AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0327890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327890 MtrunA17_Chr2g0309331 98.266 346 2 4 8 351 1 344 0.0 704
Msa0327890 MtrunA17_Chr8g0346001 75.148 169 31 2 12 170 10 177 8.43e-90 276
Msa0327890 MtrunA17_Chr4g0017921 71.667 180 45 4 17 194 8 183 7.46e-89 271
Msa0327890 MtrunA17_Chr5g0405211 56.327 245 95 5 12 246 3 245 2.07e-88 270
Msa0327890 MtrunA17_Chr4g0056541 48.867 309 114 10 17 299 7 297 2.42e-82 254
Msa0327890 MtrunA17_Chr8g0372121 47.751 289 120 6 14 300 3 262 9.47e-82 251
Msa0327890 MtrunA17_Chr4g0018391 74.194 155 38 2 17 171 7 159 2.12e-81 251
Msa0327890 MtrunA17_Chr5g0398971 69.935 153 46 0 17 169 7 159 1.08e-79 247
Msa0327890 MtrunA17_Chr1g0200561 42.450 351 160 8 14 341 16 347 3.31e-76 238
Msa0327890 MtrunA17_Chr2g0309891 54.487 156 67 3 15 168 4 157 8.06e-59 193
Msa0327890 MtrunA17_Chr6g0481091 57.051 156 62 4 15 168 4 156 4.62e-58 188
Msa0327890 MtrunA17_Chr3g0091921 53.846 169 71 3 3 168 2 166 1.08e-57 189
Msa0327890 MtrunA17_Chr2g0318101 41.892 222 112 4 11 218 9 227 1.19e-57 191
Msa0327890 MtrunA17_Chr4g0042561 46.970 198 95 4 9 201 1 193 7.84e-57 186
Msa0327890 MtrunA17_Chr3g0139331 50.602 166 77 3 11 175 5 166 9.74e-57 188
Msa0327890 MtrunA17_Chr2g0316971 55.346 159 64 3 17 171 23 178 1.24e-56 189
Msa0327890 MtrunA17_Chr6g0484441 53.049 164 72 3 14 177 2 160 2.09e-56 186
Msa0327890 MtrunA17_Chr5g0417791 49.206 189 85 5 15 198 1 183 2.47e-56 184
Msa0327890 MtrunA17_Chr1g0147421 53.659 164 70 4 14 175 24 183 4.80e-56 186
Msa0327890 MtrunA17_Chr3g0109821 53.846 156 68 3 15 168 4 157 1.28e-55 192
Msa0327890 MtrunA17_Chr4g0060931 52.761 163 70 3 14 173 14 172 1.57e-55 185
Msa0327890 MtrunA17_Chr6g0461661 53.125 160 68 3 15 170 16 172 2.60e-54 182
Msa0327890 MtrunA17_Chr5g0433781 52.903 155 70 3 15 168 4 156 2.88e-54 188
Msa0327890 MtrunA17_Chr7g0253011 53.750 160 65 3 15 168 15 171 3.54e-54 182
Msa0327890 MtrunA17_Chr3g0124761 51.220 164 71 3 12 171 2 160 4.28e-54 179
Msa0327890 MtrunA17_Chr7g0252971 47.368 171 74 3 11 168 2 169 4.69e-54 181
Msa0327890 MtrunA17_Chr6g0453451 50.588 170 77 3 7 173 10 175 5.99e-54 180
Msa0327890 MtrunA17_Chr2g0318081 50.595 168 75 4 13 179 12 172 2.94e-53 179
Msa0327890 MtrunA17_Chr7g0214071 46.073 191 89 5 8 197 6 183 7.14e-53 175
Msa0327890 MtrunA17_Chr3g0130731 51.553 161 69 3 13 169 3 158 1.21e-52 176
Msa0327890 MtrunA17_Chr8g0359921 50.296 169 74 4 14 179 11 172 7.38e-52 175
Msa0327890 MtrunA17_Chr5g0400461 37.456 283 137 9 13 268 2 271 1.68e-51 174
Msa0327890 MtrunA17_Chr2g0312321 50.955 157 69 4 14 168 8 158 4.06e-51 172
Msa0327890 MtrunA17_Chr8g0384721 48.837 172 76 4 9 175 1 165 4.90e-51 171
Msa0327890 MtrunA17_Chr4g0047841 43.889 180 73 3 17 171 15 191 1.33e-50 172
Msa0327890 MtrunA17_Chr7g0263931 47.126 174 83 3 14 181 8 178 2.16e-50 171
Msa0327890 MtrunA17_Chr6g0453131 45.029 171 81 3 19 179 17 184 2.17e-50 172
Msa0327890 MtrunA17_Chr7g0217721 42.601 223 105 5 20 223 22 240 3.78e-50 171
Msa0327890 MtrunA17_Chr1g0183741 48.503 167 79 4 16 181 9 169 9.24e-50 167
Msa0327890 MtrunA17_Chr2g0326361 45.550 191 93 4 16 198 13 200 2.14e-49 168
Msa0327890 MtrunA17_Chr3g0144271 47.668 193 89 6 14 200 20 206 5.10e-49 170
Msa0327890 MtrunA17_Chr4g0054791 48.824 170 76 5 9 173 1 164 1.29e-48 166
Msa0327890 MtrunA17_Chr7g0217711 60.156 128 47 2 20 147 22 145 2.74e-48 160
Msa0327890 MtrunA17_Chr7g0261411 51.316 152 67 4 16 166 9 154 3.37e-48 164
Msa0327890 MtrunA17_Chr8g0361731 46.012 163 74 3 19 170 16 175 5.06e-48 166
Msa0327890 MtrunA17_Chr3g0130101 50.980 153 70 4 19 169 9 158 5.96e-48 165
Msa0327890 MtrunA17_Chr8g0364791 41.743 218 117 6 19 230 8 221 1.03e-47 167
Msa0327890 MtrunA17_Chr1g0197351 48.876 178 78 4 16 182 41 216 1.45e-47 167
Msa0327890 MtrunA17_Chr5g0417001 42.328 189 94 4 16 194 13 196 1.94e-47 165
Msa0327890 MtrunA17_Chr5g0428991 51.613 155 72 3 17 170 25 177 1.27e-46 167
Msa0327890 MtrunA17_Chr1g0201021 47.682 151 76 3 19 168 21 169 1.66e-45 163
Msa0327890 MtrunA17_Chr8g0384201 40.541 222 114 6 19 230 8 221 2.24e-45 161
Msa0327890 MtrunA17_Chr3g0128111 47.368 152 77 3 20 170 45 194 1.44e-44 153
Msa0327890 MtrunA17_Chr3g0128151 48.718 156 77 3 16 170 21 174 2.04e-44 160
Msa0327890 MtrunA17_Chr3g0092671 46.104 154 80 3 19 171 7 158 5.09e-44 159
Msa0327890 MtrunA17_Chr4g0076731 47.712 153 76 2 16 168 53 201 5.53e-44 157
Msa0327890 MtrunA17_Chr1g0197361 44.706 170 86 4 19 182 10 177 3.28e-43 157
Msa0327890 MtrunA17_Chr2g0311651 43.605 172 79 5 13 168 17 186 2.27e-42 149
Msa0327890 MtrunA17_Chr2g0311661 42.541 181 86 6 17 181 20 198 5.39e-42 148
Msa0327890 MtrunA17_Chr4g0038751 46.429 168 81 5 19 184 17 177 7.45e-42 147
Msa0327890 MtrunA17_Chr5g0442771 40.782 179 91 4 16 182 17 192 2.00e-41 147
Msa0327890 MtrunA17_Chr8g0385991 40.212 189 101 4 13 194 10 193 1.18e-40 142
Msa0327890 MtrunA17_Chr3g0131911 43.860 171 81 5 12 172 9 174 4.21e-38 136
Msa0327890 MtrunA17_Chr2g0321631 38.298 188 101 5 18 194 5 188 1.72e-36 132
