Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997840 | XP_024641514.1 | 93.991 | 233 | 14 | 0 | 1 | 233 | 1 | 233 | 7.56e-118 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997840 | sp|F4JDJ0|HIP47_ARATH | 45.570 | 79 | 42 | 1 | 5 | 83 | 1 | 78 | 1.18e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997840 | B7FHF1 | 93.991 | 233 | 14 | 0 | 1 | 233 | 1 | 233 | 3.61e-118 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0997840 | 0.804772 | 1.839929e-49 | -8.615850e-47 |
| Msa0048950 | Msa0997840 | 0.807719 | 4.406048e-50 | -8.615850e-47 |
| Msa0102920 | Msa0997840 | 0.809483 | 1.850956e-50 | -8.615850e-47 |
| Msa0655430 | Msa0997840 | 0.821674 | 3.560776e-53 | -8.615850e-47 |
| Msa0684720 | Msa0997840 | 0.800631 | 1.316345e-48 | -8.615850e-47 |
| Msa0750790 | Msa0997840 | 0.801283 | 9.686781e-49 | -8.615850e-47 |
| Msa0147670 | Msa0997840 | 0.817061 | 4.007986e-52 | -8.615850e-47 |
| Msa0147680 | Msa0997840 | 0.815201 | 1.043826e-51 | -8.615850e-47 |
| Msa0210790 | Msa0997840 | 0.818929 | 1.516319e-52 | -8.615850e-47 |
| Msa0210850 | Msa0997840 | 0.808633 | 2.814131e-50 | -8.615850e-47 |
| Msa0223880 | Msa0997840 | 0.811015 | 8.648149e-51 | -8.615850e-47 |
| Msa0985700 | Msa0997840 | 0.807934 | 3.965429e-50 | -8.615850e-47 |
| Msa0997840 | Msa1061670 | 0.805723 | 1.163236e-49 | -8.615850e-47 |
| Msa0997840 | Msa1106960 | 0.802202 | 6.274531e-49 | -8.615850e-47 |
| Msa0997840 | Msa1109880 | 0.801306 | 9.580728e-49 | -8.615850e-47 |
| Msa0997840 | Msa1313720 | 0.809132 | 2.201034e-50 | -8.615850e-47 |
| Msa0997840 | Msa1357490 | 0.807197 | 5.686231e-50 | -8.615850e-47 |
| Msa0265060 | Msa0997840 | 0.809562 | 1.779231e-50 | -8.615850e-47 |
| Msa0327890 | Msa0997840 | 0.804311 | 2.295344e-49 | -8.615850e-47 |
| Msa0340650 | Msa0997840 | 0.805761 | 1.142077e-49 | -8.615850e-47 |
| Msa0350180 | Msa0997840 | 0.801847 | 7.421980e-49 | -8.615850e-47 |
| Msa0489370 | Msa0997840 | 0.807616 | 4.634585e-50 | -8.615850e-47 |
| Msa0602050 | Msa0997840 | 0.803241 | 3.829516e-49 | -8.615850e-47 |
| Msa0869660 | Msa0997840 | 0.844491 | 7.314572e-59 | -8.615850e-47 |
| Msa0883640 | Msa0997840 | 0.806426 | 8.273598e-50 | -8.615850e-47 |
| Msa0910830 | Msa0997840 | 0.811313 | 7.452614e-51 | -8.615850e-47 |
| Msa0935440 | Msa0997840 | 0.816142 | 6.441340e-52 | -8.615850e-47 |
| Msa0960090 | Msa0997840 | 0.809937 | 1.478200e-50 | -8.615850e-47 |
| Msa0972370 | Msa0997840 | 0.818198 | 2.221729e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997840 | MtrunA17_Chr6g0483561 | 93.991 | 233 | 14 | 0 | 1 | 233 | 1 | 233 | 6.95e-122 | 345 |
| Msa0997840 | MtrunA17_Chr6g0483581 | 95.708 | 233 | 10 | 0 | 1 | 233 | 1 | 233 | 5.70e-110 | 315 |
| Msa0997840 | MtrunA17_Chr6g0483521 | 67.227 | 238 | 58 | 8 | 1 | 233 | 1 | 223 | 2.56e-65 | 202 |
| Msa0997840 | MtrunA17_Chr6g0483511 | 60.766 | 209 | 53 | 5 | 1 | 208 | 1 | 181 | 1.38e-64 | 198 |
| Msa0997840 | MtrunA17_Chr5g0438551 | 51.087 | 92 | 42 | 2 | 3 | 91 | 2 | 93 | 5.65e-21 | 85.1 |
| Msa0997840 | MtrunA17_Chr2g0290831 | 50.667 | 75 | 37 | 0 | 1 | 75 | 1 | 75 | 1.18e-16 | 72.4 |
| Msa0997840 | MtrunA17_Chr3g0120551 | 42.667 | 75 | 43 | 0 | 2 | 76 | 3 | 77 | 5.97e-15 | 68.9 |
| Msa0997840 | MtrunA17_Chr3g0120541 | 42.353 | 85 | 46 | 1 | 2 | 86 | 3 | 84 | 9.09e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997840 | AT3G20180.3 | 48.193 | 83 | 42 | 1 | 1 | 83 | 1 | 82 | 2.24e-17 | 75.9 |
| Msa0997840 | AT3G20180.2 | 45.783 | 83 | 44 | 1 | 1 | 83 | 20 | 101 | 3.24e-16 | 73.2 |
| Msa0997840 | AT4G05030.2 | 45.946 | 74 | 40 | 0 | 1 | 74 | 1 | 74 | 2.37e-15 | 69.3 |
| Msa0997840 | AT3G20180.4 | 46.250 | 80 | 42 | 1 | 4 | 83 | 2 | 80 | 3.23e-15 | 70.1 |
| Msa0997840 | AT4G05030.1 | 46.479 | 71 | 38 | 0 | 4 | 74 | 37 | 107 | 5.34e-15 | 69.3 |
| Msa0997840 | AT3G20180.1 | 45.570 | 79 | 42 | 1 | 5 | 83 | 1 | 78 | 1.20e-14 | 68.6 |
| Msa0997840 | AT3G07600.1 | 42.529 | 87 | 50 | 0 | 1 | 87 | 1 | 87 | 9.45e-13 | 64.3 |
| Msa0997840 | AT5G48290.1 | 38.298 | 94 | 53 | 1 | 1 | 94 | 1 | 89 | 5.74e-12 | 62.8 |
Find 47 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATATGGAGCATAGCATTT+AGG | 0.203795 | 6_4:+77952302 | None:intergenic |
