Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991400 | KEH20715.1 | 94.366 | 71 | 4 | 0 | 132 | 202 | 183 | 253 | 1.79e-33 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991400 | sp|Q8RXJ0|NUF2_ARATH | 50.704 | 71 | 35 | 0 | 132 | 202 | 178 | 248 | 8.01e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991400 | A0A072U4F7 | 94.366 | 71 | 4 | 0 | 132 | 202 | 183 | 253 | 8.54e-34 | 135 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa0991400 | 0.805702 | 1.175318e-49 | -8.615850e-47 |
| Msa0701900 | Msa0991400 | 0.801099 | 1.056245e-48 | -8.615850e-47 |
| Msa0790510 | Msa0991400 | 0.818374 | 2.026320e-52 | -8.615850e-47 |
| Msa0166870 | Msa0991400 | 0.805052 | 1.607835e-49 | -8.615850e-47 |
| Msa0178960 | Msa0991400 | 0.801287 | 9.666423e-49 | -8.615850e-47 |
| Msa0991400 | Msa1090260 | 0.821944 | 3.084046e-53 | -8.615850e-47 |
| Msa0991400 | Msa1116130 | -0.807934 | 3.965500e-50 | -8.615850e-47 |
| Msa0991400 | Msa1162550 | -0.815393 | 9.461055e-52 | -8.615850e-47 |
| Msa0991400 | Msa1207220 | 0.804750 | 1.859277e-49 | -8.615850e-47 |
| Msa0991400 | Msa1233890 | 0.806433 | 8.245379e-50 | -8.615850e-47 |
| Msa0991400 | Msa1283860 | 0.805207 | 1.492399e-49 | -8.615850e-47 |
| Msa0991400 | Msa1296280 | 0.805870 | 1.083535e-49 | -8.615850e-47 |
| Msa0991400 | Msa1392260 | 0.803186 | 3.931274e-49 | -8.615850e-47 |
| Msa0515010 | Msa0991400 | 0.805608 | 1.229731e-49 | -8.615850e-47 |
| Msa0847640 | Msa0991400 | 0.880206 | 6.641672e-70 | -8.615850e-47 |
| Msa0969520 | Msa0991400 | 0.801599 | 8.343835e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991400 | MtrunA17_Chr8g0380721 | 94.366 | 71 | 4 | 0 | 132 | 202 | 183 | 253 | 1.67e-37 | 135 |
| Msa0991400 | MtrunA17_Chr8g0380701 | 70.732 | 82 | 18 | 1 | 121 | 202 | 151 | 226 | 1.86e-30 | 112 |
| Msa0991400 | MtrunA17_Chr4g0025011 | 77.143 | 70 | 16 | 0 | 132 | 201 | 81 | 150 | 1.87e-30 | 109 |
| Msa0991400 | MtrunA17_Chr3g0135771 | 89.091 | 55 | 6 | 0 | 10 | 64 | 96 | 150 | 5.81e-29 | 106 |
| Msa0991400 | MtrunA17_Chr8g0362771 | 85.965 | 57 | 8 | 0 | 8 | 64 | 94 | 150 | 7.12e-26 | 104 |
| Msa0991400 | MtrunA17_Chr3g0135751 | 68.852 | 61 | 11 | 1 | 12 | 64 | 37 | 97 | 1.34e-19 | 80.5 |
| Msa0991400 | MtrunA17_Chr3g0135721 | 66.154 | 65 | 14 | 1 | 8 | 64 | 64 | 128 | 1.45e-18 | 83.2 |
| Msa0991400 | MtrunA17_Chr5g0432641 | 78.261 | 46 | 10 | 0 | 18 | 63 | 92 | 137 | 6.88e-17 | 78.2 |
| Msa0991400 | MtrunA17_Chr5g0432631 | 71.739 | 46 | 13 | 0 | 18 | 63 | 93 | 138 | 1.86e-15 | 74.3 |
| Msa0991400 | MtrunA17_Chr3g0135761 | 72.340 | 47 | 13 | 0 | 18 | 64 | 81 | 127 | 5.59e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991400 | AT1G61000.1 | 50.704 | 71 | 35 | 0 | 132 | 202 | 178 | 248 | 8.14e-18 | 81.3 |
| Msa0991400 | AT2G26140.1 | 65.957 | 47 | 16 | 0 | 18 | 64 | 84 | 130 | 1.47e-14 | 72.0 |
Find 33 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGATCAGAATTATTTAA+TGG | 0.247852 | 6_4:-55776509 | Msa0991400:CDS |
| ATGACATCTGTTTATTGTTC+AGG | 0.250147 | 6_4:+55775702 | None:intergenic |
| AATGCTTTAATCACGGATTC+AGG | 0.277298 | 6_4:+55777578 | None:intergenic |
| AAATTTATGCAAGGAATAAT+AGG | 0.285258 | 6_4:-55777638 | None:intergenic |
| AATGATACCTGTACTTTATC+AGG | 0.298393 | 6_4:+55775247 | None:intergenic |
| TCCTGGTGCTCAGTCCTTTG+AGG | 0.391398 | 6_4:-55776378 | Msa0991400:intron |
| GACTGTGGAAATGGATGATA+AGG | 0.411995 | 6_4:-55775648 | Msa0991400:intron |
| AAGCATTAGTAAAAGTTGAT+AGG | 0.414135 | 6_4:-55777502 | Msa0991400:CDS |
| TTCTAGCGCTGAATATAAAC+TGG | 0.418780 | 6_4:-55775320 | Msa0991400:CDS |
| AGGATCATAAGAGGCTTTCT+CGG | 0.436457 | 6_4:+55777598 | None:intergenic |
| ACCTCAAAGGACTGAGCACC+AGG | 0.439923 | 6_4:+55776377 | None:intergenic |
| GAAGGAGAGGACTGTGGAAA+TGG | 0.440042 | 6_4:-55775657 | Msa0991400:CDS |
