AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052400 MtrunA17_Chr1g0152561 98.773 326 4 0 1 326 1 326 0.0 650
Msa0052400 MtrunA17_Chr3g0134761 75.710 317 70 4 16 326 5 320 2.54e-167 472
Msa0052400 MtrunA17_Chr1g0183781 53.008 266 124 1 61 326 440 704 9.07e-80 260
Msa0052400 MtrunA17_Chr2g0290151 52.632 266 126 0 61 326 175 440 2.79e-79 252
Msa0052400 MtrunA17_Chr3g0106931 54.887 266 119 1 61 326 553 817 8.41e-78 257
Msa0052400 MtrunA17_Chr7g0261371 51.128 266 129 1 61 326 514 778 1.25e-73 245
Msa0052400 MtrunA17_Chr4g0044411 48.120 266 138 0 61 326 373 638 4.58e-69 230
Msa0052400 MtrunA17_Chr4g0031431 42.384 302 166 2 61 357 353 651 1.03e-64 219
Msa0052400 MtrunA17_Chr7g0248251 40.647 278 164 1 54 331 361 637 4.40e-59 203
Msa0052400 MtrunA17_Chr7g0237931 42.066 271 151 2 56 326 333 597 6.95e-58 199
Msa0052400 MtrunA17_Chr1g0199321 44.361 266 148 0 61 326 345 610 8.50e-58 199
Msa0052400 MtrunA17_Chr5g0437411 41.544 272 146 5 64 326 408 675 6.55e-48 173
Msa0052400 MtrunA17_Chr7g0275081 38.043 276 159 6 68 333 176 449 1.39e-36 139
Msa0052400 MtrunA17_Chr7g0234671 34.559 272 167 7 70 333 180 448 8.51e-34 131
Msa0052400 MtrunA17_Chr5g0429231 35.055 271 171 4 61 326 34 304 8.95e-34 129
Msa0052400 MtrunA17_Chr2g0284461 37.918 269 159 6 64 326 399 665 1.06e-32 130
Msa0052400 MtrunA17_Chr5g0435041 33.574 277 177 5 55 326 14 288 7.25e-27 110
Msa0052400 MtrunA17_Chr3g0118001 28.571 266 185 2 64 326 214 477 1.15e-25 108
Msa0052400 MtrunA17_Chr8g0377151 29.870 308 194 9 30 326 404 700 9.61e-23 100
Msa0052400 MtrunA17_Chr3g0137061 30.216 278 180 6 61 326 110 385 1.24e-22 99.8
Msa0052400 MtrunA17_Chr4g0059201 28.443 334 220 10 7 331 376 699 2.34e-22 99.8
Msa0052400 MtrunA17_Chr1g0189811 34.307 274 169 6 63 326 156 428 1.05e-21 96.7
Msa0052400 MtrunA17_Chr1g0149941 29.137 278 180 9 63 326 175 449 3.90e-19 89.7
Msa0052400 MtrunA17_Chr3g0122721 32.283 254 160 8 82 326 448 698 6.37e-19 89.4
Msa0052400 MtrunA17_Chr3g0111451 33.210 271 174 5 61 326 41 309 7.38e-19 87.8
Msa0052400 MtrunA17_Chr8g0350681 29.130 230 151 6 101 325 238 460 2.80e-18 87.0
Msa0052400 MtrunA17_Chr6g0451581 25.188 266 194 2 64 326 241 504 4.27e-18 86.3
Msa0052400 MtrunA17_Chr3g0117851 30.515 272 144 9 74 336 390 625 6.77e-18 85.9
Msa0052400 MtrunA17_Chr4g0048811 31.925 213 134 7 135 343 121 326 5.25e-17 81.6
Msa0052400 MtrunA17_Chr6g0449461 29.478 268 141 6 64 324 44 270 2.19e-16 79.7
Msa0052400 MtrunA17_Chr4g0013091 31.271 291 170 10 72 342 429 709 3.71e-15 77.4
Msa0052400 MtrunA17_Chr2g0280671 28.315 279 188 6 60 332 104 376 7.99e-15 75.5
Msa0052400 MtrunA17_Chr1g0205751 25.735 272 194 3 61 332 282 545 2.34e-14 75.1
Msa0052400 MtrunA17_Chr7g0259851 28.079 203 138 2 61 263 269 463 4.50e-14 74.3
Msa0052400 MtrunA17_Chr1g0199031 37.607 117 56 1 138 254 18 117 1.26e-13 67.4
Msa0052400 MtrunA17_Chr7g0246731 23.529 306 191 6 61 325 156 459 4.26e-13 70.9
Msa0052400 MtrunA17_Chr5g0394261 26.255 259 183 3 74 332 292 542 8.27e-13 70.1
Msa0052400 MtrunA17_Chr7g0215741 33.793 145 93 1 99 240 597 741 1.87e-11 66.2
Msa0052400 MtrunA17_Chr5g0413681 25.461 271 194 4 64 326 386 656 3.55e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052400 AT3G01400.1 77.419 341 69 3 5 339 10 348 0.0 526
Msa0052400 AT5G58680.1 73.209 321 81 3 5 322 6 324 2.27e-167 473
Msa0052400 AT2G23140.3 50.000 286 136 2 47 326 334 618 2.91e-81 262
Msa0052400 AT2G23140.5 50.000 286 136 2 47 326 334 618 2.91e-81 262
Msa0052400 AT2G23140.1 50.000 286 136 2 47 326 526 810 1.89e-79 261
Msa0052400 AT2G23140.2 50.000 286 136 2 47 326 523 807 1.90e-79 261
Msa0052400 AT2G23140.4 50.000 286 136 2 47 326 523 807 1.90e-79 261
Msa0052400 AT4G16490.1 51.866 268 127 1 61 326 185 452 1.72e-75 243
Msa0052400 AT5G67340.1 51.311 267 128 2 61 326 423 688 6.53e-75 247
Msa0052400 AT5G67340.2 51.311 267 128 2 61 326 423 688 6.53e-75 247
Msa0052400 AT3G54790.2 51.698 265 126 2 63 326 440 703 4.03e-74 245
Msa0052400 AT3G54790.3 51.698 265 126 2 63 326 476 739 1.54e-73 244
Msa0052400 AT3G54790.1 51.698 265 126 2 63 326 476 739 1.54e-73 244
Msa0052400 AT1G23030.1 46.014 276 146 2 54 326 324 599 7.15e-67 224
Msa0052400 AT1G71020.2 46.520 273 144 2 61 331 195 467 6.28e-65 215
Msa0052400 AT1G71020.1 46.520 273 144 2 61 331 343 615 1.03e-63 216
Msa0052400 AT3G46510.1 40.066 302 181 0 61 362 354 655 3.82e-63 215
Msa0052400 AT2G28830.1 44.403 268 147 2 61 326 285 552 2.81e-62 211
Msa0052400 AT3G54850.1 46.269 268 142 2 60 326 346 612 2.51e-56 196
Msa0052400 AT5G42340.1 41.026 273 161 0 59 331 379 651 3.66e-51 182
Msa0052400 AT3G07360.5 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.3 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.9 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.6 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.2 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.8 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.10 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.7 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.4 34.155 284 175 7 59 333 34 314 2.59e-34 130
Msa0052400 AT3G07360.1 34.155 284 175 7 59 333 169 449 3.56e-33 130
Msa0052400 AT1G29340.1 35.241 332 186 8 64 390 411 718 1.05e-28 119
Msa0052400 AT4G12710.1 34.155 284 177 7 68 342 55 337 1.62e-28 116
Msa0052400 AT3G03440.1 32.234 273 176 6 61 326 66 336 3.16e-25 107
Msa0052400 AT5G62560.1 29.455 275 187 4 63 332 238 510 4.57e-25 107
Msa0052400 AT5G40140.1 30.597 268 178 4 64 326 233 497 9.68e-24 103
Msa0052400 AT1G67530.2 32.576 264 168 6 71 326 436 697 1.77e-23 103
Msa0052400 AT1G67530.1 32.576 264 168 6 71 326 436 697 1.77e-23 103
Msa0052400 AT1G67530.4 32.576 264 168 6 71 326 436 697 1.77e-23 103
Msa0052400 AT5G14510.1 33.704 270 166 8 64 325 5 269 2.00e-22 97.4
Msa0052400 AT1G27910.1 30.345 290 186 7 51 326 407 694 1.48e-20 94.7
Msa0052400 AT5G18320.1 35.450 189 102 6 57 226 149 336 2.21e-20 93.2
Msa0052400 AT4G31890.3 31.538 260 163 8 79 326 163 419 7.77e-20 92.0
Msa0052400 AT4G31890.2 31.538 260 163 8 79 326 163 419 7.77e-20 92.0
Msa0052400 AT4G31890.1 31.538 260 163 8 79 326 163 419 7.77e-20 92.0
Msa0052400 AT1G24330.1 31.474 251 163 6 83 326 448 696 1.74e-19 91.3
Msa0052400 AT1G24330.2 31.474 251 163 6 83 326 448 696 1.74e-19 91.3
Msa0052400 AT4G21350.1 33.977 259 163 5 55 309 88 342 6.65e-19 88.2
Msa0052400 AT1G10560.1 32.258 217 140 5 64 274 393 608 2.56e-18 87.8
Msa0052400 AT3G47820.1 29.553 291 183 9 71 345 218 502 1.41e-17 85.1
Msa0052400 AT5G65200.1 27.305 282 186 5 64 341 229 495 6.51e-17 83.2
