AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0997840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0997840 MtrunA17_Chr6g0483561 93.991 233 14 0 1 233 1 233 6.95e-122 345
Msa0997840 MtrunA17_Chr6g0483581 95.708 233 10 0 1 233 1 233 5.70e-110 315
Msa0997840 MtrunA17_Chr6g0483521 67.227 238 58 8 1 233 1 223 2.56e-65 202
Msa0997840 MtrunA17_Chr6g0483511 60.766 209 53 5 1 208 1 181 1.38e-64 198
Msa0997840 MtrunA17_Chr5g0438551 51.087 92 42 2 3 91 2 93 5.65e-21 85.1
Msa0997840 MtrunA17_Chr2g0290831 50.667 75 37 0 1 75 1 75 1.18e-16 72.4
Msa0997840 MtrunA17_Chr3g0120551 42.667 75 43 0 2 76 3 77 5.97e-15 68.9
Msa0997840 MtrunA17_Chr3g0120541 42.353 85 46 1 2 86 3 84 9.09e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0997840 AT3G20180.3 48.193 83 42 1 1 83 1 82 2.24e-17 75.9
Msa0997840 AT3G20180.2 45.783 83 44 1 1 83 20 101 3.24e-16 73.2
Msa0997840 AT4G05030.2 45.946 74 40 0 1 74 1 74 2.37e-15 69.3
Msa0997840 AT3G20180.4 46.250 80 42 1 4 83 2 80 3.23e-15 70.1
Msa0997840 AT4G05030.1 46.479 71 38 0 4 74 37 107 5.34e-15 69.3
Msa0997840 AT3G20180.1 45.570 79 42 1 5 83 1 78 1.20e-14 68.6
Msa0997840 AT3G07600.1 42.529 87 50 0 1 87 1 87 9.45e-13 64.3
Msa0997840 AT5G48290.1 38.298 94 53 1 1 94 1 89 5.74e-12 62.8

Find 47 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATATGGAGCATAGCATTT+AGG 0.203795 6_4:+77952302 None:intergenic
CACATGATGGAGCAAGTTTC+GGG 0.223186 6_4:+77952218 None:intergenic
CACCTCTTCCACACTAAGTA+TGG 0.264758 6_4:+77952697 None:intergenic
GTAGGTGTAGGAGGCTTCTT+AGG 0.298324 6_4:+77952377 None:intergenic
ACCAGATGCAGAAAAGAAAA+AGG 0.299032 6_4:-77952666 Msa0997840:CDS
TCATAAACAACCTTACAATA+AGG 0.334241 6_4:+77952248 None:intergenic
CGCTTATCCACCTTATTGTA+AGG 0.338213 6_4:-77952258 Msa0997840:CDS
TCACATGATGGAGCAAGTTT+CGG 0.360340 6_4:+77952217 None:intergenic
CAAGGTGGATAAGGTCGATA+TGG 0.371321 6_4:+77952287 None:intergenic
GATATGGAGCATAGCATTTA+GGG 0.388732 6_4:+77952303 None:intergenic
AGGTGTAACTTCAGTATCAT+TGG 0.406476 6_4:-77952813 Msa0997840:CDS
AAAGTGTGATGGTAAGTGTA+AGG 0.433385 6_4:-77952456 Msa0997840:CDS
GCGTTAGAACAAGGTGGATA+AGG 0.447371 6_4:+77952278 None:intergenic
GGAGGCTTCTTAGGAGGTGC+AGG 0.451480 6_4:+77952386 None:intergenic
CATTGTTGGATGGGTGGTGT+AGG 0.467474 6_4:+77952344 None:intergenic
AATGGTTATAAAGATGCAAA+TGG 0.470303 6_4:-77954479 Msa0997840:CDS
GGTGTAGGAGGCTTCTCAGT+AGG 0.495407 6_4:+77952359 None:intergenic
TGTTGGATGGGTGGTGTAGG+AGG 0.503506 6_4:+77952347 None:intergenic
TGCACCATTGAGGACATTGT+TGG 0.507565 6_4:+77952330 None:intergenic
CACCATACTTAGTGTGGAAG+AGG 0.508517 6_4:-77952699 Msa0997840:CDS
GGCTTCTCAGTAGGTGTAGG+AGG 0.515844 6_4:+77952368 None:intergenic
TGTCACGACTTGAGTTGTAA+TGG 0.519079 6_4:-77952563 Msa0997840:CDS
CCATCCAACAATGTCCTCAA+TGG 0.539149 6_4:-77952334 Msa0997840:CDS
GGAGGCTTCTCAGTAGGTGT+AGG 0.547951 6_4:+77952365 None:intergenic
TGTGAAAGTCTAAAATGCGA+TGG 0.551636 6_4:-77952518 Msa0997840:CDS
CATTGAGGACATTGTTGGAT+GGG 0.558013 6_4:+77952335 None:intergenic
TCAAAATTAAGCAAGCATGA+AGG 0.560798 6_4:-77954596 Msa0997840:intron
CCATTGAGGACATTGTTGGA+TGG 0.560801 6_4:+77952334 None:intergenic
AAGTGTGATGGTAAGTGTAA+GGG 0.566876 6_4:-77952455 Msa0997840:CDS
AGCCCTCAAAACTGCTGCTG+AGG 0.567072 6_4:-77954434 Msa0997840:CDS
TTAGGGCATGTGCACCATTG+AGG 0.567668 6_4:+77952320 None:intergenic
GTGAAAGTCTAAAATGCGAT+GGG 0.577969 6_4:-77952517 Msa0997840:CDS