| CACATGATGGAGCAAGTTTC+GGG | 0.223186 | 6_4:+77952218 | None:intergenic |
| CACCTCTTCCACACTAAGTA+TGG | 0.264758 | 6_4:+77952697 | None:intergenic |
| GTAGGTGTAGGAGGCTTCTT+AGG | 0.298324 | 6_4:+77952377 | None:intergenic |
| ACCAGATGCAGAAAAGAAAA+AGG | 0.299032 | 6_4:-77952666 | Msa0997840:CDS |
| TCATAAACAACCTTACAATA+AGG | 0.334241 | 6_4:+77952248 | None:intergenic |
| CGCTTATCCACCTTATTGTA+AGG | 0.338213 | 6_4:-77952258 | Msa0997840:CDS |
| TCACATGATGGAGCAAGTTT+CGG | 0.360340 | 6_4:+77952217 | None:intergenic |
| CAAGGTGGATAAGGTCGATA+TGG | 0.371321 | 6_4:+77952287 | None:intergenic |
| GATATGGAGCATAGCATTTA+GGG | 0.388732 | 6_4:+77952303 | None:intergenic |
| AGGTGTAACTTCAGTATCAT+TGG | 0.406476 | 6_4:-77952813 | Msa0997840:CDS |
| AAAGTGTGATGGTAAGTGTA+AGG | 0.433385 | 6_4:-77952456 | Msa0997840:CDS |
| GCGTTAGAACAAGGTGGATA+AGG | 0.447371 | 6_4:+77952278 | None:intergenic |
| GGAGGCTTCTTAGGAGGTGC+AGG | 0.451480 | 6_4:+77952386 | None:intergenic |
| CATTGTTGGATGGGTGGTGT+AGG | 0.467474 | 6_4:+77952344 | None:intergenic |
| AATGGTTATAAAGATGCAAA+TGG | 0.470303 | 6_4:-77954479 | Msa0997840:CDS |
| GGTGTAGGAGGCTTCTCAGT+AGG | 0.495407 | 6_4:+77952359 | None:intergenic |
| TGTTGGATGGGTGGTGTAGG+AGG | 0.503506 | 6_4:+77952347 | None:intergenic |
| TGCACCATTGAGGACATTGT+TGG | 0.507565 | 6_4:+77952330 | None:intergenic |
| CACCATACTTAGTGTGGAAG+AGG | 0.508517 | 6_4:-77952699 | Msa0997840:CDS |
| GGCTTCTCAGTAGGTGTAGG+AGG | 0.515844 | 6_4:+77952368 | None:intergenic |
| TGTCACGACTTGAGTTGTAA+TGG | 0.519079 | 6_4:-77952563 | Msa0997840:CDS |
| CCATCCAACAATGTCCTCAA+TGG | 0.539149 | 6_4:-77952334 | Msa0997840:CDS |
| GGAGGCTTCTCAGTAGGTGT+AGG | 0.547951 | 6_4:+77952365 | None:intergenic |
| TGTGAAAGTCTAAAATGCGA+TGG | 0.551636 | 6_4:-77952518 | Msa0997840:CDS |
| CATTGAGGACATTGTTGGAT+GGG | 0.558013 | 6_4:+77952335 | None:intergenic |
| TCAAAATTAAGCAAGCATGA+AGG | 0.560798 | 6_4:-77954596 | Msa0997840:intron |
| CCATTGAGGACATTGTTGGA+TGG | 0.560801 | 6_4:+77952334 | None:intergenic |
| AAGTGTGATGGTAAGTGTAA+GGG | 0.566876 | 6_4:-77952455 | Msa0997840:CDS |
| AGCCCTCAAAACTGCTGCTG+AGG | 0.567072 | 6_4:-77954434 | Msa0997840:CDS |
| TTAGGGCATGTGCACCATTG+AGG | 0.567668 | 6_4:+77952320 | None:intergenic |
| GTGAAAGTCTAAAATGCGAT+GGG | 0.577969 | 6_4:-77952517 | Msa0997840:CDS |
| TGAGGACATTGTTGGATGGG+TGG | 0.580007 | 6_4:+77952338 | None:intergenic |
| GGTGTAGGAGGCTTCTTAGG+AGG | 0.582175 | 6_4:+77952380 | None:intergenic |
| AAAACTGCTGCTGAGGTCCA+AGG | 0.586097 | 6_4:-77954427 | Msa0997840:intron |
| ATGTGTGATCGGTGATGATG+TGG | 0.589300 | 6_4:-77952768 | Msa0997840:CDS |
| GGTGGATAAGCGTTAGAACA+AGG | 0.592082 | 6_4:+77952269 | None:intergenic |
| TAAACAACCTTACAATAAGG+TGG | 0.594529 | 6_4:+77952251 | None:intergenic |
| TAGTGTCACCATACTTAGTG+TGG | 0.597875 | 6_4:-77952705 | Msa0997840:CDS |
| GTAACTTCAGTATCATTGGA+AGG | 0.606718 | 6_4:-77952809 | Msa0997840:CDS |
| AAGGATAGTATATGTGTGAT+CGG | 0.630620 | 6_4:-77952779 | Msa0997840:CDS |
| TGTGAAGATTCAAAGTGTGA+TGG | 0.647633 | 6_4:-77952467 | Msa0997840:CDS |
| ATCATTGGAAGGAAATGACA+AGG | 0.661902 | 6_4:-77952798 | Msa0997840:CDS |
| GTAGGTATGATGTCACATGA+TGG | 0.671048 | 6_4:+77952205 | None:intergenic |
| TGTGACAACAAGAAGTGTGA+TGG | 0.671842 | 6_4:-77952419 | Msa0997840:CDS |
| ACATGATGGAGCAAGTTTCG+GGG | 0.686004 | 6_4:+77952219 | None:intergenic |
| GGATAAGCGTTAGAACAAGG+TGG | 0.701762 | 6_4:+77952272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAATTAATTTTA+CGG | + | chr6_4:77953003-77953022 | None:intergenic | 0.0% |
| !!! | TTTTTTAAAAATTAATTTTA+CGG | + | chr6_4:77953003-77953022 | None:intergenic | 0.0% |
| !! | CTTAAACAAAAATTAATTAA+AGG | + | chr6_4:77952579-77952598 | None:intergenic | 10.0% |
| !!! | AATTCTCATATTATTTTTAT+TGG | + | chr6_4:77952907-77952926 | None:intergenic | 10.0% |
| !!! | ATTTTAAATTTTCAAGATTT+TGG | + | chr6_4:77952936-77952955 | None:intergenic | 10.0% |
| !!! | AGTAAAAAATATTTTTTAGA+TGG | - | chr6_4:77953137-77953156 | Msa0997840:intron | 10.0% |
| !!! | ATTTTATAGTTTGATTTTAA+TGG | - | chr6_4:77953455-77953474 | Msa0997840:intron | 10.0% |
