AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0991730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991730 MtrunA17_Chr6g0472421 94.135 341 20 0 1 341 1 341 0.0 582
Msa0991730 MtrunA17_Chr1g0203601 55.072 345 107 10 1 340 1 302 7.81e-108 317
Msa0991730 MtrunA17_Chr5g0397881 46.130 323 107 6 7 286 5 303 4.85e-80 248
Msa0991730 MtrunA17_Chr3g0134031 45.205 219 102 3 23 227 14 228 7.77e-59 194
Msa0991730 MtrunA17_Chr5g0441531 38.182 275 119 8 23 286 15 249 3.46e-53 176
Msa0991730 MtrunA17_Chr5g0402291 44.091 220 81 4 26 230 2 194 3.95e-51 171
Msa0991730 MtrunA17_Chr7g0257331 43.000 200 78 2 27 226 16 179 5.76e-45 154
Msa0991730 MtrunA17_Chr5g0410881 61.111 108 42 0 17 124 16 123 1.24e-41 151
Msa0991730 MtrunA17_Chr7g0260331 51.220 123 59 1 3 124 18 140 2.90e-40 145
Msa0991730 MtrunA17_Chr6g0467041 49.606 127 64 0 32 158 21 147 1.20e-39 142
Msa0991730 MtrunA17_Chr1g0185131 54.955 111 50 0 31 141 30 140 5.61e-39 141
Msa0991730 MtrunA17_Chr8g0375041 38.500 200 92 2 26 225 2 170 8.98e-39 138
Msa0991730 MtrunA17_Chr4g0039891 65.217 92 32 0 33 124 12 103 2.06e-38 142
Msa0991730 MtrunA17_Chr1g0204741 61.702 94 36 0 31 124 38 131 6.23e-37 135
Msa0991730 MtrunA17_Chr8g0378061 49.612 129 65 0 34 162 23 151 1.04e-36 138
Msa0991730 MtrunA17_Chr8g0379701 59.596 99 39 1 26 124 6 103 1.33e-36 136
Msa0991730 MtrunA17_Chr4g0047421 36.585 205 92 5 31 231 31 201 5.63e-36 129
Msa0991730 MtrunA17_Chr3g0135831 58.511 94 39 0 31 124 44 137 7.73e-35 130
Msa0991730 MtrunA17_Chr6g0485571 57.143 98 42 0 27 124 5 102 3.73e-34 128
Msa0991730 MtrunA17_Chr4g0071051 59.140 93 38 0 31 123 99 191 1.38e-33 128
Msa0991730 MtrunA17_Chr2g0284481 48.739 119 61 0 33 151 15 133 2.07e-33 127
Msa0991730 MtrunA17_Chr2g0330821 53.333 105 48 1 31 134 77 181 2.30e-32 124
Msa0991730 MtrunA17_Chr8g0392001 59.574 94 37 1 32 124 21 114 2.40e-31 121
Msa0991730 MtrunA17_Chr1g0179321 56.757 74 32 0 19 92 35 108 5.62e-23 92.0
Msa0991730 MtrunA17_Chr4g0023771 57.377 61 25 1 33 92 15 75 1.20e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991730 AT5G62020.1 47.321 336 103 9 26 340 16 298 4.13e-87 264
Msa0991730 AT4G11660.1 46.243 346 122 8 25 329 51 373 2.88e-79 247
Msa0991730 AT1G46264.1 47.783 203 102 2 28 227 29 230 1.27e-56 187
Msa0991730 AT4G36990.1 42.857 217 84 3 21 226 2 189 2.41e-51 172
Msa0991730 AT2G41690.1 43.939 198 93 3 31 228 38 217 1.17e-44 153
Msa0991730 AT4G17750.1 63.725 102 37 0 23 124 42 143 1.96e-40 148
Msa0991730 AT3G22830.1 60.000 110 44 0 15 124 43 152 4.57e-40 145
Msa0991730 AT1G32330.2 67.021 94 31 0 31 124 35 128 9.60e-40 146
Msa0991730 AT1G32330.1 67.021 94 31 0 31 124 35 128 1.01e-39 146
Msa0991730 AT3G02990.1 66.667 96 31 1 29 124 20 114 8.45e-39 143
Msa0991730 AT5G43840.1 59.223 103 42 0 31 133 17 119 1.24e-38 139
Msa0991730 AT3G51910.1 55.340 103 46 0 31 133 27 129 3.80e-38 137
Msa0991730 AT5G16820.1 65.625 96 32 1 29 124 24 118 6.04e-37 139
Msa0991730 AT5G16820.2 65.625 96 32 1 29 124 24 118 6.04e-37 139
Msa0991730 AT2G26150.1 59.574 94 38 0 31 124 42 135 2.81e-36 134
Msa0991730 AT2G26150.4 59.574 94 38 0 31 124 42 135 2.81e-36 134
Msa0991730 AT3G63350.1 56.701 97 42 0 27 123 22 118 5.47e-36 132
Msa0991730 AT5G03720.2 40.984 183 61 2 33 215 55 190 5.94e-36 135
Msa0991730 AT5G03720.1 40.984 183 61 2 33 215 55 190 5.94e-36 135
Msa0991730 AT5G54070.1 55.660 106 43 1 30 131 68 173 4.16e-35 130
Msa0991730 AT4G13980.1 57.843 102 42 1 34 134 24 125 9.03e-35 132
Msa0991730 AT3G24520.1 61.053 95 37 0 30 124 14 108 1.20e-34 129
Msa0991730 AT1G67970.1 56.989 93 39 1 33 124 19 111 1.34e-31 122
Msa0991730 AT5G45710.3 56.757 111 44 2 29 139 10 116 2.77e-29 115
Msa0991730 AT5G45710.1 56.757 111 44 2 29 139 10 116 2.77e-29 115
Msa0991730 AT4G18880.1 59.596 99 39 1 26 124 9 106 4.71e-28 113
Msa0991730 AT4G18870.1 46.067 89 43 3 34 120 14 99 7.85e-19 85.9
Msa0991730 AT4G18870.1 42.391 92 50 1 29 117 139 230 1.50e-18 85.1
Msa0991730 AT1G77570.1 39.773 88 48 3 34 117 27 113 6.29e-11 60.5

Find 108 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATCAAGCGGCGGATT+TGG 0.255860 6_4:+57415254 None:intergenic
CAATTCCCAGAAGTTTCTTA+TGG 0.268062 6_4:-57414851 Msa0991730:three_prime_UTR
AACTTCCCATAAGAAACTTC+TGG 0.282124 6_4:+57414845 None:intergenic
AGAGAAAACGGTTGTGAAAA+TGG 0.297213 6_4:-57415152 Msa0991730:CDS
ATGGATCCACGTTTATTGTT+TGG 0.338781 6_4:-57415975 Msa0991730:CDS