Msa0052400 AT2G25130.1 29.183 257 168 7 82 326 132 386 1.56e-16 81.6
Msa0052400 AT5G01830.1 36.076 158 98 3 72 226 380 537 6.43e-16 80.5
Msa0052400 AT1G60190.1 28.270 237 157 8 74 298 389 624 1.78e-15 79.0
Msa0052400 AT5G13060.1 25.941 239 155 3 61 292 311 534 1.26e-13 73.2
Msa0052400 AT5G50900.1 28.679 265 180 5 62 320 147 408 3.10e-13 71.6
Msa0052400 AT3G19380.1 27.863 262 171 7 72 318 121 379 3.69e-12 68.2
Msa0052400 AT1G01830.1 27.755 245 171 5 48 287 155 398 4.35e-12 68.2
Msa0052400 AT1G01830.3 27.755 245 171 5 48 287 155 398 4.35e-12 68.2
Msa0052400 AT1G01830.2 27.755 245 171 5 48 287 155 398 4.35e-12 68.2
Msa0052400 AT2G44900.1 33.103 145 94 1 99 240 608 752 1.73e-11 66.6
Msa0052400 AT2G44900.2 33.103 145 94 1 99 240 608 752 1.73e-11 66.6
Msa0052400 AT5G18330.1 27.778 270 169 8 57 306 142 405 7.22e-11 64.3
Msa0052400 AT3G60350.1 34.932 146 90 2 99 240 599 743 8.67e-11 64.7
Msa0052400 AT3G60350.2 34.932 146 90 2 99 240 599 743 8.67e-11 64.7

Find 141 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTATTGGTGAATCTTCT+AGG 0.217498 1_2:+6628316 Msa0052400:CDS
GAAGTAACTAACGAAATTAA+TGG 0.228085 1_2:-6627988 None:intergenic
ATCAGGTGCAATTCCGTTAT+TGG 0.234218 1_2:+6628303 Msa0052400:CDS
GTACGAAAGGAGAATTTATA+TGG 0.293964 1_2:-6627560 None:intergenic
GCCTAACGCAAACACCGATA+TGG 0.295749 1_2:+6627657 Msa0052400:exon
GGATGCTATGGTTGTGGTTC+GGG 0.316819 1_2:-6627620 None:intergenic
TGAAGGTGCCATTCCTCCTT+TGG 0.322339 1_2:+6628675 Msa0052400:CDS
TGTGGTTCGGGTTGGAGGTT+CGG 0.331102 1_2:-6627608 None:intergenic
TTTGCGTTAGGCTCGGAATT+AGG 0.335875 1_2:-6627646 None:intergenic
TTAGTTAGAGCGTTAAATTC+AGG 0.337381 1_2:+6628114 Msa0052400:CDS
CGGATGCTATGGTTGTGGTT+CGG 0.345665 1_2:-6627621 None:intergenic
GTTTGTAAATATCTTCTTAA+CGG 0.347824 1_2:+6632168 Msa0052400:three_prime_UTR
CATTCTGATGTTGTAGATCT+TGG 0.352419 1_2:-6632013 None:intergenic
GCGGCTTTGCTGAATTCGTT+AGG 0.352847 1_2:+6631109 Msa0052400:CDS
AGAAAAGAATAAAATGTTAC+TGG 0.354379 1_2:+6632287 Msa0052400:three_prime_UTR
TAGGGTTTGTGAAGTTTCTA+TGG 0.364953 1_2:+6631128 Msa0052400:CDS
TACATGTGTAACCAAGTCTT+GGG 0.375610 1_2:-6627516 None:intergenic
TTGGTTGAGATTGTGGAGGT+TGG 0.376021 1_2:+6628568 Msa0052400:CDS
CACCGTATTCTTGAAGTTGC+AGG 0.379035 1_2:-6628017 None:intergenic
GAAAGTGTTGGTTGAGTTGA+TGG 0.395341 1_2:+6628438 Msa0052400:CDS
ATCGAATATGGTGGATAAAT+CGG 0.413047 1_2:+6628471 Msa0052400:CDS
TTGAAGATGACGACAGAAAA+CGG 0.424083 1_2:+6631066 Msa0052400:CDS
CCTAACGCAAACACCGATAT+GGG 0.429577 1_2:+6627658 Msa0052400:exon
TTTCTGTTCTTCGATTGAAT+CGG 0.431111 1_2:-6627884 None:intergenic
TGCTCTCCTTCGTCTATCTC+AGG 0.438091 1_2:+6628167 Msa0052400:CDS
GAGAAGCTTTGTAAAGTTTG+TGG 0.438474 1_2:+6632190 Msa0052400:three_prime_UTR
CGAATCAAAATTGCTAAAGC+TGG 0.447290 1_2:+6627955 Msa0052400:CDS
AAAACGGGATGGAAGGAAAA+CGG 0.448505 1_2:+6631082 Msa0052400:CDS
TGGAGGAATACGCGGGAAGA+AGG 0.449541 1_2:+6628342 Msa0052400:CDS
AAAGAACTAATAGCTTCTTC+CGG 0.451795 1_2:+6628078 Msa0052400:CDS
AAACGGGATGGAAGGAAAAC+GGG 0.452666 1_2:+6631083 Msa0052400:CDS
CACAAATCGCGCCAAACAAA+AGG 0.454708 1_2:+6628717 Msa0052400:CDS
CGGCTTTGCTGAATTCGTTA+GGG 0.457131 1_2:+6631110 Msa0052400:CDS
AATCTCACACGTGCTTGTTA+AGG 0.458845 1_2:+6632077 Msa0052400:three_prime_UTR
AACTAACGGTTTAATAGCTC+CGG 0.461417 1_2:-6628097 None:intergenic
GCTATGGTTGTGGTTCGGGT+TGG 0.462253 1_2:-6627616 None:intergenic
ATGGTTGTGGTTCGGGTTGG+AGG 0.462367 1_2:-6627613 None:intergenic
TTGGTTGCTTTGACGCAGTC+CGG 0.462970 1_2:+6628694 Msa0052400:CDS
CGCAGGCGAGGAAGAGTCGT+CGG 0.463723 1_2:-6627810 None:intergenic
GGAGGCGAAGGTTGCGTTGG+TGG 0.465398 1_2:+6628525 Msa0052400:CDS
TTGTTTGGCGCGATTTGTGC+CGG 0.465975 1_2:-6628713 None:intergenic
TGGTCAAGAACACAATGAAT+TGG 0.466189 1_2:+6632111 Msa0052400:three_prime_UTR
GGAGAATTTATATGGGAGAG+AGG 0.472276 1_2:-6627552 None:intergenic
GAGTGTGTTGGTATCGGTGC+CGG 0.474240 1_2:+6628504 Msa0052400:CDS
TTGGTGAATCTTCTAGGAAG+TGG 0.474246 1_2:+6628322 Msa0052400:CDS
CCTAGAAGATTCACCAATAA+CGG 0.474649 1_2:-6628316 None:intergenic
GAGAATTTATATGGGAGAGA+GGG 0.475558 1_2:-6627551 None:intergenic
AAGATGAGAGCGGTGAAAGC+GGG 0.475585 1_2:+6628409 Msa0052400:CDS
GAAGAGAACAAGGCGGCGAT+TGG 0.476176 1_2:+6628277 Msa0052400:CDS
AAAGTGGTGGTGAGGAAGAG+AGG 0.478358 1_2:+6629543 Msa0052400:CDS
AAGGCGGCGATTGGAAGATC+AGG 0.482551 1_2:+6628286 Msa0052400:CDS
TGAAGATGACGACAGAAAAC+GGG 0.482613 1_2:+6631067 Msa0052400:CDS
ACCAACGCAACCTTCGCCTC+CGG 0.483680 1_2:-6628523 None:intergenic
TTACATGTGTAACCAAGTCT+TGG 0.485092 1_2:-6627517 None:intergenic
GGGTTGGAGGTTCGGAGCCA+CGG 0.489715 1_2:-6627600 None:intergenic
GCACCATAAAATAATTGCTA+GGG 0.490566 1_2:-6632046 None:intergenic
GTTAGGCTCGGAATTAGGTT+CGG 0.494072 1_2:-6627641 None:intergenic
GGAATTAGGTTCGGATGCTA+TGG 0.494583 1_2:-6627632 None:intergenic
GGTATCGGTGCCGGAGGCGA+AGG 0.495124 1_2:+6628513 Msa0052400:CDS
CCCATATCGGTGTTTGCGTT+AGG 0.498952 1_2:-6627658 None:intergenic
GGAAGTTGAATCGTCGTTGA+CGG 0.500946 1_2:-6627725 None:intergenic
ATCGGTGTTTGCGTTAGGCT+CGG 0.501002 1_2:-6627653 None:intergenic
GTAACTCTCTGTTCCCATAT+CGG 0.503292 1_2:-6627671 None:intergenic
AGGTTCGGATGCTATGGTTG+TGG 0.504070 1_2:-6627626 None:intergenic
AATTTCGTTAGTTACTTCAC+AGG 0.505937 1_2:+6627993 Msa0052400:CDS
GCAGGCGAGGAAGAGTCGTC+GGG 0.507232 1_2:-6627809 None:intergenic
GCCGGTGTTGGTTGAGATTG+TGG 0.507527 1_2:+6628561 Msa0052400:CDS
TAGCGCGGCGGTTCGATCCA+TGG 0.519060 1_2:+6628645 Msa0052400:CDS
CGGAGACAAGTTGACGGATG+AGG 0.526478 1_2:-6627852 None:intergenic
CGGGAAGAAGGACGCGTCTA+CGG 0.528830 1_2:+6628354 Msa0052400:CDS
GACTGCAACAGTGACAGATC+CGG 0.529495 1_2:+6627760 Msa0052400:CDS
CAAAGCAACCAAAGGAGGAA+TGG 0.530629 1_2:-6628683 None:intergenic
AGCACCATAAAATAATTGCT+AGG 0.531539 1_2:-6632047 None:intergenic
AACAGAGAGTTACACATACA+TGG 0.531557 1_2:+6627681 Msa0052400:CDS
AGAAGTGGTGGCGAATTCGC+CGG 0.533976 1_2:-6627779 None:intergenic
CGATCCATGGTGGCTCGTGA+AGG 0.535543 1_2:+6628658 Msa0052400:CDS
ATTGCTCGCAAAGAATAAAC+CGG 0.537284 1_2:+6627927 Msa0052400:CDS
GATTGAATCGGAGTGAAGAT+CGG 0.537748 1_2:-6627872 None:intergenic
AAGGTTGCGTTGGTGGAAGA+AGG 0.538669 1_2:+6628532 Msa0052400:CDS
GCCGGAGGCGAAGGTTGCGT+TGG 0.541900 1_2:+6628522 Msa0052400:CDS
AGTTTGTGGTGTAAATCATA+CGG 0.546547 1_2:+6632204 Msa0052400:three_prime_UTR
TGCGAGCAATCGAATTTCCA+TGG 0.550132 1_2:-6627914 None:intergenic
TACGAAAGGAGAATTTATAT+GGG 0.554574 1_2:-6627559 None:intergenic
GAAGATCGGAGACAAGTTGA+CGG 0.556676 1_2:-6627858 None:intergenic
GACCTGCAACTTCAAGAATA+CGG 0.556927 1_2:+6628015 Msa0052400:CDS
TCATCCTACACCCCAAGACT+TGG 0.561204 1_2:+6627505 None:intergenic