| !! | AATAAATAATGATATGATAT+TGG | - | chr6_4:77953569-77953588 | Msa0997840:intron | 10.0% |
| !! | AAAGTATAAATATTAAGAAT+CGG | + | chr6_4:77953937-77953956 | None:intergenic | 10.0% |
| !! | CTTAAACAAAAATTAATTAA+AGG | + | chr6_4:77952579-77952598 | None:intergenic | 10.0% |
| !!! | AATTCTCATATTATTTTTAT+TGG | + | chr6_4:77952907-77952926 | None:intergenic | 10.0% |
| !!! | ATTTTAAATTTTCAAGATTT+TGG | + | chr6_4:77952936-77952955 | None:intergenic | 10.0% |
| !!! | AGTAAAAAATATTTTTTAGA+TGG | - | chr6_4:77953137-77953156 | Msa0997840:intron | 10.0% |
| !!! | ATTTTATAGTTTGATTTTAA+TGG | - | chr6_4:77953455-77953474 | Msa0997840:intron | 10.0% |
| !! | AATAAATAATGATATGATAT+TGG | - | chr6_4:77953569-77953588 | Msa0997840:intron | 10.0% |
| !! | AAAGTATAAATATTAAGAAT+CGG | + | chr6_4:77953937-77953956 | None:intergenic | 10.0% |
| !!! | TTTTCAAATTGTTGTATTAA+GGG | + | chr6_4:77952529-77952548 | None:intergenic | 15.0% |
| !!! | TCTTTTTTCTTTCTTTTTAT+TGG | - | chr6_4:77952748-77952767 | Msa0997840:CDS | 15.0% |
| !! | ATTTCATTTACTTAAGAAAA+TGG | - | chr6_4:77953060-77953079 | Msa0997840:intron | 15.0% |
| !!! | TTTTTGCATTGTAAATTATA+CGG | - | chr6_4:77953212-77953231 | Msa0997840:intron | 15.0% |
| !! | TTATTCAATGAATCTAAAAA+GGG | + | chr6_4:77953333-77953352 | None:intergenic | 15.0% |
| !! | TTAAAAAAATGTCACTATTT+CGG | + | chr6_4:77953852-77953871 | None:intergenic | 15.0% |
| !!! | TTTTTAACTATTCTTTACTT+TGG | - | chr6_4:77953865-77953884 | Msa0997840:intron | 15.0% |
| !!! | TTTTCAAATTGTTGTATTAA+GGG | + | chr6_4:77952529-77952548 | None:intergenic | 15.0% |
| !!! | TCTTTTTTCTTTCTTTTTAT+TGG | - | chr6_4:77952748-77952767 | Msa0997840:CDS | 15.0% |
| !! | ATTTCATTTACTTAAGAAAA+TGG | - | chr6_4:77953060-77953079 | Msa0997840:intron | 15.0% |
| !!! | TTTTTGCATTGTAAATTATA+CGG | - | chr6_4:77953212-77953231 | Msa0997840:intron | 15.0% |
| !! | TTATTCAATGAATCTAAAAA+GGG | + | chr6_4:77953333-77953352 | None:intergenic | 15.0% |
| !! | TTAAAAAAATGTCACTATTT+CGG | + | chr6_4:77953852-77953871 | None:intergenic | 15.0% |
| !!! | TTTTTAACTATTCTTTACTT+TGG | - | chr6_4:77953865-77953884 | Msa0997840:intron | 15.0% |
| !! | AATGAAAATACAGCAAAAAA+TGG | - | chr6_4:77952332-77952351 | Msa0997840:CDS | 20.0% |
| !! | GTATGATTATTATATTACCT+TGG | + | chr6_4:77952422-77952441 | None:intergenic | 20.0% |
| !! | ATATGCAAACAACAAAAAAA+GGG | + | chr6_4:77952449-77952468 | None:intergenic | 20.0% |
| !! | AATATGCAAACAACAAAAAA+AGG | + | chr6_4:77952450-77952469 | None:intergenic | 20.0% |
| !!! | GAAAAATTCCTCTAAAAAAA+GGG | + | chr6_4:77952505-77952524 | None:intergenic | 20.0% |
| !!! | TGAAAAATTCCTCTAAAAAA+AGG | + | chr6_4:77952506-77952525 | None:intergenic | 20.0% |
| !!! | CTTTTCAAATTGTTGTATTA+AGG | + | chr6_4:77952530-77952549 | None:intergenic | 20.0% |
| !! | AAAAACATAATGTGAATATG+AGG | - | chr6_4:77952808-77952827 | Msa0997840:CDS | 20.0% |
| !!! | ATATAAGTTAGCATTTTACA+AGG | + | chr6_4:77952862-77952881 | None:intergenic | 20.0% |
| !!! | GTTTATTAACTTGTTTTACA+AGG | + | chr6_4:77952885-77952904 | None:intergenic | 20.0% |
| !! | TAATTCTTGTAAGGAATTAA+AGG | + | chr6_4:77952974-77952993 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAATTGTGAC+CGG | + | chr6_4:77953125-77953144 | None:intergenic | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | - | chr6_4:77953269-77953288 | Msa0997840:intron | 20.0% |
| !! | GTTATTCAATGAATCTAAAA+AGG | + | chr6_4:77953334-77953353 | None:intergenic | 20.0% |
| !! | TATTGAATAACTGATGTATT+TGG | + | chr6_4:77953381-77953400 | None:intergenic | 20.0% |
| !! | ACAAAGAAAAATGGTAAATA+AGG | - | chr6_4:77953635-77953654 | Msa0997840:intron | 20.0% |
| !!! | ATTTTAGACTTTCACATTTT+GGG | + | chr6_4:77954307-77954326 | None:intergenic | 20.0% |
| !! | AATGAAAATACAGCAAAAAA+TGG | - | chr6_4:77952332-77952351 | Msa0997840:CDS | 20.0% |
| !! | GTATGATTATTATATTACCT+TGG | + | chr6_4:77952422-77952441 | None:intergenic | 20.0% |
| !! | ATATGCAAACAACAAAAAAA+GGG | + | chr6_4:77952449-77952468 | None:intergenic | 20.0% |
| !! | AATATGCAAACAACAAAAAA+AGG | + | chr6_4:77952450-77952469 | None:intergenic | 20.0% |