CATAAGAAACTTCTGGGAAT+TGG 0.340004 6_4:+57414852 None:intergenic
CGAGAAGGTACTAGTTAGTT+AGG 0.391090 6_4:+57416282 None:intergenic
GAAGAAAGAAAAGGAAAGGA+AGG 0.398113 6_4:+57416257 None:intergenic
TTATTGTGTTTGAAATACTT+TGG 0.401377 6_4:+57415922 None:intergenic
GAAATGAATCCGAAGCTATT+CGG 0.407926 6_4:-57415200 Msa0991730:CDS
TTCAGATTTAGGTTAGATAG+AGG 0.408003 6_4:-57414964 Msa0991730:three_prime_UTR
GTTATTTCGTGGAACGAAGA+TGG 0.410793 6_4:-57415994 Msa0991730:CDS
GTAATTGTGGTGGTTCTAGA+AGG 0.411908 6_4:+57416192 None:intergenic
AGGTTCGGTGGAGAATAAAA+AGG 0.415845 6_4:+57416212 None:intergenic
AATTCCCAGAAGTTTCTTAT+GGG 0.416864 6_4:-57414850 Msa0991730:three_prime_UTR
GGGTGTTGCAACGGTGGTTG+TGG 0.423416 6_4:+57416098 None:intergenic
AGAAAGAGAGAAGAAAGAAA+AGG 0.428674 6_4:+57416248 None:intergenic
CATGGCTCCTTCGCCAGCTC+CGG 0.430979 6_4:-57416142 Msa0991730:CDS
TAGGTTAGATAGAGGTAATG+AGG 0.433010 6_4:-57414956 Msa0991730:three_prime_UTR
TTCTCTCTTTCTCTTCATCA+TGG 0.438998 6_4:-57416160 Msa0991730:exon
GTCAAACTCCGGTGAAGAAC+AGG 0.439484 6_4:-57415495 Msa0991730:CDS
CTTGATGTAAGATTAATGAT+AGG 0.441886 6_4:+57414681 None:intergenic
AAGCTATTCGGTGTGGCGAT+TGG 0.446939 6_4:-57415188 Msa0991730:CDS
TTCTTCACCGGCACGTGCAC+CGG 0.455123 6_4:-57415459 Msa0991730:CDS
GGCTCCTTCGCCAGCTCCGG+TGG 0.461075 6_4:-57416139 Msa0991730:CDS
GCTTGATTTGATGCCGGCGG+TGG 0.464333 6_4:-57415243 Msa0991730:CDS
TTTGAAAATTCCCACCGGTC+AGG 0.467906 6_4:+57415713 None:intergenic
TGGATTCACCGCCGTCATAC+CGG 0.469995 6_4:+57415274 None:intergenic
TCCTTCACCGGTACTGTTGA+CGG 0.472445 6_4:-57415549 Msa0991730:CDS
ACTTCCCATAAGAAACTTCT+GGG 0.474674 6_4:+57414846 None:intergenic
TGTTCTTCACCGGAGTTTGA+CGG 0.477010 6_4:+57415497 None:intergenic
GATAGAGGTAATGAGGGTGT+AGG 0.478655 6_4:-57414949 Msa0991730:three_prime_UTR
GAGAGAAGAAAGAAAAGGAA+AGG 0.479940 6_4:+57416253 None:intergenic
TGTGGTGGTTCTAGAAGGTT+CGG 0.480407 6_4:+57416197 None:intergenic
ATAGAGGTAATGAGGGTGTA+GGG 0.481735 6_4:-57414948 Msa0991730:three_prime_UTR
AAATTGAAAATACAAAGAAA+AGG 0.491305 6_4:+57414793 None:intergenic
AAGCAAATTACTAGCAAAGA+TGG 0.500668 6_4:+57415945 None:intergenic
ACGTGTGTCGTTTAACCGTA+TGG 0.506316 6_4:-57414877 Msa0991730:three_prime_UTR
GCAAAACGAGTTAGAGAAAA+CGG 0.508281 6_4:-57415164 Msa0991730:CDS
ATTGAGTTGACGAACAAAGC+TGG 0.509850 6_4:+57415894 None:intergenic
GCTACATCAACCTGGTTCTA+CGG 0.510688 6_4:-57415102 Msa0991730:CDS
ATCGCCACACCGAATAGCTT+CGG 0.514928 6_4:+57415191 None:intergenic
AATTGAAAATACAAAGAAAA+GGG 0.518680 6_4:+57414794 None:intergenic
GCTCAAGGAAGTAGAGAATC+CGG 0.523566 6_4:-57415293 Msa0991730:CDS
GGACGTGAAATCTGAACCGT+TGG 0.523870 6_4:-57415081 Msa0991730:CDS
GATTTCACGTCCGTAGAACC+AGG 0.525961 6_4:+57415092 None:intergenic
AAATTACTAGCAAAGATGGT+GGG 0.528220 6_4:+57415949 None:intergenic
GAGTTTGACGGTGAAATCAT+CGG 0.530218 6_4:+57415509 None:intergenic
AGGTTAGATAGAGGTAATGA+GGG 0.532271 6_4:-57414955 Msa0991730:three_prime_UTR
GTCTTCTATGTGAGATTCAA+AGG 0.536038 6_4:-57415664 Msa0991730:CDS
GGTATTACCGTCAACAGTAC+CGG 0.536641 6_4:+57415542 None:intergenic
TTCTGGGAATTGGTCCCATA+CGG 0.537481 6_4:+57414862 None:intergenic
GACGGTTGCAGTTCCTTCAC+CGG 0.537577 6_4:-57415561 Msa0991730:CDS
TCGACGAAAACGAGAGGTTG+AGG 0.541634 6_4:-57415427 Msa0991730:CDS
CGTGCATCTCCGCGTGCACA+CGG 0.542038 6_4:+57414916 None:intergenic
CTCAAGGGTGGGTGTTGCAA+CGG 0.547090 6_4:+57416089 None:intergenic
TCCGCCGCTTGATTTGATGC+CGG 0.547623 6_4:-57415249 Msa0991730:CDS
AAGTAGAGAATCCGGTATGA+CGG 0.547644 6_4:-57415285 Msa0991730:CDS
GATATCATCGAGTTCTTCAC+CGG 0.561771 6_4:-57415471 Msa0991730:CDS
CAAACAGACGGTGGTGCTCA+AGG 0.562268 6_4:-57415308 Msa0991730:CDS
GAATAGATCTCTGAGACTCA+AGG 0.566281 6_4:+57416073 None:intergenic
AATAGATCTCTGAGACTCAA+GGG 0.568049 6_4:+57416074 None:intergenic
CGTGTGTCGTTTAACCGTAT+GGG 0.569154 6_4:-57414876 Msa0991730:three_prime_UTR
CTTCGGATTCATTTCCTCGC+CGG 0.573414 6_4:+57415208 None:intergenic
CTATCGACGAGGTTATTTCG+TGG 0.578836 6_4:-57416005 Msa0991730:CDS
GAAATCATCGGCATCGCCGT+TGG 0.579266 6_4:+57415521 None:intergenic
ACAGACGACGGTGAAGGTGT+TGG 0.580465 6_4:+57415626 None:intergenic
TGATATCACCTGTTCTTCAC+CGG 0.582429 6_4:+57415487 None:intergenic
ATGATTTCACCGTCAAACTC+CGG 0.595073 6_4:-57415506 Msa0991730:CDS
AACAATAACACTCAAACAGA+CGG 0.595180 6_4:-57415320 Msa0991730:CDS
ACCGTCAACAGTACCGGTGA+AGG 0.597630 6_4:+57415548 None:intergenic
TCATGTTCTTGACAATCCAA+CGG 0.598951 6_4:+57415065 None:intergenic