TGAGGACATTGTTGGATGGG+TGG 0.580007 6_4:+77952338 None:intergenic
GGTGTAGGAGGCTTCTTAGG+AGG 0.582175 6_4:+77952380 None:intergenic
AAAACTGCTGCTGAGGTCCA+AGG 0.586097 6_4:-77954427 Msa0997840:intron
ATGTGTGATCGGTGATGATG+TGG 0.589300 6_4:-77952768 Msa0997840:CDS
GGTGGATAAGCGTTAGAACA+AGG 0.592082 6_4:+77952269 None:intergenic
TAAACAACCTTACAATAAGG+TGG 0.594529 6_4:+77952251 None:intergenic
TAGTGTCACCATACTTAGTG+TGG 0.597875 6_4:-77952705 Msa0997840:CDS
GTAACTTCAGTATCATTGGA+AGG 0.606718 6_4:-77952809 Msa0997840:CDS
AAGGATAGTATATGTGTGAT+CGG 0.630620 6_4:-77952779 Msa0997840:CDS
TGTGAAGATTCAAAGTGTGA+TGG 0.647633 6_4:-77952467 Msa0997840:CDS
ATCATTGGAAGGAAATGACA+AGG 0.661902 6_4:-77952798 Msa0997840:CDS
GTAGGTATGATGTCACATGA+TGG 0.671048 6_4:+77952205 None:intergenic
TGTGACAACAAGAAGTGTGA+TGG 0.671842 6_4:-77952419 Msa0997840:CDS
ACATGATGGAGCAAGTTTCG+GGG 0.686004 6_4:+77952219 None:intergenic
GGATAAGCGTTAGAACAAGG+TGG 0.701762 6_4:+77952272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAAATTAATTTTA+CGG + chr6_4:77953003-77953022 None:intergenic 0.0%
!!! TTTTTTAAAAATTAATTTTA+CGG + chr6_4:77953003-77953022 None:intergenic 0.0%
!! CTTAAACAAAAATTAATTAA+AGG + chr6_4:77952579-77952598 None:intergenic 10.0%
!!! AATTCTCATATTATTTTTAT+TGG + chr6_4:77952907-77952926 None:intergenic 10.0%
!!! ATTTTAAATTTTCAAGATTT+TGG + chr6_4:77952936-77952955 None:intergenic 10.0%
!!! AGTAAAAAATATTTTTTAGA+TGG - chr6_4:77953137-77953156 Msa0997840:intron 10.0%
!!! ATTTTATAGTTTGATTTTAA+TGG - chr6_4:77953455-77953474 Msa0997840:intron 10.0%
!! AATAAATAATGATATGATAT+TGG - chr6_4:77953569-77953588 Msa0997840:intron 10.0%
!! AAAGTATAAATATTAAGAAT+CGG + chr6_4:77953937-77953956 None:intergenic 10.0%
!! CTTAAACAAAAATTAATTAA+AGG + chr6_4:77952579-77952598 None:intergenic 10.0%
!!! AATTCTCATATTATTTTTAT+TGG + chr6_4:77952907-77952926 None:intergenic 10.0%
!!! ATTTTAAATTTTCAAGATTT+TGG + chr6_4:77952936-77952955 None:intergenic 10.0%
!!! AGTAAAAAATATTTTTTAGA+TGG - chr6_4:77953137-77953156 Msa0997840:intron 10.0%
!!! ATTTTATAGTTTGATTTTAA+TGG - chr6_4:77953455-77953474 Msa0997840:intron 10.0%
!! AATAAATAATGATATGATAT+TGG - chr6_4:77953569-77953588 Msa0997840:intron 10.0%
!! AAAGTATAAATATTAAGAAT+CGG + chr6_4:77953937-77953956 None:intergenic 10.0%
!!! TTTTCAAATTGTTGTATTAA+GGG + chr6_4:77952529-77952548 None:intergenic 15.0%
!!! TCTTTTTTCTTTCTTTTTAT+TGG - chr6_4:77952748-77952767 Msa0997840:CDS 15.0%
!! ATTTCATTTACTTAAGAAAA+TGG - chr6_4:77953060-77953079 Msa0997840:intron 15.0%
!!! TTTTTGCATTGTAAATTATA+CGG - chr6_4:77953212-77953231 Msa0997840:intron 15.0%
!! TTATTCAATGAATCTAAAAA+GGG + chr6_4:77953333-77953352 None:intergenic 15.0%
!! TTAAAAAAATGTCACTATTT+CGG + chr6_4:77953852-77953871 None:intergenic 15.0%
!!! TTTTTAACTATTCTTTACTT+TGG - chr6_4:77953865-77953884 Msa0997840:intron 15.0%
!!! TTTTCAAATTGTTGTATTAA+GGG + chr6_4:77952529-77952548 None:intergenic 15.0%
!!! TCTTTTTTCTTTCTTTTTAT+TGG - chr6_4:77952748-77952767 Msa0997840:CDS 15.0%
!! ATTTCATTTACTTAAGAAAA+TGG - chr6_4:77953060-77953079 Msa0997840:intron 15.0%
!!! TTTTTGCATTGTAAATTATA+CGG - chr6_4:77953212-77953231 Msa0997840:intron 15.0%
!! TTATTCAATGAATCTAAAAA+GGG + chr6_4:77953333-77953352 None:intergenic 15.0%
!! TTAAAAAAATGTCACTATTT+CGG + chr6_4:77953852-77953871 None:intergenic 15.0%
!!! TTTTTAACTATTCTTTACTT+TGG - chr6_4:77953865-77953884 Msa0997840:intron 15.0%
