTAGTTGGTTGGT+GGG - chr2_1:28798627-28798646 Msa0204000:CDS 40.0%
GATAGTAGGTTCCACTACGT+TGG + chr2_1:28792877-28792896 None:intergenic 45.0%
!! CTTTCTCAATTTGGTGGTGC+TGG - chr2_1:28793150-28793169 Msa0204000:three_prime_UTR 45.0%
!! CAATTTGGTGGTGCTGGATT+TGG - chr2_1:28793156-28793175 Msa0204000:three_prime_UTR 45.0%
CCCAAAGGTAATAGCACTAG+AGG - chr2_1:28793273-28793292 Msa0204000:CDS 45.0%
! GCCTCTAGTGCTATTACCTT+TGG + chr2_1:28793277-28793296 None:intergenic 45.0%
CACACCACATCACTTAGGTA+AGG + chr2_1:28793704-28793723 None:intergenic 45.0%
ACTCACACACCACATCACTT+AGG + chr2_1:28793709-28793728 None:intergenic 45.0%
GGCTACCTTGTGACTATGAT+AGG - chr2_1:28793731-28793750 Msa0204000:CDS 45.0%
CTGTCCCTATCATAGTCACA+AGG + chr2_1:28793739-28793758 None:intergenic 45.0%
GTCCCCGGTCGTAATAAAAA+TGG + chr2_1:28793826-28793845 None:intergenic 45.0%
TGAGCTTAACTCACTTGGCA+AGG + chr2_1:28794732-28794751 None:intergenic 45.0%
TGCCAAGTGAGTTAAGCTCA+CGG - chr2_1:28794732-28794751 Msa0204000:intron 45.0%
TGCAAATCCAGAGACATGCA+TGG - chr2_1:28795090-28795109 Msa0204000:intron 45.0%
AATCCAGAGACATGCATGGA+TGG - chr2_1:28795094-28795113 Msa0204000:intron 45.0%
AATCCATCCATGCATGTCTC+TGG + chr2_1:28795100-28795119 None:intergenic 45.0%
!! CTGCAAGCATCGACATCATT+TGG + chr2_1:28795171-28795190 None:intergenic 45.0%
ATGTTGTCGTTGCTACCGAT+GGG - chr2_1:28795314-28795333 Msa0204000:intron 45.0%
! CGGGAATTTTACCAACGTGA+TGG - chr2_1:28795339-28795358 Msa0204000:intron 45.0%
AATCTCATGATGGTCGGAGA+TGG - chr2_1:28795463-28795482 Msa0204000:intron 45.0%
! TTTTTGTGAGGGACATTGCG+AGG - chr2_1:28795672-28795691 Msa0204000:intron 45.0%
AACCTATGGGGTTTCCAAAG+GGG + chr2_1:28795774-28795793 None:intergenic 45.0%
ACCAACTGAACTAAGCTCAC+AGG - chr2_1:28795916-28795935 Msa0204000:intron 45.0%
TCCTGTGAGCTTAGTTCAGT+TGG + chr2_1:28795920-28795939 None:intergenic 45.0%
TAGGCACCCAACTAGCTAAT+AGG - chr2_1:28796098-28796117 Msa0204000:intron 45.0%
AGGCACCCAACTAGCTAATA+GGG - chr2_1:28796099-28796118 Msa0204000:intron 45.0%
! ATTGTAGAGCACCCCACTTA+CGG + chr2_1:28796267-28796286 None:intergenic 45.0%
! TGGGGTGCTCTACAATTCAA+CGG - chr2_1:28796271-28796290 Msa0204000:CDS 45.0%
AACGATCCTTTCCATGGATG+AGG + chr2_1:28796530-28796549 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + chr2_1:28796818-28796837 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG - chr2_1:28796796-28796815 Msa0204000:intron 45.0%
AGTAGCACTAAGATCCGACT+CGG - chr2_1:28797970-28797989 Msa0204000:intron 45.0%
CAGCGGTAATATTGCAGAAC+TGG + chr2_1:28798234-28798253 None:intergenic 45.0%