| GGAGCGTTCGACGCGCTTCA+AGG | 0.449202 | 6_4:-55776417 | Msa0991400:CDS |
| AAGTACTATAAAGAAATTGA+AGG | 0.472617 | 6_4:-55775675 | Msa0991400:CDS |
| TAATCATCACCGTAGGAAAC+CGG | 0.483862 | 6_4:+55776189 | None:intergenic |
| CACGGATTCAGGATCATAAG+AGG | 0.485361 | 6_4:+55777589 | None:intergenic |
| TGCAGCTGGAGCTGATAGTC+CGG | 0.486818 | 6_4:-55776208 | Msa0991400:CDS |
| TTTGTTCTAGGAACGTGTTA+AGG | 0.492658 | 6_4:-55776438 | Msa0991400:intron |
| TTTCAAGGCAGAAGTGCAGC+TGG | 0.505124 | 6_4:-55776222 | Msa0991400:CDS |
| ATTAGTAAAAGTTGATAGGC+TGG | 0.515635 | 6_4:-55777498 | Msa0991400:CDS |
| GTACAAAATGTTCAAGAGCA+TGG | 0.533679 | 6_4:-55775298 | Msa0991400:CDS |
| ACTTTCAAATGCTTTAATCA+CGG | 0.539005 | 6_4:+55777571 | None:intergenic |
| ATTTGTTGGGTTCACCTCAA+AGG | 0.551215 | 6_4:+55776364 | None:intergenic |
| CTTACATTCAAATTTATGCA+AGG | 0.552178 | 6_4:-55777647 | None:intergenic |
| GAATCTTCACAGTTCACTCC+TGG | 0.554707 | 6_4:-55776395 | Msa0991400:CDS |
| GCTGATAGTCCGGTTTCCTA+CGG | 0.569969 | 6_4:-55776198 | Msa0991400:CDS |
| CTATAAAGAAATTGAAGGAG+AGG | 0.594531 | 6_4:-55775670 | Msa0991400:CDS |
| GAAATTGAAGGAGAGGACTG+TGG | 0.597307 | 6_4:-55775663 | Msa0991400:CDS |
| AAAGAATCTGTATGAAGAGA+TGG | 0.602453 | 6_4:+55777545 | None:intergenic |
| TCAATCGCCTGATAAAGTAC+AGG | 0.611191 | 6_4:-55775254 | None:intergenic |
| AGAGTTGCGTCAAACTATTG+CGG | 0.681856 | 6_4:-55775726 | Msa0991400:CDS |
| GGCATCTTAATCATCACCGT+AGG | 0.688833 | 6_4:+55776182 | None:intergenic |
| ACATCAAGCTCAAAACCCAG+AGG | 0.775025 | 6_4:-55776153 | Msa0991400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTGCTTAATTTATAATT+TGG | - | chr6_4:55775603-55775622 | Msa0991400:intron | 15.0% |
| !! | ACTTGCTTAATTTATAATTT+GGG | - | chr6_4:55775604-55775623 | Msa0991400:intron | 15.0% |
| !! | CACTAATAAATAACAAATTT+CGG | + | chr6_4:55776139-55776158 | None:intergenic | 15.0% |
| !!! | TTTGTTATTTATTAGTGATA+TGG | - | chr6_4:55776142-55776161 | Msa0991400:intron | 15.0% |
| !! | CTATATATGATTTAAATGAT+TGG | - | chr6_4:55776938-55776957 | Msa0991400:intron | 15.0% |
| !! | ATGTTTATGTGAATAATTAA+TGG | - | chr6_4:55777369-55777388 | Msa0991400:intron | 15.0% |
| !! | ATATATATTAATTCATGTGT+TGG | - | chr6_4:55777471-55777490 | Msa0991400:CDS | 15.0% |
| !!! | AACTTGCTTAATTTATAATT+TGG | - | chr6_4:55775603-55775622 | Msa0991400:intron | 15.0% |
| !! | ACTTGCTTAATTTATAATTT+GGG | - | chr6_4:55775604-55775623 | Msa0991400:intron | 15.0% |
| !! | CACTAATAAATAACAAATTT+CGG | + | chr6_4:55776139-55776158 | None:intergenic | 15.0% |
| !!! | TTTGTTATTTATTAGTGATA+TGG | - | chr6_4:55776142-55776161 | Msa0991400:intron | 15.0% |
| !! | CTATATATGATTTAAATGAT+TGG | - | chr6_4:55776938-55776957 | Msa0991400:intron | 15.0% |
| !! | ATGTTTATGTGAATAATTAA+TGG | - | chr6_4:55777369-55777388 | Msa0991400:intron | 15.0% |
| !! | ATATATATTAATTCATGTGT+TGG | - | chr6_4:55777471-55777490 | Msa0991400:CDS | 15.0% |
| !! | TAATTTGATTAGAAAGTTGA+AGG | - | chr6_4:55775548-55775567 | Msa0991400:intron | 20.0% |
| !! | CTTGCTTAATTTATAATTTG+GGG | - | chr6_4:55775605-55775624 | Msa0991400:intron | 20.0% |
| !! | TTGTGATCAGAATTATTTAA+TGG | - | chr6_4:55776378-55776397 | Msa0991400:intron | 20.0% |
| !! | AACGTATAATATCATTTGTT+GGG | + | chr6_4:55776539-55776558 | None:intergenic | 20.0% |
| !! | ATATTGTACAATTCTTGAAA+GGG | - | chr6_4:55777101-55777120 | Msa0991400:intron | 20.0% |
| !! | AAGTACTATAAAGAAATTGA+AGG | - | chr6_4:55777212-55777231 | Msa0991400:intron | 20.0% |
| !! | TTTATGTGAATAATTAATGG+TGG | - | chr6_4:55777372-55777391 | Msa0991400:intron | 20.0% |
| !! | TAATTTGATTAGAAAGTTGA+AGG | - | chr6_4:55775548-55775567 | Msa0991400:intron | 20.0% |
| !! | CTTGCTTAATTTATAATTTG+GGG | - | chr6_4:55775605-55775624 | Msa0991400:intron | 20.0% |