| !!! | GAAAAATTCCTCTAAAAAAA+GGG | + | chr6_4:77952505-77952524 | None:intergenic | 20.0% |
| !!! | TGAAAAATTCCTCTAAAAAA+AGG | + | chr6_4:77952506-77952525 | None:intergenic | 20.0% |
| !!! | CTTTTCAAATTGTTGTATTA+AGG | + | chr6_4:77952530-77952549 | None:intergenic | 20.0% |
| !! | AAAAACATAATGTGAATATG+AGG | - | chr6_4:77952808-77952827 | Msa0997840:CDS | 20.0% |
| !!! | ATATAAGTTAGCATTTTACA+AGG | + | chr6_4:77952862-77952881 | None:intergenic | 20.0% |
| !!! | GTTTATTAACTTGTTTTACA+AGG | + | chr6_4:77952885-77952904 | None:intergenic | 20.0% |
| !! | TAATTCTTGTAAGGAATTAA+AGG | + | chr6_4:77952974-77952993 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAATTGTGAC+CGG | + | chr6_4:77953125-77953144 | None:intergenic | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | - | chr6_4:77953269-77953288 | Msa0997840:intron | 20.0% |
| !! | GTTATTCAATGAATCTAAAA+AGG | + | chr6_4:77953334-77953353 | None:intergenic | 20.0% |
| !! | TATTGAATAACTGATGTATT+TGG | + | chr6_4:77953381-77953400 | None:intergenic | 20.0% |
| !! | ACAAAGAAAAATGGTAAATA+AGG | - | chr6_4:77953635-77953654 | Msa0997840:intron | 20.0% |
| !!! | ATTTTAGACTTTCACATTTT+GGG | + | chr6_4:77954307-77954326 | None:intergenic | 20.0% |
| !!! | AATTTTGAAACAAACAGAAG+TGG | + | chr6_4:77952221-77952240 | None:intergenic | 25.0% |
| ! | AATGGTTATAAAGATGCAAA+TGG | - | chr6_4:77952350-77952369 | Msa0997840:CDS | 25.0% |
| !!! | AATTTTTGTTTAAGCATGCT+AGG | - | chr6_4:77952585-77952604 | Msa0997840:CDS | 25.0% |
| !!! | ATTTTTGTTTAAGCATGCTA+GGG | - | chr6_4:77952586-77952605 | Msa0997840:CDS | 25.0% |
| ! | CCTCATATACATGATATATT+AGG | + | chr6_4:77952612-77952631 | None:intergenic | 25.0% |
| ! | CCTAATATATCATGTATATG+AGG | - | chr6_4:77952609-77952628 | Msa0997840:CDS | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | - | chr6_4:77953268-77953287 | Msa0997840:intron | 25.0% |
| !! | ACAACTAATAAAGATGGTTT+TGG | + | chr6_4:77953499-77953518 | None:intergenic | 25.0% |
| ! | CTAACTACAACTAATAAAGA+TGG | + | chr6_4:77953505-77953524 | None:intergenic | 25.0% |
| ! | CATCTTTATTAGTTGTAGTT+AGG | - | chr6_4:77953503-77953522 | Msa0997840:intron | 25.0% |
| ! | AGTGTTAAGACAAAGAAAAA+TGG | - | chr6_4:77953626-77953645 | Msa0997840:intron | 25.0% |
| !!! | ACCCAAGATTTTTTTTCATT+AGG | - | chr6_4:77953810-77953829 | Msa0997840:intron | 25.0% |
| ! | CCCTAATGAAAAAAAATCTT+GGG | + | chr6_4:77953814-77953833 | None:intergenic | 25.0% |
| !!! | CCCAAGATTTTTTTTCATTA+GGG | - | chr6_4:77953811-77953830 | Msa0997840:intron | 25.0% |
| ! | AGAAATAGTGATCAAAATAG+AGG | + | chr6_4:77953894-77953913 | None:intergenic | 25.0% |
| !! | TACTTTAGAGACCATTATTT+CGG | - | chr6_4:77953951-77953970 | Msa0997840:intron | 25.0% |
| ! | ATAAAAATGGGTCAATATCT+TGG | + | chr6_4:77953996-77954015 | None:intergenic | 25.0% |
| !!! | AGATATTGACCCATTTTTAT+AGG | - | chr6_4:77953996-77954015 | Msa0997840:intron | 25.0% |
| ! | GAAGTTACACCTATAAAAAT+GGG | + | chr6_4:77954008-77954027 | None:intergenic | 25.0% |
| ! | TGAAGTTACACCTATAAAAA+TGG | + | chr6_4:77954009-77954028 | None:intergenic | 25.0% |
| !! | CATTTTAGACTTTCACATTT+TGG | + | chr6_4:77954308-77954327 | None:intergenic | 25.0% |
| ! | TCATAAACAACCTTACAATA+AGG | + | chr6_4:77954584-77954603 | None:intergenic | 25.0% |
| !!! | AATTTTGAAACAAACAGAAG+TGG | + | chr6_4:77952221-77952240 | None:intergenic | 25.0% |
| ! | AATGGTTATAAAGATGCAAA+TGG | - | chr6_4:77952350-77952369 | Msa0997840:CDS | 25.0% |
| !!! | AATTTTTGTTTAAGCATGCT+AGG | - | chr6_4:77952585-77952604 | Msa0997840:CDS | 25.0% |
| !!! | ATTTTTGTTTAAGCATGCTA+GGG | - | chr6_4:77952586-77952605 | Msa0997840:CDS | 25.0% |
| ! | CCTCATATACATGATATATT+AGG | + | chr6_4:77952612-77952631 | None:intergenic | 25.0% |
| ! | CCTAATATATCATGTATATG+AGG | - | chr6_4:77952609-77952628 | Msa0997840:CDS | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | - | chr6_4:77953268-77953287 | Msa0997840:intron | 25.0% |
| !! | ACAACTAATAAAGATGGTTT+TGG | + | chr6_4:77953499-77953518 | None:intergenic | 25.0% |
| ! | CTAACTACAACTAATAAAGA+TGG | + | chr6_4:77953505-77953524 | None:intergenic | 25.0% |
| ! | CATCTTTATTAGTTGTAGTT+AGG | - | chr6_4:77953503-77953522 | Msa0997840:intron | 25.0% |