! TGATTCGGACCTTCATCCTT+CGG - chr2_1:28798252-28798271 Msa0204000:intron 45.0%
! ATGAATTATGGGTCTGGAGC+TGG - chr2_1:28798427-28798446 Msa0204000:intron 45.0%
AATCTATGGTTGCCCACAAC+AGG - chr2_1:28798541-28798560 Msa0204000:CDS 45.0%
GTGAATGCTACACCTGTTGT+GGG + chr2_1:28798556-28798575 None:intergenic 45.0%
TGTGAATGCTACACCTGTTG+TGG + chr2_1:28798557-28798576 None:intergenic 45.0%
GTAGCATTCACAGCTGGATT+AGG - chr2_1:28798565-28798584 Msa0204000:CDS 45.0%
TGGGACAACAAGCTTGAAGT+AGG - chr2_1:28798773-28798792 Msa0204000:CDS 45.0%
GGGACAACAAGCTTGAAGTA+GGG - chr2_1:28798774-28798793 Msa0204000:CDS 45.0%
! TTTGAGCCAAAAGGGCCTTT+TGG + chr2_1:28798878-28798897 None:intergenic 45.0%
GGGACAGTGCAAGATGTAGT+TGG - chr2_1:28793102-28793121 Msa0204000:three_prime_UTR 50.0%
GGACCAAGTAAGTGCATCAG+AGG + chr2_1:28793235-28793254 None:intergenic 50.0%
AGTGATGTGGTGTGTGAGTG+AGG - chr2_1:28793710-28793729 Msa0204000:CDS 50.0%
TTCTATGTAGTAGCGGTCCC+CGG + chr2_1:28793841-28793860 None:intergenic 50.0%
AGCTAGAGGGCCTGTTTGTT+TGG - chr2_1:28794314-28794333 Msa0204000:intron 50.0%
GCTAGAGGGCCTGTTTGTTT+GGG - chr2_1:28794315-28794334 Msa0204000:intron 50.0%
GCCAAGTGAGTTAAGCTCAC+GGG - chr2_1:28794733-28794752 Msa0204000:intron 50.0%
CCAAGTGAGTTAAGCTCACG+GGG - chr2_1:28794734-28794753 Msa0204000:intron 50.0%
GATGTTGTCGTTGCTACCGA+TGG - chr2_1:28795313-28795332 Msa0204000:intron 50.0%
GGTAAAATTCCCGCTCCCAT+CGG + chr2_1:28795332-28795351 None:intergenic 50.0%
GGTAATCGGAGCTTCATCGA+CGG - chr2_1:28795508-28795527 Msa0204000:intron 50.0%
GGACATTGCGAGGAGCAAAA+TGG - chr2_1:28795682-28795701 Msa0204000:intron 50.0%
! TACCCCTTTGGAAACCCCAT+AGG - chr2_1:28795769-28795788 Msa0204000:intron 50.0%
GGCACCCAACTAGCTAATAG+GGG - chr2_1:28796100-28796119 Msa0204000:intron 50.0%
GATGAGAATGGGTAGCGTGA+CGG + chr2_1:28796152-28796171 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG + chr2_1:28796817-28796836 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr2_1:28796817-28796836 Msa0204000:intron 50.0%
TTGAAGAGGACAGCAGTCGT+AGG + chr2_1:28796946-28796965 None:intergenic 50.0%
TGTGTGTGTGCAGCTGTTAG+TGG - chr2_1:28797884-28797903 Msa0204000:intron 50.0%
TGTGCAGCTGTTAGTGGTAG+AGG - chr2_1:28797890-28797909 Msa0204000:intron 50.0%
! CGGATCTTAGTGCTACTGCT+TGG + chr2_1:28797967-28797986 None:intergenic 50.0%
GAATACAGAGAGGTCCGAGT+CGG + chr2_1:28797987-28798006 None:intergenic 50.0%
AGGATGAAGGTCCGAATCAG+CGG + chr2_1:28798251-28798270 None:intergenic 50.0%
AGTGATGTGTTGAGGCCAGA+AGG - chr2_1:28798349-28798368 Msa0204000:intron 50.0%
GTGATGTGTTGAGGCCAGAA+GGG - chr2_1:28798350-28798369 Msa0204000:intron 50.0%