TTGTTGCGGCTACATCAACC+TGG 0.602172 6_4:-57415110 Msa0991730:CDS
TTAGAAAAGTAGTACCTGAC+CGG 0.612069 6_4:-57415727 Msa0991730:CDS
CAAATTACTAGCAAAGATGG+TGG 0.612678 6_4:+57415948 None:intergenic
ATACAACAAAGGTACATCTA+CGG 0.613163 6_4:+57414723 None:intergenic
AATTACTAGCAAAGATGGTG+GGG 0.618873 6_4:+57415950 None:intergenic
AAGGGTGGGTGTTGCAACGG+TGG 0.622209 6_4:+57416092 None:intergenic
AAGGAAAGGAAGGAACGAGA+AGG 0.627761 6_4:+57416267 None:intergenic
ACCGCCGGCATCAAATCAAG+CGG 0.631218 6_4:+57415245 None:intergenic
GCCGCTTGATTTGATGCCGG+CGG 0.632055 6_4:-57415246 Msa0991730:CDS
ACAGACACAGACGACGGTGA+AGG 0.632232 6_4:+57415620 None:intergenic
AAAAGTAGTACCTGACCGGT+GGG 0.635759 6_4:-57415723 Msa0991730:CDS
GATCTCTGAGACTCAAGGGT+GGG 0.636992 6_4:+57416078 None:intergenic
AGCAGAAACTACAACAGCGA+CGG 0.641238 6_4:-57415579 Msa0991730:CDS
ACTCATTTGAAAATTCCCAC+CGG 0.642486 6_4:+57415708 None:intergenic
GAGAGGATGATACGTTGTTG+CGG 0.642882 6_4:-57415124 Msa0991730:CDS
GGTGGTTCTAGAAGGTTCGG+TGG 0.645498 6_4:+57416200 None:intergenic
AATCTGAGACCGTGTGCACG+CGG 0.650854 6_4:-57414925 Msa0991730:three_prime_UTR
GAAAAGTAGTACCTGACCGG+TGG 0.652133 6_4:-57415724 Msa0991730:CDS
AATTCTAAACAATACAACAA+AGG 0.657539 6_4:+57414712 None:intergenic
AGCTTCTCGACGAAAACGAG+AGG 0.661566 6_4:-57415433 Msa0991730:CDS
TTGTGAAAATGGTGAAAGAG+AGG 0.661829 6_4:-57415141 Msa0991730:CDS
TAGAGAATCCGGTATGACGG+CGG 0.661957 6_4:-57415282 Msa0991730:CDS
CGATAGATTTATCATCGACG+AGG 0.666770 6_4:+57416022 None:intergenic
CCAGCTCCGGTGGAAAACAA+CGG 0.683738 6_4:-57416129 Msa0991730:CDS
ACTGTTGACGGTAATACCAA+CGG 0.686195 6_4:-57415537 Msa0991730:CDS
AGATCTCTGAGACTCAAGGG+TGG 0.688159 6_4:+57416077 None:intergenic
GGGGTTCCAAACAATAAACG+TGG 0.694581 6_4:+57415969 None:intergenic
TTTGTGTAAATGACACGTGG+TGG 0.696706 6_4:-57414994 Msa0991730:exon
TTCTATGTGAGATTCAAAGG+AGG 0.697681 6_4:-57415661 Msa0991730:CDS
CGATGATAAATCTATCGACG+AGG 0.705066 6_4:-57416016 Msa0991730:CDS
GAATCCGAAGCTATTCGGTG+TGG 0.707189 6_4:-57415195 Msa0991730:CDS
ATGATAATGATCGAACAGCG+TGG 0.724654 6_4:-57415046 Msa0991730:CDS
GCAGAAACAGACACAGACGA+CGG 0.733840 6_4:+57415614 None:intergenic
AATAACACTCAAACAGACGG+TGG 0.734578 6_4:-57415317 Msa0991730:CDS
TATATTATGAGTGAGTGCAG+AGG 0.762443 6_4:-57414520 Msa0991730:three_prime_UTR
GAGTTTGTGTAAATGACACG+TGG 0.796727 6_4:-57414997 Msa0991730:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAAATACAAAGAAAA+GGG + chr6_4:57416008-57416027 None:intergenic 15.0%
!! AAATTGAAAATACAAAGAAA+AGG + chr6_4:57416009-57416028 None:intergenic 15.0%
!!! GTATTTTCAATTTTTTCTTT+TGG - chr6_4:57416016-57416035 Msa0991730:CDS 15.0%
!!! AATTTTTTCTTTTGGTTTTT+TGG - chr6_4:57416024-57416043 Msa0991730:CDS 15.0%
!!! ATTTTTTCTTTTGGTTTTTT+GGG - chr6_4:57416025-57416044 Msa0991730:CDS 15.0%
!! AATTGAAAATACAAAGAAAA+GGG + chr6_4:57416008-57416027 None:intergenic 15.0%
!! AAATTGAAAATACAAAGAAA+AGG + chr6_4:57416009-57416028 None:intergenic 15.0%
!!! GTATTTTCAATTTTTTCTTT+TGG - chr6_4:57416016-57416035 Msa0991730:CDS 15.0%
!!! AATTTTTTCTTTTGGTTTTT+TGG - chr6_4:57416024-57416043 Msa0991730:CDS 15.0%
!!! ATTTTTTCTTTTGGTTTTTT+GGG - chr6_4:57416025-57416044 Msa0991730:CDS 15.0%
!!! TTATATGTTTTTGTCAGAAA+CGG + chr6_4:57414757-57414776 None:intergenic 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG + chr6_4:57414880-57414899 None:intergenic 20.0%
!!! TGTTTTGTTATTTTTTTTGC+AGG - chr6_4:57415046-57415065 Msa0991730:CDS 20.0%
!!! GTTTTGTTATTTTTTTTGCA+GGG - chr6_4:57415047-57415066 Msa0991730:CDS 20.0%
!!! TTTTGGATTAAAATTAGATG+TGG - chr6_4:57416052-57416071 Msa0991730:CDS 20.0%
!! AATTCTAAACAATACAACAA+AGG + chr6_4:57416090-57416109 None:intergenic 20.0%
!!! CTTTTCTCTTTTTCATAAAA+AGG + chr6_4:57416208-57416227 None:intergenic 20.0%
!!! TTATATGTTTTTGTCAGAAA+CGG + chr6_4:57414757-57414776 None:intergenic 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG + chr6_4:57414880-57414899 None:intergenic 20.0%
!!! TGTTTTGTTATTTTTTTTGC+AGG - chr6_4:57415046-57415065 Msa0991730:CDS 20.0%
!!! GTTTTGTTATTTTTTTTGCA+GGG - chr6_4:57415047-57415066 Msa0991730:CDS 20.0%
!!! TTTTGGATTAAAATTAGATG+TGG - chr6_4:57416052-57416071 Msa0991730:CDS 20.0%
!! AATTCTAAACAATACAACAA+AGG + chr6_4:57416090-57416109 None:intergenic 20.0%
!!! CTTTTCTCTTTTTCATAAAA+AGG + chr6_4:57416208-57416227 None:intergenic 20.0%
!! AGAATTTTGTTGAGTAATTG+TGG + chr6_4:57414623-57414642 None:intergenic 25.0%