| !! | TTGTGATCAGAATTATTTAA+TGG | - | chr6_4:55776378-55776397 | Msa0991400:intron | 20.0% |
| !! | AACGTATAATATCATTTGTT+GGG | + | chr6_4:55776539-55776558 | None:intergenic | 20.0% |
| !! | ATATTGTACAATTCTTGAAA+GGG | - | chr6_4:55777101-55777120 | Msa0991400:intron | 20.0% |
| !! | AAGTACTATAAAGAAATTGA+AGG | - | chr6_4:55777212-55777231 | Msa0991400:intron | 20.0% |
| !! | TTTATGTGAATAATTAATGG+TGG | - | chr6_4:55777372-55777391 | Msa0991400:intron | 20.0% |
| ! | ACTTTCAAATGCTTTAATCA+CGG | + | chr6_4:55775319-55775338 | None:intergenic | 25.0% |
| !! | AAGCATTAGTAAAAGTTGAT+AGG | - | chr6_4:55775385-55775404 | Msa0991400:intron | 25.0% |
| ! | TTGACAATTATTGTTTGACT+AGG | - | chr6_4:55775498-55775517 | Msa0991400:intron | 25.0% |
| !!! | GTCATTTTAGCACAATTTTT+TGG | - | chr6_4:55775745-55775764 | Msa0991400:CDS | 25.0% |
| ! | TGTATGAAGTTTGATCATAA+TGG | - | chr6_4:55775816-55775835 | Msa0991400:intron | 25.0% |
| !!! | TTTGATCATAATGGTTTGTT+GGG | - | chr6_4:55775825-55775844 | Msa0991400:intron | 25.0% |
| !! | TTAATCATTTTGAACAAGAG+AGG | - | chr6_4:55775879-55775898 | Msa0991400:intron | 25.0% |
| ! | TTCATAAAACTTGCATTTCA+TGG | - | chr6_4:55776013-55776032 | Msa0991400:intron | 25.0% |
| ! | CATAGATCTATATAAGATCT+TGG | + | chr6_4:55776070-55776089 | None:intergenic | 25.0% |
| ! | GATCTTATATAGATCTATGT+TGG | - | chr6_4:55776071-55776090 | Msa0991400:intron | 25.0% |
| ! | AAAGAAAAGAAGATTGATGA+AGG | + | chr6_4:55776310-55776329 | None:intergenic | 25.0% |
| ! | CAACGTATAATATCATTTGT+TGG | + | chr6_4:55776540-55776559 | None:intergenic | 25.0% |
| ! | TTGAAAACTATGTAAAAAGC+AGG | - | chr6_4:55776577-55776596 | Msa0991400:intron | 25.0% |
| ! | TGAAAACTATGTAAAAAGCA+GGG | - | chr6_4:55776578-55776597 | Msa0991400:intron | 25.0% |
| ! | TTATCTCTTTATTCTGTACA+GGG | - | chr6_4:55776641-55776660 | Msa0991400:intron | 25.0% |
| ! | TAAATGATTGGAACAATGAT+TGG | - | chr6_4:55776950-55776969 | Msa0991400:intron | 25.0% |
| ! | TTGCCAACTAATAACAATAT+TGG | - | chr6_4:55776985-55777004 | Msa0991400:intron | 25.0% |
| !! | GATCCAATATTGTTATTAGT+TGG | + | chr6_4:55776991-55777010 | None:intergenic | 25.0% |
| ! | GATATTGTACAATTCTTGAA+AGG | - | chr6_4:55777100-55777119 | Msa0991400:intron | 25.0% |
| ! | TAATCTTTACTTCTTGATGT+TGG | - | chr6_4:55777304-55777323 | Msa0991400:intron | 25.0% |
| ! | AATCTTTACTTCTTGATGTT+GGG | - | chr6_4:55777305-55777324 | Msa0991400:intron | 25.0% |
| !!! | TTGGGATTTTTAGTAGTATA+TGG | - | chr6_4:55777323-55777342 | Msa0991400:intron | 25.0% |
| !!! | TGAATAATTAATGGTGGATT+AGG | - | chr6_4:55777378-55777397 | Msa0991400:intron | 25.0% |
| ! | ACTTTCAAATGCTTTAATCA+CGG | + | chr6_4:55775319-55775338 | None:intergenic | 25.0% |
| !! | AAGCATTAGTAAAAGTTGAT+AGG | - | chr6_4:55775385-55775404 | Msa0991400:intron | 25.0% |
| ! | TTGACAATTATTGTTTGACT+AGG | - | chr6_4:55775498-55775517 | Msa0991400:intron | 25.0% |
| !!! | GTCATTTTAGCACAATTTTT+TGG | - | chr6_4:55775745-55775764 | Msa0991400:CDS | 25.0% |
| ! | TGTATGAAGTTTGATCATAA+TGG | - | chr6_4:55775816-55775835 | Msa0991400:intron | 25.0% |
| !!! | TTTGATCATAATGGTTTGTT+GGG | - | chr6_4:55775825-55775844 | Msa0991400:intron | 25.0% |
| !! | TTAATCATTTTGAACAAGAG+AGG | - | chr6_4:55775879-55775898 | Msa0991400:intron | 25.0% |
| ! | TTCATAAAACTTGCATTTCA+TGG | - | chr6_4:55776013-55776032 | Msa0991400:intron | 25.0% |
| ! | CATAGATCTATATAAGATCT+TGG | + | chr6_4:55776070-55776089 | None:intergenic | 25.0% |
| ! | GATCTTATATAGATCTATGT+TGG | - | chr6_4:55776071-55776090 | Msa0991400:intron | 25.0% |
| ! | AAAGAAAAGAAGATTGATGA+AGG | + | chr6_4:55776310-55776329 | None:intergenic | 25.0% |
| ! | CAACGTATAATATCATTTGT+TGG | + | chr6_4:55776540-55776559 | None:intergenic | 25.0% |
| ! | TTGAAAACTATGTAAAAAGC+AGG | - | chr6_4:55776577-55776596 | Msa0991400:intron | 25.0% |