ACAGGTGTAGCATTCACAGC+TGG - chr2_1:28798559-28798578 Msa0204000:CDS 50.0%
!! TTCTAGTTGGTTGGTGGGAG+AGG - chr2_1:28798632-28798651 Msa0204000:CDS 50.0%
! GATCCACCAAAAGGCCCTTT+TGG - chr2_1:28798869-28798888 Msa0204000:five_prime_UTR 50.0%
! GGAGCACTAGCACATAGTGC+TGG + chr2_1:28793027-28793046 None:intergenic 55.0%
!! TTTGGGGTTCTGAGCAGCAG+AGG + chr2_1:28793259-28793278 None:intergenic 55.0%
TCTGCTGCTCAGAACCCCAA+AGG - chr2_1:28793258-28793277 Msa0204000:CDS 55.0%
CCCCGTGAGCTTAACTCACT+TGG + chr2_1:28794737-28794756 None:intergenic 55.0%
ATGCACCGCATCCATCACGT+TGG + chr2_1:28795353-28795372 None:intergenic 55.0%
ATCGGAGCTTCATCGACGGT+TGG - chr2_1:28795512-28795531 Msa0204000:intron 55.0%
!! TTGCAAGGGGAGTACCCCTT+TGG - chr2_1:28795757-28795776 Msa0204000:intron 55.0%
!! TGGGACGGAGGGAGTACTAA+AGG + chr2_1:28796578-28796597 None:intergenic 55.0%
!! GCTACTGCTTGGTGCTTCTC+AGG + chr2_1:28797956-28797975 None:intergenic 55.0%
ATGTGTTGAGGCCAGAAGGG+TGG - chr2_1:28798353-28798372 Msa0204000:intron 55.0%
TTCCACTCTAGCCACCCTTC+TGG + chr2_1:28798367-28798386 None:intergenic 55.0%
GAAGGGTGGCTAGAGTGGAA+TGG - chr2_1:28798367-28798386 Msa0204000:intron 55.0%
!! AGGGCCTTTTGGTGGATCAG+CGG + chr2_1:28798867-28798886 None:intergenic 55.0%
! GAGCCAAAAGGGCCTTTTGG+TGG + chr2_1:28798875-28798894 None:intergenic 55.0%
GTCGTTGCTACCGATGGGAG+CGG - chr2_1:28795319-28795338 Msa0204000:intron 60.0%
TCGTTGCTACCGATGGGAGC+GGG - chr2_1:28795320-28795339 Msa0204000:intron 60.0%
GGATCAGCGGCGACCCAAAT+AGG + chr2_1:28798854-28798873 None:intergenic 60.0%
GTCGCCGCTGATCCACCAAA+AGG - chr2_1:28798860-28798879 Msa0204000:exon 60.0%
!! GGGGTTCTGAGCAGCAGAGG+CGG + chr2_1:28793256-28793275 None:intergenic 65.0%
AAGGTTCGGGGCTCGAACCC+CGG + chr2_1:28794691-28794710 None:intergenic 65.0%
GGCCAGAAGGGTGGCTAGAG+TGG - chr2_1:28798362-28798381 Msa0204000:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 28792872 28798918 28792872 ID=Msa0204000;Name=Msa0204000
chr2_1 mRNA 28792872 28798918 28792872 ID=Msa0204000-mRNA-1;Parent=Msa0204000;Name=Msa0204000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=53|1|1|1|1|1|3|324|527
chr2_1 exon 28792872 28793893 28792872 ID=Msa0204000-mRNA-1:exon:10376;Parent=Msa0204000-mRNA-1
chr2_1 exon 28796231 28796761 28796231 ID=Msa0204000-mRNA-1:exon:10375;Parent=Msa0204000-mRNA-1
chr2_1 exon 28798511 28798918 28798511 ID=Msa0204000-mRNA-1:exon:10374;Parent=Msa0204000-mRNA-1
chr2_1 five_prime_UTR 28798866 28798918 28798866 ID=Msa0204000-mRNA-1:five_prime_utr;Parent=Msa0204000-mRNA-1