AGAAGGTGGTGTGCCGGTGT+TGG 0.561302 1_2:+6628549 Msa0052400:CDS
AGAACAGAAACAAGCTGCCA+TGG 0.562865 1_2:+6627897 Msa0052400:CDS
GAATTTAACGCTCTAACTAA+CGG 0.564280 1_2:-6628111 None:intergenic
GGTGGAAGAAGGTGGTGTGC+CGG 0.565802 1_2:+6628543 Msa0052400:CDS
TCGTCGGGAGGTAGAAGAAG+TGG 0.568427 1_2:-6627794 None:intergenic
ATGGAAATAACAGAAATGGA+TGG 0.573143 1_2:+6630981 Msa0052400:intron
AGAAACTAATTGAGCTTCTG+AGG 0.580867 1_2:+6631987 Msa0052400:CDS
AAGTGGTGGTGAGGAAGAGA+GGG 0.582060 1_2:+6629544 Msa0052400:CDS
TCCACAATCTCAACCAACAC+CGG 0.586132 1_2:-6628562 None:intergenic
GGAATTCGAAAGTGGTGGTG+AGG 0.588248 1_2:+6629535 Msa0052400:CDS
ACGACAGAAAACGGGATGGA+AGG 0.591792 1_2:+6631075 Msa0052400:CDS
GTATACTCTGTGTTCTGTGA+AGG 0.596489 1_2:+6628381 Msa0052400:CDS
GTAACCAAGTCTTGGGGTGT+AGG 0.598630 1_2:-6627509 None:intergenic
GTTGTGAGGGAATTCGAAAG+TGG 0.601499 1_2:+6629527 Msa0052400:CDS
CTAGGAAGTGGAGGAATACG+CGG 0.602566 1_2:+6628334 Msa0052400:CDS
GGATAATGTTGTTGTTGTGA+GGG 0.603402 1_2:+6629514 Msa0052400:intron
TAAGATGAGAGCGGTGAAAG+CGG 0.603828 1_2:+6628408 Msa0052400:CDS
GGTTGGATCGCAGAGACAGA+AGG 0.604932 1_2:+6628585 Msa0052400:CDS
GGCACCTTCACGAGCCACCA+TGG 0.605176 1_2:-6628662 None:intergenic
AGGATAATGTTGTTGTTGTG+AGG 0.605414 1_2:+6629513 Msa0052400:intron
TATTCTGTTACAGATTTGTG+AGG 0.606208 1_2:+6628621 Msa0052400:CDS
GTTGCGTTGGTGGAAGAAGG+TGG 0.609924 1_2:+6628535 Msa0052400:CDS
ATTACAGGTGGAAGAGAACA+AGG 0.611067 1_2:+6628267 Msa0052400:intron
AGTGTTGGTTGAGTTGATGG+CGG 0.612937 1_2:+6628441 Msa0052400:CDS
TGCGTCAAAGCAACCAAAGG+AGG 0.612998 1_2:-6628688 None:intergenic
ACTGTTGCAGTCACTGAAAG+CGG 0.614710 1_2:-6627749 None:intergenic
GGCGAGGAAGAGTCGTCGGG+AGG 0.616350 1_2:-6627806 None:intergenic
GTGAATCTTCTAGGAAGTGG+AGG 0.623068 1_2:+6628325 Msa0052400:CDS
AGATGAGAGCGGTGAAAGCG+GGG 0.626464 1_2:+6628410 Msa0052400:CDS
TAGACGAAGAAGTGTACGAA+AGG 0.629451 1_2:-6627573 None:intergenic
GACTGCGTCAAAGCAACCAA+AGG 0.631800 1_2:-6628691 None:intergenic
AGCGGGGATAATGAAAGTGT+TGG 0.635236 1_2:+6628426 Msa0052400:CDS
TAGGAAGTGGAGGAATACGC+GGG 0.637423 1_2:+6628335 Msa0052400:CDS
ATGGAAGGAAAACGGGACGG+CGG 0.639170 1_2:+6631090 Msa0052400:CDS
TGTGTTGGTATCGGTGCCGG+AGG 0.656005 1_2:+6628507 Msa0052400:CDS
AAGTTGACGGATGAGGTCAT+CGG 0.659006 1_2:-6627845 None:intergenic
TCGGGAGGTAGAAGAAGTGG+TGG 0.663074 1_2:-6627791 None:intergenic
ACATGTGTAACCAAGTCTTG+GGG 0.663090 1_2:-6627515 None:intergenic
GCAGAGACAGAAGGAAATTG+CGG 0.663880 1_2:+6628594 Msa0052400:CDS
GTGAGGGAATTCGAAAGTGG+TGG 0.668042 1_2:+6629530 Msa0052400:CDS
ACAGAGAGTTACACATACAT+GGG 0.672322 1_2:+6627682 Msa0052400:CDS
GATGACGACAGAAAACGGGA+TGG 0.677843 1_2:+6631071 Msa0052400:CDS
TAATAACCTGAGATAGACGA+AGG 0.681280 1_2:-6628173 None:intergenic
ACAGATTTGTGAGGATAGCG+CGG 0.684005 1_2:+6628630 Msa0052400:CDS
GTTGCAGTCACTGAAAGCGG+AGG 0.687507 1_2:-6627746 None:intergenic
CGCGGCGGTTCGATCCATGG+TGG 0.687911 1_2:+6628648 Msa0052400:CDS
CAAAGAGAGATTCAAAATCG+CGG 0.688714 1_2:-6628043 None:intergenic
GGTGTTGGTTGAGATTGTGG+AGG 0.688844 1_2:+6628564 Msa0052400:CDS
GGGATGGAAGGAAAACGGGA+CGG 0.698706 1_2:+6631087 Msa0052400:CDS
GAAGGAGAATAAGATGAGAG+CGG 0.703303 1_2:+6628399 Msa0052400:CDS
GAGACAGAAGGAAATTGCGG+CGG 0.714686 1_2:+6628597 Msa0052400:CDS
TTGTTAAGGTGTAAACATCG+TGG 0.748984 1_2:+6632091 Msa0052400:three_prime_UTR
ACTTCTTCGTCTACACACCG+TGG 0.760862 1_2:+6627583 Msa0052400:five_prime_UTR
GATTTGTGAGGATAGCGCGG+CGG 0.801712 1_2:+6628633 Msa0052400:CDS
ACAGGTGGAAGAGAACAAGG+CGG 0.815311 1_2:+6628270 Msa0052400:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTAAATATTAAATGA+AGG + chr1_2:6630271-6630290 Msa0052400:intron 10.0%
!! TAGTTTAAATATTAAATGAA+GGG + chr1_2:6630272-6630291 Msa0052400:intron 10.0%
!! TATTAAAGCAAAATAAAAAA+TGG + chr1_2:6630962-6630981 Msa0052400:intron 10.0%
!! TAATAAATTAATAATAATGC+AGG - chr1_2:6631728-6631747 None:intergenic 10.0%
!!! GGACTTTTTTTTTTTTTTTT+TGG + chr1_2:6629809-6629828 Msa0052400:intron 15.0%
!! ATTAATTAACTAGATATCAA+TGG + chr1_2:6630115-6630134 Msa0052400:intron 15.0%
!! AAAAATAAAAAAAACAGGTA+AGG - chr1_2:6630620-6630639 None:intergenic 15.0%
!!! TTTTTTTTATACAGTTCTTA+AGG - chr1_2:6630679-6630698 None:intergenic 15.0%
!! ATATTTGTAGTATGTATTAA+AGG - chr1_2:6630867-6630886 None:intergenic 15.0%
!!! TAATAATGTTTTTCTGTTTT+TGG + chr1_2:6631951-6631970 Msa0052400:intron 15.0%
!!! TTGATTATTGTAAGTTCTAA+CGG + chr1_2:6628239-6628258 Msa0052400:intron 20.0%
!!! ATAATATTCTACCTTTTGTT+TGG - chr1_2:6628731-6628750 None:intergenic 20.0%
!! AAATTGCTCAAAAAAAACTA+GGG - chr1_2:6629886-6629905 None:intergenic 20.0%
!! AAAATTGCTCAAAAAAAACT+AGG - chr1_2:6629885-6629904 None:intergenic 20.0%
!!! TGATTTAGAATCTAATTTCT+AGG - chr1_2:6629194-6629213 None:intergenic 20.0%
!! ACAGTATTCAATTGAAATAA+TGG + chr1_2:6629440-6629459 Msa0052400:intron 20.0%
!!! TTTTTTTTTTTTGGTGAACA+TGG + chr1_2:6629818-6629837 Msa0052400:intron 20.0%
!!! TTTTTTTTTTTGGTGAACAT+GGG + chr1_2:6629819-6629838 Msa0052400:intron 20.0%
!!! GGACTTTAAAATCAAAAAAA+GGG + chr1_2:6629847-6629866 Msa0052400:intron 20.0%
!!! TAGTTTTTTTTGAGCAATTT+TGG - chr1_2:6628976-6628995 None:intergenic 20.0%
!! AAATTGCTCAAAAAAAACTA+AGG + chr1_2:6629886-6629905 Msa0052400:intron 20.0%
!! AATTGCTCAAAAAAAACTAA+GGG + chr1_2:6629887-6629906 Msa0052400:intron 20.0%
!! CATTTAAGCCTTTAAATTAT+TGG + chr1_2:6629952-6629971 Msa0052400:intron 20.0%
!! AATTTGAGCCAATAATTTAA+AGG - chr1_2:6629963-6629982 None:intergenic 20.0%
!!! AAAAGAAGAGTTTTGATTTA+GGG - chr1_2:6630047-6630066 None:intergenic 20.0%
!!! AAGAAAATGTTTCCATTTTT+GGG - chr1_2:6630336-6630355 None:intergenic 20.0%
!!! TAAGAAAATGTTTCCATTTT+TGG - chr1_2:6630337-6630356 None:intergenic 20.0%
!! AATAAAACCTTATGAACAAT+AGG + chr1_2:6630733-6630752 Msa0052400:intron 20.0%
!!! TTTTAATCCTATTGTTCATA+AGG - chr1_2:6630743-6630762 None:intergenic 20.0%
!!! ATTTATTTTCACAAGCTATT+GGG - chr1_2:6630772-6630791 None:intergenic 20.0%
!!! TATTTATTTTCACAAGCTAT+TGG - chr1_2:6630773-6630792 None:intergenic 20.0%
!! AAAAATGGAAATAACAGAAA+TGG + chr1_2:6630977-6630996 Msa0052400:intron 20.0%
!! CATGAAATGATTTATATTGT+TGG + chr1_2:6631214-6631233 Msa0052400:intron 20.0%
!! AATGATTTATATTGTTGGAT+TGG + chr1_2:6631219-6631238 Msa0052400:intron 20.0%
!! ATGATTTATATTGTTGGATT+GGG + chr1_2:6631220-6631239 Msa0052400:intron 20.0%
!! TCTTGAATATTCTTATTGAA+TGG + chr1_2:6631779-6631798 Msa0052400:intron 20.0%
!! CTTGAATATTCTTATTGAAT+GGG + chr1_2:6631780-6631799 Msa0052400:intron 20.0%
!! GTTTGTAAATATCTTCTTAA+CGG + chr1_2:6632168-6632187 Msa0052400:three_prime_UTR 20.0%
!! AGAAAAGAATAAAATGTTAC+TGG + chr1_2:6632287-6632306 Msa0052400:three_prime_UTR 20.0%