!! AATGAAAATACAGCAAAAAA+TGG - chr6_4:77952332-77952351 Msa0997840:CDS 20.0%
!! GTATGATTATTATATTACCT+TGG + chr6_4:77952422-77952441 None:intergenic 20.0%
!! ATATGCAAACAACAAAAAAA+GGG + chr6_4:77952449-77952468 None:intergenic 20.0%
!! AATATGCAAACAACAAAAAA+AGG + chr6_4:77952450-77952469 None:intergenic 20.0%
!!! GAAAAATTCCTCTAAAAAAA+GGG + chr6_4:77952505-77952524 None:intergenic 20.0%
!!! TGAAAAATTCCTCTAAAAAA+AGG + chr6_4:77952506-77952525 None:intergenic 20.0%
!!! CTTTTCAAATTGTTGTATTA+AGG + chr6_4:77952530-77952549 None:intergenic 20.0%
!! AAAAACATAATGTGAATATG+AGG - chr6_4:77952808-77952827 Msa0997840:CDS 20.0%
!!! ATATAAGTTAGCATTTTACA+AGG + chr6_4:77952862-77952881 None:intergenic 20.0%
!!! GTTTATTAACTTGTTTTACA+AGG + chr6_4:77952885-77952904 None:intergenic 20.0%
!! TAATTCTTGTAAGGAATTAA+AGG + chr6_4:77952974-77952993 None:intergenic 20.0%
!!! TTTTTACTTATAATTGTGAC+CGG + chr6_4:77953125-77953144 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr6_4:77953269-77953288 Msa0997840:intron 20.0%
!! GTTATTCAATGAATCTAAAA+AGG + chr6_4:77953334-77953353 None:intergenic 20.0%
!! TATTGAATAACTGATGTATT+TGG + chr6_4:77953381-77953400 None:intergenic 20.0%
!! ACAAAGAAAAATGGTAAATA+AGG - chr6_4:77953635-77953654 Msa0997840:intron 20.0%
!!! ATTTTAGACTTTCACATTTT+GGG + chr6_4:77954307-77954326 None:intergenic 20.0%
!! AATGAAAATACAGCAAAAAA+TGG - chr6_4:77952332-77952351 Msa0997840:CDS 20.0%
!! GTATGATTATTATATTACCT+TGG + chr6_4:77952422-77952441 None:intergenic 20.0%
!! ATATGCAAACAACAAAAAAA+GGG + chr6_4:77952449-77952468 None:intergenic 20.0%
!! AATATGCAAACAACAAAAAA+AGG + chr6_4:77952450-77952469 None:intergenic 20.0%
!!! GAAAAATTCCTCTAAAAAAA+GGG + chr6_4:77952505-77952524 None:intergenic 20.0%
!!! TGAAAAATTCCTCTAAAAAA+AGG + chr6_4:77952506-77952525 None:intergenic 20.0%
!!! CTTTTCAAATTGTTGTATTA+AGG + chr6_4:77952530-77952549 None:intergenic 20.0%
!! AAAAACATAATGTGAATATG+AGG - chr6_4:77952808-77952827 Msa0997840:CDS 20.0%
!!! ATATAAGTTAGCATTTTACA+AGG + chr6_4:77952862-77952881 None:intergenic 20.0%
!!! GTTTATTAACTTGTTTTACA+AGG + chr6_4:77952885-77952904 None:intergenic 20.0%
!! TAATTCTTGTAAGGAATTAA+AGG + chr6_4:77952974-77952993 None:intergenic 20.0%
!!! TTTTTACTTATAATTGTGAC+CGG + chr6_4:77953125-77953144 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr6_4:77953269-77953288 Msa0997840:intron 20.0%
!! GTTATTCAATGAATCTAAAA+AGG + chr6_4:77953334-77953353 None:intergenic 20.0%
!! TATTGAATAACTGATGTATT+TGG + chr6_4:77953381-77953400 None:intergenic 20.0%
!! ACAAAGAAAAATGGTAAATA+AGG - chr6_4:77953635-77953654 Msa0997840:intron 20.0%
!!! ATTTTAGACTTTCACATTTT+GGG + chr6_4:77954307-77954326 None:intergenic 20.0%
!!! AATTTTGAAACAAACAGAAG+TGG + chr6_4:77952221-77952240 None:intergenic 25.0%
! AATGGTTATAAAGATGCAAA+TGG - chr6_4:77952350-77952369 Msa0997840:CDS 25.0%
!!! AATTTTTGTTTAAGCATGCT+AGG - chr6_4:77952585-77952604 Msa0997840:CDS 25.0%
!!! ATTTTTGTTTAAGCATGCTA+GGG - chr6_4:77952586-77952605 Msa0997840:CDS 25.0%
! CCTCATATACATGATATATT+AGG + chr6_4:77952612-77952631 None:intergenic 25.0%
! CCTAATATATCATGTATATG+AGG - chr6_4:77952609-77952628 Msa0997840:CDS 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr6_4:77953268-77953287 Msa0997840:intron 25.0%
!! ACAACTAATAAAGATGGTTT+TGG + chr6_4:77953499-77953518 None:intergenic 25.0%
! CTAACTACAACTAATAAAGA+TGG + chr6_4:77953505-77953524 None:intergenic 25.0%