chr2_1 CDS 28798511 28798865 28798511 ID=Msa0204000-mRNA-1:cds;Parent=Msa0204000-mRNA-1
chr2_1 CDS 28796231 28796761 28796231 ID=Msa0204000-mRNA-1:cds;Parent=Msa0204000-mRNA-1
chr2_1 CDS 28793196 28793893 28793196 ID=Msa0204000-mRNA-1:cds;Parent=Msa0204000-mRNA-1
chr2_1 three_prime_UTR 28792872 28793195 28792872 ID=Msa0204000-mRNA-1:three_prime_utr;Parent=Msa0204000-mRNA-1
Gene Sequence

>Msa0204000

ATGGCTCTTTCTTCAACAAAAGAGTTAGTACTATCTCGAACAAAACCAATACCCACTCTCATAACATGCACATTCATTTTAACATTATTGTTGTCTACTCCAGCACTATGTGCTAGTGCTCCCACTAAAGCAGCAACTGAATTTGAGTTTCTTAAGGTTGCTCCATCTGAATTTGTTGGGACAGTGCAAGATGTAGTTGGCATTTTGCAAGAAGTAATGTCCATTCTTTCTCAATTTGGTGGTGCTGGATTTGGAGATTCACGTCTCTCTAATGCTGTTTCTGATTGTATTGATATGCTTGATCTTTCCTCTGATGCACTTACTTGGTCCGCCTCTGCTGCTCAGAACCCCAAAGGCAAGCATAATAGTACTGGAAATGTGAACTCTGATGTGAGAACATGGTTAAGTTCTGCACTTGCAAATCCAGAGACATGCATGGATGGATTTGAAGGTACAAGTGGTATTGAGAGTCAATTGGTATCTACTGGTCTAAGCCAAATGATGTCGATGCTTGCAGAGCTTCTCACACAAGTAGACCCTAATTTAGATACCTTCACACAAAAAGAACAAAAAGGTCGATTTCCTTCTTGGGTTAAAAGAGATGATAGAAAACTCTTGCAAGCAAATGGGGTGAATGTTGATGTTGTCGTTGCTACCGATGGGAGCGGGAATTTTACCAACGTGATGGATGCGGTGCATGCAGCTCCCGATTATAGCATGAAACGATATGTGATATACGTAAAGAGAGGTGTTTATATTGAAAATGTTGAAATCAAGAAGAAGAAATGGAATCTCATGATGGTCGGAGATGGTATGAATGCCACAATTATTACTGGTAATCGGAGCTTCATCGACGGTTGGACCACGTTTAGATCAGCTACATTTGCTGTTAGTGGTAGAGGATTCATAGCACGAGACATCTCTTTTCAGAACACTGCTGGTCCTGAGAAGCACCAAGCAGTAGCACTAAGATCCGACTCGGACCTCTCTGTATTCTATCGATGTGGGATTTTTGGTTACCAAGACAGCTTATACACGCATACAATGCGGCAATTCTTCAGAGAATGCAAAATAAGTGGCACTGTCGATTTTATTTTTGGCGATGCCACGACTCTTTTTCAAAACTGTCAAATACTAGTAAAAAAAGGGTTACCAAATCAAAAGAACACTATCACAGCTCACGGACGAAAAGACCCTAATGAACCAACTGGTTTCTCAATCCAGTTCTGCAATATTACCGCTGATTCGGACCTTCATCCTTCGGTTAATTCCACTTATACATATCTTGGAAGACCGTGGAAGCAATATTCAAGAACAATTTTCATGCAATCTCACATAAGTGATGTGTTGAGGCCAGAAGGGTGGCTAGAGTGGAATGGAGATTTTGCTTTGGATACATTGTATTATGCTGAGTACATGAATTATGGGTCTGGAGCTGGATTAAATAAACGAGTTAAATGGCCAGGGTATCACATAATGAATGATTCTAGTCAAGCTAGTAACTTTACAGTGACACAATTTATTGAGGGGAATCTATGGTTGCCCACAACAGGTGTAGCATTCACAGCTGGATTAGGAGTTTAA
Protein sequence

>Msa0204000

MALSSTKELVLSRTKPIPTLITCTFILTLLLSTPALCASAPTKAATEFEFLKVAPSEFVGTVQDVVGILQEVMSILSQFGGAGFGDSRLSNAVSDCIDMLDLSSDALTWSASAAQNPKGKHNSTGNVNSDVRTWLSSALANPETCMDGFEGTSGIESQLVSTGLSQMMSMLAELLTQVDPNLDTFTQKEQKGRFPSWVKRDDRKLLQANGVNVDVVVATDGSGNFTNVMDAVHAAPDYSMKRYVIYVKRGVYIENVEIKKKKWNLMMVGDGMNATIITGNRSFIDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFFRECKISGTVDFIFGDATTLFQNCQILVKKGLPNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLHPSVNSTYTYLGRPWKQYSRTIFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGSGAGLNKRVKWPGYHIMNDSSQASNFTVTQFIEGNLWLPTTGVAFTAGLGV*