| ! | AGTGTTAAGACAAAGAAAAA+TGG | - | chr6_4:77953626-77953645 | Msa0997840:intron | 25.0% |
| !!! | ACCCAAGATTTTTTTTCATT+AGG | - | chr6_4:77953810-77953829 | Msa0997840:intron | 25.0% |
| ! | CCCTAATGAAAAAAAATCTT+GGG | + | chr6_4:77953814-77953833 | None:intergenic | 25.0% |
| !!! | CCCAAGATTTTTTTTCATTA+GGG | - | chr6_4:77953811-77953830 | Msa0997840:intron | 25.0% |
| ! | AGAAATAGTGATCAAAATAG+AGG | + | chr6_4:77953894-77953913 | None:intergenic | 25.0% |
| !! | TACTTTAGAGACCATTATTT+CGG | - | chr6_4:77953951-77953970 | Msa0997840:intron | 25.0% |
| ! | ATAAAAATGGGTCAATATCT+TGG | + | chr6_4:77953996-77954015 | None:intergenic | 25.0% |
| !!! | AGATATTGACCCATTTTTAT+AGG | - | chr6_4:77953996-77954015 | Msa0997840:intron | 25.0% |
| ! | GAAGTTACACCTATAAAAAT+GGG | + | chr6_4:77954008-77954027 | None:intergenic | 25.0% |
| ! | TGAAGTTACACCTATAAAAA+TGG | + | chr6_4:77954009-77954028 | None:intergenic | 25.0% |
| !! | CATTTTAGACTTTCACATTT+TGG | + | chr6_4:77954308-77954327 | None:intergenic | 25.0% |
| ! | TCATAAACAACCTTACAATA+AGG | + | chr6_4:77954584-77954603 | None:intergenic | 25.0% |
| TCAAAATTAAGCAAGCATGA+AGG | - | chr6_4:77952233-77952252 | Msa0997840:CDS | 30.0% | |
| CAAACAACAAAAAAAGGGTT+TGG | + | chr6_4:77952444-77952463 | None:intergenic | 30.0% | |
| CTAAAAAAAGGGTGAACATT+TGG | + | chr6_4:77952494-77952513 | None:intergenic | 30.0% | |
| !!! | AATGTTCACCCTTTTTTTAG+AGG | - | chr6_4:77952494-77952513 | Msa0997840:CDS | 30.0% |
| CGGAAAATCTAATTCTTGTA+AGG | + | chr6_4:77952983-77953002 | None:intergenic | 30.0% | |
| ! | CTATCTTAAAGTACCATATC+CGG | - | chr6_4:77953103-77953122 | Msa0997840:intron | 30.0% |
| CATTGAATAACTGATGTATC+TGG | - | chr6_4:77953343-77953362 | Msa0997840:intron | 30.0% | |
| TTTCTTATAATAACCACGAG+AGG | - | chr6_4:77953420-77953439 | Msa0997840:intron | 30.0% | |
| TTCTTATAATAACCACGAGA+GGG | - | chr6_4:77953421-77953440 | Msa0997840:intron | 30.0% | |
| GCCCTAATGAAAAAAAATCT+TGG | + | chr6_4:77953815-77953834 | None:intergenic | 30.0% | |
| GTAAATAGTTGCCGAAATAA+TGG | + | chr6_4:77953965-77953984 | None:intergenic | 30.0% | |
| AAGGATAGTATATGTGTGAT+CGG | - | chr6_4:77954050-77954069 | Msa0997840:intron | 30.0% | |
| GGAAGAAGAAAAGAAAAAAG+AGG | - | chr6_4:77954184-77954203 | Msa0997840:intron | 30.0% | |
| TAAACAACCTTACAATAAGG+TGG | + | chr6_4:77954581-77954600 | None:intergenic | 30.0% | |
| TCAAAATTAAGCAAGCATGA+AGG | - | chr6_4:77952233-77952252 | Msa0997840:CDS | 30.0% | |
| CAAACAACAAAAAAAGGGTT+TGG | + | chr6_4:77952444-77952463 | None:intergenic | 30.0% | |
| CTAAAAAAAGGGTGAACATT+TGG | + | chr6_4:77952494-77952513 | None:intergenic | 30.0% | |
| !!! | AATGTTCACCCTTTTTTTAG+AGG | - | chr6_4:77952494-77952513 | Msa0997840:CDS | 30.0% |
| CGGAAAATCTAATTCTTGTA+AGG | + | chr6_4:77952983-77953002 | None:intergenic | 30.0% | |
| ! | CTATCTTAAAGTACCATATC+CGG | - | chr6_4:77953103-77953122 | Msa0997840:intron | 30.0% |
| CATTGAATAACTGATGTATC+TGG | - | chr6_4:77953343-77953362 | Msa0997840:intron | 30.0% | |
| TTTCTTATAATAACCACGAG+AGG | - | chr6_4:77953420-77953439 | Msa0997840:intron | 30.0% | |
| TTCTTATAATAACCACGAGA+GGG | - | chr6_4:77953421-77953440 | Msa0997840:intron | 30.0% | |
| GCCCTAATGAAAAAAAATCT+TGG | + | chr6_4:77953815-77953834 | None:intergenic | 30.0% | |
| GTAAATAGTTGCCGAAATAA+TGG | + | chr6_4:77953965-77953984 | None:intergenic | 30.0% | |
| AAGGATAGTATATGTGTGAT+CGG | - | chr6_4:77954050-77954069 | Msa0997840:intron | 30.0% | |
| GGAAGAAGAAAAGAAAAAAG+AGG | - | chr6_4:77954184-77954203 | Msa0997840:intron | 30.0% | |
| TAAACAACCTTACAATAAGG+TGG | + | chr6_4:77954581-77954600 | None:intergenic | 30.0% | |
| TCTAACTCTCATCAACATGT+TGG | - | chr6_4:77952675-77952694 | Msa0997840:CDS | 35.0% | |
| CTTATAATTGTGACCGGATA+TGG | + | chr6_4:77953119-77953138 | None:intergenic | 35.0% | |
| AAATGCTAACAAGTGTCCTA+AGG | - | chr6_4:77953161-77953180 | Msa0997840:intron | 35.0% | |
| AATGCTAACAAGTGTCCTAA+GGG | - | chr6_4:77953162-77953181 | Msa0997840:intron | 35.0% | |
| TTCCTTAAACAATGCCCTTA+GGG | - | chr6_4:77953292-77953311 | Msa0997840:intron | 35.0% | |