| ! | TGAAAACTATGTAAAAAGCA+GGG | - | chr6_4:55776578-55776597 | Msa0991400:intron | 25.0% |
| ! | TTATCTCTTTATTCTGTACA+GGG | - | chr6_4:55776641-55776660 | Msa0991400:intron | 25.0% |
| ! | TAAATGATTGGAACAATGAT+TGG | - | chr6_4:55776950-55776969 | Msa0991400:intron | 25.0% |
| ! | TTGCCAACTAATAACAATAT+TGG | - | chr6_4:55776985-55777004 | Msa0991400:intron | 25.0% |
| !! | GATCCAATATTGTTATTAGT+TGG | + | chr6_4:55776991-55777010 | None:intergenic | 25.0% |
| ! | GATATTGTACAATTCTTGAA+AGG | - | chr6_4:55777100-55777119 | Msa0991400:intron | 25.0% |
| ! | TAATCTTTACTTCTTGATGT+TGG | - | chr6_4:55777304-55777323 | Msa0991400:intron | 25.0% |
| ! | AATCTTTACTTCTTGATGTT+GGG | - | chr6_4:55777305-55777324 | Msa0991400:intron | 25.0% |
| !!! | TTGGGATTTTTAGTAGTATA+TGG | - | chr6_4:55777323-55777342 | Msa0991400:intron | 25.0% |
| !!! | TGAATAATTAATGGTGGATT+AGG | - | chr6_4:55777378-55777397 | Msa0991400:intron | 25.0% |
| AAAGAATCTGTATGAAGAGA+TGG | + | chr6_4:55775345-55775364 | None:intergenic | 30.0% | |
| !! | ATTAGTAAAAGTTGATAGGC+TGG | - | chr6_4:55775389-55775408 | Msa0991400:intron | 30.0% |
| !! | TTTCTGAAGACTTTTCTAAG+AGG | - | chr6_4:55775423-55775442 | Msa0991400:intron | 30.0% |
| !! | TTTTCTAAGAGGTGACTATT+TGG | - | chr6_4:55775434-55775453 | Msa0991400:intron | 30.0% |
| ! | GTTTGATCATAATGGTTTGT+TGG | - | chr6_4:55775824-55775843 | Msa0991400:intron | 30.0% |
| !! | TTGATCATAATGGTTTGTTG+GGG | - | chr6_4:55775826-55775845 | Msa0991400:intron | 30.0% |
| !! | CTCTTTTGACCTTTTGTTTA+GGG | - | chr6_4:55775973-55775992 | Msa0991400:intron | 30.0% |
| TAAAACTTGCATTTCATGGA+TGG | - | chr6_4:55776017-55776036 | Msa0991400:intron | 30.0% | |
| AAAACTTGCATTTCATGGAT+GGG | - | chr6_4:55776018-55776037 | Msa0991400:intron | 30.0% | |
| TCATGGATGGGATTAATAAA+CGG | - | chr6_4:55776030-55776049 | Msa0991400:intron | 30.0% | |
| AGTCTGCATAATTCAAAACT+TGG | - | chr6_4:55776094-55776113 | Msa0991400:intron | 30.0% | |
| ! | TCTTATCGCTGATTATAGTT+AGG | - | chr6_4:55776211-55776230 | Msa0991400:CDS | 30.0% |
| TGATTATAGTTAGGCTTTCT+GGG | - | chr6_4:55776220-55776239 | Msa0991400:CDS | 30.0% | |
| TATAGTGATTGTAGATGATC+TGG | - | chr6_4:55776257-55776276 | Msa0991400:intron | 30.0% | |
| ATAGTGATTGTAGATGATCT+GGG | - | chr6_4:55776258-55776277 | Msa0991400:intron | 30.0% | |
| TTGCAATATTTGCAACTACT+CGG | - | chr6_4:55776330-55776349 | Msa0991400:intron | 30.0% | |
| ACCTAAACAAAGAATCACAA+AGG | + | chr6_4:55776356-55776375 | None:intergenic | 30.0% | |
| !!! | TCGTTCTTCTTTTTTGTTCT+AGG | - | chr6_4:55776437-55776456 | Msa0991400:intron | 30.0% |
| ! | TATGTAAAAAGCAGGGTTTT+GGG | - | chr6_4:55776585-55776604 | Msa0991400:intron | 30.0% |
| AAGAGATAAGCTAAGAATGA+AGG | + | chr6_4:55776630-55776649 | None:intergenic | 30.0% | |
| CTTATCTCTTTATTCTGTAC+AGG | - | chr6_4:55776640-55776659 | Msa0991400:intron | 30.0% | |
| !!! | TTGTCAGTTTTGCTATTAGT+TGG | - | chr6_4:55776838-55776857 | Msa0991400:intron | 30.0% |
| !!! | TTTTGCTATTAGTTGGCTTA+GGG | - | chr6_4:55776845-55776864 | Msa0991400:intron | 30.0% |
| ! | AAACGATGCTTTTATCATTC+TGG | - | chr6_4:55777019-55777038 | Msa0991400:intron | 30.0% |
| TGATTGATCAACAAAAAACC+TGG | - | chr6_4:55777073-55777092 | Msa0991400:intron | 30.0% | |
| AATTGTACAATATCAACTCC+AGG | + | chr6_4:55777094-55777113 | None:intergenic | 30.0% | |
| ATGACATCTGTTTATTGTTC+AGG | + | chr6_4:55777188-55777207 | None:intergenic | 30.0% | |
| CTATAAAGAAATTGAAGGAG+AGG | - | chr6_4:55777217-55777236 | Msa0991400:intron | 30.0% | |
| ! | TTAATTCATGTGTTGGTACT+TGG | - | chr6_4:55777478-55777497 | Msa0991400:CDS | 30.0% |
| ! | TAGAAATCTGAGGTAACAAA+AGG | + | chr6_4:55777552-55777571 | None:intergenic | 30.0% |
| AAAGAATCTGTATGAAGAGA+TGG | + | chr6_4:55775345-55775364 | None:intergenic | 30.0% | |