! CATCTTTATTAGTTGTAGTT+AGG - chr6_4:77953503-77953522 Msa0997840:intron 25.0%
! AGTGTTAAGACAAAGAAAAA+TGG - chr6_4:77953626-77953645 Msa0997840:intron 25.0%
!!! ACCCAAGATTTTTTTTCATT+AGG - chr6_4:77953810-77953829 Msa0997840:intron 25.0%
! CCCTAATGAAAAAAAATCTT+GGG + chr6_4:77953814-77953833 None:intergenic 25.0%
!!! CCCAAGATTTTTTTTCATTA+GGG - chr6_4:77953811-77953830 Msa0997840:intron 25.0%
! AGAAATAGTGATCAAAATAG+AGG + chr6_4:77953894-77953913 None:intergenic 25.0%
!! TACTTTAGAGACCATTATTT+CGG - chr6_4:77953951-77953970 Msa0997840:intron 25.0%
! ATAAAAATGGGTCAATATCT+TGG + chr6_4:77953996-77954015 None:intergenic 25.0%
!!! AGATATTGACCCATTTTTAT+AGG - chr6_4:77953996-77954015 Msa0997840:intron 25.0%
! GAAGTTACACCTATAAAAAT+GGG + chr6_4:77954008-77954027 None:intergenic 25.0%
! TGAAGTTACACCTATAAAAA+TGG + chr6_4:77954009-77954028 None:intergenic 25.0%
!! CATTTTAGACTTTCACATTT+TGG + chr6_4:77954308-77954327 None:intergenic 25.0%
! TCATAAACAACCTTACAATA+AGG + chr6_4:77954584-77954603 None:intergenic 25.0%
!!! AATTTTGAAACAAACAGAAG+TGG + chr6_4:77952221-77952240 None:intergenic 25.0%
! AATGGTTATAAAGATGCAAA+TGG - chr6_4:77952350-77952369 Msa0997840:CDS 25.0%
!!! AATTTTTGTTTAAGCATGCT+AGG - chr6_4:77952585-77952604 Msa0997840:CDS 25.0%
!!! ATTTTTGTTTAAGCATGCTA+GGG - chr6_4:77952586-77952605 Msa0997840:CDS 25.0%
! CCTCATATACATGATATATT+AGG + chr6_4:77952612-77952631 None:intergenic 25.0%
! CCTAATATATCATGTATATG+AGG - chr6_4:77952609-77952628 Msa0997840:CDS 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr6_4:77953268-77953287 Msa0997840:intron 25.0%
!! ACAACTAATAAAGATGGTTT+TGG + chr6_4:77953499-77953518 None:intergenic 25.0%
! CTAACTACAACTAATAAAGA+TGG + chr6_4:77953505-77953524 None:intergenic 25.0%
! CATCTTTATTAGTTGTAGTT+AGG - chr6_4:77953503-77953522 Msa0997840:intron 25.0%
! AGTGTTAAGACAAAGAAAAA+TGG - chr6_4:77953626-77953645 Msa0997840:intron 25.0%
!!! ACCCAAGATTTTTTTTCATT+AGG - chr6_4:77953810-77953829 Msa0997840:intron 25.0%
! CCCTAATGAAAAAAAATCTT+GGG + chr6_4:77953814-77953833 None:intergenic 25.0%
!!! CCCAAGATTTTTTTTCATTA+GGG - chr6_4:77953811-77953830 Msa0997840:intron 25.0%
! AGAAATAGTGATCAAAATAG+AGG + chr6_4:77953894-77953913 None:intergenic 25.0%
!! TACTTTAGAGACCATTATTT+CGG - chr6_4:77953951-77953970 Msa0997840:intron 25.0%
! ATAAAAATGGGTCAATATCT+TGG + chr6_4:77953996-77954015 None:intergenic 25.0%
!!! AGATATTGACCCATTTTTAT+AGG - chr6_4:77953996-77954015 Msa0997840:intron 25.0%
! GAAGTTACACCTATAAAAAT+GGG + chr6_4:77954008-77954027 None:intergenic 25.0%
! TGAAGTTACACCTATAAAAA+TGG + chr6_4:77954009-77954028 None:intergenic 25.0%
!! CATTTTAGACTTTCACATTT+TGG + chr6_4:77954308-77954327 None:intergenic 25.0%
! TCATAAACAACCTTACAATA+AGG + chr6_4:77954584-77954603 None:intergenic 25.0%
TCAAAATTAAGCAAGCATGA+AGG - chr6_4:77952233-77952252 Msa0997840:CDS 30.0%
CAAACAACAAAAAAAGGGTT+TGG + chr6_4:77952444-77952463 None:intergenic 30.0%
CTAAAAAAAGGGTGAACATT+TGG + chr6_4:77952494-77952513 None:intergenic 30.0%
!!! AATGTTCACCCTTTTTTTAG+AGG - chr6_4:77952494-77952513 Msa0997840:CDS 30.0%
CGGAAAATCTAATTCTTGTA+AGG + chr6_4:77952983-77953002 None:intergenic 30.0%
! CTATCTTAAAGTACCATATC+CGG - chr6_4:77953103-77953122 Msa0997840:intron 30.0%
CATTGAATAACTGATGTATC+TGG - chr6_4:77953343-77953362 Msa0997840:intron 30.0%
TTTCTTATAATAACCACGAG+AGG - chr6_4:77953420-77953439 Msa0997840:intron 30.0%