Msa0327890 MtrunA17_Chr4g0026141 37.037 189 104 6 14 190 2 187 5.96e-34 125
Msa0327890 MtrunA17_Chr8g0345671 45.033 151 75 5 17 165 11 155 6.38e-33 126
Msa0327890 MtrunA17_Chr3g0113001 52.586 116 48 3 61 170 4 118 7.14e-33 124
Msa0327890 MtrunA17_Chr8g0345691 45.033 151 75 5 17 165 12 156 5.43e-31 121
Msa0327890 MtrunA17_Chr2g0321741 45.926 135 62 4 37 171 12 135 6.12e-31 120
Msa0327890 MtrunA17_Chr4g0050701 36.364 165 86 5 17 173 11 164 8.45e-31 115
Msa0327890 MtrunA17_Chr3g0113031 54.082 98 35 3 83 173 3 97 9.80e-29 112
Msa0327890 MtrunA17_Chr7g0266701 35.714 168 99 3 17 175 4 171 9.29e-28 109
Msa0327890 MtrunA17_Chr8g0345711 41.212 165 79 8 17 166 12 173 1.65e-27 106
Msa0327890 MtrunA17_Chr8g0345731 41.401 157 79 6 17 168 24 172 1.33e-25 101
Msa0327890 MtrunA17_Chr7g0243371 51.190 84 40 1 73 155 17 100 3.35e-24 95.9
Msa0327890 MtrunA17_Chr8g0345721 36.970 165 70 6 20 151 38 201 4.48e-22 92.8
Msa0327890 MtrunA17_Chr8g0345741 44.538 119 62 4 28 144 2 118 6.65e-22 90.9
Msa0327890 MtrunA17_Chr8g0384351 34.568 162 83 6 8 169 1 139 8.37e-22 91.3
Msa0327890 MtrunA17_Chr3g0130321 31.928 166 90 6 15 167 5 160 7.50e-21 89.4
Msa0327890 MtrunA17_Chr8g0345701 39.310 145 68 6 16 144 6 146 1.38e-20 87.8
Msa0327890 MtrunA17_Chr7g0251661 29.730 148 100 3 8 155 1 144 3.45e-16 75.1
Msa0327890 MtrunA17_Chr7g0251651 30.769 130 86 3 15 144 16 141 5.04e-13 67.0
Msa0327890 MtrunA17_Chr4g0040541 31.548 168 88 7 17 166 48 206 5.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327890 AT1G79580.3 53.747 387 111 12 9 351 9 371 3.00e-115 339
Msa0327890 AT1G79580.5 53.747 387 111 12 9 351 9 371 3.00e-115 339
Msa0327890 AT1G79580.4 53.747 387 111 12 9 351 9 371 3.00e-115 339
Msa0327890 AT1G79580.2 53.747 387 111 12 9 351 9 371 3.00e-115 339
Msa0327890 AT1G79580.1 53.747 387 111 12 9 351 9 371 3.00e-115 339
Msa0327890 AT4G10350.1 48.936 329 140 8 9 321 1 317 9.16e-95 286
Msa0327890 AT2G18060.3 48.867 309 133 8 9 300 1 301 4.03e-91 277
Msa0327890 AT2G18060.1 48.867 309 133 8 9 300 1 301 4.03e-91 277
Msa0327890 AT4G36160.1 49.677 310 118 8 16 300 9 305 1.67e-89 273
Msa0327890 AT4G36160.3 49.677 310 118 8 16 300 9 305 1.67e-89 273
Msa0327890 AT4G36160.2 49.677 310 118 8 16 300 13 309 2.08e-89 273
Msa0327890 AT1G33280.1 75.974 154 34 2 17 170 8 158 4.33e-86 262
Msa0327890 AT2G46770.1 66.851 181 45 2 13 179 12 191 1.10e-85 263
Msa0327890 AT1G32770.1 47.771 314 110 8 12 298 11 297 3.71e-85 262
Msa0327890 AT3G61910.1 69.364 173 38 3 12 170 6 177 1.94e-82 254
Msa0327890 AT5G66300.1 46.026 302 125 7 16 303 11 288 7.98e-81 248
Msa0327890 AT1G12260.2 71.895 153 41 2 17 169 7 157 8.51e-78 242
Msa0327890 AT1G12260.1 71.895 153 41 2 17 169 7 157 1.32e-77 244
Msa0327890 AT1G62700.1 72.549 153 40 2 17 169 7 157 4.14e-77 242
Msa0327890 AT1G62700.2 72.549 153 40 2 17 169 7 157 4.14e-77 242
Msa0327890 AT1G71930.2 43.771 297 126 7 16 299 8 276 3.49e-75 235
Msa0327890 AT1G71930.1 43.771 297 126 7 16 299 8 276 3.49e-75 235
Msa0327890 AT5G62380.2 65.409 159 53 2 17 175 7 163 1.17e-74 234
Msa0327890 AT5G62380.1 65.409 159 53 2 17 175 7 163 1.17e-74 234
Msa0327890 AT4G10350.2 44.928 276 124 8 62 321 7 270 7.61e-63 202
Msa0327890 AT2G24430.2 55.215 163 69 2 14 175 13 172 1.32e-60 197
Msa0327890 AT2G24430.1 55.215 163 69 2 14 175 13 172 1.32e-60 197
Msa0327890 AT3G17730.1 53.939 165 73 3 15 178 4 166 4.13e-59 191
Msa0327890 AT3G18400.1 56.129 155 64 2 14 168 2 152 1.99e-58 192
Msa0327890 AT1G76420.1 55.128 156 66 2 14 168 19 171 6.34e-58 191
Msa0327890 AT1G69490.1 50.000 170 76 3 9 173 1 166 3.11e-57 187
Msa0327890 AT5G39610.1 52.381 168 73 3 5 169 8 171 5.14e-57 187
Msa0327890 AT5G07680.1 56.329 158 62 3 14 168 14 167 8.82e-57 188
Msa0327890 AT5G07680.2 56.688 157 61 3 15 168 1 153 9.24e-57 187
Msa0327890 AT1G65910.1 49.724 181 84 4 15 194 4 178 1.30e-56 194
Msa0327890 AT1G61110.1 46.154 182 82 2 11 179 10 188 3.69e-56 186
Msa0327890 AT5G17260.1 55.128 156 66 3 15 168 4 157 1.14e-55 189
Msa0327890 AT5G61430.1 55.063 158 64 3 14 168 13 166 1.23e-55 185
Msa0327890 AT1G77450.1 48.315 178 83 3 8 181 1 173 1.58e-55 182
Msa0327890 AT5G18270.2 36.774 310 158 9 11 287 14 318 3.19e-55 184
Msa0327890 AT3G03200.1 55.769 156 65 3 15 168 4 157 4.47e-55 187
Msa0327890 AT5G18270.1 36.452 310 159 9 11 287 14 318 9.27e-55 183
Msa0327890 AT3G29035.1 53.293 167 71 3 3 166 10 172 2.74e-54 181
Msa0327890 AT3G04060.1 53.503 157 67 2 15 168 18 171 3.04e-54 181
Msa0327890 AT5G63790.1 46.632 193 87 4 1 182 29 216 4.28e-54 180
Msa0327890 AT5G63790.2 46.632 193 87 4 1 182 39 226 4.53e-54 181
Msa0327890 AT3G15170.1 53.086 162 69 3 14 171 17 175 9.95e-54 179
Msa0327890 AT5G46590.1 55.063 158 68 2 13 168 2 158 1.40e-53 178
Msa0327890 AT5G08790.1 50.595 168 72 3 14 175 4 166 2.78e-53 177
Msa0327890 AT3G04070.2 47.486 179 79 3 8 174 1 176 2.91e-53 179
Msa0327890 AT1G54330.1 55.195 154 65 3 15 168 4 153 4.94e-53 177
Msa0327890 AT5G53950.1 53.205 156 66 3 17 168 17 169 1.35e-52 178
Msa0327890 AT4G27410.2 48.087 183 86 5 14 195 11 185 2.22e-52 175
Msa0327890 AT3G15510.1 37.553 237 110 6 21 225 21 251 4.18e-52 177