| !! | ATTAGTAAAAGTTGATAGGC+TGG | - | chr6_4:55775389-55775408 | Msa0991400:intron | 30.0% |
| !! | TTTCTGAAGACTTTTCTAAG+AGG | - | chr6_4:55775423-55775442 | Msa0991400:intron | 30.0% |
| !! | TTTTCTAAGAGGTGACTATT+TGG | - | chr6_4:55775434-55775453 | Msa0991400:intron | 30.0% |
| ! | GTTTGATCATAATGGTTTGT+TGG | - | chr6_4:55775824-55775843 | Msa0991400:intron | 30.0% |
| !! | TTGATCATAATGGTTTGTTG+GGG | - | chr6_4:55775826-55775845 | Msa0991400:intron | 30.0% |
| !! | CTCTTTTGACCTTTTGTTTA+GGG | - | chr6_4:55775973-55775992 | Msa0991400:intron | 30.0% |
| TAAAACTTGCATTTCATGGA+TGG | - | chr6_4:55776017-55776036 | Msa0991400:intron | 30.0% | |
| AAAACTTGCATTTCATGGAT+GGG | - | chr6_4:55776018-55776037 | Msa0991400:intron | 30.0% | |
| TCATGGATGGGATTAATAAA+CGG | - | chr6_4:55776030-55776049 | Msa0991400:intron | 30.0% | |
| AGTCTGCATAATTCAAAACT+TGG | - | chr6_4:55776094-55776113 | Msa0991400:intron | 30.0% | |
| ! | TCTTATCGCTGATTATAGTT+AGG | - | chr6_4:55776211-55776230 | Msa0991400:CDS | 30.0% |
| TGATTATAGTTAGGCTTTCT+GGG | - | chr6_4:55776220-55776239 | Msa0991400:CDS | 30.0% | |
| TATAGTGATTGTAGATGATC+TGG | - | chr6_4:55776257-55776276 | Msa0991400:intron | 30.0% | |
| ATAGTGATTGTAGATGATCT+GGG | - | chr6_4:55776258-55776277 | Msa0991400:intron | 30.0% | |
| TTGCAATATTTGCAACTACT+CGG | - | chr6_4:55776330-55776349 | Msa0991400:intron | 30.0% | |
| ACCTAAACAAAGAATCACAA+AGG | + | chr6_4:55776356-55776375 | None:intergenic | 30.0% | |
| !!! | TCGTTCTTCTTTTTTGTTCT+AGG | - | chr6_4:55776437-55776456 | Msa0991400:intron | 30.0% |
| ! | TATGTAAAAAGCAGGGTTTT+GGG | - | chr6_4:55776585-55776604 | Msa0991400:intron | 30.0% |
| AAGAGATAAGCTAAGAATGA+AGG | + | chr6_4:55776630-55776649 | None:intergenic | 30.0% | |
| CTTATCTCTTTATTCTGTAC+AGG | - | chr6_4:55776640-55776659 | Msa0991400:intron | 30.0% | |
| !!! | TTGTCAGTTTTGCTATTAGT+TGG | - | chr6_4:55776838-55776857 | Msa0991400:intron | 30.0% |
| !!! | TTTTGCTATTAGTTGGCTTA+GGG | - | chr6_4:55776845-55776864 | Msa0991400:intron | 30.0% |
| ! | AAACGATGCTTTTATCATTC+TGG | - | chr6_4:55777019-55777038 | Msa0991400:intron | 30.0% |
| TGATTGATCAACAAAAAACC+TGG | - | chr6_4:55777073-55777092 | Msa0991400:intron | 30.0% | |
| AATTGTACAATATCAACTCC+AGG | + | chr6_4:55777094-55777113 | None:intergenic | 30.0% | |
| ATGACATCTGTTTATTGTTC+AGG | + | chr6_4:55777188-55777207 | None:intergenic | 30.0% | |
| CTATAAAGAAATTGAAGGAG+AGG | - | chr6_4:55777217-55777236 | Msa0991400:intron | 30.0% | |
| ! | TTAATTCATGTGTTGGTACT+TGG | - | chr6_4:55777478-55777497 | Msa0991400:CDS | 30.0% |
| ! | TAGAAATCTGAGGTAACAAA+AGG | + | chr6_4:55777552-55777571 | None:intergenic | 30.0% |
| AATGCTTTAATCACGGATTC+AGG | + | chr6_4:55775312-55775331 | None:intergenic | 35.0% | |
| CAAGAGAAAATGAGCAAATC+TGG | + | chr6_4:55775460-55775479 | None:intergenic | 35.0% | |
| CCTAAACAAAAGGTCAAAAG+AGG | + | chr6_4:55775975-55775994 | None:intergenic | 35.0% | |
| !! | CCTCTTTTGACCTTTTGTTT+AGG | - | chr6_4:55775972-55775991 | Msa0991400:intron | 35.0% |
| !! | TTGACCTTTTGTTTAGGGAT+AGG | - | chr6_4:55775978-55775997 | Msa0991400:intron | 35.0% |
| TGTTCCTATCCCTAAACAAA+AGG | + | chr6_4:55775985-55776004 | None:intergenic | 35.0% | |
| CTGATTATAGTTAGGCTTTC+TGG | - | chr6_4:55776219-55776238 | Msa0991400:CDS | 35.0% | |
| ! | GCCTTTGTGATTCTTTGTTT+AGG | - | chr6_4:55776352-55776371 | Msa0991400:intron | 35.0% |
| !! | TTTGTTCTAGGAACGTGTTA+AGG | - | chr6_4:55776449-55776468 | Msa0991400:intron | 35.0% |
| ! | CTATGTAAAAAGCAGGGTTT+TGG | - | chr6_4:55776584-55776603 | Msa0991400:intron | 35.0% |
| ! | TATTCTGTACAGGGTTTTCA+AGG | - | chr6_4:55776650-55776669 | Msa0991400:intron | 35.0% |
| ! | TTTTGAGCTTGATGTTGGTA+TGG | + | chr6_4:55776729-55776748 | None:intergenic | 35.0% |