!!! TCAAATGAGTATTTTAGAAG+AGG - chr6_4:57415104-57415123 Msa0991730:CDS 25.0%
!! GTGGATTTTTATTCAGATTT+AGG - chr6_4:57415824-57415843 Msa0991730:intron 25.0%
! CTTGATGTAAGATTAATGAT+AGG + chr6_4:57416121-57416140 None:intergenic 25.0%
!! AGAATTTTGTTGAGTAATTG+TGG + chr6_4:57414623-57414642 None:intergenic 25.0%
!!! TCAAATGAGTATTTTAGAAG+AGG - chr6_4:57415104-57415123 Msa0991730:CDS 25.0%
!! GTGGATTTTTATTCAGATTT+AGG - chr6_4:57415824-57415843 Msa0991730:intron 25.0%
! CTTGATGTAAGATTAATGAT+AGG + chr6_4:57416121-57416140 None:intergenic 25.0%
AGAAAGAGAGAAGAAAGAAA+AGG + chr6_4:57414554-57414573 None:intergenic 30.0%
! ATTTTGTTGAGTAATTGTGG+TGG + chr6_4:57414620-57414639 None:intergenic 30.0%
AAATTACTAGCAAAGATGGT+GGG + chr6_4:57414853-57414872 None:intergenic 30.0%
AAGCAAATTACTAGCAAAGA+TGG + chr6_4:57414857-57414876 None:intergenic 30.0%
AACAATAACACTCAAACAGA+CGG - chr6_4:57415479-57415498 Msa0991730:CDS 30.0%
! TTCAGATTTAGGTTAGATAG+AGG - chr6_4:57415835-57415854 Msa0991730:intron 30.0%
AATTCCCAGAAGTTTCTTAT+GGG - chr6_4:57415949-57415968 Msa0991730:CDS 30.0%
!!! TTGGTTTTTTGGGTACTTTT+TGG - chr6_4:57416035-57416054 Msa0991730:CDS 30.0%
! ATACAACAAAGGTACATCTA+CGG + chr6_4:57416079-57416098 None:intergenic 30.0%
AGAAAGAGAGAAGAAAGAAA+AGG + chr6_4:57414554-57414573 None:intergenic 30.0%
! ATTTTGTTGAGTAATTGTGG+TGG + chr6_4:57414620-57414639 None:intergenic 30.0%
AAATTACTAGCAAAGATGGT+GGG + chr6_4:57414853-57414872 None:intergenic 30.0%
AAGCAAATTACTAGCAAAGA+TGG + chr6_4:57414857-57414876 None:intergenic 30.0%
AACAATAACACTCAAACAGA+CGG - chr6_4:57415479-57415498 Msa0991730:CDS 30.0%
! TTCAGATTTAGGTTAGATAG+AGG - chr6_4:57415835-57415854 Msa0991730:intron 30.0%
AATTCCCAGAAGTTTCTTAT+GGG - chr6_4:57415949-57415968 Msa0991730:CDS 30.0%
!!! TTGGTTTTTTGGGTACTTTT+TGG - chr6_4:57416035-57416054 Msa0991730:CDS 30.0%
! ATACAACAAAGGTACATCTA+CGG + chr6_4:57416079-57416098 None:intergenic 30.0%
GAAGAAAGAAAAGGAAAGGA+AGG + chr6_4:57414545-57414564 None:intergenic 35.0%
GAGAGAAGAAAGAAAAGGAA+AGG + chr6_4:57414549-57414568 None:intergenic 35.0%
TTCTCTCTTTCTCTTCATCA+TGG - chr6_4:57414639-57414658 Msa0991730:three_prime_UTR 35.0%
!! AATAGATCTCTGAGACTCAA+GGG + chr6_4:57414728-57414747 None:intergenic 35.0%
ATGGATCCACGTTTATTGTT+TGG - chr6_4:57414824-57414843 Msa0991730:three_prime_UTR 35.0%
AATTACTAGCAAAGATGGTG+GGG + chr6_4:57414852-57414871 None:intergenic 35.0%
CAAATTACTAGCAAAGATGG+TGG + chr6_4:57414854-57414873 None:intergenic 35.0%
TTAGACGAATTGAAGCGATA+AGG - chr6_4:57415009-57415028 Msa0991730:CDS 35.0%
TAGACGAATTGAAGCGATAA+GGG - chr6_4:57415010-57415029 Msa0991730:CDS 35.0%
TTAGAAAAGTAGTACCTGAC+CGG - chr6_4:57415072-57415091 Msa0991730:CDS 35.0%
ACTCATTTGAAAATTCCCAC+CGG + chr6_4:57415094-57415113 None:intergenic 35.0%
GTCTTCTATGTGAGATTCAA+AGG - chr6_4:57415135-57415154 Msa0991730:CDS 35.0%
TTCTATGTGAGATTCAAAGG+AGG - chr6_4:57415138-57415157 Msa0991730:CDS 35.0%
GAAATGAATCCGAAGCTATT+CGG - chr6_4:57415599-57415618 Msa0991730:CDS 35.0%
GCAAAACGAGTTAGAGAAAA+CGG - chr6_4:57415635-57415654 Msa0991730:CDS 35.0%
AGAGAAAACGGTTGTGAAAA+TGG - chr6_4:57415647-57415666 Msa0991730:CDS 35.0%
TTGTGAAAATGGTGAAAGAG+AGG - chr6_4:57415658-57415677 Msa0991730:CDS 35.0%
TCATGTTCTTGACAATCCAA+CGG + chr6_4:57415737-57415756 None:intergenic 35.0%
TAGGTTAGATAGAGGTAATG+AGG - chr6_4:57415843-57415862 Msa0991730:intron 35.0%
AGGTTAGATAGAGGTAATGA+GGG - chr6_4:57415844-57415863 Msa0991730:intron 35.0%
! CATAAGAAACTTCTGGGAAT+TGG + chr6_4:57415950-57415969 None:intergenic 35.0%
CAATTCCCAGAAGTTTCTTA+TGG - chr6_4:57415948-57415967 Msa0991730:CDS 35.0%
ACTTCCCATAAGAAACTTCT+GGG + chr6_4:57415956-57415975 None:intergenic 35.0%
AACTTCCCATAAGAAACTTC+TGG + chr6_4:57415957-57415976 None:intergenic 35.0%
TATATTATGAGTGAGTGCAG+AGG - chr6_4:57416279-57416298 Msa0991730:five_prime_UTR 35.0%
GAAGAAAGAAAAGGAAAGGA+AGG + chr6_4:57414545-57414564 None:intergenic 35.0%
GAGAGAAGAAAGAAAAGGAA+AGG + chr6_4:57414549-57414568 None:intergenic 35.0%
TTCTCTCTTTCTCTTCATCA+TGG - chr6_4:57414639-57414658 Msa0991730:three_prime_UTR 35.0%
!! AATAGATCTCTGAGACTCAA+GGG + chr6_4:57414728-57414747 None:intergenic 35.0%
ATGGATCCACGTTTATTGTT+TGG - chr6_4:57414824-57414843 Msa0991730:three_prime_UTR 35.0%
AATTACTAGCAAAGATGGTG+GGG + chr6_4:57414852-57414871 None:intergenic 35.0%
CAAATTACTAGCAAAGATGG+TGG + chr6_4:57414854-57414873 None:intergenic 35.0%