! TACGAAAGGAGAATTTATAT+GGG - chr1_2:6627562-6627581 None:intergenic 25.0%
! GAAGTAACTAACGAAATTAA+TGG - chr1_2:6627991-6628010 None:intergenic 25.0%
! GATGTAATAGTTAGTTATAC+CGG + chr1_2:6628196-6628215 Msa0052400:intron 25.0%
! GACAACAACTAATAATTAAC+CGG - chr1_2:6628218-6628237 None:intergenic 25.0%
!!! TCCTGAATTTTGTTTTTACT+CGG + chr1_2:6628879-6628898 Msa0052400:intron 25.0%
! AATTGCTCAAAAAAAACTAG+GGG - chr1_2:6628975-6628994 None:intergenic 25.0%
! AATCAAAAAAGGGTAAATGT+GGG - chr1_2:6629005-6629024 None:intergenic 25.0%
! AAATCAAAAAAGGGTAAATG+TGG - chr1_2:6629006-6629025 None:intergenic 25.0%
!!! GGGACTTTAAAATCAAAAAA+GGG - chr1_2:6629846-6629865 None:intergenic 25.0%
! AAAAAATTATCAGGTGTGAA+AGG - chr1_2:6629088-6629107 None:intergenic 25.0%
! TGAAAAGGGAAAAAATTATC+AGG - chr1_2:6629097-6629116 None:intergenic 25.0%
! AACAGTTCCTAAGAAATTAT+GGG - chr1_2:6629292-6629311 None:intergenic 25.0%
!!! GGGACTTTAAAATCAAAAAA+AGG + chr1_2:6629846-6629865 Msa0052400:intron 25.0%
! AATCAAAAAAAGGGTAAATG+TGG + chr1_2:6629856-6629875 Msa0052400:intron 25.0%
! ATCAAAAAAAGGGTAAATGT+GGG + chr1_2:6629857-6629876 Msa0052400:intron 25.0%
! ATTGCTCAAAAAAAACTAAG+GGG + chr1_2:6629888-6629907 Msa0052400:intron 25.0%
!! GTTTTCTAATTGTGCAATTT+TGG - chr1_2:6629915-6629934 None:intergenic 25.0%
! AATTGCACAATTAGAAAACT+TGG + chr1_2:6629916-6629935 Msa0052400:intron 25.0%
! ATTGCACAATTAGAAAACTT+GGG + chr1_2:6629917-6629936 Msa0052400:intron 25.0%
!!! GAAAAGAAGAGTTTTGATTT+AGG - chr1_2:6630048-6630067 None:intergenic 25.0%
! AATAAAAAAAACAGGTAAGG+CGG - chr1_2:6630617-6630636 None:intergenic 25.0%
!!! TGCTGGTTTATGTATTTATT+TGG - chr1_2:6630909-6630928 None:intergenic 25.0%
!!! GTGAAAGTATTTCTTTTTGT+TGG + chr1_2:6631179-6631198 Msa0052400:intron 25.0%
!! AAGTATTTCTTTTTGTTGGA+TGG + chr1_2:6631183-6631202 Msa0052400:intron 25.0%
!! AGTATTTCTTTTTGTTGGAT+GGG + chr1_2:6631184-6631203 Msa0052400:intron 25.0%
!!! CTTCAGGAGTATTTTTATAT+TGG + chr1_2:6631292-6631311 Msa0052400:intron 25.0%
! TAAAAAGCCCTGAAAAAATT+CGG + chr1_2:6631384-6631403 Msa0052400:intron 25.0%
! CAAGCTGAATAATTCTTTAA+GGG - chr1_2:6631516-6631535 None:intergenic 25.0%
! TCAAGCTGAATAATTCTTTA+AGG - chr1_2:6631517-6631536 None:intergenic 25.0%
! TTAGACACAATTAGACAATA+GGG - chr1_2:6631672-6631691 None:intergenic 25.0%
! ATTAGACACAATTAGACAAT+AGG - chr1_2:6631673-6631692 None:intergenic 25.0%
! TTTAAGAACTATTTATGTCG+TGG + chr1_2:6631814-6631833 Msa0052400:intron 25.0%
!!! TAATGTTTTTCTGTTTTTGG+TGG + chr1_2:6631954-6631973 Msa0052400:intron 25.0%
!!! AATGTTTTTCTGTTTTTGGT+GGG + chr1_2:6631955-6631974 Msa0052400:intron 25.0%
!!! AAACCCTAGCAATTATTTTA+TGG + chr1_2:6632043-6632062 Msa0052400:three_prime_UTR 25.0%
!!! TTGAGTTTTGTTTGCTTTTT+TGG + chr1_2:6632228-6632247 Msa0052400:three_prime_UTR 25.0%
GTACGAAAGGAGAATTTATA+TGG - chr1_2:6627563-6627582 None:intergenic 30.0%
TTTCTGTTCTTCGATTGAAT+CGG - chr1_2:6627887-6627906 None:intergenic 30.0%
!!! GCAATTTTGATTCGATTTTC+CGG - chr1_2:6627949-6627968 None:intergenic 30.0%
AATTTCGTTAGTTACTTCAC+AGG + chr1_2:6627993-6628012 Msa0052400:CDS 30.0%
AAAGAACTAATAGCTTCTTC+CGG + chr1_2:6628078-6628097 Msa0052400:CDS 30.0%
GAATTTAACGCTCTAACTAA+CGG - chr1_2:6628114-6628133 None:intergenic 30.0%
! TTAGTTAGAGCGTTAAATTC+AGG + chr1_2:6628114-6628133 Msa0052400:CDS 30.0%
!! ATCGAATATGGTGGATAAAT+CGG + chr1_2:6628471-6628490 Msa0052400:CDS 30.0%
TATTCTGTTACAGATTTGTG+AGG + chr1_2:6628621-6628640 Msa0052400:CDS 30.0%
AATTGCACAGTTAGAAAACT+TGG - chr1_2:6628946-6628965 None:intergenic 30.0%
! GTTTTCTAACTGTGCAATTT+TGG + chr1_2:6628947-6628966 Msa0052400:intron 30.0%
ATTGCTCAAAAAAAACTAGG+GGG - chr1_2:6628974-6628993 None:intergenic 30.0%
ATCAAAAAAGGGTAAATGTG+GGG - chr1_2:6629004-6629023 None:intergenic 30.0%
!! GGGGACTTTAAAATCAAAAA+AGG - chr1_2:6629845-6629864 None:intergenic 30.0%
! CTAATTTCTAGGTTTGTGTT+TGG - chr1_2:6629183-6629202 None:intergenic 30.0%
GAACAGTTCCTAAGAAATTA+TGG - chr1_2:6629293-6629312 None:intergenic 30.0%
GAATCAAAGTCATCTTCATT+AGG - chr1_2:6629414-6629433 None:intergenic 30.0%
!! AGAAATAAAGAGGTGTTCAA+CGG + chr1_2:6629661-6629680 Msa0052400:intron 30.0%
ATGAAAGAGGGAAAATTATC+AGG + chr1_2:6629726-6629745 Msa0052400:intron 30.0%
TCAAAAAAAGGGTAAATGTG+GGG + chr1_2:6629858-6629877 Msa0052400:intron 30.0%
TTGCACAATTAGAAAACTTG+GGG + chr1_2:6629918-6629937 Msa0052400:intron 30.0%
TAAAAAGCCCGGTTTAAATA+TGG + chr1_2:6630533-6630552 Msa0052400:intron 30.0%
AAAAAGCCCGGTTTAAATAT+GGG + chr1_2:6630534-6630553 Msa0052400:intron 30.0%
! TTTTCAGCCCATATTTAAAC+CGG - chr1_2:6630544-6630563 None:intergenic 30.0%
ATAAAAAAAACAGGTAAGGC+GGG - chr1_2:6630616-6630635 None:intergenic 30.0%
ATGGAAATAACAGAAATGGA+TGG + chr1_2:6630981-6631000 Msa0052400:intron 30.0%
!!! CAGGAGTATTTTTATATTGG+CGG + chr1_2:6631295-6631314 Msa0052400:intron 30.0%
!!! AGGAGTATTTTTATATTGGC+GGG + chr1_2:6631296-6631315 Msa0052400:intron 30.0%
AAAAAGCCCTGAAAAAATTC+GGG + chr1_2:6631385-6631404 Msa0052400:intron 30.0%
TTCATTATTGTCCAAACATG+TGG - chr1_2:6631887-6631906 None:intergenic 30.0%
GCACCATAAAATAATTGCTA+GGG - chr1_2:6632049-6632068 None:intergenic 30.0%
AGCACCATAAAATAATTGCT+AGG - chr1_2:6632050-6632069 None:intergenic 30.0%
AGTTTGTGGTGTAAATCATA+CGG + chr1_2:6632204-6632223 Msa0052400:three_prime_UTR 30.0%
TACATGTGTAACCAAGTCTT+GGG - chr1_2:6627519-6627538 None:intergenic 35.0%
TTACATGTGTAACCAAGTCT+TGG - chr1_2:6627520-6627539 None:intergenic 35.0%
GAGAATTTATATGGGAGAGA+GGG - chr1_2:6627554-6627573 None:intergenic 35.0%
AACAGAGAGTTACACATACA+TGG + chr1_2:6627681-6627700 Msa0052400:CDS 35.0%
ACAGAGAGTTACACATACAT+GGG + chr1_2:6627682-6627701 Msa0052400:CDS 35.0%
ATTGCTCGCAAAGAATAAAC+CGG + chr1_2:6627927-6627946 Msa0052400:CDS 35.0%
CGAATCAAAATTGCTAAAGC+TGG + chr1_2:6627955-6627974 Msa0052400:CDS 35.0%
CAAAGAGAGATTCAAAATCG+CGG - chr1_2:6628046-6628065 None:intergenic 35.0%
AACTAACGGTTTAATAGCTC+CGG - chr1_2:6628100-6628119 None:intergenic 35.0%
TAATAACCTGAGATAGACGA+AGG - chr1_2:6628176-6628195 None:intergenic 35.0%
GTTCTAACGGTAATGATTAC+AGG + chr1_2:6628252-6628271 Msa0052400:intron 35.0%
CCTAGAAGATTCACCAATAA+CGG - chr1_2:6628319-6628338 None:intergenic 35.0%
! GGATTTTGAATCGAATATGG+TGG + chr1_2:6628462-6628481 Msa0052400:CDS 35.0%
!! TGTTTTGAGTGTGTTGGTAT+CGG + chr1_2:6628498-6628517 Msa0052400:CDS 35.0%
GCCGAGTAAAAACAAAATTC+AGG - chr1_2:6628883-6628902 None:intergenic 35.0%
! CGGCTAGTTCGATTTAAATT+AGG + chr1_2:6628899-6628918 Msa0052400:intron 35.0%
TCAAAAAAGGGTAAATGTGG+GGG - chr1_2:6629003-6629022 None:intergenic 35.0%
AAACAAATCCAACCGCATAT+GGG - chr1_2:6629781-6629800 None:intergenic 35.0%