Msa0327890 AT3G15500.1 49.686 159 75 3 14 171 11 165 4.23e-52 175
Msa0327890 AT1G52890.1 49.686 159 75 3 14 171 11 165 9.92e-52 174
Msa0327890 AT5G46590.2 58.696 138 56 1 13 150 2 138 2.29e-51 172
Msa0327890 AT3G12977.1 52.229 157 69 3 14 168 15 167 3.22e-51 172
Msa0327890 AT3G04070.1 42.991 214 83 5 8 185 1 211 3.73e-51 174
Msa0327890 AT3G10500.1 52.147 163 74 4 11 171 2 162 4.52e-51 178
Msa0327890 AT1G01720.1 46.409 181 79 4 15 182 5 180 5.31e-51 172
Msa0327890 AT5G04410.1 51.534 163 75 4 11 171 2 162 8.84e-51 178
Msa0327890 AT5G24590.2 51.923 156 73 2 16 170 12 166 1.31e-50 175
Msa0327890 AT3G10490.1 49.133 173 80 4 16 182 26 196 9.14e-50 167
Msa0327890 AT2G33480.1 49.091 165 76 3 9 172 7 164 1.39e-49 167
Msa0327890 AT4G27410.3 45.685 197 87 6 14 195 11 202 1.96e-49 168
Msa0327890 AT4G17980.1 51.875 160 72 3 13 168 2 160 2.50e-49 166
Msa0327890 AT3G10480.1 51.592 157 72 3 16 170 26 180 4.69e-49 171
Msa0327890 AT4G17980.2 51.875 160 72 3 13 168 2 160 7.67e-49 166
Msa0327890 AT2G33480.2 48.171 164 77 3 9 172 7 162 1.05e-48 165
Msa0327890 AT5G39820.1 43.386 189 80 5 16 181 19 203 1.34e-48 167
Msa0327890 AT5G13180.1 49.057 159 74 2 12 169 9 161 2.11e-48 164
Msa0327890 AT3G10490.2 50.617 162 76 3 11 170 21 180 2.17e-48 169
Msa0327890 AT2G43000.1 48.101 158 76 3 19 174 20 173 1.79e-47 162
Msa0327890 AT3G10480.2 51.592 157 71 4 16 170 26 179 3.70e-47 166
Msa0327890 AT1G26870.1 46.951 164 73 3 19 171 18 178 3.94e-47 165
Msa0327890 AT1G56010.2 48.750 160 73 4 14 168 16 171 5.83e-47 162
Msa0327890 AT3G49530.2 47.742 155 79 2 16 169 12 165 9.41e-47 164
Msa0327890 AT5G09330.5 40.359 223 121 6 13 227 2 220 1.71e-46 165
Msa0327890 AT5G09330.2 40.359 223 121 6 13 227 2 220 1.71e-46 165
Msa0327890 AT5G09330.4 40.359 223 121 6 13 227 2 220 1.71e-46 165
Msa0327890 AT5G09330.3 40.359 223 121 6 13 227 2 220 1.71e-46 165
Msa0327890 AT5G09330.1 40.359 223 121 6 13 227 2 220 1.71e-46 165
Msa0327890 AT3G49530.1 45.614 171 87 3 16 181 12 181 2.12e-46 164
Msa0327890 AT4G28530.1 48.235 170 63 7 17 168 10 172 1.43e-44 157
Msa0327890 AT1G33060.2 47.337 169 84 4 16 181 23 189 1.72e-44 162
Msa0327890 AT1G33060.1 47.337 169 84 4 16 181 23 189 1.85e-44 162
Msa0327890 AT2G02450.1 43.956 182 88 3 17 198 51 218 1.93e-44 157
Msa0327890 AT3G10480.3 43.386 189 72 3 16 170 26 213 1.93e-44 160
Msa0327890 AT2G02450.2 43.956 182 88 3 17 198 51 218 2.45e-44 157
Msa0327890 AT1G52880.1 46.988 166 73 3 21 174 21 183 3.79e-44 154
Msa0327890 AT5G64060.1 43.182 176 93 4 13 183 2 175 1.38e-43 154
Msa0327890 AT1G32510.1 46.875 160 76 4 17 168 6 164 2.89e-43 151
Msa0327890 AT4G35580.1 49.682 157 74 4 16 170 8 161 1.01e-42 155
Msa0327890 AT4G35580.2 49.682 157 74 4 16 170 8 161 1.14e-42 155
Msa0327890 AT4G35580.3 49.682 157 74 4 16 170 8 161 1.23e-42 155
Msa0327890 AT5G22290.1 40.642 187 103 3 16 202 20 198 1.92e-42 150
Msa0327890 AT1G34190.1 43.709 151 82 3 19 168 18 166 5.76e-42 154
Msa0327890 AT2G27300.1 39.888 178 93 4 9 181 1 169 1.33e-41 148
Msa0327890 AT1G34180.3 46.212 132 69 2 19 150 18 147 5.16e-41 149
Msa0327890 AT2G17040.1 43.373 166 85 4 19 182 8 166 8.00e-41 145
Msa0327890 AT1G34180.1 46.212 132 69 2 19 150 18 147 1.06e-40 150
Msa0327890 AT5G04395.1 45.342 161 76 2 8 156 19 179 1.13e-39 139
Msa0327890 AT3G44290.2 43.791 153 75 4 19 171 16 157 4.02e-39 139
Msa0327890 AT1G34180.4 43.750 144 67 4 19 150 18 159 6.92e-39 144
Msa0327890 AT3G12910.1 40.884 181 84 5 19 181 23 198 1.03e-38 140
Msa0327890 AT1G34180.2 43.750 144 67 4 19 150 18 159 1.15e-38 145
Msa0327890 AT3G44290.1 43.791 153 75 4 19 171 16 157 2.53e-38 140
Msa0327890 AT2G18060.2 39.545 220 108 8 98 300 2 213 5.09e-37 135
Msa0327890 AT5G61430.2 58.586 99 37 2 73 168 6 103 4.63e-35 129
Msa0327890 AT1G32870.1 41.772 158 85 4 17 171 10 163 6.33e-34 131
Msa0327890 AT1G32870.2 41.772 158 85 4 17 171 10 163 7.21e-34 131
Msa0327890 AT1G32870.3 41.772 158 85 4 17 171 46 199 1.06e-33 131
Msa0327890 AT3G12977.2 54.128 109 44 3 62 168 10 114 3.04e-33 123
Msa0327890 AT1G56010.1 55.102 98 39 2 75 168 8 104 8.13e-32 120
Msa0327890 AT5G22380.1 36.364 176 98 5 14 180 4 174 1.06e-29 114
Msa0327890 AT3G44350.2 33.333 189 112 6 14 195 4 185 3.47e-29 113
Msa0327890 AT2G33480.3 50.000 106 51 2 68 172 3 107 5.00e-29 112
Msa0327890 AT5G64530.1 35.882 170 78 6 15 168 1 155 1.02e-26 105
Msa0327890 AT3G44350.1 37.415 147 82 4 14 155 4 145 1.18e-26 103
Msa0327890 AT5G64530.2 41.481 135 63 5 15 148 1 120 2.85e-26 102
Msa0327890 AT1G02230.1 40.698 172 87 8 18 181 4 168 2.99e-25 105
Msa0327890 AT4G28530.2 42.017 119 48 4 17 118 10 124 1.56e-24 102
Msa0327890 AT3G04420.2 41.860 129 71 4 18 144 4 130 1.80e-23 99.0
Msa0327890 AT3G04420.1 41.860 129 71 4 18 144 4 130 3.54e-23 99.0
Msa0327890 AT4G01520.1 37.195 164 93 6 18 176 5 163 4.84e-23 97.8
Msa0327890 AT4G01550.1 38.065 155 82 5 20 168 7 153 1.60e-22 98.6
Msa0327890 AT4G01540.4 37.423 163 90 7 20 176 7 163 2.33e-22 97.4
Msa0327890 AT4G01540.3 37.423 163 90 7 20 176 7 163 2.46e-22 97.8
Msa0327890 AT4G01540.2 37.423 163 90 7 20 176 7 163 2.94e-22 97.4