TTAGACGAATTGAAGCGATA+AGG - chr6_4:57415009-57415028 Msa0991730:CDS 35.0%
TAGACGAATTGAAGCGATAA+GGG - chr6_4:57415010-57415029 Msa0991730:CDS 35.0%
TTAGAAAAGTAGTACCTGAC+CGG - chr6_4:57415072-57415091 Msa0991730:CDS 35.0%
ACTCATTTGAAAATTCCCAC+CGG + chr6_4:57415094-57415113 None:intergenic 35.0%
GTCTTCTATGTGAGATTCAA+AGG - chr6_4:57415135-57415154 Msa0991730:CDS 35.0%
TTCTATGTGAGATTCAAAGG+AGG - chr6_4:57415138-57415157 Msa0991730:CDS 35.0%
GAAATGAATCCGAAGCTATT+CGG - chr6_4:57415599-57415618 Msa0991730:CDS 35.0%
GCAAAACGAGTTAGAGAAAA+CGG - chr6_4:57415635-57415654 Msa0991730:CDS 35.0%
AGAGAAAACGGTTGTGAAAA+TGG - chr6_4:57415647-57415666 Msa0991730:CDS 35.0%
TTGTGAAAATGGTGAAAGAG+AGG - chr6_4:57415658-57415677 Msa0991730:CDS 35.0%
TCATGTTCTTGACAATCCAA+CGG + chr6_4:57415737-57415756 None:intergenic 35.0%
TAGGTTAGATAGAGGTAATG+AGG - chr6_4:57415843-57415862 Msa0991730:intron 35.0%
AGGTTAGATAGAGGTAATGA+GGG - chr6_4:57415844-57415863 Msa0991730:intron 35.0%
! CATAAGAAACTTCTGGGAAT+TGG + chr6_4:57415950-57415969 None:intergenic 35.0%
CAATTCCCAGAAGTTTCTTA+TGG - chr6_4:57415948-57415967 Msa0991730:CDS 35.0%
ACTTCCCATAAGAAACTTCT+GGG + chr6_4:57415956-57415975 None:intergenic 35.0%
AACTTCCCATAAGAAACTTC+TGG + chr6_4:57415957-57415976 None:intergenic 35.0%
TATATTATGAGTGAGTGCAG+AGG - chr6_4:57416279-57416298 Msa0991730:five_prime_UTR 35.0%
!! CGAGAAGGTACTAGTTAGTT+AGG + chr6_4:57414520-57414539 None:intergenic 40.0%
!! AGGTTCGGTGGAGAATAAAA+AGG + chr6_4:57414590-57414609 None:intergenic 40.0%
!! GTAATTGTGGTGGTTCTAGA+AGG + chr6_4:57414610-57414629 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG + chr6_4:57414729-57414748 None:intergenic 40.0%
! GTTTTTGTCAGAAACGGTGT+AGG + chr6_4:57414751-57414770 None:intergenic 40.0%
CGATAGATTTATCATCGACG+AGG + chr6_4:57414780-57414799 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG - chr6_4:57414783-57414802 Msa0991730:three_prime_UTR 40.0%
! GTTATTTCGTGGAACGAAGA+TGG - chr6_4:57414805-57414824 Msa0991730:three_prime_UTR 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG + chr6_4:57414908-57414927 None:intergenic 40.0%
ACTGTTGACGGTAATACCAA+CGG - chr6_4:57415262-57415281 Msa0991730:CDS 40.0%
GAGTTTGACGGTGAAATCAT+CGG + chr6_4:57415293-57415312 None:intergenic 40.0%
ATGATTTCACCGTCAAACTC+CGG - chr6_4:57415293-57415312 Msa0991730:CDS 40.0%
TGATATCACCTGTTCTTCAC+CGG + chr6_4:57415315-57415334 None:intergenic 40.0%
GATATCATCGAGTTCTTCAC+CGG - chr6_4:57415328-57415347 Msa0991730:CDS 40.0%
AATAACACTCAAACAGACGG+TGG - chr6_4:57415482-57415501 Msa0991730:CDS 40.0%
AAGTAGAGAATCCGGTATGA+CGG - chr6_4:57415514-57415533 Msa0991730:CDS 40.0%
! ATGATAATGATCGAACAGCG+TGG - chr6_4:57415753-57415772 Msa0991730:intron 40.0%
GAGTTTGTGTAAATGACACG+TGG - chr6_4:57415802-57415821 Msa0991730:intron 40.0%
TTTGTGTAAATGACACGTGG+TGG - chr6_4:57415805-57415824 Msa0991730:intron 40.0%
! ATAGAGGTAATGAGGGTGTA+GGG - chr6_4:57415851-57415870 Msa0991730:intron 40.0%
!! CGAGAAGGTACTAGTTAGTT+AGG + chr6_4:57414520-57414539 None:intergenic 40.0%
!! AGGTTCGGTGGAGAATAAAA+AGG + chr6_4:57414590-57414609 None:intergenic 40.0%
!! GTAATTGTGGTGGTTCTAGA+AGG + chr6_4:57414610-57414629 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG + chr6_4:57414729-57414748 None:intergenic 40.0%
! GTTTTTGTCAGAAACGGTGT+AGG + chr6_4:57414751-57414770 None:intergenic 40.0%
CGATAGATTTATCATCGACG+AGG + chr6_4:57414780-57414799 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG - chr6_4:57414783-57414802 Msa0991730:three_prime_UTR 40.0%
! GTTATTTCGTGGAACGAAGA+TGG - chr6_4:57414805-57414824 Msa0991730:three_prime_UTR 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG + chr6_4:57414908-57414927 None:intergenic 40.0%
ACTGTTGACGGTAATACCAA+CGG - chr6_4:57415262-57415281 Msa0991730:CDS 40.0%
GAGTTTGACGGTGAAATCAT+CGG + chr6_4:57415293-57415312 None:intergenic 40.0%
ATGATTTCACCGTCAAACTC+CGG - chr6_4:57415293-57415312 Msa0991730:CDS 40.0%
TGATATCACCTGTTCTTCAC+CGG + chr6_4:57415315-57415334 None:intergenic 40.0%
GATATCATCGAGTTCTTCAC+CGG - chr6_4:57415328-57415347 Msa0991730:CDS 40.0%
AATAACACTCAAACAGACGG+TGG - chr6_4:57415482-57415501 Msa0991730:CDS 40.0%
AAGTAGAGAATCCGGTATGA+CGG - chr6_4:57415514-57415533 Msa0991730:CDS 40.0%
! ATGATAATGATCGAACAGCG+TGG - chr6_4:57415753-57415772 Msa0991730:intron 40.0%
GAGTTTGTGTAAATGACACG+TGG - chr6_4:57415802-57415821 Msa0991730:intron 40.0%