! ATTTCTAGGTTTGTGTTTGG+TGG - chr1_2:6629180-6629199 None:intergenic 35.0%
AGACTTGCCCATAATTTCTT+AGG + chr1_2:6629282-6629301 Msa0052400:intron 35.0%
GAAGTTGAATGTAGTGAATG+GGG - chr1_2:6629367-6629386 None:intergenic 35.0%
GGAAGTTGAATGTAGTGAAT+GGG - chr1_2:6629368-6629387 None:intergenic 35.0%
AGGAAGTTGAATGTAGTGAA+TGG - chr1_2:6629369-6629388 None:intergenic 35.0%
GAACACATTGAAACGTAAAG+AGG - chr1_2:6629389-6629408 None:intergenic 35.0%
TCAAAGTCATCTTCATTAGG+AGG - chr1_2:6629411-6629430 None:intergenic 35.0%
! AGGATAATGTTGTTGTTGTG+AGG + chr1_2:6629513-6629532 Msa0052400:intron 35.0%
! GGATAATGTTGTTGTTGTGA+GGG + chr1_2:6629514-6629533 Msa0052400:intron 35.0%
AGTTTGAATGAGGTTTATGG+TGG + chr1_2:6629575-6629594 Msa0052400:intron 35.0%
GTTTGAATGAGGTTTATGGT+GGG + chr1_2:6629576-6629595 Msa0052400:intron 35.0%
AAAGGGATGGAGAAATAAAG+AGG + chr1_2:6629651-6629670 Msa0052400:intron 35.0%
TGGAAGATAACAGATGAAAG+AGG + chr1_2:6629713-6629732 Msa0052400:intron 35.0%
GGAAGATAACAGATGAAAGA+GGG + chr1_2:6629714-6629733 Msa0052400:intron 35.0%
GGAAAATTATCAGGTGTGAA+AGG + chr1_2:6629735-6629754 Msa0052400:intron 35.0%
AAACAAATCCAACCGCATAT+GGG + chr1_2:6629781-6629800 Msa0052400:intron 35.0%
CAAAAAAAGGGTAAATGTGG+GGG + chr1_2:6629859-6629878 Msa0052400:intron 35.0%
TGCACAATTAGAAAACTTGG+GGG + chr1_2:6629919-6629938 Msa0052400:intron 35.0%
GGTTCGAATTCTTCATTGAT+TGG + chr1_2:6630136-6630155 Msa0052400:intron 35.0%
!! TCATGTTAACTTGTGTCCTT+AGG + chr1_2:6630295-6630314 Msa0052400:intron 35.0%
!! CATGTTAACTTGTGTCCTTA+GGG + chr1_2:6630296-6630315 Msa0052400:intron 35.0%
CATGTTAAGCAACCCAAAAA+TGG + chr1_2:6630321-6630340 Msa0052400:intron 35.0%
TTTCAGCCCATATTTAAACC+GGG - chr1_2:6630543-6630562 None:intergenic 35.0%
TTCAGCACTTTGTTCTTAAG+TGG - chr1_2:6630703-6630722 None:intergenic 35.0%
!! GAATTTGTTGCATCTGTTAG+TGG - chr1_2:6630812-6630831 None:intergenic 35.0%
AAAGATTCTGACTATGTTGC+TGG - chr1_2:6630926-6630945 None:intergenic 35.0%
GTCAGAATCTTTACGCAATT+TGG + chr1_2:6630934-6630953 Msa0052400:intron 35.0%
GAAAAACACGAGTTACAAGA+CGG + chr1_2:6631041-6631060 Msa0052400:CDS 35.0%
TTGAAGATGACGACAGAAAA+CGG + chr1_2:6631066-6631085 Msa0052400:CDS 35.0%
TAGGGTTTGTGAAGTTTCTA+TGG + chr1_2:6631128-6631147 Msa0052400:CDS 35.0%
! ATTTCTTTTTGTTGGATGGG+TGG + chr1_2:6631187-6631206 Msa0052400:intron 35.0%
! TTGGGCTAGAAAAGTGAAAT+TGG + chr1_2:6631238-6631257 Msa0052400:intron 35.0%
! TGGGCTAGAAAAGTGAAATT+GGG + chr1_2:6631239-6631258 Msa0052400:intron 35.0%
AAATTCGGGCTGCAATTATT+CGG + chr1_2:6631399-6631418 Msa0052400:intron 35.0%
GAAAGCCCGAATAAAATGTA+GGG - chr1_2:6631431-6631450 None:intergenic 35.0%
! CTACATTTTATTCGGGCTTT+CGG + chr1_2:6631430-6631449 Msa0052400:intron 35.0%
! TACATTTTATTCGGGCTTTC+GGG + chr1_2:6631431-6631450 Msa0052400:intron 35.0%
TCAAGTAGAGCTGTCAAAAT+GGG - chr1_2:6631475-6631494 None:intergenic 35.0%
TCTTCCACCAAAGCAATAAA+CGG - chr1_2:6631586-6631605 None:intergenic 35.0%
AGACAATAGGGCAAAAATTG+CGG - chr1_2:6631660-6631679 None:intergenic 35.0%
AGAAACTAATTGAGCTTCTG+AGG + chr1_2:6631987-6632006 Msa0052400:CDS 35.0%
CATTCTGATGTTGTAGATCT+TGG - chr1_2:6632016-6632035 None:intergenic 35.0%
TTGTTAAGGTGTAAACATCG+TGG + chr1_2:6632091-6632110 Msa0052400:three_prime_UTR 35.0%
TGGTCAAGAACACAATGAAT+TGG + chr1_2:6632111-6632130 Msa0052400:three_prime_UTR 35.0%
! GAGAAGCTTTGTAAAGTTTG+TGG + chr1_2:6632190-6632209 Msa0052400:three_prime_UTR 35.0%
ACATGTGTAACCAAGTCTTG+GGG - chr1_2:6627518-6627537 None:intergenic 40.0%
GGAGAATTTATATGGGAGAG+AGG - chr1_2:6627555-6627574 None:intergenic 40.0%
! TAGACGAAGAAGTGTACGAA+AGG - chr1_2:6627576-6627595 None:intergenic 40.0%
GTAACTCTCTGTTCCCATAT+CGG - chr1_2:6627674-6627693 None:intergenic 40.0%
GATTGAATCGGAGTGAAGAT+CGG - chr1_2:6627875-6627894 None:intergenic 40.0%
GACCTGCAACTTCAAGAATA+CGG + chr1_2:6628015-6628034 Msa0052400:CDS 40.0%
CTAACGGTAATGATTACAGG+TGG + chr1_2:6628255-6628274 Msa0052400:intron 40.0%
ATTACAGGTGGAAGAGAACA+AGG + chr1_2:6628267-6628286 Msa0052400:intron 40.0%
ATCAGGTGCAATTCCGTTAT+TGG + chr1_2:6628303-6628322 Msa0052400:CDS 40.0%
CCGTTATTGGTGAATCTTCT+AGG + chr1_2:6628316-6628335 Msa0052400:CDS 40.0%
! TTGGTGAATCTTCTAGGAAG+TGG + chr1_2:6628322-6628341 Msa0052400:CDS 40.0%
GTATACTCTGTGTTCTGTGA+AGG + chr1_2:6628381-6628400 Msa0052400:CDS 40.0%
GAAGGAGAATAAGATGAGAG+CGG + chr1_2:6628399-6628418 Msa0052400:CDS 40.0%
!! GAAAGTGTTGGTTGAGTTGA+TGG + chr1_2:6628438-6628457 Msa0052400:CDS 40.0%
!! GGCGGATTTTGAATCGAATA+TGG + chr1_2:6628459-6628478 Msa0052400:CDS 40.0%
!! GGCTTATGTTTTGAGTGTGT+TGG + chr1_2:6628492-6628511 Msa0052400:CDS 40.0%
TGCACAGTTAGAAAACTTGG+AGG - chr1_2:6628943-6628962 None:intergenic 40.0%
GAAACAAATCCAACCGCATA+TGG - chr1_2:6629043-6629062 None:intergenic 40.0%
! TGGTGGTAATGAGAAAGCAT+GGG - chr1_2:6629163-6629182 None:intergenic 40.0%
! TTGGTGGTAATGAGAAAGCA+TGG - chr1_2:6629164-6629183 None:intergenic 40.0%
TGCAATGAATCGAACACTCT+TGG - chr1_2:6629258-6629277 None:intergenic 40.0%
GGGAGTTTGAATGAGGTTTA+TGG + chr1_2:6629572-6629591 Msa0052400:intron 40.0%
TGGTGACAGGTTAACAATTG+CGG + chr1_2:6629602-6629621 Msa0052400:intron 40.0%
!! AAAGTACCGTTGAAGGAAGA+CGG + chr1_2:6629626-6629645 Msa0052400:intron 40.0%
CAAACAAATCCAACCGCATA+TGG + chr1_2:6629780-6629799 Msa0052400:intron 40.0%
!!! TTTTTTGGTGAACATGGGTG+TGG + chr1_2:6629824-6629843 Msa0052400:intron 40.0%
!! TTTTTGGTGAACATGGGTGT+GGG + chr1_2:6629825-6629844 Msa0052400:intron 40.0%
! TTTTGACAGCTCTACTCTCA+AGG - chr1_2:6630453-6630472 None:intergenic 40.0%
TGAGAGTAGAGCTGTCAAAA+CGG + chr1_2:6630453-6630472 Msa0052400:intron 40.0%
TGAAGATGACGACAGAAAAC+GGG + chr1_2:6631067-6631086 Msa0052400:CDS 40.0%
AAAACGGGATGGAAGGAAAA+CGG + chr1_2:6631082-6631101 Msa0052400:CDS 40.0%
!! GTATTTTTATATTGGCGGGC+TGG + chr1_2:6631300-6631319 Msa0052400:intron 40.0%
!!! TTTTTCAGGGCTTTTTAGCC+CGG - chr1_2:6631381-6631400 None:intergenic 40.0%
!!! TTGCAGCCCGAATTTTTTCA+GGG - chr1_2:6631394-6631413 None:intergenic 40.0%
!!! ATTGCAGCCCGAATTTTTTC+AGG - chr1_2:6631395-6631414 None:intergenic 40.0%
CGAAAGCCCGAATAAAATGT+AGG - chr1_2:6631432-6631451 None:intergenic 40.0%
CTCAAGTAGAGCTGTCAAAA+TGG - chr1_2:6631476-6631495 None:intergenic 40.0%
AATAGGGCAAAAATTGCGGT+GGG - chr1_2:6631656-6631675 None:intergenic 40.0%
TTTGTCGTATGAACGCAATG+AGG - chr1_2:6631705-6631724 None:intergenic 40.0%
CTATAGTAGTGCCACATGTT+TGG + chr1_2:6631873-6631892 Msa0052400:intron 40.0%
!!! TTTCTGTTTTTGGTGGGTTC+AGG + chr1_2:6631961-6631980 Msa0052400:intron 40.0%
! AATCTCACACGTGCTTGTTA+AGG + chr1_2:6632077-6632096 Msa0052400:three_prime_UTR 40.0%