Msa0327890 AT4G01540.1 37.423 163 90 7 20 176 7 163 3.27e-22 97.8
Msa0327890 AT1G02250.1 42.424 132 66 5 18 144 4 130 1.68e-21 94.7
Msa0327890 AT2G43000.2 44.681 94 49 2 82 173 2 94 9.45e-21 89.4
Msa0327890 AT1G02220.1 41.667 132 70 5 15 144 1 127 1.18e-20 92.4
Msa0327890 AT3G10490.4 51.250 80 36 2 93 170 2 80 3.46e-20 90.9
Msa0327890 AT3G10490.3 51.250 80 36 2 93 170 2 80 3.46e-20 90.9
Msa0327890 AT5G50820.1 34.211 152 74 6 4 146 4 138 8.62e-19 83.6
Msa0327890 AT1G01010.1 34.839 155 85 7 20 165 6 153 7.82e-18 84.7
Msa0327890 AT5G22290.2 37.500 104 59 2 99 202 2 99 5.70e-16 77.0
Msa0327890 AT3G56530.1 28.387 155 105 4 14 166 49 199 1.70e-15 76.6
Msa0327890 AT5G14000.1 29.146 199 126 7 5 198 3 191 1.89e-15 74.7
Msa0327890 AT5G14000.2 30.882 136 86 3 13 146 11 140 3.65e-13 67.0
Msa0327890 AT3G55210.1 25.749 167 99 6 16 166 10 167 1.67e-12 67.4
Msa0327890 AT3G04430.1 35.075 134 71 5 23 144 6 135 6.24e-12 64.3

Find 77 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTCATTCCAATCCTTT+TGG 0.284680 2_4:+39869088 None:intergenic
TAACAGTTCCTCCAGGGTTT+AGG 0.294791 2_4:-39870043 Msa0327890:CDS
GAGCAACTACAGCTGGGTTT+TGG 0.302263 2_4:-39869151 Msa0327890:CDS
GGTGCAGCCTGGTGATTATT+AGG 0.325193 2_4:+39868343 None:intergenic
AATAACACTACCACCTTTGA+TGG 0.325590 2_4:-39868634 Msa0327890:CDS
TTTGGAATTGGTGTGATATA+TGG 0.337061 2_4:+39869106 None:intergenic
CTTCTTCTTCAATTTCTTGT+TGG 0.338565 2_4:+39868761 None:intergenic
TGCATGTGATGATGATGTTT+TGG 0.354863 2_4:+39868682 None:intergenic
ATGGAATGGATCTTAATCTA+AGG 0.360900 2_4:-39868384 Msa0327890:CDS
GGTACTGCTATAGCTGATTC+TGG 0.362952 2_4:+39868583 None:intergenic
CTATTTGTTCTTGTTCCTGT+TGG 0.367370 2_4:+39869173 None:intergenic
TGGTGGTGATTGGTCATTCT+TGG 0.375350 2_4:-39868428 Msa0327890:CDS
TATTTGTTCTTGTTCCTGTT+GGG 0.389319 2_4:+39869174 None:intergenic
TGATGATAATGCAGAAGTTC+AGG 0.405616 2_4:-39868985 Msa0327890:intron
TTTGGTTCTAGAAAATGGTT+TGG 0.426326 2_4:+39868700 None:intergenic
ATCTCAACAGACTTGAGCCT+TGG 0.426871 2_4:-39869929 Msa0327890:CDS
GATAAGTGTAGGATTGGATC+AGG 0.432547 2_4:-39869242 Msa0327890:CDS
GGATGTCCATTGATGAGTTA+TGG 0.436712 2_4:+39868548 None:intergenic
TCACAACCAAGGTAATGAAA+TGG 0.449921 2_4:+39868283 None:intergenic
CACACCAATTCCAAAAGGAT+TGG 0.463232 2_4:-39869098 Msa0327890:CDS
GAAGTTCCAACAGCAGTAGA+AGG 0.470021 2_4:+39868322 None:intergenic
ACAAATAGAGCAACTACAGC+TGG 0.470753 2_4:-39869158 Msa0327890:CDS
AAATTTCCATTTCATTACCT+TGG 0.472448 2_4:-39868289 Msa0327890:CDS
GTTGCAGATAAGTGTAGGAT+TGG 0.472884 2_4:-39869248 Msa0327890:intron
TCTCAACAGACTTGAGCCTT+GGG 0.476536 2_4:-39869928 Msa0327890:CDS
TTCCTTCCATAACTCATCAA+TGG 0.495467 2_4:-39868554 Msa0327890:CDS
AAGATGGATGGGTAGTATGC+AGG 0.497034 2_4:-39868816 Msa0327890:CDS
GCTGCACCTTCTACTGCTGT+TGG 0.514057 2_4:-39868328 Msa0327890:CDS
TCTGATAACATCAAGATCAA+TGG 0.515700 2_4:+39869959 None:intergenic
TACAGAATGATGCAAGGAAG+TGG 0.516848 2_4:-39870071 Msa0327890:CDS
GATGAGTTATGGAAGGAAGT+TGG 0.517420 2_4:+39868559 None:intergenic
TAAAGAAGCTCCTCATCAGT+TGG 0.517483 2_4:+39870014 None:intergenic
CATCATCACATGCAACAACT+AGG 0.517757 2_4:-39868673 Msa0327890:CDS
GGTTGATCAGTGGTGGTGAT+TGG 0.522276 2_4:-39868438 Msa0327890:CDS
GGAGAATTAACAGTTCCTCC+AGG 0.530256 2_4:-39870050 Msa0327890:CDS
CTCATGGTCACAAAACTGAC+TGG 0.530671 2_4:-39869037 Msa0327890:CDS
TATATCACACCAATTCCAAA+AGG 0.530691 2_4:-39869103 Msa0327890:CDS
ACAACAACAAATACTAGCTC+AGG 0.532614 2_4:-39868496 Msa0327890:CDS
AATGCTCTCAAAATTTGTTG+AGG 0.538669 2_4:-39868522 Msa0327890:CDS
AAAGAAGCTCCTCATCAGTT+GGG 0.540956 2_4:+39870015 None:intergenic
TACACTGGACGTGCTCCTCA+TGG 0.542939 2_4:-39869053 Msa0327890:CDS
GACCATTTGTTGATCTCATG+TGG 0.545405 2_4:+39868722 None:intergenic
AAGGACAAGAAATACCCAAC+AGG 0.548438 2_4:-39869188 Msa0327890:CDS
AGCAACAACAACAAGGAGAA+AGG 0.551906 2_4:-39868459 Msa0327890:CDS
AGATGGATGGGTAGTATGCA+GGG 0.553010 2_4:-39868815 Msa0327890:CDS
GAGAATTAACAGTTCCTCCA+GGG 0.560980 2_4:-39870049 Msa0327890:CDS
AGCTTCTTTACTATTACTTG+AGG 0.562735 2_4:-39870001 Msa0327890:CDS
CAGCAGTAGAAGGTGCAGCC+TGG 0.565773 2_4:+39868332 None:intergenic
AACCACATGAGATCAACAAA+TGG 0.569176 2_4:-39868724 Msa0327890:CDS
ATTCCAAAAGGATTGGAATG+AGG 0.575697 2_4:-39869091 Msa0327890:CDS
TAGATGAATTGTACCATCAA+AGG 0.576851 2_4:+39868621 None:intergenic
ACTTGCATCACACAATGGAA+TGG 0.578666 2_4:-39868398 Msa0327890:CDS
TGTGTACCTTTGAGATCCCA+AGG 0.590405 2_4:+39869912 None:intergenic
TAGGTTCCACCCAACTGATG+AGG 0.590857 2_4:-39870024 Msa0327890:CDS
CAAATAGAGCAACTACAGCT+GGG 0.601722 2_4:-39869157 Msa0327890:CDS
GTCCATTGATGAGTTATGGA+AGG 0.603236 2_4:+39868552 None:intergenic
GATCAGGGCCACAGAATGAG+TGG 0.613670 2_4:-39869226 Msa0327890:CDS
AAGAAATACCACTCATTCTG+TGG 0.620194 2_4:+39869218 None:intergenic
AAACTACTTGCATCACACAA+TGG 0.620814 2_4:-39868403 Msa0327890:CDS
CTCATGCAGCAACAACAACA+AGG 0.622496 2_4:-39868466 Msa0327890:CDS
CTTGAGCCTTGGGATCTCAA+AGG 0.623707 2_4:-39869918 Msa0327890:intron
AAAACCTTAGTGTTCTACAC+TGG 0.630864 2_4:-39869068 Msa0327890:CDS
GGAGAAAGGTTGATCAGTGG+TGG 0.631877 2_4:-39868445 Msa0327890:CDS