TTTGTGTAAATGACACGTGG+TGG - chr6_4:57415805-57415824 Msa0991730:intron 40.0%
! ATAGAGGTAATGAGGGTGTA+GGG - chr6_4:57415851-57415870 Msa0991730:intron 40.0%
AAGGAAAGGAAGGAACGAGA+AGG + chr6_4:57414535-57414554 None:intergenic 45.0%
!! TGTGGTGGTTCTAGAAGGTT+CGG + chr6_4:57414605-57414624 None:intergenic 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG + chr6_4:57414679-57414698 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG - chr6_4:57414794-57414813 Msa0991730:three_prime_UTR 45.0%
GGGGTTCCAAACAATAAACG+TGG + chr6_4:57414833-57414852 None:intergenic 45.0%
AAAAGTAGTACCTGACCGGT+GGG - chr6_4:57415076-57415095 Msa0991730:CDS 45.0%
TTTGAAAATTCCCACCGGTC+AGG + chr6_4:57415089-57415108 None:intergenic 45.0%
AGCAGAAACTACAACAGCGA+CGG - chr6_4:57415220-57415239 Msa0991730:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG + chr6_4:57415260-57415279 None:intergenic 45.0%
TGTTCTTCACCGGAGTTTGA+CGG + chr6_4:57415305-57415324 None:intergenic 45.0%
GCTCAAGGAAGTAGAGAATC+CGG - chr6_4:57415506-57415525 Msa0991730:CDS 45.0%
! ATCAAATCAAGCGGCGGATT+TGG + chr6_4:57415548-57415567 None:intergenic 45.0%
GAGAGGATGATACGTTGTTG+CGG - chr6_4:57415675-57415694 Msa0991730:CDS 45.0%
!! GCTACATCAACCTGGTTCTA+CGG - chr6_4:57415697-57415716 Msa0991730:CDS 45.0%
! GATAGAGGTAATGAGGGTGT+AGG - chr6_4:57415850-57415869 Msa0991730:intron 45.0%
!! ACGTGTGTCGTTTAACCGTA+TGG - chr6_4:57415922-57415941 Msa0991730:CDS 45.0%
!! CGTGTGTCGTTTAACCGTAT+GGG - chr6_4:57415923-57415942 Msa0991730:CDS 45.0%
! TTCTGGGAATTGGTCCCATA+CGG + chr6_4:57415940-57415959 None:intergenic 45.0%
AAGGAAAGGAAGGAACGAGA+AGG + chr6_4:57414535-57414554 None:intergenic 45.0%
!! TGTGGTGGTTCTAGAAGGTT+CGG + chr6_4:57414605-57414624 None:intergenic 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG + chr6_4:57414679-57414698 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG - chr6_4:57414794-57414813 Msa0991730:three_prime_UTR 45.0%
GGGGTTCCAAACAATAAACG+TGG + chr6_4:57414833-57414852 None:intergenic 45.0%
AAAAGTAGTACCTGACCGGT+GGG - chr6_4:57415076-57415095 Msa0991730:CDS 45.0%
TTTGAAAATTCCCACCGGTC+AGG + chr6_4:57415089-57415108 None:intergenic 45.0%
AGCAGAAACTACAACAGCGA+CGG - chr6_4:57415220-57415239 Msa0991730:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG + chr6_4:57415260-57415279 None:intergenic 45.0%
TGTTCTTCACCGGAGTTTGA+CGG + chr6_4:57415305-57415324 None:intergenic 45.0%
GCTCAAGGAAGTAGAGAATC+CGG - chr6_4:57415506-57415525 Msa0991730:CDS 45.0%
! ATCAAATCAAGCGGCGGATT+TGG + chr6_4:57415548-57415567 None:intergenic 45.0%
GAGAGGATGATACGTTGTTG+CGG - chr6_4:57415675-57415694 Msa0991730:CDS 45.0%
!! GCTACATCAACCTGGTTCTA+CGG - chr6_4:57415697-57415716 Msa0991730:CDS 45.0%
! GATAGAGGTAATGAGGGTGT+AGG - chr6_4:57415850-57415869 Msa0991730:intron 45.0%
!! ACGTGTGTCGTTTAACCGTA+TGG - chr6_4:57415922-57415941 Msa0991730:CDS 45.0%
!! CGTGTGTCGTTTAACCGTAT+GGG - chr6_4:57415923-57415942 Msa0991730:CDS 45.0%
! TTCTGGGAATTGGTCCCATA+CGG + chr6_4:57415940-57415959 None:intergenic 45.0%
!! AAAGAAAATAAAATAATAAT+AGG + chr6_4:57414955-57414974 None:intergenic 5.0%
!! AAAGAAAATAAAATAATAAT+AGG + chr6_4:57414955-57414974 None:intergenic 5.0%
!! GATCTCTGAGACTCAAGGGT+GGG + chr6_4:57414724-57414743 None:intergenic 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG + chr6_4:57414725-57414744 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG - chr6_4:57415075-57415094 Msa0991730:CDS 50.0%
GCAGAAACAGACACAGACGA+CGG + chr6_4:57415188-57415207 None:intergenic 50.0%
TCCTTCACCGGTACTGTTGA+CGG - chr6_4:57415250-57415269 Msa0991730:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG - chr6_4:57415304-57415323 Msa0991730:CDS 50.0%
! CTCGTTTTCGTCGAGAAGCT+CGG + chr6_4:57415366-57415385 None:intergenic 50.0%
AGCTTCTCGACGAAAACGAG+AGG - chr6_4:57415366-57415385 Msa0991730:CDS 50.0%
TCGACGAAAACGAGAGGTTG+AGG - chr6_4:57415372-57415391 Msa0991730:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG - chr6_4:57415517-57415536 Msa0991730:CDS 50.0%
CTTCGGATTCATTTCCTCGC+CGG + chr6_4:57415594-57415613 None:intergenic 50.0%
! GAATCCGAAGCTATTCGGTG+TGG - chr6_4:57415604-57415623 Msa0991730:CDS 50.0%
ATCGCCACACCGAATAGCTT+CGG + chr6_4:57415611-57415630 None:intergenic 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG - chr6_4:57415611-57415630 Msa0991730:CDS 50.0%