TTCTTATAATAACCACGAGA+GGG - chr6_4:77953421-77953440 Msa0997840:intron 30.0%
GCCCTAATGAAAAAAAATCT+TGG + chr6_4:77953815-77953834 None:intergenic 30.0%
GTAAATAGTTGCCGAAATAA+TGG + chr6_4:77953965-77953984 None:intergenic 30.0%
AAGGATAGTATATGTGTGAT+CGG - chr6_4:77954050-77954069 Msa0997840:intron 30.0%
GGAAGAAGAAAAGAAAAAAG+AGG - chr6_4:77954184-77954203 Msa0997840:intron 30.0%
TAAACAACCTTACAATAAGG+TGG + chr6_4:77954581-77954600 None:intergenic 30.0%
TCAAAATTAAGCAAGCATGA+AGG - chr6_4:77952233-77952252 Msa0997840:CDS 30.0%
CAAACAACAAAAAAAGGGTT+TGG + chr6_4:77952444-77952463 None:intergenic 30.0%
CTAAAAAAAGGGTGAACATT+TGG + chr6_4:77952494-77952513 None:intergenic 30.0%
!!! AATGTTCACCCTTTTTTTAG+AGG - chr6_4:77952494-77952513 Msa0997840:CDS 30.0%
CGGAAAATCTAATTCTTGTA+AGG + chr6_4:77952983-77953002 None:intergenic 30.0%
! CTATCTTAAAGTACCATATC+CGG - chr6_4:77953103-77953122 Msa0997840:intron 30.0%
CATTGAATAACTGATGTATC+TGG - chr6_4:77953343-77953362 Msa0997840:intron 30.0%
TTTCTTATAATAACCACGAG+AGG - chr6_4:77953420-77953439 Msa0997840:intron 30.0%
TTCTTATAATAACCACGAGA+GGG - chr6_4:77953421-77953440 Msa0997840:intron 30.0%
GCCCTAATGAAAAAAAATCT+TGG + chr6_4:77953815-77953834 None:intergenic 30.0%
GTAAATAGTTGCCGAAATAA+TGG + chr6_4:77953965-77953984 None:intergenic 30.0%
AAGGATAGTATATGTGTGAT+CGG - chr6_4:77954050-77954069 Msa0997840:intron 30.0%
GGAAGAAGAAAAGAAAAAAG+AGG - chr6_4:77954184-77954203 Msa0997840:intron 30.0%
TAAACAACCTTACAATAAGG+TGG + chr6_4:77954581-77954600 None:intergenic 30.0%
TCTAACTCTCATCAACATGT+TGG - chr6_4:77952675-77952694 Msa0997840:CDS 35.0%
CTTATAATTGTGACCGGATA+TGG + chr6_4:77953119-77953138 None:intergenic 35.0%
AAATGCTAACAAGTGTCCTA+AGG - chr6_4:77953161-77953180 Msa0997840:intron 35.0%
AATGCTAACAAGTGTCCTAA+GGG - chr6_4:77953162-77953181 Msa0997840:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr6_4:77953292-77953311 Msa0997840:intron 35.0%
TCTTATAATAACCACGAGAG+GGG - chr6_4:77953422-77953441 Msa0997840:intron 35.0%
GTGTACATGATTCATTGTGA+TGG - chr6_4:77953770-77953789 Msa0997840:intron 35.0%
AGGTGTAACTTCAGTATCAT+TGG - chr6_4:77954016-77954035 Msa0997840:intron 35.0%
GTAACTTCAGTATCATTGGA+AGG - chr6_4:77954020-77954039 Msa0997840:intron 35.0%
ATCATTGGAAGGAAATGACA+AGG - chr6_4:77954031-77954050 Msa0997840:intron 35.0%
ACCAGATGCAGAAAAGAAAA+AGG - chr6_4:77954163-77954182 Msa0997840:intron 35.0%
! TCCTTTTTCTTTTCTGCATC+TGG + chr6_4:77954167-77954186 None:intergenic 35.0%
! TGTGAAAGTCTAAAATGCGA+TGG - chr6_4:77954311-77954330 Msa0997840:intron 35.0%
! GTGAAAGTCTAAAATGCGAT+GGG - chr6_4:77954312-77954331 Msa0997840:intron 35.0%
TGTGAAGATTCAAAGTGTGA+TGG - chr6_4:77954362-77954381 Msa0997840:intron 35.0%
AAAGTGTGATGGTAAGTGTA+AGG - chr6_4:77954373-77954392 Msa0997840:intron 35.0%
AAGTGTGATGGTAAGTGTAA+GGG - chr6_4:77954374-77954393 Msa0997840:intron 35.0%
GATATGGAGCATAGCATTTA+GGG + chr6_4:77954529-77954548 None:intergenic 35.0%
TCTAACTCTCATCAACATGT+TGG - chr6_4:77952675-77952694 Msa0997840:CDS 35.0%
CTTATAATTGTGACCGGATA+TGG + chr6_4:77953119-77953138 None:intergenic 35.0%
AAATGCTAACAAGTGTCCTA+AGG - chr6_4:77953161-77953180 Msa0997840:intron 35.0%
AATGCTAACAAGTGTCCTAA+GGG - chr6_4:77953162-77953181 Msa0997840:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr6_4:77953292-77953311 Msa0997840:intron 35.0%
TCTTATAATAACCACGAGAG+GGG - chr6_4:77953422-77953441 Msa0997840:intron 35.0%