GAAGCTCCTCATCAGTTGGG+TGG 0.635468 2_4:+39870018 None:intergenic
ACGTCCAGTGTAGAACACTA+AGG 0.638176 2_4:+39869064 None:intergenic
TAACACTCCTAATAATCACC+AGG 0.641336 2_4:-39868350 Msa0327890:CDS
TCTGTATACAGAATGATGCA+AGG 0.648961 2_4:-39870077 Msa0327890:CDS
GAGTTATGGAAGGAAGTTGG+TGG 0.649529 2_4:+39868562 None:intergenic
GTGGTATTTCTTCAGTCACA+AGG 0.650969 2_4:-39869207 Msa0327890:CDS
ATGAATTGTACCATCAAAGG+TGG 0.652155 2_4:+39868624 None:intergenic
GTTGGGTGGAACCTAAACCC+TGG 0.653580 2_4:+39870032 None:intergenic
GATTCTGGACTGAACAATTG+TGG 0.660692 2_4:+39868598 None:intergenic
CACTTGTTGCAGATAAGTGT+AGG 0.683334 2_4:-39869253 Msa0327890:intron
CAAGGAGAAAGGTTGATCAG+TGG 0.686081 2_4:-39868448 Msa0327890:CDS
ATAAGTGTAGGATTGGATCA+GGG 0.691336 2_4:-39869241 Msa0327890:CDS
TATCATGAGACTCACAACCA+AGG 0.694185 2_4:+39868272 None:intergenic
GGGTGGAACCTAAACCCTGG+AGG 0.757480 2_4:+39870035 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATGAACTAATACTA+TGG - chr2_4:39868645-39868664 Msa0327890:CDS 15.0%
!! TTATATATGAACTAATACTA+TGG - chr2_4:39868645-39868664 Msa0327890:CDS 15.0%
!!! CTTTGTTTCATACTATATAT+AGG - chr2_4:39868577-39868596 Msa0327890:CDS 20.0%
!!! GTGTTTTTAGTTTGTATTAA+TGG + chr2_4:39868793-39868812 None:intergenic 20.0%
!!! CTATATTTTTCAAATCATTG+CGG + chr2_4:39868902-39868921 None:intergenic 20.0%
!! TATATATGTGATCTATCAAA+TGG - chr2_4:39869456-39869475 Msa0327890:intron 20.0%
!!! CTTTGTTTCATACTATATAT+AGG - chr2_4:39868577-39868596 Msa0327890:CDS 20.0%
!!! GTGTTTTTAGTTTGTATTAA+TGG + chr2_4:39868793-39868812 None:intergenic 20.0%
!!! CTATATTTTTCAAATCATTG+CGG + chr2_4:39868902-39868921 None:intergenic 20.0%
!! TATATATGTGATCTATCAAA+TGG - chr2_4:39869456-39869475 Msa0327890:intron 20.0%
! ATTGTGAGAAGCAATATATT+TGG + chr2_4:39868696-39868715 None:intergenic 25.0%
! TATACATGCTGAAATATGAT+CGG - chr2_4:39868729-39868748 Msa0327890:CDS 25.0%
!! ACTACAAAACTATTTTACAC+CGG - chr2_4:39868757-39868776 Msa0327890:CDS 25.0%
! TAATGAGGTTCTTAATTACT+TGG + chr2_4:39869488-39869507 None:intergenic 25.0%
!!! ACCTCATTATTTTGTTTTTC+AGG - chr2_4:39869499-39869518 Msa0327890:intron 25.0%
! TCCTGAAAAACAAAATAATG+AGG + chr2_4:39869503-39869522 None:intergenic 25.0%
!!! TATTTTGTTTTTCAGGAAGA+TGG - chr2_4:39869506-39869525 Msa0327890:intron 25.0%
! AAATTTCCATTTCATTACCT+TGG - chr2_4:39870049-39870068 Msa0327890:CDS 25.0%
! ATTGTGAGAAGCAATATATT+TGG + chr2_4:39868696-39868715 None:intergenic 25.0%
! TATACATGCTGAAATATGAT+CGG - chr2_4:39868729-39868748 Msa0327890:CDS 25.0%
!! ACTACAAAACTATTTTACAC+CGG - chr2_4:39868757-39868776 Msa0327890:CDS 25.0%
! TAATGAGGTTCTTAATTACT+TGG + chr2_4:39869488-39869507 None:intergenic 25.0%
!!! ACCTCATTATTTTGTTTTTC+AGG - chr2_4:39869499-39869518 Msa0327890:intron 25.0%
! TCCTGAAAAACAAAATAATG+AGG + chr2_4:39869503-39869522 None:intergenic 25.0%
!!! TATTTTGTTTTTCAGGAAGA+TGG - chr2_4:39869506-39869525 Msa0327890:intron 25.0%
! AAATTTCCATTTCATTACCT+TGG - chr2_4:39870049-39870068 Msa0327890:CDS 25.0%
AGCTTCTTTACTATTACTTG+AGG - chr2_4:39868337-39868356 Msa0327890:CDS 30.0%
TCTGATAACATCAAGATCAA+TGG + chr2_4:39868382-39868401 None:intergenic 30.0%
TTCTCATAACCACTTAAAGT+TGG - chr2_4:39868496-39868515 Msa0327890:CDS 30.0%
ATTTGCATACCAACTTTAAG+TGG + chr2_4:39868508-39868527 None:intergenic 30.0%
CTAAATGTAATCACATGTGT+TGG - chr2_4:39868926-39868945 Msa0327890:intron 30.0%
TATTTGTTCTTGTTCCTGTT+GGG + chr2_4:39869167-39869186 None:intergenic 30.0%
! TTTGGAATTGGTGTGATATA+TGG + chr2_4:39869235-39869254 None:intergenic 30.0%
TATATCACACCAATTCCAAA+AGG - chr2_4:39869235-39869254 Msa0327890:CDS 30.0%
TATCATCATCATCATCAAGA+CGG + chr2_4:39869341-39869360 None:intergenic 30.0%
CTTCTTCTTCAATTTCTTGT+TGG + chr2_4:39869580-39869599 None:intergenic 30.0%
!! TTTGGTTCTAGAAAATGGTT+TGG + chr2_4:39869641-39869660 None:intergenic 30.0%
!!! GATGTTTTGGTTCTAGAAAA+TGG + chr2_4:39869646-39869665 None:intergenic 30.0%
TAGATGAATTGTACCATCAA+AGG + chr2_4:39869720-39869739 None:intergenic 30.0%
!!! ACAAATTTTGAGAGCATTCA+AGG + chr2_4:39869814-39869833 None:intergenic 30.0%
!! AATGCTCTCAAAATTTGTTG+AGG - chr2_4:39869816-39869835 Msa0327890:intron 30.0%
ATGGAATGGATCTTAATCTA+AGG - chr2_4:39869954-39869973 Msa0327890:CDS 30.0%
AGCTTCTTTACTATTACTTG+AGG - chr2_4:39868337-39868356 Msa0327890:CDS 30.0%
TCTGATAACATCAAGATCAA+TGG + chr2_4:39868382-39868401 None:intergenic 30.0%
TTCTCATAACCACTTAAAGT+TGG - chr2_4:39868496-39868515 Msa0327890:CDS 30.0%
ATTTGCATACCAACTTTAAG+TGG + chr2_4:39868508-39868527 None:intergenic 30.0%
CTAAATGTAATCACATGTGT+TGG - chr2_4:39868926-39868945 Msa0327890:intron 30.0%
TATTTGTTCTTGTTCCTGTT+GGG + chr2_4:39869167-39869186 None:intergenic 30.0%
! TTTGGAATTGGTGTGATATA+TGG + chr2_4:39869235-39869254 None:intergenic 30.0%
TATATCACACCAATTCCAAA+AGG - chr2_4:39869235-39869254 Msa0327890:CDS 30.0%
TATCATCATCATCATCAAGA+CGG + chr2_4:39869341-39869360 None:intergenic 30.0%
CTTCTTCTTCAATTTCTTGT+TGG + chr2_4:39869580-39869599 None:intergenic 30.0%
!! TTTGGTTCTAGAAAATGGTT+TGG + chr2_4:39869641-39869660 None:intergenic 30.0%