TTGTTGCGGCTACATCAACC+TGG - chr6_4:57415689-57415708 Msa0991730:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG + chr6_4:57415710-57415729 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG - chr6_4:57415718-57415737 Msa0991730:CDS 50.0%
!! GATCTCTGAGACTCAAGGGT+GGG + chr6_4:57414724-57414743 None:intergenic 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG + chr6_4:57414725-57414744 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG - chr6_4:57415075-57415094 Msa0991730:CDS 50.0%
GCAGAAACAGACACAGACGA+CGG + chr6_4:57415188-57415207 None:intergenic 50.0%
TCCTTCACCGGTACTGTTGA+CGG - chr6_4:57415250-57415269 Msa0991730:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG - chr6_4:57415304-57415323 Msa0991730:CDS 50.0%
! CTCGTTTTCGTCGAGAAGCT+CGG + chr6_4:57415366-57415385 None:intergenic 50.0%
AGCTTCTCGACGAAAACGAG+AGG - chr6_4:57415366-57415385 Msa0991730:CDS 50.0%
TCGACGAAAACGAGAGGTTG+AGG - chr6_4:57415372-57415391 Msa0991730:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG - chr6_4:57415517-57415536 Msa0991730:CDS 50.0%
CTTCGGATTCATTTCCTCGC+CGG + chr6_4:57415594-57415613 None:intergenic 50.0%
! GAATCCGAAGCTATTCGGTG+TGG - chr6_4:57415604-57415623 Msa0991730:CDS 50.0%
ATCGCCACACCGAATAGCTT+CGG + chr6_4:57415611-57415630 None:intergenic 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG - chr6_4:57415611-57415630 Msa0991730:CDS 50.0%
TTGTTGCGGCTACATCAACC+TGG - chr6_4:57415689-57415708 Msa0991730:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG + chr6_4:57415710-57415729 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG - chr6_4:57415718-57415737 Msa0991730:CDS 50.0%
!! GGTGGTTCTAGAAGGTTCGG+TGG + chr6_4:57414602-57414621 None:intergenic 55.0%
CCAGCTCCGGTGGAAAACAA+CGG - chr6_4:57414670-57414689 Msa0991730:three_prime_UTR 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG + chr6_4:57414713-57414732 None:intergenic 55.0%
! ACAGACGACGGTGAAGGTGT+TGG + chr6_4:57415176-57415195 None:intergenic 55.0%
ACAGACACAGACGACGGTGA+AGG + chr6_4:57415182-57415201 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG - chr6_4:57415238-57415257 Msa0991730:CDS 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG + chr6_4:57415254-57415273 None:intergenic 55.0%
GAAATCATCGGCATCGCCGT+TGG + chr6_4:57415281-57415300 None:intergenic 55.0%
! TTTTCGTCGAGAAGCTCGGC+CGG + chr6_4:57415362-57415381 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG - chr6_4:57415491-57415510 Msa0991730:CDS 55.0%
TGGATTCACCGCCGTCATAC+CGG + chr6_4:57415528-57415547 None:intergenic 55.0%
! TCCGCCGCTTGATTTGATGC+CGG - chr6_4:57415550-57415569 Msa0991730:CDS 55.0%
ACCGCCGGCATCAAATCAAG+CGG + chr6_4:57415557-57415576 None:intergenic 55.0%
TGATGCCGGCGGTGGAAAAA+CGG - chr6_4:57415564-57415583 Msa0991730:CDS 55.0%
! AATCTGAGACCGTGTGCACG+CGG - chr6_4:57415874-57415893 Msa0991730:intron 55.0%
!! GGTGGTTCTAGAAGGTTCGG+TGG + chr6_4:57414602-57414621 None:intergenic 55.0%
CCAGCTCCGGTGGAAAACAA+CGG - chr6_4:57414670-57414689 Msa0991730:three_prime_UTR 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG + chr6_4:57414713-57414732 None:intergenic 55.0%
! ACAGACGACGGTGAAGGTGT+TGG + chr6_4:57415176-57415195 None:intergenic 55.0%
ACAGACACAGACGACGGTGA+AGG + chr6_4:57415182-57415201 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG - chr6_4:57415238-57415257 Msa0991730:CDS 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG + chr6_4:57415254-57415273 None:intergenic 55.0%
GAAATCATCGGCATCGCCGT+TGG + chr6_4:57415281-57415300 None:intergenic 55.0%
! TTTTCGTCGAGAAGCTCGGC+CGG + chr6_4:57415362-57415381 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG - chr6_4:57415491-57415510 Msa0991730:CDS 55.0%
TGGATTCACCGCCGTCATAC+CGG + chr6_4:57415528-57415547 None:intergenic 55.0%
! TCCGCCGCTTGATTTGATGC+CGG - chr6_4:57415550-57415569 Msa0991730:CDS 55.0%
ACCGCCGGCATCAAATCAAG+CGG + chr6_4:57415557-57415576 None:intergenic 55.0%
TGATGCCGGCGGTGGAAAAA+CGG - chr6_4:57415564-57415583 Msa0991730:CDS 55.0%
! AATCTGAGACCGTGTGCACG+CGG - chr6_4:57415874-57415893 Msa0991730:intron 55.0%
! TTTTCCACCGGAGCTGGCGA+AGG + chr6_4:57414667-57414686 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG + chr6_4:57414673-57414692 None:intergenic 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG + chr6_4:57414704-57414723 None:intergenic 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG + chr6_4:57414710-57414729 None:intergenic 60.0%
TTCTTCACCGGCACGTGCAC+CGG - chr6_4:57415340-57415359 Msa0991730:CDS 60.0%