| AAAACAGTCGCAACATAACA+GGG | + | chr6_4:55776819-55776838 | None:intergenic | 35.0% | |
| AAAAACAGTCGCAACATAAC+AGG | + | chr6_4:55776820-55776839 | None:intergenic | 35.0% | |
| !!! | GTTTTGCTATTAGTTGGCTT+AGG | - | chr6_4:55776844-55776863 | Msa0991400:intron | 35.0% |
| !! | TTTGCTATTAGTTGGCTTAG+GGG | - | chr6_4:55776846-55776865 | Msa0991400:intron | 35.0% |
| TACTATCACAATTCAGACCT+CGG | + | chr6_4:55776876-55776895 | None:intergenic | 35.0% | |
| TGCAAGTTACATAACTGACA+GGG | + | chr6_4:55777412-55777431 | None:intergenic | 35.0% | |
| ! | TTCTAGCGCTGAATATAAAC+TGG | - | chr6_4:55777567-55777586 | Msa0991400:CDS | 35.0% |
| GTACAAAATGTTCAAGAGCA+TGG | - | chr6_4:55777589-55777608 | Msa0991400:CDS | 35.0% | |
| AATGCTTTAATCACGGATTC+AGG | + | chr6_4:55775312-55775331 | None:intergenic | 35.0% | |
| CAAGAGAAAATGAGCAAATC+TGG | + | chr6_4:55775460-55775479 | None:intergenic | 35.0% | |
| CCTAAACAAAAGGTCAAAAG+AGG | + | chr6_4:55775975-55775994 | None:intergenic | 35.0% | |
| !! | CCTCTTTTGACCTTTTGTTT+AGG | - | chr6_4:55775972-55775991 | Msa0991400:intron | 35.0% |
| !! | TTGACCTTTTGTTTAGGGAT+AGG | - | chr6_4:55775978-55775997 | Msa0991400:intron | 35.0% |
| TGTTCCTATCCCTAAACAAA+AGG | + | chr6_4:55775985-55776004 | None:intergenic | 35.0% | |
| CTGATTATAGTTAGGCTTTC+TGG | - | chr6_4:55776219-55776238 | Msa0991400:CDS | 35.0% | |
| ! | GCCTTTGTGATTCTTTGTTT+AGG | - | chr6_4:55776352-55776371 | Msa0991400:intron | 35.0% |
| !! | TTTGTTCTAGGAACGTGTTA+AGG | - | chr6_4:55776449-55776468 | Msa0991400:intron | 35.0% |
| ! | CTATGTAAAAAGCAGGGTTT+TGG | - | chr6_4:55776584-55776603 | Msa0991400:intron | 35.0% |
| ! | TATTCTGTACAGGGTTTTCA+AGG | - | chr6_4:55776650-55776669 | Msa0991400:intron | 35.0% |
| ! | TTTTGAGCTTGATGTTGGTA+TGG | + | chr6_4:55776729-55776748 | None:intergenic | 35.0% |
| AAAACAGTCGCAACATAACA+GGG | + | chr6_4:55776819-55776838 | None:intergenic | 35.0% | |
| AAAAACAGTCGCAACATAAC+AGG | + | chr6_4:55776820-55776839 | None:intergenic | 35.0% | |
| !!! | GTTTTGCTATTAGTTGGCTT+AGG | - | chr6_4:55776844-55776863 | Msa0991400:intron | 35.0% |
| !! | TTTGCTATTAGTTGGCTTAG+GGG | - | chr6_4:55776846-55776865 | Msa0991400:intron | 35.0% |
| TACTATCACAATTCAGACCT+CGG | + | chr6_4:55776876-55776895 | None:intergenic | 35.0% | |
| TGCAAGTTACATAACTGACA+GGG | + | chr6_4:55777412-55777431 | None:intergenic | 35.0% | |
| ! | TTCTAGCGCTGAATATAAAC+TGG | - | chr6_4:55777567-55777586 | Msa0991400:CDS | 35.0% |
| GTACAAAATGTTCAAGAGCA+TGG | - | chr6_4:55777589-55777608 | Msa0991400:CDS | 35.0% | |
| AGGATCATAAGAGGCTTTCT+CGG | + | chr6_4:55775292-55775311 | None:intergenic | 40.0% | |
| TGGATGGGATTAATAAACGG+TGG | - | chr6_4:55776033-55776052 | Msa0991400:intron | 40.0% | |
| ! | GATATGGTGCAATTGAGTTG+AGG | - | chr6_4:55776158-55776177 | Msa0991400:CDS | 40.0% |
| GAAGATTGATGAAGGTCAAG+AGG | + | chr6_4:55776302-55776321 | None:intergenic | 40.0% | |
| ACGTAAGTATGATCAGTGAC+TGG | - | chr6_4:55776412-55776431 | Msa0991400:CDS | 40.0% | |
| ! | ATTTGTTGGGTTCACCTCAA+AGG | + | chr6_4:55776526-55776545 | None:intergenic | 40.0% |
| TAATCATCACCGTAGGAAAC+CGG | + | chr6_4:55776701-55776720 | None:intergenic | 40.0% | |
| GGAACTAACCAAAAACCTCT+GGG | + | chr6_4:55776752-55776771 | None:intergenic | 40.0% | |
| TGGAACTAACCAAAAACCTC+TGG | + | chr6_4:55776753-55776772 | None:intergenic | 40.0% | |
| AGCTGCAAAAAAAACAGTGC+TGG | + | chr6_4:55776773-55776792 | None:intergenic | 40.0% | |
| ACTATCACAATTCAGACCTC+GGG | + | chr6_4:55776875-55776894 | None:intergenic | 40.0% | |
| TTCTGGTCTGTAAAACTCTG+AGG | - | chr6_4:55777036-55777055 | Msa0991400:intron | 40.0% | |
| AGAGTTGCGTCAAACTATTG+CGG | - | chr6_4:55777161-55777180 | Msa0991400:intron | 40.0% | |
| GACTGTGGAAATGGATGATA+AGG | - | chr6_4:55777239-55777258 | Msa0991400:intron | 40.0% | |