| TCTTATAATAACCACGAGAG+GGG | - | chr6_4:77953422-77953441 | Msa0997840:intron | 35.0% | |
| GTGTACATGATTCATTGTGA+TGG | - | chr6_4:77953770-77953789 | Msa0997840:intron | 35.0% | |
| AGGTGTAACTTCAGTATCAT+TGG | - | chr6_4:77954016-77954035 | Msa0997840:intron | 35.0% | |
| GTAACTTCAGTATCATTGGA+AGG | - | chr6_4:77954020-77954039 | Msa0997840:intron | 35.0% | |
| ATCATTGGAAGGAAATGACA+AGG | - | chr6_4:77954031-77954050 | Msa0997840:intron | 35.0% | |
| ACCAGATGCAGAAAAGAAAA+AGG | - | chr6_4:77954163-77954182 | Msa0997840:intron | 35.0% | |
| ! | TCCTTTTTCTTTTCTGCATC+TGG | + | chr6_4:77954167-77954186 | None:intergenic | 35.0% |
| ! | TGTGAAAGTCTAAAATGCGA+TGG | - | chr6_4:77954311-77954330 | Msa0997840:intron | 35.0% |
| ! | GTGAAAGTCTAAAATGCGAT+GGG | - | chr6_4:77954312-77954331 | Msa0997840:intron | 35.0% |
| TGTGAAGATTCAAAGTGTGA+TGG | - | chr6_4:77954362-77954381 | Msa0997840:intron | 35.0% | |
| AAAGTGTGATGGTAAGTGTA+AGG | - | chr6_4:77954373-77954392 | Msa0997840:intron | 35.0% | |
| AAGTGTGATGGTAAGTGTAA+GGG | - | chr6_4:77954374-77954393 | Msa0997840:intron | 35.0% | |
| GATATGGAGCATAGCATTTA+GGG | + | chr6_4:77954529-77954548 | None:intergenic | 35.0% | |
| TCTAACTCTCATCAACATGT+TGG | - | chr6_4:77952675-77952694 | Msa0997840:CDS | 35.0% | |
| CTTATAATTGTGACCGGATA+TGG | + | chr6_4:77953119-77953138 | None:intergenic | 35.0% | |
| AAATGCTAACAAGTGTCCTA+AGG | - | chr6_4:77953161-77953180 | Msa0997840:intron | 35.0% | |
| AATGCTAACAAGTGTCCTAA+GGG | - | chr6_4:77953162-77953181 | Msa0997840:intron | 35.0% | |
| TTCCTTAAACAATGCCCTTA+GGG | - | chr6_4:77953292-77953311 | Msa0997840:intron | 35.0% | |
| TCTTATAATAACCACGAGAG+GGG | - | chr6_4:77953422-77953441 | Msa0997840:intron | 35.0% | |
| GTGTACATGATTCATTGTGA+TGG | - | chr6_4:77953770-77953789 | Msa0997840:intron | 35.0% | |
| AGGTGTAACTTCAGTATCAT+TGG | - | chr6_4:77954016-77954035 | Msa0997840:intron | 35.0% | |
| GTAACTTCAGTATCATTGGA+AGG | - | chr6_4:77954020-77954039 | Msa0997840:intron | 35.0% | |
| ATCATTGGAAGGAAATGACA+AGG | - | chr6_4:77954031-77954050 | Msa0997840:intron | 35.0% | |
| ACCAGATGCAGAAAAGAAAA+AGG | - | chr6_4:77954163-77954182 | Msa0997840:intron | 35.0% | |
| ! | TCCTTTTTCTTTTCTGCATC+TGG | + | chr6_4:77954167-77954186 | None:intergenic | 35.0% |
| ! | TGTGAAAGTCTAAAATGCGA+TGG | - | chr6_4:77954311-77954330 | Msa0997840:intron | 35.0% |
| ! | GTGAAAGTCTAAAATGCGAT+GGG | - | chr6_4:77954312-77954331 | Msa0997840:intron | 35.0% |
| TGTGAAGATTCAAAGTGTGA+TGG | - | chr6_4:77954362-77954381 | Msa0997840:intron | 35.0% | |
| AAAGTGTGATGGTAAGTGTA+AGG | - | chr6_4:77954373-77954392 | Msa0997840:intron | 35.0% | |
| AAGTGTGATGGTAAGTGTAA+GGG | - | chr6_4:77954374-77954393 | Msa0997840:intron | 35.0% | |
| GATATGGAGCATAGCATTTA+GGG | + | chr6_4:77954529-77954548 | None:intergenic | 35.0% | |
| GATGCTTAAACAATGCCCTT+AGG | + | chr6_4:77953180-77953199 | None:intergenic | 40.0% | |
| GTTCCTTAAACAATGCCCTT+AGG | - | chr6_4:77953291-77953310 | Msa0997840:intron | 40.0% | |
| TTACGCACTCGCATATTAGT+AGG | - | chr6_4:77953695-77953714 | Msa0997840:intron | 40.0% | |
| GCTCAAATCAGTTGTCTTAG+TGG | - | chr6_4:77953720-77953739 | Msa0997840:intron | 40.0% | |
| CACAAGTGTAGATCTCTTGT+GGG | - | chr6_4:77953743-77953762 | Msa0997840:intron | 40.0% | |
| ATTGTGATGGTACACAGTCT+GGG | - | chr6_4:77953783-77953802 | Msa0997840:intron | 40.0% | |
| TAGTGTCACCATACTTAGTG+TGG | - | chr6_4:77954124-77954143 | Msa0997840:intron | 40.0% | |
| ! | TGTCACGACTTGAGTTGTAA+TGG | - | chr6_4:77954266-77954285 | Msa0997840:intron | 40.0% |
| ! | TGTGACAACAAGAAGTGTGA+TGG | - | chr6_4:77954410-77954429 | Msa0997840:intron | 40.0% |
| CATTGAGGACATTGTTGGAT+GGG | + | chr6_4:77954497-77954516 | None:intergenic | 40.0% | |
| CGATATGGAGCATAGCATTT+AGG | + | chr6_4:77954530-77954549 | None:intergenic | 40.0% | |
| CGCTTATCCACCTTATTGTA+AGG | - | chr6_4:77954571-77954590 | Msa0997840:intron | 40.0% | |
| ! | TCACATGATGGAGCAAGTTT+CGG | + | chr6_4:77954615-77954634 | None:intergenic | 40.0% |
| GATGCTTAAACAATGCCCTT+AGG | + | chr6_4:77953180-77953199 | None:intergenic | 40.0% | |
| GTTCCTTAAACAATGCCCTT+AGG | - | chr6_4:77953291-77953310 | Msa0997840:intron | 40.0% | |