GGAATTAGGTTCGGATGCTA+TGG - chr1_2:6627635-6627654 None:intergenic 45.0%
GTTAGGCTCGGAATTAGGTT+CGG - chr1_2:6627644-6627663 None:intergenic 45.0%
TTTGCGTTAGGCTCGGAATT+AGG - chr1_2:6627649-6627668 None:intergenic 45.0%
CCTAACGCAAACACCGATAT+GGG + chr1_2:6627658-6627677 Msa0052400:exon 45.0%
GGAAGTTGAATCGTCGTTGA+CGG - chr1_2:6627728-6627747 None:intergenic 45.0%
ACTGTTGCAGTCACTGAAAG+CGG - chr1_2:6627752-6627771 None:intergenic 45.0%
!!! ATCGGAATTTTCTGAAGCGC+AGG - chr1_2:6627830-6627849 None:intergenic 45.0%
! AAGTTGACGGATGAGGTCAT+CGG - chr1_2:6627848-6627867 None:intergenic 45.0%
! GAAGATCGGAGACAAGTTGA+CGG - chr1_2:6627861-6627880 None:intergenic 45.0%
AGAACAGAAACAAGCTGCCA+TGG + chr1_2:6627897-6627916 Msa0052400:CDS 45.0%
TGCGAGCAATCGAATTTCCA+TGG - chr1_2:6627917-6627936 None:intergenic 45.0%
CACCGTATTCTTGAAGTTGC+AGG - chr1_2:6628020-6628039 None:intergenic 45.0%
! GTGAATCTTCTAGGAAGTGG+AGG + chr1_2:6628325-6628344 Msa0052400:CDS 45.0%
TAAGATGAGAGCGGTGAAAG+CGG + chr1_2:6628408-6628427 Msa0052400:CDS 45.0%
! AGCGGGGATAATGAAAGTGT+TGG + chr1_2:6628426-6628445 Msa0052400:CDS 45.0%
!! AGTGTTGGTTGAGTTGATGG+CGG + chr1_2:6628441-6628460 Msa0052400:CDS 45.0%
TCCACAATCTCAACCAACAC+CGG - chr1_2:6628565-6628584 None:intergenic 45.0%
TTGGTTGAGATTGTGGAGGT+TGG + chr1_2:6628568-6628587 Msa0052400:CDS 45.0%
GCAGAGACAGAAGGAAATTG+CGG + chr1_2:6628594-6628613 Msa0052400:CDS 45.0%
ACAGATTTGTGAGGATAGCG+CGG + chr1_2:6628630-6628649 Msa0052400:CDS 45.0%
CAAAGCAACCAAAGGAGGAA+TGG - chr1_2:6628686-6628705 None:intergenic 45.0%
CACAAATCGCGCCAAACAAA+AGG + chr1_2:6628717-6628736 Msa0052400:CDS 45.0%
GGGGATGGAAGAGATGAAAA+GGG - chr1_2:6629111-6629130 None:intergenic 45.0%
TGGGGATGGAAGAGATGAAA+AGG - chr1_2:6629112-6629131 None:intergenic 45.0%
! TCATAGTGCTTGCTGAGATG+GGG - chr1_2:6629138-6629157 None:intergenic 45.0%
! GTCATAGTGCTTGCTGAGAT+GGG - chr1_2:6629139-6629158 None:intergenic 45.0%
! AGTCATAGTGCTTGCTGAGA+TGG - chr1_2:6629140-6629159 None:intergenic 45.0%
AGAAGAGGAAACGTAGAGAG+AGG - chr1_2:6629333-6629352 None:intergenic 45.0%
TACGTTTCCTCTTCTCCATG+TGG + chr1_2:6629338-6629357 Msa0052400:intron 45.0%
! ACTGCATGTGTTGTTGGATC+AGG + chr1_2:6629493-6629512 Msa0052400:intron 45.0%
GTTGTGAGGGAATTCGAAAG+TGG + chr1_2:6629527-6629546 Msa0052400:CDS 45.0%
GGTATGTGGGAGTTTGAATG+AGG + chr1_2:6629565-6629584 Msa0052400:intron 45.0%
!! ATGAGGTTTATGGTGGGTGA+TGG + chr1_2:6629582-6629601 Msa0052400:intron 45.0%
CTTTCACCGTCTTCCTTCAA+CGG - chr1_2:6629635-6629654 None:intergenic 45.0%
GTTGAAGGAAGACGGTGAAA+GGG + chr1_2:6629634-6629653 Msa0052400:intron 45.0%
! TTTTGGTGAACATGGGTGTG+GGG + chr1_2:6629826-6629845 Msa0052400:intron 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr1_2:6630314-6630333 None:intergenic 45.0%
GAGAGTAGAGCTGTCAAAAC+GGG + chr1_2:6630454-6630473 Msa0052400:intron 45.0%
!! TTAAACCGGGCTTTTTAGCC+CGG - chr1_2:6630530-6630549 None:intergenic 45.0%
AAACGGGATGGAAGGAAAAC+GGG + chr1_2:6631083-6631102 Msa0052400:CDS 45.0%
CGGCTTTGCTGAATTCGTTA+GGG + chr1_2:6631110-6631129 Msa0052400:CDS 45.0%
ATACTCCTGAAGCTGCTGTT+TGG - chr1_2:6631284-6631303 None:intergenic 45.0%
!!! TTTTTATATTGGCGGGCTGG+CGG + chr1_2:6631303-6631322 Msa0052400:intron 45.0%
CCGAATAAAATGTAGGGCCT+GGG - chr1_2:6631425-6631444 None:intergenic 45.0%
! CCCAGGCCCTACATTTTATT+CGG + chr1_2:6631422-6631441 Msa0052400:intron 45.0%
! CCAGGCCCTACATTTTATTC+GGG + chr1_2:6631423-6631442 Msa0052400:intron 45.0%
!! CATGGTGCCGTTTATTGCTT+TGG + chr1_2:6631576-6631595 Msa0052400:intron 45.0%
CAATAGGGCAAAAATTGCGG+TGG - chr1_2:6631657-6631676 None:intergenic 45.0%
! TGTCGTGGAAGCTTTTCATG+CGG + chr1_2:6631829-6631848 Msa0052400:intron 45.0%
!! ATTTAATATTTAAACTAAAA+TGG - chr1_2:6630269-6630288 None:intergenic 5.0%
!! ATAAAAAAAATAAAAAAAAC+AGG - chr1_2:6630625-6630644 None:intergenic 5.0%
GTAACCAAGTCTTGGGGTGT+AGG - chr1_2:6627512-6627531 None:intergenic 50.0%
ACTTCTTCGTCTACACACCG+TGG + chr1_2:6627583-6627602 Msa0052400:five_prime_UTR 50.0%
GGATGCTATGGTTGTGGTTC+GGG - chr1_2:6627623-6627642 None:intergenic 50.0%
CGGATGCTATGGTTGTGGTT+CGG - chr1_2:6627624-6627643 None:intergenic 50.0%
AGGTTCGGATGCTATGGTTG+TGG - chr1_2:6627629-6627648 None:intergenic 50.0%
! ATCGGTGTTTGCGTTAGGCT+CGG - chr1_2:6627656-6627675 None:intergenic 50.0%
GCCTAACGCAAACACCGATA+TGG + chr1_2:6627657-6627676 Msa0052400:exon 50.0%
! CCCATATCGGTGTTTGCGTT+AGG - chr1_2:6627661-6627680 None:intergenic 50.0%
GACTGCAACAGTGACAGATC+CGG + chr1_2:6627760-6627779 Msa0052400:CDS 50.0%
!!! AATTTTCTGAAGCGCAGGCG+AGG - chr1_2:6627825-6627844 None:intergenic 50.0%
TGCTCTCCTTCGTCTATCTC+AGG + chr1_2:6628167-6628186 Msa0052400:CDS 50.0%
ACAGGTGGAAGAGAACAAGG+CGG + chr1_2:6628270-6628289 Msa0052400:intron 50.0%
CTAGGAAGTGGAGGAATACG+CGG + chr1_2:6628334-6628353 Msa0052400:CDS 50.0%
TAGGAAGTGGAGGAATACGC+GGG + chr1_2:6628335-6628354 Msa0052400:CDS 50.0%
AAGATGAGAGCGGTGAAAGC+GGG + chr1_2:6628409-6628428 Msa0052400:CDS 50.0%
! AAGGTTGCGTTGGTGGAAGA+AGG + chr1_2:6628532-6628551 Msa0052400:CDS 50.0%
!! GGTGTTGGTTGAGATTGTGG+AGG + chr1_2:6628564-6628583 Msa0052400:CDS 50.0%
GAGACAGAAGGAAATTGCGG+CGG + chr1_2:6628597-6628616 Msa0052400:CDS 50.0%
!! TGAAGGTGCCATTCCTCCTT+TGG + chr1_2:6628675-6628694 Msa0052400:CDS 50.0%
TGCGTCAAAGCAACCAAAGG+AGG - chr1_2:6628691-6628710 None:intergenic 50.0%
GACTGCGTCAAAGCAACCAA+AGG - chr1_2:6628694-6628713 None:intergenic 50.0%
! TTGGTTGCTTTGACGCAGTC+CGG + chr1_2:6628694-6628713 Msa0052400:CDS 50.0%
TTGTTTGGCGCGATTTGTGC+CGG - chr1_2:6628716-6628735 None:intergenic 50.0%
AAAGTCCCCACACCCATATG+CGG + chr1_2:6629027-6629046 Msa0052400:intron 50.0%
ATCCAACCGCATATGGGTGT+GGG - chr1_2:6629787-6629806 None:intergenic 50.0%
AATCCAACCGCATATGGGTG+TGG - chr1_2:6629786-6629805 None:intergenic 50.0%
CTTGCTGAGATGGGGAATTG+GGG - chr1_2:6629130-6629149 None:intergenic 50.0%
! GCTTGCTGAGATGGGGAATT+GGG - chr1_2:6629131-6629150 None:intergenic 50.0%
! TGCTTGCTGAGATGGGGAAT+TGG - chr1_2:6629132-6629151 None:intergenic 50.0%
TAGTGAATGGGGAGACCACA+TGG - chr1_2:6629356-6629375 None:intergenic 50.0%
CCAACAACACATGCAGTCGA+AGG - chr1_2:6629490-6629509 None:intergenic 50.0%
CCTTCGACTGCATGTGTTGT+TGG + chr1_2:6629487-6629506 Msa0052400:intron 50.0%
GTGAGGGAATTCGAAAGTGG+TGG + chr1_2:6629530-6629549 Msa0052400:CDS 50.0%
! GGAATTCGAAAGTGGTGGTG+AGG + chr1_2:6629535-6629554 Msa0052400:CDS 50.0%
! AAAGTGGTGGTGAGGAAGAG+AGG + chr1_2:6629543-6629562 Msa0052400:CDS 50.0%
! AAGTGGTGGTGAGGAAGAGA+GGG + chr1_2:6629544-6629563 Msa0052400:CDS 50.0%
! GTGAGGAAGAGAGGGTATGT+GGG + chr1_2:6629552-6629571 Msa0052400:intron 50.0%