| GTGCAAGTTACATAACTGAC+AGG | + | chr6_4:55777413-55777432 | None:intergenic | 40.0% | |
| TATTCAGCGCTAGAAATCTG+AGG | + | chr6_4:55777562-55777581 | None:intergenic | 40.0% | |
| AGGATCATAAGAGGCTTTCT+CGG | + | chr6_4:55775292-55775311 | None:intergenic | 40.0% | |
| TGGATGGGATTAATAAACGG+TGG | - | chr6_4:55776033-55776052 | Msa0991400:intron | 40.0% | |
| ! | GATATGGTGCAATTGAGTTG+AGG | - | chr6_4:55776158-55776177 | Msa0991400:CDS | 40.0% |
| GAAGATTGATGAAGGTCAAG+AGG | + | chr6_4:55776302-55776321 | None:intergenic | 40.0% | |
| ACGTAAGTATGATCAGTGAC+TGG | - | chr6_4:55776412-55776431 | Msa0991400:CDS | 40.0% | |
| ! | ATTTGTTGGGTTCACCTCAA+AGG | + | chr6_4:55776526-55776545 | None:intergenic | 40.0% |
| TAATCATCACCGTAGGAAAC+CGG | + | chr6_4:55776701-55776720 | None:intergenic | 40.0% | |
| GGAACTAACCAAAAACCTCT+GGG | + | chr6_4:55776752-55776771 | None:intergenic | 40.0% | |
| TGGAACTAACCAAAAACCTC+TGG | + | chr6_4:55776753-55776772 | None:intergenic | 40.0% | |
| AGCTGCAAAAAAAACAGTGC+TGG | + | chr6_4:55776773-55776792 | None:intergenic | 40.0% | |
| ACTATCACAATTCAGACCTC+GGG | + | chr6_4:55776875-55776894 | None:intergenic | 40.0% | |
| TTCTGGTCTGTAAAACTCTG+AGG | - | chr6_4:55777036-55777055 | Msa0991400:intron | 40.0% | |
| AGAGTTGCGTCAAACTATTG+CGG | - | chr6_4:55777161-55777180 | Msa0991400:intron | 40.0% | |
| GACTGTGGAAATGGATGATA+AGG | - | chr6_4:55777239-55777258 | Msa0991400:intron | 40.0% | |
| GTGCAAGTTACATAACTGAC+AGG | + | chr6_4:55777413-55777432 | None:intergenic | 40.0% | |
| TATTCAGCGCTAGAAATCTG+AGG | + | chr6_4:55777562-55777581 | None:intergenic | 40.0% | |
| CACGGATTCAGGATCATAAG+AGG | + | chr6_4:55775301-55775320 | None:intergenic | 45.0% | |
| AGTTGAGGAGATCAATGCGA+AGG | - | chr6_4:55776173-55776192 | Msa0991400:CDS | 45.0% | |
| CAATGCGAAGGTTGTGTCAT+AGG | - | chr6_4:55776185-55776204 | Msa0991400:CDS | 45.0% | |
| GATGAAGGTCAAGAGGACAT+AGG | + | chr6_4:55776295-55776314 | None:intergenic | 45.0% | |
| GAATCTTCACAGTTCACTCC+TGG | - | chr6_4:55776492-55776511 | Msa0991400:intron | 45.0% | |
| !!! | TAAAAAGCAGGGTTTTGGGC+AGG | - | chr6_4:55776589-55776608 | Msa0991400:intron | 45.0% |
| GGCATCTTAATCATCACCGT+AGG | + | chr6_4:55776708-55776727 | None:intergenic | 45.0% | |
| !!! | CTGGGTTTTGAGCTTGATGT+TGG | + | chr6_4:55776734-55776753 | None:intergenic | 45.0% |
| ACATCAAGCTCAAAACCCAG+AGG | - | chr6_4:55776734-55776753 | Msa0991400:intron | 45.0% | |
| ! | GCTCAAAACCCAGAGGTTTT+TGG | - | chr6_4:55776741-55776760 | Msa0991400:intron | 45.0% |
| AAGGGAAATGCCTTCTGTTC+AGG | - | chr6_4:55777119-55777138 | Msa0991400:intron | 45.0% | |
| GAAATTGAAGGAGAGGACTG+TGG | - | chr6_4:55777224-55777243 | Msa0991400:intron | 45.0% | |
| CACGGATTCAGGATCATAAG+AGG | + | chr6_4:55775301-55775320 | None:intergenic | 45.0% | |
| AGTTGAGGAGATCAATGCGA+AGG | - | chr6_4:55776173-55776192 | Msa0991400:CDS | 45.0% | |
| CAATGCGAAGGTTGTGTCAT+AGG | - | chr6_4:55776185-55776204 | Msa0991400:CDS | 45.0% | |
| GATGAAGGTCAAGAGGACAT+AGG | + | chr6_4:55776295-55776314 | None:intergenic | 45.0% | |
| GAATCTTCACAGTTCACTCC+TGG | - | chr6_4:55776492-55776511 | Msa0991400:intron | 45.0% | |
| !!! | TAAAAAGCAGGGTTTTGGGC+AGG | - | chr6_4:55776589-55776608 | Msa0991400:intron | 45.0% |
| GGCATCTTAATCATCACCGT+AGG | + | chr6_4:55776708-55776727 | None:intergenic | 45.0% | |
| !!! | CTGGGTTTTGAGCTTGATGT+TGG | + | chr6_4:55776734-55776753 | None:intergenic | 45.0% |
| ACATCAAGCTCAAAACCCAG+AGG | - | chr6_4:55776734-55776753 | Msa0991400:intron | 45.0% | |
| ! | GCTCAAAACCCAGAGGTTTT+TGG | - | chr6_4:55776741-55776760 | Msa0991400:intron | 45.0% |
| AAGGGAAATGCCTTCTGTTC+AGG | - | chr6_4:55777119-55777138 | Msa0991400:intron | 45.0% | |
| GAAATTGAAGGAGAGGACTG+TGG | - | chr6_4:55777224-55777243 | Msa0991400:intron | 45.0% | |