GTGTACATGATTCATTGTGA+TGG - chr6_4:77953770-77953789 Msa0997840:intron 35.0%
AGGTGTAACTTCAGTATCAT+TGG - chr6_4:77954016-77954035 Msa0997840:intron 35.0%
GTAACTTCAGTATCATTGGA+AGG - chr6_4:77954020-77954039 Msa0997840:intron 35.0%
ATCATTGGAAGGAAATGACA+AGG - chr6_4:77954031-77954050 Msa0997840:intron 35.0%
ACCAGATGCAGAAAAGAAAA+AGG - chr6_4:77954163-77954182 Msa0997840:intron 35.0%
! TCCTTTTTCTTTTCTGCATC+TGG + chr6_4:77954167-77954186 None:intergenic 35.0%
! TGTGAAAGTCTAAAATGCGA+TGG - chr6_4:77954311-77954330 Msa0997840:intron 35.0%
! GTGAAAGTCTAAAATGCGAT+GGG - chr6_4:77954312-77954331 Msa0997840:intron 35.0%
TGTGAAGATTCAAAGTGTGA+TGG - chr6_4:77954362-77954381 Msa0997840:intron 35.0%
AAAGTGTGATGGTAAGTGTA+AGG - chr6_4:77954373-77954392 Msa0997840:intron 35.0%
AAGTGTGATGGTAAGTGTAA+GGG - chr6_4:77954374-77954393 Msa0997840:intron 35.0%
GATATGGAGCATAGCATTTA+GGG + chr6_4:77954529-77954548 None:intergenic 35.0%
GATGCTTAAACAATGCCCTT+AGG + chr6_4:77953180-77953199 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr6_4:77953291-77953310 Msa0997840:intron 40.0%
TTACGCACTCGCATATTAGT+AGG - chr6_4:77953695-77953714 Msa0997840:intron 40.0%
GCTCAAATCAGTTGTCTTAG+TGG - chr6_4:77953720-77953739 Msa0997840:intron 40.0%
CACAAGTGTAGATCTCTTGT+GGG - chr6_4:77953743-77953762 Msa0997840:intron 40.0%
ATTGTGATGGTACACAGTCT+GGG - chr6_4:77953783-77953802 Msa0997840:intron 40.0%
TAGTGTCACCATACTTAGTG+TGG - chr6_4:77954124-77954143 Msa0997840:intron 40.0%
! TGTCACGACTTGAGTTGTAA+TGG - chr6_4:77954266-77954285 Msa0997840:intron 40.0%
! TGTGACAACAAGAAGTGTGA+TGG - chr6_4:77954410-77954429 Msa0997840:intron 40.0%
CATTGAGGACATTGTTGGAT+GGG + chr6_4:77954497-77954516 None:intergenic 40.0%
CGATATGGAGCATAGCATTT+AGG + chr6_4:77954530-77954549 None:intergenic 40.0%
CGCTTATCCACCTTATTGTA+AGG - chr6_4:77954571-77954590 Msa0997840:intron 40.0%
! TCACATGATGGAGCAAGTTT+CGG + chr6_4:77954615-77954634 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG + chr6_4:77953180-77953199 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr6_4:77953291-77953310 Msa0997840:intron 40.0%
TTACGCACTCGCATATTAGT+AGG - chr6_4:77953695-77953714 Msa0997840:intron 40.0%
GCTCAAATCAGTTGTCTTAG+TGG - chr6_4:77953720-77953739 Msa0997840:intron 40.0%
CACAAGTGTAGATCTCTTGT+GGG - chr6_4:77953743-77953762 Msa0997840:intron 40.0%
ATTGTGATGGTACACAGTCT+GGG - chr6_4:77953783-77953802 Msa0997840:intron 40.0%
TAGTGTCACCATACTTAGTG+TGG - chr6_4:77954124-77954143 Msa0997840:intron 40.0%
! TGTCACGACTTGAGTTGTAA+TGG - chr6_4:77954266-77954285 Msa0997840:intron 40.0%
! TGTGACAACAAGAAGTGTGA+TGG - chr6_4:77954410-77954429 Msa0997840:intron 40.0%
CATTGAGGACATTGTTGGAT+GGG + chr6_4:77954497-77954516 None:intergenic 40.0%
CGATATGGAGCATAGCATTT+AGG + chr6_4:77954530-77954549 None:intergenic 40.0%
CGCTTATCCACCTTATTGTA+AGG - chr6_4:77954571-77954590 Msa0997840:intron 40.0%
! TCACATGATGGAGCAAGTTT+CGG + chr6_4:77954615-77954634 None:intergenic 40.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr6_4:77953297-77953316 None:intergenic 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr6_4:77953309-77953328 None:intergenic 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr6_4:77953310-77953329 None:intergenic 45.0%
GCACAAGTGTAGATCTCTTG+TGG - chr6_4:77953742-77953761 Msa0997840:intron 45.0%
CATTGTGATGGTACACAGTC+TGG - chr6_4:77953782-77953801 Msa0997840:intron 45.0%