!! TTATGGTGGGTGATGGTGAC+AGG + chr1_2:6629589-6629608 Msa0052400:intron 50.0%
!! TTGCGGCAAAGTACCGTTGA+AGG + chr1_2:6629619-6629638 Msa0052400:intron 50.0%
CGTTGAAGGAAGACGGTGAA+AGG + chr1_2:6629633-6629652 Msa0052400:intron 50.0%
AAGGAAGACGGTGAAAGGGA+TGG + chr1_2:6629638-6629657 Msa0052400:intron 50.0%
GGAGTCAACTGTACGCTGAA+GGG + chr1_2:6629682-6629701 Msa0052400:intron 50.0%
TCAACTGTACGCTGAAGGGA+GGG + chr1_2:6629686-6629705 Msa0052400:intron 50.0%
AATCCAACCGCATATGGGTG+TGG + chr1_2:6629786-6629805 Msa0052400:intron 50.0%
ATCCAACCGCATATGGGTGT+GGG + chr1_2:6629787-6629806 Msa0052400:intron 50.0%
AAAGTCCCCACACCCATATG+CGG - chr1_2:6629027-6629046 None:intergenic 50.0%
TAAAAAGCCCGTTGCCCGTT+CGG - chr1_2:6630504-6630523 None:intergenic 50.0%
!! AACGGGCAACGGGCTTTTTA+GGG + chr1_2:6630504-6630523 Msa0052400:intron 50.0%
GAAAAAATAGAGCCCGAGCC+CGG + chr1_2:6630559-6630578 Msa0052400:intron 50.0%
AAAAAACAGGTAAGGCGGGC+TGG - chr1_2:6630612-6630631 None:intergenic 50.0%
GATGACGACAGAAAACGGGA+TGG + chr1_2:6631071-6631090 Msa0052400:CDS 50.0%
ACGACAGAAAACGGGATGGA+AGG + chr1_2:6631075-6631094 Msa0052400:CDS 50.0%
GCGGCTTTGCTGAATTCGTT+AGG + chr1_2:6631109-6631128 Msa0052400:CDS 50.0%
!! TTGGTCTTGTGTGGTGTGTG+TGG - chr1_2:6631265-6631284 None:intergenic 50.0%
!! AGCTGCTGTTTGGTCTTGTG+TGG - chr1_2:6631274-6631293 None:intergenic 50.0%
CAAGACCAAACAGCAGCTTC+AGG + chr1_2:6631276-6631295 Msa0052400:intron 50.0%
!!! TTTTATATTGGCGGGCTGGC+GGG + chr1_2:6631304-6631323 Msa0052400:intron 50.0%
AAAAAGCCCGTAGCCCGTTA+GGG - chr1_2:6631354-6631373 None:intergenic 50.0%
!!! TAACGGGCTACGGGCTTTTT+CGG + chr1_2:6631354-6631373 Msa0052400:intron 50.0%
CCCGAATAAAATGTAGGGCC+TGG - chr1_2:6631426-6631445 None:intergenic 50.0%
! TTTTATTCGGGCTTTCGGGC+CGG + chr1_2:6631435-6631454 Msa0052400:intron 50.0%
TAGAGCTGTCAAAATGGGCC+GGG - chr1_2:6631470-6631489 None:intergenic 50.0%
GTAGAGCTGTCAAAATGGGC+CGG - chr1_2:6631471-6631490 None:intergenic 50.0%
AGCATTGCTCCCTCAACTTG+CGG + chr1_2:6631541-6631560 Msa0052400:intron 50.0%
!! GGTGCCGTTTATTGCTTTGG+TGG + chr1_2:6631579-6631598 Msa0052400:intron 50.0%
GCAAGAACAATGAGTCGACG+TGG - chr1_2:6631619-6631638 None:intergenic 50.0%
!! TGTGGTTCGGGTTGGAGGTT+CGG - chr1_2:6627611-6627630 None:intergenic 55.0%
!! ATGGTTGTGGTTCGGGTTGG+AGG - chr1_2:6627616-6627635 None:intergenic 55.0%
! GCTATGGTTGTGGTTCGGGT+TGG - chr1_2:6627619-6627638 None:intergenic 55.0%
GTTGCAGTCACTGAAAGCGG+AGG - chr1_2:6627749-6627768 None:intergenic 55.0%
! AGAAGTGGTGGCGAATTCGC+CGG - chr1_2:6627782-6627801 None:intergenic 55.0%
TCGGGAGGTAGAAGAAGTGG+TGG - chr1_2:6627794-6627813 None:intergenic 55.0%
TCGTCGGGAGGTAGAAGAAG+TGG - chr1_2:6627797-6627816 None:intergenic 55.0%
! CGGAGACAAGTTGACGGATG+AGG - chr1_2:6627855-6627874 None:intergenic 55.0%
GAAGAGAACAAGGCGGCGAT+TGG + chr1_2:6628277-6628296 Msa0052400:CDS 55.0%
AAGGCGGCGATTGGAAGATC+AGG + chr1_2:6628286-6628305 Msa0052400:CDS 55.0%
TGGAGGAATACGCGGGAAGA+AGG + chr1_2:6628342-6628361 Msa0052400:CDS 55.0%
AGATGAGAGCGGTGAAAGCG+GGG + chr1_2:6628410-6628429 Msa0052400:CDS 55.0%
!! GAGTGTGTTGGTATCGGTGC+CGG + chr1_2:6628504-6628523 Msa0052400:CDS 55.0%
! GTTGCGTTGGTGGAAGAAGG+TGG + chr1_2:6628535-6628554 Msa0052400:CDS 55.0%
!! GCCGGTGTTGGTTGAGATTG+TGG + chr1_2:6628561-6628580 Msa0052400:CDS 55.0%
GGTTGGATCGCAGAGACAGA+AGG + chr1_2:6628585-6628604 Msa0052400:CDS 55.0%
GATTTGTGAGGATAGCGCGG+CGG + chr1_2:6628633-6628652 Msa0052400:CDS 55.0%
TCCAACCGCATATGGGTGTG+GGG - chr1_2:6629788-6629807 None:intergenic 55.0%
CTGAGATGGGGAATTGGGGA+TGG - chr1_2:6629126-6629145 None:intergenic 55.0%
! GGTGAGGAAGAGAGGGTATG+TGG + chr1_2:6629551-6629570 Msa0052400:intron 55.0%
CGGAGTCAACTGTACGCTGA+AGG + chr1_2:6629681-6629700 Msa0052400:intron 55.0%
GTCAACTGTACGCTGAAGGG+AGG + chr1_2:6629685-6629704 Msa0052400:intron 55.0%
TACGCTGAAGGGAGGGAGAA+TGG + chr1_2:6629693-6629712 Msa0052400:intron 55.0%
TCCAACCGCATATGGGTGTG+GGG + chr1_2:6629788-6629807 Msa0052400:intron 55.0%
AAAAAGCCCGTTGCCCGTTC+GGG - chr1_2:6630503-6630522 None:intergenic 55.0%
!! GAACGGGCAACGGGCTTTTT+AGG + chr1_2:6630503-6630522 Msa0052400:intron 55.0%
GGGATGGAAGGAAAACGGGA+CGG + chr1_2:6631087-6631106 Msa0052400:CDS 55.0%
ATGGAAGGAAAACGGGACGG+CGG + chr1_2:6631090-6631109 Msa0052400:CDS 55.0%
GAAAAAGCCCGTAGCCCGTT+AGG - chr1_2:6631355-6631374 None:intergenic 55.0%
!!! AACGGGCTACGGGCTTTTTC+GGG + chr1_2:6631355-6631374 Msa0052400:intron 55.0%
! CGTCAGCTACCGCAAGTTGA+GGG - chr1_2:6631553-6631572 None:intergenic 55.0%
ACGTCAGCTACCGCAAGTTG+AGG - chr1_2:6631554-6631573 None:intergenic 55.0%
TTGCGGTAGCTGACGTTGCA+TGG + chr1_2:6631558-6631577 Msa0052400:intron 55.0%
GCAAAAATTGCGGTGGGTGG+AGG - chr1_2:6631650-6631669 None:intergenic 55.0%
AGGGCAAAAATTGCGGTGGG+TGG - chr1_2:6631653-6631672 None:intergenic 55.0%
CGGGAAGAAGGACGCGTCTA+CGG + chr1_2:6628354-6628373 Msa0052400:CDS 60.0%
!! TGTGTTGGTATCGGTGCCGG+AGG + chr1_2:6628507-6628526 Msa0052400:CDS 60.0%
ACCAACGCAACCTTCGCCTC+CGG - chr1_2:6628526-6628545 None:intergenic 60.0%
GGTGGAAGAAGGTGGTGTGC+CGG + chr1_2:6628543-6628562 Msa0052400:CDS 60.0%
! AGAAGGTGGTGTGCCGGTGT+TGG + chr1_2:6628549-6628568 Msa0052400:CDS 60.0%
CGATCCATGGTGGCTCGTGA+AGG + chr1_2:6628658-6628677 Msa0052400:CDS 60.0%
TCCCCACACCCATATGCGGT+TGG + chr1_2:6629031-6629050 Msa0052400:intron 60.0%
GGGGAGACCACATGGAGAAG+AGG - chr1_2:6629348-6629367 None:intergenic 60.0%
TCCCCACACCCATATGCGGT+TGG - chr1_2:6629031-6629050 None:intergenic 60.0%
AGCTGTCAAAACGGGCAGCC+CGG + chr1_2:6630462-6630481 Msa0052400:intron 60.0%
!!! GGCAACGGGCTTTTTAGGGC+CGG + chr1_2:6630508-6630527 Msa0052400:intron 60.0%
!!! GCAACGGGCTTTTTAGGGCC+GGG + chr1_2:6630509-6630528 Msa0052400:intron 60.0%
TAGGGCCGGGCTAAAAAGCC+CGG + chr1_2:6630522-6630541 Msa0052400:intron 60.0%
TTAGCCCGGGAGCCCGTATA+GGG - chr1_2:6630585-6630604 None:intergenic 60.0%
TATACGGGCTCCCGGGCTAA+CGG + chr1_2:6630585-6630604 Msa0052400:intron 60.0%
GGGCTGCAATTATTCGGCCC+AGG + chr1_2:6631405-6631424 Msa0052400:intron 60.0%
TCAAAATGGGCCGGGCCGTA+CGG - chr1_2:6631462-6631481 None:intergenic 60.0%
GGGTTGGAGGTTCGGAGCCA+CGG - chr1_2:6627603-6627622 None:intergenic 65.0%
GCAGGCGAGGAAGAGTCGTC+GGG - chr1_2:6627812-6627831 None:intergenic 65.0%
CGCAGGCGAGGAAGAGTCGT+CGG - chr1_2:6627813-6627832 None:intergenic 65.0%
GGAGGCGAAGGTTGCGTTGG+TGG + chr1_2:6628525-6628544 Msa0052400:CDS 65.0%
TAGCGCGGCGGTTCGATCCA+TGG + chr1_2:6628645-6628664 Msa0052400:CDS 65.0%
GGCACCTTCACGAGCCACCA+TGG - chr1_2:6628665-6628684 None:intergenic 65.0%
GTTAGCCCGGGAGCCCGTAT+AGG - chr1_2:6630586-6630605 None:intergenic 65.0%