!!! GATGTTTTGGTTCTAGAAAA+TGG + chr2_4:39869646-39869665 None:intergenic 30.0%
TAGATGAATTGTACCATCAA+AGG + chr2_4:39869720-39869739 None:intergenic 30.0%
!!! ACAAATTTTGAGAGCATTCA+AGG + chr2_4:39869814-39869833 None:intergenic 30.0%
!! AATGCTCTCAAAATTTGTTG+AGG - chr2_4:39869816-39869835 Msa0327890:intron 30.0%
ATGGAATGGATCTTAATCTA+AGG - chr2_4:39869954-39869973 Msa0327890:CDS 30.0%
TCTGTATACAGAATGATGCA+AGG - chr2_4:39868261-39868280 Msa0327890:CDS 35.0%
GCGCATAAGTAAGATATGAT+TGG + chr2_4:39868674-39868693 None:intergenic 35.0%
! ACAAAACTATTTTACACCGG+TGG - chr2_4:39868760-39868779 Msa0327890:CDS 35.0%
! TATTAATGGATATGCACCAC+CGG + chr2_4:39868779-39868798 None:intergenic 35.0%
CTTAAGATTGAAGACATGTC+TGG + chr2_4:39868972-39868991 None:intergenic 35.0%
ATAAGTGTAGGATTGGATCA+GGG - chr2_4:39869097-39869116 Msa0327890:CDS 35.0%
AAGAAATACCACTCATTCTG+TGG + chr2_4:39869123-39869142 None:intergenic 35.0%
CTATTTGTTCTTGTTCCTGT+TGG + chr2_4:39869168-39869187 None:intergenic 35.0%
!!! CATTCCAATCCTTTTGGAAT+TGG + chr2_4:39869247-39869266 None:intergenic 35.0%
ATTCCAAAAGGATTGGAATG+AGG - chr2_4:39869247-39869266 Msa0327890:intron 35.0%
! TTTCCTCATTCCAATCCTTT+TGG + chr2_4:39869253-39869272 None:intergenic 35.0%
AAAACCTTAGTGTTCTACAC+TGG - chr2_4:39869270-39869289 Msa0327890:intron 35.0%
! TGATGATAATGCAGAAGTTC+AGG - chr2_4:39869353-39869372 Msa0327890:intron 35.0%
!!! TTGTTTTTCAGGAAGATGGA+TGG - chr2_4:39869510-39869529 Msa0327890:intron 35.0%
!!! TGTTTTTCAGGAAGATGGAT+GGG - chr2_4:39869511-39869530 Msa0327890:intron 35.0%
AACCACATGAGATCAACAAA+TGG - chr2_4:39869614-39869633 Msa0327890:intron 35.0%
!! TGCATGTGATGATGATGTTT+TGG + chr2_4:39869659-39869678 None:intergenic 35.0%
AATAACACTACCACCTTTGA+TGG - chr2_4:39869704-39869723 Msa0327890:intron 35.0%
ATGAATTGTACCATCAAAGG+TGG + chr2_4:39869717-39869736 None:intergenic 35.0%
TTCCTTCCATAACTCATCAA+TGG - chr2_4:39869784-39869803 Msa0327890:intron 35.0%
ACAACAACAAATACTAGCTC+AGG - chr2_4:39869842-39869861 Msa0327890:intron 35.0%
AAACTACTTGCATCACACAA+TGG - chr2_4:39869935-39869954 Msa0327890:CDS 35.0%
TAACACTCCTAATAATCACC+AGG - chr2_4:39869988-39870007 Msa0327890:CDS 35.0%
TCACAACCAAGGTAATGAAA+TGG + chr2_4:39870058-39870077 None:intergenic 35.0%
TCTGTATACAGAATGATGCA+AGG - chr2_4:39868261-39868280 Msa0327890:CDS 35.0%
GCGCATAAGTAAGATATGAT+TGG + chr2_4:39868674-39868693 None:intergenic 35.0%
! ACAAAACTATTTTACACCGG+TGG - chr2_4:39868760-39868779 Msa0327890:CDS 35.0%
! TATTAATGGATATGCACCAC+CGG + chr2_4:39868779-39868798 None:intergenic 35.0%
CTTAAGATTGAAGACATGTC+TGG + chr2_4:39868972-39868991 None:intergenic 35.0%
ATAAGTGTAGGATTGGATCA+GGG - chr2_4:39869097-39869116 Msa0327890:CDS 35.0%
AAGAAATACCACTCATTCTG+TGG + chr2_4:39869123-39869142 None:intergenic 35.0%
CTATTTGTTCTTGTTCCTGT+TGG + chr2_4:39869168-39869187 None:intergenic 35.0%
!!! CATTCCAATCCTTTTGGAAT+TGG + chr2_4:39869247-39869266 None:intergenic 35.0%
ATTCCAAAAGGATTGGAATG+AGG - chr2_4:39869247-39869266 Msa0327890:intron 35.0%
! TTTCCTCATTCCAATCCTTT+TGG + chr2_4:39869253-39869272 None:intergenic 35.0%
AAAACCTTAGTGTTCTACAC+TGG - chr2_4:39869270-39869289 Msa0327890:intron 35.0%
! TGATGATAATGCAGAAGTTC+AGG - chr2_4:39869353-39869372 Msa0327890:intron 35.0%
!!! TTGTTTTTCAGGAAGATGGA+TGG - chr2_4:39869510-39869529 Msa0327890:intron 35.0%
!!! TGTTTTTCAGGAAGATGGAT+GGG - chr2_4:39869511-39869530 Msa0327890:intron 35.0%
AACCACATGAGATCAACAAA+TGG - chr2_4:39869614-39869633 Msa0327890:intron 35.0%
!! TGCATGTGATGATGATGTTT+TGG + chr2_4:39869659-39869678 None:intergenic 35.0%
AATAACACTACCACCTTTGA+TGG - chr2_4:39869704-39869723 Msa0327890:intron 35.0%
ATGAATTGTACCATCAAAGG+TGG + chr2_4:39869717-39869736 None:intergenic 35.0%
TTCCTTCCATAACTCATCAA+TGG - chr2_4:39869784-39869803 Msa0327890:intron 35.0%
ACAACAACAAATACTAGCTC+AGG - chr2_4:39869842-39869861 Msa0327890:intron 35.0%
AAACTACTTGCATCACACAA+TGG - chr2_4:39869935-39869954 Msa0327890:CDS 35.0%
TAACACTCCTAATAATCACC+AGG - chr2_4:39869988-39870007 Msa0327890:CDS 35.0%
TCACAACCAAGGTAATGAAA+TGG + chr2_4:39870058-39870077 None:intergenic 35.0%
TACAGAATGATGCAAGGAAG+TGG - chr2_4:39868267-39868286 Msa0327890:CDS 40.0%
GAGAATTAACAGTTCCTCCA+GGG - chr2_4:39868289-39868308 Msa0327890:CDS 40.0%
AAAGAAGCTCCTCATCAGTT+GGG + chr2_4:39868326-39868345 None:intergenic 40.0%
TAAAGAAGCTCCTCATCAGT+TGG + chr2_4:39868327-39868346 None:intergenic 40.0%
AACACTTGCACTAGTAACAC+CGG - chr2_4:39868854-39868873 Msa0327890:intron 40.0%
TTGCGGATATCAACGTATCA+GGG + chr2_4:39868885-39868904 None:intergenic 40.0%
ATTGCGGATATCAACGTATC+AGG + chr2_4:39868886-39868905 None:intergenic 40.0%
!!! CACATGTGTTGGTTTTGTCT+CGG - chr2_4:39868937-39868956 Msa0327890:intron 40.0%
! CACTTGTTGCAGATAAGTGT+AGG - chr2_4:39869085-39869104 Msa0327890:CDS 40.0%
GTTGCAGATAAGTGTAGGAT+TGG - chr2_4:39869090-39869109 Msa0327890:CDS 40.0%
GATAAGTGTAGGATTGGATC+AGG - chr2_4:39869096-39869115 Msa0327890:CDS 40.0%
GTGGTATTTCTTCAGTCACA+AGG - chr2_4:39869131-39869150 Msa0327890:CDS 40.0%
AAGGACAAGAAATACCCAAC+AGG - chr2_4:39869150-39869169 Msa0327890:CDS 40.0%