! ATGTGTGATCGGTGATGATG+TGG - chr6_4:77954061-77954080 Msa0997840:intron 45.0%
CACCATACTTAGTGTGGAAG+AGG - chr6_4:77954130-77954149 Msa0997840:intron 45.0%
CACCTCTTCCACACTAAGTA+TGG + chr6_4:77954135-77954154 None:intergenic 45.0%
! AGCATGTCGTAGTGTTTTGC+AGG - chr6_4:77954229-77954248 Msa0997840:intron 45.0%
! GCATGTCGTAGTGTTTTGCA+GGG - chr6_4:77954230-77954249 Msa0997840:intron 45.0%
CCATTGAGGACATTGTTGGA+TGG + chr6_4:77954498-77954517 None:intergenic 45.0%
CCATCCAACAATGTCCTCAA+TGG - chr6_4:77954495-77954514 Msa0997840:intron 45.0%
TGCACCATTGAGGACATTGT+TGG + chr6_4:77954502-77954521 None:intergenic 45.0%
CAAGGTGGATAAGGTCGATA+TGG + chr6_4:77954545-77954564 None:intergenic 45.0%
GCGTTAGAACAAGGTGGATA+AGG + chr6_4:77954554-77954573 None:intergenic 45.0%
GGATAAGCGTTAGAACAAGG+TGG + chr6_4:77954560-77954579 None:intergenic 45.0%
GGTGGATAAGCGTTAGAACA+AGG + chr6_4:77954563-77954582 None:intergenic 45.0%
! ACATGATGGAGCAAGTTTCG+GGG + chr6_4:77954613-77954632 None:intergenic 45.0%
! CACATGATGGAGCAAGTTTC+GGG + chr6_4:77954614-77954633 None:intergenic 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr6_4:77953297-77953316 None:intergenic 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr6_4:77953309-77953328 None:intergenic 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr6_4:77953310-77953329 None:intergenic 45.0%
GCACAAGTGTAGATCTCTTG+TGG - chr6_4:77953742-77953761 Msa0997840:intron 45.0%
CATTGTGATGGTACACAGTC+TGG - chr6_4:77953782-77953801 Msa0997840:intron 45.0%
! ATGTGTGATCGGTGATGATG+TGG - chr6_4:77954061-77954080 Msa0997840:intron 45.0%
CACCATACTTAGTGTGGAAG+AGG - chr6_4:77954130-77954149 Msa0997840:intron 45.0%
CACCTCTTCCACACTAAGTA+TGG + chr6_4:77954135-77954154 None:intergenic 45.0%
! AGCATGTCGTAGTGTTTTGC+AGG - chr6_4:77954229-77954248 Msa0997840:intron 45.0%
! GCATGTCGTAGTGTTTTGCA+GGG - chr6_4:77954230-77954249 Msa0997840:intron 45.0%
CCATTGAGGACATTGTTGGA+TGG + chr6_4:77954498-77954517 None:intergenic 45.0%
CCATCCAACAATGTCCTCAA+TGG - chr6_4:77954495-77954514 Msa0997840:intron 45.0%
TGCACCATTGAGGACATTGT+TGG + chr6_4:77954502-77954521 None:intergenic 45.0%
CAAGGTGGATAAGGTCGATA+TGG + chr6_4:77954545-77954564 None:intergenic 45.0%
GCGTTAGAACAAGGTGGATA+AGG + chr6_4:77954554-77954573 None:intergenic 45.0%
GGATAAGCGTTAGAACAAGG+TGG + chr6_4:77954560-77954579 None:intergenic 45.0%
GGTGGATAAGCGTTAGAACA+AGG + chr6_4:77954563-77954582 None:intergenic 45.0%
! ACATGATGGAGCAAGTTTCG+GGG + chr6_4:77954613-77954632 None:intergenic 45.0%
! CACATGATGGAGCAAGTTTC+GGG + chr6_4:77954614-77954633 None:intergenic 45.0%
!! GACCTCAGCAGCAGTTTTGA+GGG + chr6_4:77952400-77952419 None:intergenic 50.0%
AAAACTGCTGCTGAGGTCCA+AGG - chr6_4:77952402-77952421 Msa0997840:CDS 50.0%
TAACACATACTCCCCTCTCG+TGG + chr6_4:77953436-77953455 None:intergenic 50.0%
GTAGGTGTAGGAGGCTTCTT+AGG + chr6_4:77954455-77954474 None:intergenic 50.0%
CATTGTTGGATGGGTGGTGT+AGG + chr6_4:77954488-77954507 None:intergenic 50.0%
TGAGGACATTGTTGGATGGG+TGG + chr6_4:77954494-77954513 None:intergenic 50.0%
TTAGGGCATGTGCACCATTG+AGG + chr6_4:77954512-77954531 None:intergenic 50.0%
!! GACCTCAGCAGCAGTTTTGA+GGG + chr6_4:77952400-77952419 None:intergenic 50.0%
AAAACTGCTGCTGAGGTCCA+AGG - chr6_4:77952402-77952421 Msa0997840:CDS 50.0%
TAACACATACTCCCCTCTCG+TGG + chr6_4:77953436-77953455 None:intergenic 50.0%
GTAGGTGTAGGAGGCTTCTT+AGG + chr6_4:77954455-77954474 None:intergenic 50.0%