ATACGGGCTCCCGGGCTAAC+GGG + chr1_2:6630586-6630605 Msa0052400:intron 65.0%
!! TATATTGGCGGGCTGGCGGG+CGG + chr1_2:6631307-6631326 Msa0052400:intron 65.0%
!!! GGCTACGGGCTTTTTCGGGC+CGG + chr1_2:6631359-6631378 Msa0052400:intron 65.0%
!!! GCTACGGGCTTTTTCGGGCC+GGG + chr1_2:6631360-6631379 Msa0052400:intron 65.0%
CAAAATGGGCCGGGCCGTAC+GGG - chr1_2:6631461-6631480 None:intergenic 65.0%
GGCGAGGAAGAGTCGTCGGG+AGG - chr1_2:6627809-6627828 None:intergenic 70.0%
!! GGTATCGGTGCCGGAGGCGA+AGG + chr1_2:6628513-6628532 Msa0052400:CDS 70.0%
GCCGGAGGCGAAGGTTGCGT+TGG + chr1_2:6628522-6628541 Msa0052400:CDS 70.0%
CGCGGCGGTTCGATCCATGG+TGG + chr1_2:6628648-6628667 Msa0052400:CDS 70.0%
CGTTCGGGCCGGGCCTAAAC+GGG - chr1_2:6630488-6630507 None:intergenic 70.0%
CCGTTCGGGCCGGGCCTAAA+CGG - chr1_2:6630489-6630508 None:intergenic 70.0%
CCGTTTAGGCCCGGCCCGAA+CGG + chr1_2:6630486-6630505 Msa0052400:intron 70.0%
CGTTTAGGCCCGGCCCGAAC+GGG + chr1_2:6630487-6630506 Msa0052400:intron 70.0%
AGCCCGAGCCCGGCCCTATA+CGG + chr1_2:6630569-6630588 Msa0052400:intron 70.0%
AGCCCGTATAGGGCCGGGCT+CGG - chr1_2:6630575-6630594 None:intergenic 70.0%
AGCCCGTAGCCCGTTAGGGC+CGG - chr1_2:6631350-6631369 None:intergenic 70.0%
ACGGGCAGCCCGGCCCGTTT+AGG + chr1_2:6630472-6630491 Msa0052400:intron 75.0%
CAGCCCGGCCCGTTTAGGCC+CGG + chr1_2:6630477-6630496 Msa0052400:intron 75.0%
AGCCCGTTGCCCGTTCGGGC+CGG - chr1_2:6630499-6630518 None:intergenic 75.0%
GCCCGAGCCCGGCCCTATAC+GGG + chr1_2:6630570-6630589 Msa0052400:intron 75.0%
GCCCGTATAGGGCCGGGCTC+GGG - chr1_2:6630574-6630593 None:intergenic 75.0%
CCGGGAGCCCGTATAGGGCC+GGG - chr1_2:6630580-6630599 None:intergenic 75.0%
CCCGGCCCTATACGGGCTCC+CGG + chr1_2:6630577-6630596 Msa0052400:intron 75.0%
CCCGGGAGCCCGTATAGGGC+CGG - chr1_2:6630581-6630600 None:intergenic 75.0%
CCGGCCCTATACGGGCTCCC+GGG + chr1_2:6630578-6630597 Msa0052400:intron 75.0%
CCGTTAGGGCCGGCCCGTTC+GGG - chr1_2:6631340-6631359 None:intergenic 75.0%
CCCGAACGGGCCGGCCCTAA+CGG + chr1_2:6631337-6631356 Msa0052400:intron 75.0%
CCCGTTAGGGCCGGCCCGTT+CGG - chr1_2:6631341-6631360 None:intergenic 75.0%
CCGAACGGGCCGGCCCTAAC+GGG + chr1_2:6631338-6631357 Msa0052400:intron 75.0%
!! GGGCCGGCCCTAACGGGCTA+CGG + chr1_2:6631344-6631363 Msa0052400:intron 75.0%
!! GGCCGGCCCTAACGGGCTAC+GGG + chr1_2:6631345-6631364 Msa0052400:intron 75.0%
GGCTTTCGGGCCGGCCCGTA+CGG + chr1_2:6631444-6631463 Msa0052400:intron 75.0%
! GGGCCGGGCCTAAACGGGCC+GGG - chr1_2:6630483-6630502 None:intergenic 80.0%
! CGGGCCGGGCCTAAACGGGC+CGG - chr1_2:6630484-6630503 None:intergenic 80.0%
! GGCCCGGCCCGAACGGGCAA+CGG + chr1_2:6630493-6630512 Msa0052400:intron 80.0%
! GCCCGGCCCGAACGGGCAAC+GGG + chr1_2:6630494-6630513 Msa0052400:intron 80.0%
! GCCCGTTGCCCGTTCGGGCC+GGG - chr1_2:6630498-6630517 None:intergenic 80.0%
!!! GCGGGCTGGCCCGTTAGCCC+GGG - chr1_2:6630598-6630617 None:intergenic 80.0%
!!! GGCGGGCTGGCCCGTTAGCC+CGG - chr1_2:6630599-6630618 None:intergenic 80.0%
! CGGGCGGCCCGTAGCCCGAA+CGG + chr1_2:6631323-6631342 Msa0052400:intron 80.0%
! GGGCGGCCCGTAGCCCGAAC+GGG + chr1_2:6631324-6631343 Msa0052400:intron 80.0%
! GGCCCGTAGCCCGAACGGGC+CGG + chr1_2:6631328-6631347 Msa0052400:intron 80.0%
! GGCCGGCCCGTTCGGGCTAC+GGG - chr1_2:6631333-6631352 None:intergenic 80.0%
! GGGCCGGCCCGTTCGGGCTA+CGG - chr1_2:6631334-6631353 None:intergenic 80.0%
! ATGGGCCGGGCCGTACGGGC+CGG - chr1_2:6631457-6631476 None:intergenic 80.0%
! TCGGGCCGGCCCGTACGGCC+CGG + chr1_2:6631449-6631468 Msa0052400:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6627509 6632311 6627509 ID=Msa0052400;Name=Msa0052400
chr1_2 mRNA 6627509 6632311 6627509 ID=Msa0052400-mRNA-1;Parent=Msa0052400;Name=Msa0052400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=167|0.25|0.6|0.6|1|1|5|275|412
chr1_2 exon 6627509 6628188 6627509 ID=Msa0052400-mRNA-1:exon:2164;Parent=Msa0052400-mRNA-1
chr1_2 exon 6628274 6628738 6628274 ID=Msa0052400-mRNA-1:exon:2165;Parent=Msa0052400-mRNA-1
chr1_2 exon 6629515 6629565 6629515 ID=Msa0052400-mRNA-1:exon:2166;Parent=Msa0052400-mRNA-1
chr1_2 exon 6630994 6631149 6630994 ID=Msa0052400-mRNA-1:exon:2167;Parent=Msa0052400-mRNA-1
chr1_2 exon 6631983 6632311 6631983 ID=Msa0052400-mRNA-1:exon:2168;Parent=Msa0052400-mRNA-1
chr1_2 five_prime_UTR 6627509 6627675 6627509 ID=Msa0052400-mRNA-1:five_prime_utr;Parent=Msa0052400-mRNA-1
chr1_2 CDS 6627676 6628188 6627676 ID=Msa0052400-mRNA-1:cds;Parent=Msa0052400-mRNA-1
chr1_2 CDS 6628274 6628738 6628274 ID=Msa0052400-mRNA-1:cds;Parent=Msa0052400-mRNA-1
chr1_2 CDS 6629515 6629565 6629515 ID=Msa0052400-mRNA-1:cds;Parent=Msa0052400-mRNA-1
chr1_2 CDS 6630994 6631149 6630994 ID=Msa0052400-mRNA-1:cds;Parent=Msa0052400-mRNA-1
chr1_2 CDS 6631983 6632036 6631983 ID=Msa0052400-mRNA-1:cds;Parent=Msa0052400-mRNA-1
chr1_2 three_prime_UTR 6632037 6632311 6632037 ID=Msa0052400-mRNA-1:three_prime_utr;Parent=Msa0052400-mRNA-1
Gene Sequence

>Msa0052400

ATGGGAACAGAGAGTTACACATACATGGGACGAAGTTTCAAAGAATTCACCGTCAACGACGATTCAACTTCCTCCGCTTTCAGTGACTGCAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTACCTCCCGACGACTCTTCCTCGCCTGCGCTTCAGAAAATTCCGATGACCTCATCCGTCAACTTGTCTCCGATCTTCACTCCGATTCAATCGAAGAACAGAAACAAGCTGCCATGGAAATTCGATTGCTCGCAAAGAATAAACCGGAAAATCGAATCAAAATTGCTAAAGCTGGCGCGATTAAACCATTAATTTCGTTAGTTACTTCACAGGACCTGCAACTTCAAGAATACGGTGTTACCGCGATTTTGAATCTCTCTTTGTGTGACGAGAATAAAGAACTAATAGCTTCTTCCGGAGCTATTAAACCGTTAGTTAGAGCGTTAAATTCAGGAACATCAACAGCTAAAGAGAACGCTGCTTGTGCTCTCCTTCGTCTATCTCAGGTGGAAGAGAACAAGGCGGCGATTGGAAGATCAGGTGCAATTCCGTTATTGGTGAATCTTCTAGGAAGTGGAGGAATACGCGGGAAGAAGGACGCGTCTACGGCGCTGTATACTCTGTGTTCTGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCGGGGATAATGAAAGTGTTGGTTGAGTTGATGGCGGATTTTGAATCGAATATGGTGGATAAATCGGCTTATGTTTTGAGTGTGTTGGTATCGGTGCCGGAGGCGAAGGTTGCGTTGGTGGAAGAAGGTGGTGTGCCGGTGTTGGTTGAGATTGTGGAGGTTGGATCGCAGAGACAGAAGGAAATTGCGGCGGTTATTCTGTTACAGATTTGTGAGGATAGCGCGGCGGTTCGATCCATGGTGGCTCGTGAAGGTGCCATTCCTCCTTTGGTTGCTTTGACGCAGTCCGGCACAAATCGCGCCAAACAAAAGGATAATGTTGTTGTTGTGAGGGAATTCGAAAGTGGTGGTGAGGAAGAGAGGAAATGGATGGAAGAAGATGAGTCACAGAAGAATACGATTCACAGACAGAAAAACACGAGTTACAAGACGGCATTGAAGATGACGACAGAAAACGGGATGGAAGGAAAACGGGACGGCGGCTTTGCTGAATTCGTTAGGGTTTGTGAAGTTTCTATGGCTGAGAAACTAATTGAGCTTCTGAGGCAACCAAGATCTACAACATCAGAATGA
Protein sequence

>Msa0052400

MGTESYTYMGRSFKEFTVNDDSTSSAFSDCNSDRSGEFATTSSTSRRLFLACASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLVTSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCSVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVLSVLVSVPEAKVALVEEGGVPVLVEIVEVGSQRQKEIAAVILLQICEDSAAVRSMVAREGAIPPLVALTQSGTNRAKQKDNVVVVREFESGGEEERKWMEEDESQKNTIHRQKNTSYKTALKMTTENGMEGKRDGGFAEFVRVCEVSMAEKLIELLRQPRSTTSE*