| TTACGCACTCGCATATTAGT+AGG | - | chr6_4:77953695-77953714 | Msa0997840:intron | 40.0% | |
| GCTCAAATCAGTTGTCTTAG+TGG | - | chr6_4:77953720-77953739 | Msa0997840:intron | 40.0% | |
| CACAAGTGTAGATCTCTTGT+GGG | - | chr6_4:77953743-77953762 | Msa0997840:intron | 40.0% | |
| ATTGTGATGGTACACAGTCT+GGG | - | chr6_4:77953783-77953802 | Msa0997840:intron | 40.0% | |
| TAGTGTCACCATACTTAGTG+TGG | - | chr6_4:77954124-77954143 | Msa0997840:intron | 40.0% | |
| ! | TGTCACGACTTGAGTTGTAA+TGG | - | chr6_4:77954266-77954285 | Msa0997840:intron | 40.0% |
| ! | TGTGACAACAAGAAGTGTGA+TGG | - | chr6_4:77954410-77954429 | Msa0997840:intron | 40.0% |
| CATTGAGGACATTGTTGGAT+GGG | + | chr6_4:77954497-77954516 | None:intergenic | 40.0% | |
| CGATATGGAGCATAGCATTT+AGG | + | chr6_4:77954530-77954549 | None:intergenic | 40.0% | |
| CGCTTATCCACCTTATTGTA+AGG | - | chr6_4:77954571-77954590 | Msa0997840:intron | 40.0% | |
| ! | TCACATGATGGAGCAAGTTT+CGG | + | chr6_4:77954615-77954634 | None:intergenic | 40.0% |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | + | chr6_4:77953297-77953316 | None:intergenic | 45.0% |
| CTTGCTAACAAGTGCCCTAA+GGG | + | chr6_4:77953309-77953328 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | + | chr6_4:77953310-77953329 | None:intergenic | 45.0% | |
| GCACAAGTGTAGATCTCTTG+TGG | - | chr6_4:77953742-77953761 | Msa0997840:intron | 45.0% | |
| CATTGTGATGGTACACAGTC+TGG | - | chr6_4:77953782-77953801 | Msa0997840:intron | 45.0% | |
| ! | ATGTGTGATCGGTGATGATG+TGG | - | chr6_4:77954061-77954080 | Msa0997840:intron | 45.0% |
| CACCATACTTAGTGTGGAAG+AGG | - | chr6_4:77954130-77954149 | Msa0997840:intron | 45.0% | |
| CACCTCTTCCACACTAAGTA+TGG | + | chr6_4:77954135-77954154 | None:intergenic | 45.0% | |
| ! | AGCATGTCGTAGTGTTTTGC+AGG | - | chr6_4:77954229-77954248 | Msa0997840:intron | 45.0% |
| ! | GCATGTCGTAGTGTTTTGCA+GGG | - | chr6_4:77954230-77954249 | Msa0997840:intron | 45.0% |
| CCATTGAGGACATTGTTGGA+TGG | + | chr6_4:77954498-77954517 | None:intergenic | 45.0% | |
| CCATCCAACAATGTCCTCAA+TGG | - | chr6_4:77954495-77954514 | Msa0997840:intron | 45.0% | |
| TGCACCATTGAGGACATTGT+TGG | + | chr6_4:77954502-77954521 | None:intergenic | 45.0% | |
| CAAGGTGGATAAGGTCGATA+TGG | + | chr6_4:77954545-77954564 | None:intergenic | 45.0% | |
| GCGTTAGAACAAGGTGGATA+AGG | + | chr6_4:77954554-77954573 | None:intergenic | 45.0% | |
| GGATAAGCGTTAGAACAAGG+TGG | + | chr6_4:77954560-77954579 | None:intergenic | 45.0% | |
| GGTGGATAAGCGTTAGAACA+AGG | + | chr6_4:77954563-77954582 | None:intergenic | 45.0% | |
| ! | ACATGATGGAGCAAGTTTCG+GGG | + | chr6_4:77954613-77954632 | None:intergenic | 45.0% |
| ! | CACATGATGGAGCAAGTTTC+GGG | + | chr6_4:77954614-77954633 | None:intergenic | 45.0% |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | + | chr6_4:77953297-77953316 | None:intergenic | 45.0% |
| CTTGCTAACAAGTGCCCTAA+GGG | + | chr6_4:77953309-77953328 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | + | chr6_4:77953310-77953329 | None:intergenic | 45.0% | |
| GCACAAGTGTAGATCTCTTG+TGG | - | chr6_4:77953742-77953761 | Msa0997840:intron | 45.0% | |
| CATTGTGATGGTACACAGTC+TGG | - | chr6_4:77953782-77953801 | Msa0997840:intron | 45.0% | |
| ! | ATGTGTGATCGGTGATGATG+TGG | - | chr6_4:77954061-77954080 | Msa0997840:intron | 45.0% |
| CACCATACTTAGTGTGGAAG+AGG | - | chr6_4:77954130-77954149 | Msa0997840:intron | 45.0% | |
| CACCTCTTCCACACTAAGTA+TGG | + | chr6_4:77954135-77954154 | None:intergenic | 45.0% | |
| ! | AGCATGTCGTAGTGTTTTGC+AGG | - | chr6_4:77954229-77954248 | Msa0997840:intron | 45.0% |
| ! | GCATGTCGTAGTGTTTTGCA+GGG | - | chr6_4:77954230-77954249 | Msa0997840:intron | 45.0% |
| CCATTGAGGACATTGTTGGA+TGG | + | chr6_4:77954498-77954517 | None:intergenic | 45.0% | |
| CCATCCAACAATGTCCTCAA+TGG | - | chr6_4:77954495-77954514 | Msa0997840:intron | 45.0% | |
| TGCACCATTGAGGACATTGT+TGG | + | chr6_4:77954502-77954521 | None:intergenic | 45.0% | |
| CAAGGTGGATAAGGTCGATA+TGG | + | chr6_4:77954545-77954564 | None:intergenic | 45.0% | |
| GCGTTAGAACAAGGTGGATA+AGG | + | chr6_4:77954554-77954573 | None:intergenic | 45.0% | |