GCCGGCATCAAATCAAGCGG+CGG + chr6_4:57415554-57415573 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG - chr6_4:57415553-57415572 Msa0991730:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG - chr6_4:57415556-57415575 Msa0991730:CDS 60.0%
!! GAGCTCCGTTTTTCCACCGC+CGG + chr6_4:57415572-57415591 None:intergenic 60.0%
GCGGTGGAAAAACGGAGCTC+CGG - chr6_4:57415572-57415591 Msa0991730:CDS 60.0%
! TTTTCCACCGGAGCTGGCGA+AGG + chr6_4:57414667-57414686 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG + chr6_4:57414673-57414692 None:intergenic 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG + chr6_4:57414704-57414723 None:intergenic 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG + chr6_4:57414710-57414729 None:intergenic 60.0%
TTCTTCACCGGCACGTGCAC+CGG - chr6_4:57415340-57415359 Msa0991730:CDS 60.0%
GCCGGCATCAAATCAAGCGG+CGG + chr6_4:57415554-57415573 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG - chr6_4:57415553-57415572 Msa0991730:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG - chr6_4:57415556-57415575 Msa0991730:CDS 60.0%
!! GAGCTCCGTTTTTCCACCGC+CGG + chr6_4:57415572-57415591 None:intergenic 60.0%
GCGGTGGAAAAACGGAGCTC+CGG - chr6_4:57415572-57415591 Msa0991730:CDS 60.0%
CATGGCTCCTTCGCCAGCTC+CGG - chr6_4:57414657-57414676 Msa0991730:three_prime_UTR 65.0%
GGAAAAACGGAGCTCCGGCG+AGG - chr6_4:57415577-57415596 Msa0991730:CDS 65.0%
CGTGCATCTCCGCGTGCACA+CGG + chr6_4:57415886-57415905 None:intergenic 65.0%
CATGGCTCCTTCGCCAGCTC+CGG - chr6_4:57414657-57414676 Msa0991730:three_prime_UTR 65.0%
GGAAAAACGGAGCTCCGGCG+AGG - chr6_4:57415577-57415596 Msa0991730:CDS 65.0%
CGTGCATCTCCGCGTGCACA+CGG + chr6_4:57415886-57415905 None:intergenic 65.0%
GGCTCCTTCGCCAGCTCCGG+TGG - chr6_4:57414660-57414679 Msa0991730:three_prime_UTR 75.0%
AGCTCGGCCGGTGCACGTGC+CGG + chr6_4:57415350-57415369 None:intergenic 75.0%
GGCTCCTTCGCCAGCTCCGG+TGG - chr6_4:57414660-57414679 Msa0991730:three_prime_UTR 75.0%
AGCTCGGCCGGTGCACGTGC+CGG + chr6_4:57415350-57415369 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 57414506 57416315 57414506 ID=Msa0991730;Name=Msa0991730
chr6_4 mRNA 57414506 57416315 57414506 ID=Msa0991730-mRNA-1;Parent=Msa0991730;Name=Msa0991730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=152|1|1|1|1|1|2|498|341
chr6_4 exon 57414506 57415753 57414506 ID=Msa0991730-mRNA-1:exon:11499;Parent=Msa0991730-mRNA-1
chr6_4 exon 57415888 57416315 57415888 ID=Msa0991730-mRNA-1:exon:11498;Parent=Msa0991730-mRNA-1
chr6_4 five_prime_UTR 57416164 57416315 57416164 ID=Msa0991730-mRNA-1:five_prime_utr;Parent=Msa0991730-mRNA-1
chr6_4 CDS 57415888 57416163 57415888 ID=Msa0991730-mRNA-1:cds;Parent=Msa0991730-mRNA-1
chr6_4 CDS 57415004 57415753 57415004 ID=Msa0991730-mRNA-1:cds;Parent=Msa0991730-mRNA-1
chr6_4 three_prime_UTR 57414506 57415003 57414506 ID=Msa0991730-mRNA-1:three_prime_utr;Parent=Msa0991730-mRNA-1
Gene Sequence

>Msa0991730

ATGGCTCCTTCGCCAGCTCCGGTGGAAAACAACGGAGAAACAACCACAACCACCGTTGCAACACCCACCCTTGAGTCTCAGAGATCTATTCCTACACCGTTTCTGACAAAAACATATAACCTCGTCGATGATAAATCTATCGACGAGGTTATTTCGTGGAACGAAGATGGATCCACGTTTATTGTTTGGAACCCCACCATCTTTGCTAGTAATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGACCGGTGGGAATTTTCAAATGAGTATTTTAGAAGAGGAGAAAAACGTCTTCTATGTGAGATTCAAAGGAGGAAGATCTGTTCTCCAACACCTTCACCGTCGTCTGTGTCTGTTTCTGCTGCTGTAACAGCAGCAGAAACTACAACAGCGACGGTTGCAGTTCCTTCACCGGTACTGTTGACGGTAATACCAACGGCGATGCCGATGATTTCACCGTCAAACTCCGGTGAAGAACAGGTGATATCATCGAGTTCTTCACCGGCACGTGCACCGGCCGAGCTTCTCGACGAAAACGAGAGGTTGAGGAAAGAGAACTCTCTATTGAATAAAGAACTTGCTGAGATGAGATTGCTTTGTAACAATATATACTCTCTGATGTCAAATTTTGCAAACAATAACACTCAAACAGACGGTGGTGCTCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAATCCAAATCCGCCGCTTGATTTGATGCCGGCGGTGGAAAAACGGAGCTCCGGCGAGGAAATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCAAAACGAGTTAGAGAAAACGGTTGTGAAAATGGTGAAAGAGAGGATGATACGTTGTTGCGGCTACATCAACCTGGTTCTACGGACGTGAAATCTGAACCGTTGGATTGTCAAGAACATGATAATGATCGAACAGCGTGGTTGAATCAGAGTCGTAGAAAGAATCAGAGTTTGTGTAAATGA
Protein sequence

>Msa0991730

MAPSPAPVENNGETTTTTVATPTLESQRSIPTPFLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTIFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKICSPTPSPSSVSVSAAVTAAETTTATVAVPSPVLLTVIPTAMPMISPSNSGEEQVISSSSSPARAPAELLDENERLRKENSLLNKELAEMRLLCNNIYSLMSNFANNNTQTDGGAQGSRESGMTAVNPNPPLDLMPAVEKRSSGEEMNPKLFGVAIGAKRVRENGCENGEREDDTLLRLHQPGSTDVKSEPLDCQEHDNDRTAWLNQSRRKNQSLCK*