CATTGTTGGATGGGTGGTGT+AGG + chr6_4:77954488-77954507 None:intergenic 50.0%
TGAGGACATTGTTGGATGGG+TGG + chr6_4:77954494-77954513 None:intergenic 50.0%
TTAGGGCATGTGCACCATTG+AGG + chr6_4:77954512-77954531 None:intergenic 50.0%
AGCCCTCAAAACTGCTGCTG+AGG - chr6_4:77952395-77952414 Msa0997840:CDS 55.0%
! GGACCTCAGCAGCAGTTTTG+AGG + chr6_4:77952401-77952420 None:intergenic 55.0%
GGTGTAGGAGGCTTCTTAGG+AGG + chr6_4:77954452-77954471 None:intergenic 55.0%
GGCTTCTCAGTAGGTGTAGG+AGG + chr6_4:77954464-77954483 None:intergenic 55.0%
GGAGGCTTCTCAGTAGGTGT+AGG + chr6_4:77954467-77954486 None:intergenic 55.0%
GGTGTAGGAGGCTTCTCAGT+AGG + chr6_4:77954473-77954492 None:intergenic 55.0%
TGTTGGATGGGTGGTGTAGG+AGG + chr6_4:77954485-77954504 None:intergenic 55.0%
AGCCCTCAAAACTGCTGCTG+AGG - chr6_4:77952395-77952414 Msa0997840:CDS 55.0%
! GGACCTCAGCAGCAGTTTTG+AGG + chr6_4:77952401-77952420 None:intergenic 55.0%
GGTGTAGGAGGCTTCTTAGG+AGG + chr6_4:77954452-77954471 None:intergenic 55.0%
GGCTTCTCAGTAGGTGTAGG+AGG + chr6_4:77954464-77954483 None:intergenic 55.0%
GGAGGCTTCTCAGTAGGTGT+AGG + chr6_4:77954467-77954486 None:intergenic 55.0%
GGTGTAGGAGGCTTCTCAGT+AGG + chr6_4:77954473-77954492 None:intergenic 55.0%
TGTTGGATGGGTGGTGTAGG+AGG + chr6_4:77954485-77954504 None:intergenic 55.0%
! GGAGGCTTCTTAGGAGGTGC+AGG + chr6_4:77954446-77954465 None:intergenic 60.0%
! GGAGGCTTCTTAGGAGGTGC+AGG + chr6_4:77954446-77954465 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 77952217 77954634 77952217 ID=Msa0997840;Name=Msa0997840
chr6_4 mRNA 77952217 77954634 77952217 ID=Msa0997840-mRNA-1;Parent=Msa0997840;Name=Msa0997840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=32|1|0.66|1|0.5|0.33|3|0|233
chr6_4 exon 77952217 77952833 77952217 ID=Msa0997840-mRNA-1:exon:14733;Parent=Msa0997840-mRNA-1
chr6_4 exon 77954428 77954506 77954428 ID=Msa0997840-mRNA-1:exon:14732;Parent=Msa0997840-mRNA-1
chr6_4 exon 77954597 77954634 77954597 ID=Msa0997840-mRNA-1:exon:14731;Parent=Msa0997840-mRNA-1
chr6_4 five_prime_UTR 77954603 77954634 77954603 ID=Msa0997840-mRNA-1:five_prime_utr;Parent=Msa0997840-mRNA-1
chr6_4 CDS 77954597 77954602 77954597 ID=Msa0997840-mRNA-1:cds;Parent=Msa0997840-mRNA-1
chr6_4 CDS 77954428 77954506 77954428 ID=Msa0997840-mRNA-1:cds;Parent=Msa0997840-mRNA-1
chr6_4 CDS 77952217 77952833 77952217 ID=Msa0997840-mRNA-1:cds;Parent=Msa0997840-mRNA-1
Gene Sequence

>Msa0997840

ATGAAGCAAAAAATGGTTATAAAGATGCAAATGGACTGCGATAAATGCAGAAACAAAGCCCTCAAAACTGCTGCTGAGGTCCAAGGTGTAACTTCAGTATCATTGGAAGGAAATGACAAGGATAGTATATGTGTGATCGGTGATGATGTGGACACAATTTGTTTAGCAAATCAGCTAAAGAAGAAGTTCAATAGTGTCACCATACTTAGTGTGGAAGAGGTGAAAAAGAAACCAGATGCAGAAAAGAAAAAGGAAGAAGAAAAGAAAAAAGAGGAAGAAAAGAAAAAGATGATAGAAGCATGTCGTAGTGTTTTGCAGGGTACTTGCATCAAGTGTCACGACTTGAGTTGTAATGGAAAATGTAATAAATGCCCAAAATGTGAAAGTCTAAAATGCGATGGGAAACATTGTGTCACAATTTGCTTTAAATGTGAAGATTCAAAGTGTGATGGTAAGTGTAAGGGTAACTGCTGCAATTGTGACAACAAGAAGTGTGATGGTTGTACACTTCCTGCACCTCCTAAGAAGCCTCCTACACCTACTGAGAAGCCTCCTACACCACCCATCCAACAATGTCCTCAATGGTGCACATGCCCTAAATGCTATGCTCCATATCGACCTTATCCACCTTGTTCTAACGCTTATCCACCTTATTGTAAGGTTGTTTATGAACAAAACCCCGAAACTTGCTCCATCATGTGA

Protein sequence

>Msa0997840

MKQKMVIKMQMDCDKCRNKALKTAAEVQGVTSVSLEGNDKDSICVIGDDVDTICLANQLKKKFNSVTILSVEEVKKKPDAEKKKEEEKKKEEEKKKMIEACRSVLQGTCIKCHDLSCNGKCNKCPKCESLKCDGKHCVTICFKCEDSKCDGKCKGNCCNCDNKKCDGCTLPAPPKKPPTPTEKPPTPPIQQCPQWCTCPKCYAPYRPYPPCSNAYPPYCKVVYEQNPETCSIM*