ACAAATAGAGCAACTACAGC+TGG - chr2_4:39869180-39869199 Msa0327890:CDS 40.0%
CAAATAGAGCAACTACAGCT+GGG - chr2_4:39869181-39869200 Msa0327890:CDS 40.0%
CACACCAATTCCAAAAGGAT+TGG - chr2_4:39869240-39869259 Msa0327890:CDS 40.0%
! GACCATTTGTTGATCTCATG+TGG + chr2_4:39869619-39869638 None:intergenic 40.0%
CATCATCACATGCAACAACT+AGG - chr2_4:39869665-39869684 Msa0327890:intron 40.0%
GATTCTGGACTGAACAATTG+TGG + chr2_4:39869743-39869762 None:intergenic 40.0%
GATGAGTTATGGAAGGAAGT+TGG + chr2_4:39869782-39869801 None:intergenic 40.0%
GTCCATTGATGAGTTATGGA+AGG + chr2_4:39869789-39869808 None:intergenic 40.0%
GGATGTCCATTGATGAGTTA+TGG + chr2_4:39869793-39869812 None:intergenic 40.0%
AGCAACAACAACAAGGAGAA+AGG - chr2_4:39869879-39869898 Msa0327890:intron 40.0%
ACTTGCATCACACAATGGAA+TGG - chr2_4:39869940-39869959 Msa0327890:CDS 40.0%
TATCATGAGACTCACAACCA+AGG + chr2_4:39870069-39870088 None:intergenic 40.0%
TACAGAATGATGCAAGGAAG+TGG - chr2_4:39868267-39868286 Msa0327890:CDS 40.0%
GAGAATTAACAGTTCCTCCA+GGG - chr2_4:39868289-39868308 Msa0327890:CDS 40.0%
AAAGAAGCTCCTCATCAGTT+GGG + chr2_4:39868326-39868345 None:intergenic 40.0%
TAAAGAAGCTCCTCATCAGT+TGG + chr2_4:39868327-39868346 None:intergenic 40.0%
AACACTTGCACTAGTAACAC+CGG - chr2_4:39868854-39868873 Msa0327890:intron 40.0%
TTGCGGATATCAACGTATCA+GGG + chr2_4:39868885-39868904 None:intergenic 40.0%
ATTGCGGATATCAACGTATC+AGG + chr2_4:39868886-39868905 None:intergenic 40.0%
!!! CACATGTGTTGGTTTTGTCT+CGG - chr2_4:39868937-39868956 Msa0327890:intron 40.0%
! CACTTGTTGCAGATAAGTGT+AGG - chr2_4:39869085-39869104 Msa0327890:CDS 40.0%
GTTGCAGATAAGTGTAGGAT+TGG - chr2_4:39869090-39869109 Msa0327890:CDS 40.0%
GATAAGTGTAGGATTGGATC+AGG - chr2_4:39869096-39869115 Msa0327890:CDS 40.0%
GTGGTATTTCTTCAGTCACA+AGG - chr2_4:39869131-39869150 Msa0327890:CDS 40.0%
AAGGACAAGAAATACCCAAC+AGG - chr2_4:39869150-39869169 Msa0327890:CDS 40.0%
ACAAATAGAGCAACTACAGC+TGG - chr2_4:39869180-39869199 Msa0327890:CDS 40.0%
CAAATAGAGCAACTACAGCT+GGG - chr2_4:39869181-39869200 Msa0327890:CDS 40.0%
CACACCAATTCCAAAAGGAT+TGG - chr2_4:39869240-39869259 Msa0327890:CDS 40.0%
! GACCATTTGTTGATCTCATG+TGG + chr2_4:39869619-39869638 None:intergenic 40.0%
CATCATCACATGCAACAACT+AGG - chr2_4:39869665-39869684 Msa0327890:intron 40.0%
GATTCTGGACTGAACAATTG+TGG + chr2_4:39869743-39869762 None:intergenic 40.0%
GATGAGTTATGGAAGGAAGT+TGG + chr2_4:39869782-39869801 None:intergenic 40.0%
GTCCATTGATGAGTTATGGA+AGG + chr2_4:39869789-39869808 None:intergenic 40.0%
GGATGTCCATTGATGAGTTA+TGG + chr2_4:39869793-39869812 None:intergenic 40.0%
AGCAACAACAACAAGGAGAA+AGG - chr2_4:39869879-39869898 Msa0327890:intron 40.0%
ACTTGCATCACACAATGGAA+TGG - chr2_4:39869940-39869959 Msa0327890:CDS 40.0%
TATCATGAGACTCACAACCA+AGG + chr2_4:39870069-39870088 None:intergenic 40.0%
GGAGAATTAACAGTTCCTCC+AGG - chr2_4:39868288-39868307 Msa0327890:CDS 45.0%
TAACAGTTCCTCCAGGGTTT+AGG - chr2_4:39868295-39868314 Msa0327890:CDS 45.0%
ATCTCAACAGACTTGAGCCT+TGG - chr2_4:39868409-39868428 Msa0327890:CDS 45.0%
TCTCAACAGACTTGAGCCTT+GGG - chr2_4:39868410-39868429 Msa0327890:CDS 45.0%
!! TGTGTACCTTTGAGATCCCA+AGG + chr2_4:39868429-39868448 None:intergenic 45.0%
! TCAACGTATCAGGGTTGATC+CGG + chr2_4:39868876-39868895 None:intergenic 45.0%
ACGTCCAGTGTAGAACACTA+AGG + chr2_4:39869277-39869296 None:intergenic 45.0%
!! CAGTCAGTTTTGTGACCATG+AGG + chr2_4:39869303-39869322 None:intergenic 45.0%
CTCATGGTCACAAAACTGAC+TGG - chr2_4:39869301-39869320 Msa0327890:intron 45.0%
CATGCACTACAAGTGTATGC+AGG + chr2_4:39869392-39869411 None:intergenic 45.0%
AAGATGGATGGGTAGTATGC+AGG - chr2_4:39869522-39869541 Msa0327890:intron 45.0%
AGATGGATGGGTAGTATGCA+GGG - chr2_4:39869523-39869542 Msa0327890:intron 45.0%
! GGTACTGCTATAGCTGATTC+TGG + chr2_4:39869758-39869777 None:intergenic 45.0%
GAGTTATGGAAGGAAGTTGG+TGG + chr2_4:39869779-39869798 None:intergenic 45.0%
CTCATGCAGCAACAACAACA+AGG - chr2_4:39869872-39869891 Msa0327890:intron 45.0%
! CAAGGAGAAAGGTTGATCAG+TGG - chr2_4:39869890-39869909 Msa0327890:intron 45.0%
! TGGTGGTGATTGGTCATTCT+TGG - chr2_4:39869910-39869929 Msa0327890:intron 45.0%
GAAGTTCCAACAGCAGTAGA+AGG + chr2_4:39870019-39870038 None:intergenic 45.0%
GGAGAATTAACAGTTCCTCC+AGG - chr2_4:39868288-39868307 Msa0327890:CDS 45.0%
TAACAGTTCCTCCAGGGTTT+AGG - chr2_4:39868295-39868314 Msa0327890:CDS 45.0%
ATCTCAACAGACTTGAGCCT+TGG - chr2_4:39868409-39868428 Msa0327890:CDS 45.0%
TCTCAACAGACTTGAGCCTT+GGG - chr2_4:39868410-39868429 Msa0327890:CDS 45.0%
!! TGTGTACCTTTGAGATCCCA+AGG + chr2_4:39868429-39868448 None:intergenic 45.0%
! TCAACGTATCAGGGTTGATC+CGG + chr2_4:39868876-39868895 None:intergenic 45.0%
ACGTCCAGTGTAGAACACTA+AGG + chr2_4:39869277-39869296 None:intergenic 45.0%
!! CAGTCAGTTTTGTGACCATG+AGG + chr2_4:39869303-39869322 None:intergenic 45.0%
CTCATGGTCACAAAACTGAC+TGG - chr2_4:39869301-39869320 Msa0327890:intron 45.0%
CATGCACTACAAGTGTATGC+AGG + chr2_4:39869392-39869411 None:intergenic 45.0%
AAGATGGATGGGTAGTATGC+AGG - chr2_4:39869522-39869541 Msa0327890:intron 45.0%
AGATGGATGGGTAGTATGCA+GGG - chr2_4:39869523-39869542 Msa0327890:intron 45.0%