| !!! | TTTTTTTAAATAAAAGAAAT+TGG | - | chr6_4:55775793-55775812 | Msa0991400:intron | 5.0% |
| !!! | TTTTTTTAAATAAAAGAAAT+TGG | - | chr6_4:55775793-55775812 | Msa0991400:intron | 5.0% |
| ! | TTTCAAGGCAGAAGTGCAGC+TGG | - | chr6_4:55776665-55776684 | Msa0991400:intron | 50.0% |
| GCTGATAGTCCGGTTTCCTA+CGG | - | chr6_4:55776689-55776708 | Msa0991400:intron | 50.0% | |
| GGAAATGCCTTCTGTTCAGG+AGG | - | chr6_4:55777122-55777141 | Msa0991400:intron | 50.0% | |
| AATGCCTTCTGTTCAGGAGG+TGG | - | chr6_4:55777125-55777144 | Msa0991400:intron | 50.0% | |
| GAAGGAGAGGACTGTGGAAA+TGG | - | chr6_4:55777230-55777249 | Msa0991400:intron | 50.0% | |
| ! | TTTCAAGGCAGAAGTGCAGC+TGG | - | chr6_4:55776665-55776684 | Msa0991400:intron | 50.0% |
| GCTGATAGTCCGGTTTCCTA+CGG | - | chr6_4:55776689-55776708 | Msa0991400:intron | 50.0% | |
| GGAAATGCCTTCTGTTCAGG+AGG | - | chr6_4:55777122-55777141 | Msa0991400:intron | 50.0% | |
| AATGCCTTCTGTTCAGGAGG+TGG | - | chr6_4:55777125-55777144 | Msa0991400:intron | 50.0% | |
| GAAGGAGAGGACTGTGGAAA+TGG | - | chr6_4:55777230-55777249 | Msa0991400:intron | 50.0% | |
| TCCTGGTGCTCAGTCCTTTG+AGG | - | chr6_4:55776509-55776528 | Msa0991400:CDS | 55.0% | |
| ACCTCAAAGGACTGAGCACC+AGG | + | chr6_4:55776513-55776532 | None:intergenic | 55.0% | |
| TGCAGCTGGAGCTGATAGTC+CGG | - | chr6_4:55776679-55776698 | Msa0991400:intron | 55.0% | |
| GCATCCACCTCCTGAACAGA+AGG | + | chr6_4:55777132-55777151 | None:intergenic | 55.0% | |
| TCCTGGTGCTCAGTCCTTTG+AGG | - | chr6_4:55776509-55776528 | Msa0991400:CDS | 55.0% | |
| ACCTCAAAGGACTGAGCACC+AGG | + | chr6_4:55776513-55776532 | None:intergenic | 55.0% | |
| TGCAGCTGGAGCTGATAGTC+CGG | - | chr6_4:55776679-55776698 | Msa0991400:intron | 55.0% | |
| GCATCCACCTCCTGAACAGA+AGG | + | chr6_4:55777132-55777151 | None:intergenic | 55.0% | |
| ! | GTTGGCTTAGGGGTTACCCG+AGG | - | chr6_4:55776856-55776875 | Msa0991400:intron | 60.0% |
| ! | GTTGGCTTAGGGGTTACCCG+AGG | - | chr6_4:55776856-55776875 | Msa0991400:intron | 60.0% |
| ! | GGAGCGTTCGACGCGCTTCA+AGG | - | chr6_4:55776470-55776489 | Msa0991400:intron | 65.0% |
| ! | GGAGCGTTCGACGCGCTTCA+AGG | - | chr6_4:55776470-55776489 | Msa0991400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 55775255 | 55777654 | 55775255 | ID=Msa0991400;Name=Msa0991400 |
| chr6_4 | mRNA | 55775255 | 55777654 | 55775255 | ID=Msa0991400-mRNA-1;Parent=Msa0991400;Name=Msa0991400-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.2|0|0.5|0.6|0.83|6|0|202 |
| chr6_4 | exon | 55777465 | 55777654 | 55777465 | ID=Msa0991400-mRNA-1:exon:11318;Parent=Msa0991400-mRNA-1 |
| chr6_4 | exon | 55776496 | 55776535 | 55776496 | ID=Msa0991400-mRNA-1:exon:11317;Parent=Msa0991400-mRNA-1 |
| chr6_4 | exon | 55776379 | 55776450 | 55776379 | ID=Msa0991400-mRNA-1:exon:11316;Parent=Msa0991400-mRNA-1 |
| chr6_4 | exon | 55776154 | 55776247 | 55776154 | ID=Msa0991400-mRNA-1:exon:11315;Parent=Msa0991400-mRNA-1 |
| chr6_4 | exon | 55775649 | 55775768 | 55775649 | ID=Msa0991400-mRNA-1:exon:11314;Parent=Msa0991400-mRNA-1 |
| chr6_4 | exon | 55775255 | 55775344 | 55775255 | ID=Msa0991400-mRNA-1:exon:11313;Parent=Msa0991400-mRNA-1 |
| chr6_4 | CDS | 55777465 | 55777654 | 55777465 | ID=Msa0991400-mRNA-1:cds;Parent=Msa0991400-mRNA-1 |
| chr6_4 | CDS | 55776496 | 55776535 | 55776496 | ID=Msa0991400-mRNA-1:cds;Parent=Msa0991400-mRNA-1 |
| chr6_4 | CDS | 55776379 | 55776450 | 55776379 | ID=Msa0991400-mRNA-1:cds;Parent=Msa0991400-mRNA-1 |
| chr6_4 | CDS | 55776154 | 55776247 | 55776154 | ID=Msa0991400-mRNA-1:cds;Parent=Msa0991400-mRNA-1 |
| chr6_4 | CDS | 55775649 | 55775768 | 55775649 | ID=Msa0991400-mRNA-1:cds;Parent=Msa0991400-mRNA-1 |
| chr6_4 | CDS | 55775255 | 55775344 | 55775255 | ID=Msa0991400-mRNA-1:cds;Parent=Msa0991400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