| GGATAAGCGTTAGAACAAGG+TGG | + | chr6_4:77954560-77954579 | None:intergenic | 45.0% | |
| GGTGGATAAGCGTTAGAACA+AGG | + | chr6_4:77954563-77954582 | None:intergenic | 45.0% | |
| ! | ACATGATGGAGCAAGTTTCG+GGG | + | chr6_4:77954613-77954632 | None:intergenic | 45.0% |
| ! | CACATGATGGAGCAAGTTTC+GGG | + | chr6_4:77954614-77954633 | None:intergenic | 45.0% |
| !! | GACCTCAGCAGCAGTTTTGA+GGG | + | chr6_4:77952400-77952419 | None:intergenic | 50.0% |
| AAAACTGCTGCTGAGGTCCA+AGG | - | chr6_4:77952402-77952421 | Msa0997840:CDS | 50.0% | |
| TAACACATACTCCCCTCTCG+TGG | + | chr6_4:77953436-77953455 | None:intergenic | 50.0% | |
| GTAGGTGTAGGAGGCTTCTT+AGG | + | chr6_4:77954455-77954474 | None:intergenic | 50.0% | |
| CATTGTTGGATGGGTGGTGT+AGG | + | chr6_4:77954488-77954507 | None:intergenic | 50.0% | |
| TGAGGACATTGTTGGATGGG+TGG | + | chr6_4:77954494-77954513 | None:intergenic | 50.0% | |
| TTAGGGCATGTGCACCATTG+AGG | + | chr6_4:77954512-77954531 | None:intergenic | 50.0% | |
| !! | GACCTCAGCAGCAGTTTTGA+GGG | + | chr6_4:77952400-77952419 | None:intergenic | 50.0% |
| AAAACTGCTGCTGAGGTCCA+AGG | - | chr6_4:77952402-77952421 | Msa0997840:CDS | 50.0% | |
| TAACACATACTCCCCTCTCG+TGG | + | chr6_4:77953436-77953455 | None:intergenic | 50.0% | |
| GTAGGTGTAGGAGGCTTCTT+AGG | + | chr6_4:77954455-77954474 | None:intergenic | 50.0% | |
| CATTGTTGGATGGGTGGTGT+AGG | + | chr6_4:77954488-77954507 | None:intergenic | 50.0% | |
| TGAGGACATTGTTGGATGGG+TGG | + | chr6_4:77954494-77954513 | None:intergenic | 50.0% | |
| TTAGGGCATGTGCACCATTG+AGG | + | chr6_4:77954512-77954531 | None:intergenic | 50.0% | |
| AGCCCTCAAAACTGCTGCTG+AGG | - | chr6_4:77952395-77952414 | Msa0997840:CDS | 55.0% | |
| ! | GGACCTCAGCAGCAGTTTTG+AGG | + | chr6_4:77952401-77952420 | None:intergenic | 55.0% |
| GGTGTAGGAGGCTTCTTAGG+AGG | + | chr6_4:77954452-77954471 | None:intergenic | 55.0% | |
| GGCTTCTCAGTAGGTGTAGG+AGG | + | chr6_4:77954464-77954483 | None:intergenic | 55.0% | |
| GGAGGCTTCTCAGTAGGTGT+AGG | + | chr6_4:77954467-77954486 | None:intergenic | 55.0% | |
| GGTGTAGGAGGCTTCTCAGT+AGG | + | chr6_4:77954473-77954492 | None:intergenic | 55.0% | |
| TGTTGGATGGGTGGTGTAGG+AGG | + | chr6_4:77954485-77954504 | None:intergenic | 55.0% | |
| AGCCCTCAAAACTGCTGCTG+AGG | - | chr6_4:77952395-77952414 | Msa0997840:CDS | 55.0% | |
| ! | GGACCTCAGCAGCAGTTTTG+AGG | + | chr6_4:77952401-77952420 | None:intergenic | 55.0% |
| GGTGTAGGAGGCTTCTTAGG+AGG | + | chr6_4:77954452-77954471 | None:intergenic | 55.0% | |
| GGCTTCTCAGTAGGTGTAGG+AGG | + | chr6_4:77954464-77954483 | None:intergenic | 55.0% | |
| GGAGGCTTCTCAGTAGGTGT+AGG | + | chr6_4:77954467-77954486 | None:intergenic | 55.0% | |
| GGTGTAGGAGGCTTCTCAGT+AGG | + | chr6_4:77954473-77954492 | None:intergenic | 55.0% | |
| TGTTGGATGGGTGGTGTAGG+AGG | + | chr6_4:77954485-77954504 | None:intergenic | 55.0% | |
| ! | GGAGGCTTCTTAGGAGGTGC+AGG | + | chr6_4:77954446-77954465 | None:intergenic | 60.0% |
| ! | GGAGGCTTCTTAGGAGGTGC+AGG | + | chr6_4:77954446-77954465 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 77952217 | 77954634 | 77952217 | ID=Msa0997840;Name=Msa0997840 |
| chr6_4 | mRNA | 77952217 | 77954634 | 77952217 | ID=Msa0997840-mRNA-1;Parent=Msa0997840;Name=Msa0997840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=32|1|0.66|1|0.5|0.33|3|0|233 |
| chr6_4 | exon | 77952217 | 77952833 | 77952217 | ID=Msa0997840-mRNA-1:exon:14733;Parent=Msa0997840-mRNA-1 |
| chr6_4 | exon | 77954428 | 77954506 | 77954428 | ID=Msa0997840-mRNA-1:exon:14732;Parent=Msa0997840-mRNA-1 |
| chr6_4 | exon | 77954597 | 77954634 | 77954597 | ID=Msa0997840-mRNA-1:exon:14731;Parent=Msa0997840-mRNA-1 |
| chr6_4 | five_prime_UTR | 77954603 | 77954634 | 77954603 | ID=Msa0997840-mRNA-1:five_prime_utr;Parent=Msa0997840-mRNA-1 |
| chr6_4 | CDS | 77954597 | 77954602 | 77954597 | ID=Msa0997840-mRNA-1:cds;Parent=Msa0997840-mRNA-1 |
| chr6_4 | CDS | 77954428 | 77954506 | 77954428 | ID=Msa0997840-mRNA-1:cds;Parent=Msa0997840-mRNA-1 |
| chr6_4 | CDS | 77952217 | 77952833 | 77952217 | ID=Msa0997840-mRNA-1:cds;Parent=Msa0997840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