! GGTACTGCTATAGCTGATTC+TGG + chr2_4:39869758-39869777 None:intergenic 45.0%
GAGTTATGGAAGGAAGTTGG+TGG + chr2_4:39869779-39869798 None:intergenic 45.0%
CTCATGCAGCAACAACAACA+AGG - chr2_4:39869872-39869891 Msa0327890:intron 45.0%
! CAAGGAGAAAGGTTGATCAG+TGG - chr2_4:39869890-39869909 Msa0327890:intron 45.0%
! TGGTGGTGATTGGTCATTCT+TGG - chr2_4:39869910-39869929 Msa0327890:intron 45.0%
GAAGTTCCAACAGCAGTAGA+AGG + chr2_4:39870019-39870038 None:intergenic 45.0%
TAGGTTCCACCCAACTGATG+AGG - chr2_4:39868314-39868333 Msa0327890:CDS 50.0%
CTTGAGCCTTGGGATCTCAA+AGG - chr2_4:39868420-39868439 Msa0327890:CDS 50.0%
!!! TGTTGGTTTTGTCTCGGCGT+CGG - chr2_4:39868943-39868962 Msa0327890:intron 50.0%
! GAGCAACTACAGCTGGGTTT+TGG - chr2_4:39869187-39869206 Msa0327890:CDS 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG - chr2_4:39869198-39869217 Msa0327890:CDS 50.0%
! GGAGAAAGGTTGATCAGTGG+TGG - chr2_4:39869893-39869912 Msa0327890:intron 50.0%
! GGTTGATCAGTGGTGGTGAT+TGG - chr2_4:39869900-39869919 Msa0327890:intron 50.0%
GGTGCAGCCTGGTGATTATT+AGG + chr2_4:39869998-39870017 None:intergenic 50.0%
TAGGTTCCACCCAACTGATG+AGG - chr2_4:39868314-39868333 Msa0327890:CDS 50.0%
CTTGAGCCTTGGGATCTCAA+AGG - chr2_4:39868420-39868439 Msa0327890:CDS 50.0%
!!! TGTTGGTTTTGTCTCGGCGT+CGG - chr2_4:39868943-39868962 Msa0327890:intron 50.0%
! GAGCAACTACAGCTGGGTTT+TGG - chr2_4:39869187-39869206 Msa0327890:CDS 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG - chr2_4:39869198-39869217 Msa0327890:CDS 50.0%
! GGAGAAAGGTTGATCAGTGG+TGG - chr2_4:39869893-39869912 Msa0327890:intron 50.0%
! GGTTGATCAGTGGTGGTGAT+TGG - chr2_4:39869900-39869919 Msa0327890:intron 50.0%
GGTGCAGCCTGGTGATTATT+AGG + chr2_4:39869998-39870017 None:intergenic 50.0%
GTTGGGTGGAACCTAAACCC+TGG + chr2_4:39868309-39868328 None:intergenic 55.0%
GAAGCTCCTCATCAGTTGGG+TGG + chr2_4:39868323-39868342 None:intergenic 55.0%
GATCAGGGCCACAGAATGAG+TGG - chr2_4:39869112-39869131 Msa0327890:CDS 55.0%
TACACTGGACGTGCTCCTCA+TGG - chr2_4:39869285-39869304 Msa0327890:intron 55.0%
GCTGCACCTTCTACTGCTGT+TGG - chr2_4:39870010-39870029 Msa0327890:CDS 55.0%
GTTGGGTGGAACCTAAACCC+TGG + chr2_4:39868309-39868328 None:intergenic 55.0%
GAAGCTCCTCATCAGTTGGG+TGG + chr2_4:39868323-39868342 None:intergenic 55.0%
GATCAGGGCCACAGAATGAG+TGG - chr2_4:39869112-39869131 Msa0327890:CDS 55.0%
TACACTGGACGTGCTCCTCA+TGG - chr2_4:39869285-39869304 Msa0327890:intron 55.0%
GCTGCACCTTCTACTGCTGT+TGG - chr2_4:39870010-39870029 Msa0327890:CDS 55.0%
GGGTGGAACCTAAACCCTGG+AGG + chr2_4:39868306-39868325 None:intergenic 60.0%
! CAGCAGTAGAAGGTGCAGCC+TGG + chr2_4:39870009-39870028 None:intergenic 60.0%
GGGTGGAACCTAAACCCTGG+AGG + chr2_4:39868306-39868325 None:intergenic 60.0%
! CAGCAGTAGAAGGTGCAGCC+TGG + chr2_4:39870009-39870028 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 39868252 39870108 39868252 ID=Msa0327890;Name=Msa0327890
chr2_4 mRNA 39868252 39870108 39868252 ID=Msa0327890-mRNA-1;Parent=Msa0327890;Name=Msa0327890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|351
chr2_4 exon 39869919 39870108 39869919 ID=Msa0327890-mRNA-1:exon:12068;Parent=Msa0327890-mRNA-1
chr2_4 exon 39868986 39869263 39868986 ID=Msa0327890-mRNA-1:exon:12067;Parent=Msa0327890-mRNA-1
chr2_4 exon 39868252 39868839 39868252 ID=Msa0327890-mRNA-1:exon:12066;Parent=Msa0327890-mRNA-1
chr2_4 CDS 39869919 39870108 39869919 ID=Msa0327890-mRNA-1:cds;Parent=Msa0327890-mRNA-1
chr2_4 CDS 39868986 39869263 39868986 ID=Msa0327890-mRNA-1:cds;Parent=Msa0327890-mRNA-1
chr2_4 CDS 39868252 39868839 39868252 ID=Msa0327890-mRNA-1:cds;Parent=Msa0327890-mRNA-1
Gene Sequence

>Msa0327890

AATAGGGAATCTGTATACAGAATGATGCAAGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCAACTGATGAGGAGCTTCTTTACTATTACTTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTCAACAGACTTGAGCCTTGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAGAATGAGTGGTATTTCTTCAGTCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCCATATATCACACCAATTCCAAAAGGATTGGAATGAGGAAAACCTTAGTGTTCTACACTGGACGTGCTCCTCATGGTCACAAAACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGATGATAATGCAGAAGTTCAGGAAGATGGATGGGTAGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAAGCTACCAACAAGAAATTGAAGAAGAAGATCATCACATGATTAACCACATGAGATCAACAAATGGTCCAAACCATTTTCTAGAACCAAAACATCATCATCACATGCAACAACTAGGACTATATGATTACAACAATAACACTACCACCTTTGATGGTACAATTCATCTACCACAATTGTTCAGTCCAGAATCAGCTATAGCAGTACCACCAACTTCCTTCCATAACTCATCAATGGACATCCTTGAATGCTCTCAAAATTTGTTGAGGCTCACAACAACAAATACTAGCTCAGGACTTAATCTCATGCAGCAACAACAACAAGGAGAAAGGTTGATCAGTGGTGGTGATTGGTCATTCTTGGATAAACTACTTGCATCACACAATGGAATGGATCTTAATCTAAGGAACAAATTATGTAACACTCCTAATAATCACCAGGCTGCACCTTCTACTGCTGTTGGAACTTCTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGTCTCATGATATTATGAAATTTTCAAAGTAA

Protein sequence

>Msa0327890

NRESVYRMMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDDNAEVQEDGWVVCRVFKKKNTNRSYQQEIEEEDHHMINHMRSTNGPNHFLEPKHHHHMQQLGLYDYNNNTTTFDGTIHLPQLFSPESAIAVPPTSFHNSSMDILECSQNLLRLTTTNTSSGLNLMQQQQQGERLISGGDWSFLDKLLASHNGMDLNLRNKLCNTPNNHQAAPSTAVGTSSAQKFPFHYLGCESHDIMKFSK*