Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935440 | sp|Q5GQ66|PIOX_PEA | 71.667 | 420 | 48 | 4 | 1 | 349 | 1 | 420 | 0.0 | 602 |
| Msa0935440 | sp|Q5GQ66|PIOX_PEA | 73.077 | 156 | 22 | 1 | 347 | 482 | 488 | 643 | 9.15e-69 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935440 | A0A396HDI8 | 82.578 | 419 | 3 | 3 | 1 | 349 | 1 | 419 | 0.0 | 682 |
| Msa0935440 | A0A396HDI8 | 85.256 | 156 | 3 | 1 | 347 | 482 | 487 | 642 | 5.37e-78 | 265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013040 | Msa0935440 | 0.800733 | 1.255046e-48 | -8.615850e-47 |
| Msa0616010 | Msa0935440 | 0.822279 | 2.578593e-53 | -8.615850e-47 |
| Msa0618700 | Msa0935440 | 0.809765 | 1.609507e-50 | -8.615850e-47 |
| Msa0628140 | Msa0935440 | 0.804760 | 1.850694e-49 | -8.615850e-47 |
| Msa0643190 | Msa0935440 | 0.817955 | 2.521462e-52 | -8.615850e-47 |
| Msa0645060 | Msa0935440 | 0.809210 | 2.117632e-50 | -8.615850e-47 |
| Msa0652580 | Msa0935440 | 0.806917 | 6.517135e-50 | -8.615850e-47 |
| Msa0655430 | Msa0935440 | 0.849763 | 2.623582e-60 | -8.615850e-47 |
| Msa0665830 | Msa0935440 | 0.801770 | 7.697691e-49 | -8.615850e-47 |
| Msa0667600 | Msa0935440 | 0.804124 | 2.511741e-49 | -8.615850e-47 |
| Msa0699230 | Msa0935440 | 0.807244 | 5.557998e-50 | -8.615850e-47 |
| Msa0720870 | Msa0935440 | 0.807197 | 5.685111e-50 | -8.615850e-47 |
| Msa0739720 | Msa0935440 | 0.802670 | 5.024187e-49 | -8.615850e-47 |
| Msa0753500 | Msa0935440 | 0.821219 | 4.534701e-53 | -8.615850e-47 |
| Msa0754750 | Msa0935440 | 0.815737 | 7.928891e-52 | -8.615850e-47 |
| Msa0761420 | Msa0935440 | 0.813765 | 2.169194e-51 | -8.615850e-47 |
| Msa0795210 | Msa0935440 | 0.817621 | 2.998707e-52 | -8.615850e-47 |
| Msa0814160 | Msa0935440 | 0.807828 | 4.176600e-50 | -8.615850e-47 |
| Msa0822400 | Msa0935440 | 0.800949 | 1.133658e-48 | -8.615850e-47 |
| Msa0822410 | Msa0935440 | 0.801819 | 7.519937e-49 | -8.615850e-47 |
| Msa0832750 | Msa0935440 | 0.815487 | 9.017439e-52 | -8.615850e-47 |
| Msa0840080 | Msa0935440 | 0.801203 | 1.006045e-48 | -8.615850e-47 |
| Msa0138870 | Msa0935440 | 0.805616 | 1.224862e-49 | -8.615850e-47 |
| Msa0190670 | Msa0935440 | 0.814119 | 1.812218e-51 | -8.615850e-47 |
| Msa0220090 | Msa0935440 | 0.832246 | 1.054456e-55 | -8.615850e-47 |
| Msa0470420 | Msa0935440 | 0.808606 | 2.851694e-50 | -8.615850e-47 |
| Msa0251120 | Msa0935440 | 0.804387 | 2.214055e-49 | -8.615850e-47 |
| Msa0261400 | Msa0935440 | 0.827803 | 1.278880e-54 | -8.615850e-47 |
| Msa0277520 | Msa0935440 | 0.800277 | 1.554007e-48 | -8.615850e-47 |
| Msa0299030 | Msa0935440 | 0.815786 | 7.734204e-52 | -8.615850e-47 |
| Msa0348370 | Msa0935440 | 0.814135 | 1.797756e-51 | -8.615850e-47 |
| Msa0484410 | Msa0935440 | 0.825455 | 4.645099e-54 | -8.615850e-47 |
| Msa0496060 | Msa0935440 | 0.804432 | 2.166530e-49 | -8.615850e-47 |
| Msa0496070 | Msa0935440 | 0.814154 | 1.779822e-51 | -8.615850e-47 |
| Msa0523720 | Msa0935440 | 0.809236 | 2.090391e-50 | -8.615850e-47 |
| Msa0562050 | Msa0935440 | 0.823249 | 1.533118e-53 | -8.615850e-47 |
| Msa0583390 | Msa0935440 | 0.818443 | 1.954840e-52 | -8.615850e-47 |
| Msa0587870 | Msa0935440 | 0.821818 | 3.299015e-53 | -8.615850e-47 |
| Msa0591490 | Msa0935440 | 0.802271 | 6.071543e-49 | -8.615850e-47 |
| Msa0602050 | Msa0935440 | 0.828369 | 9.343859e-55 | -8.615850e-47 |
| Msa0854840 | Msa0935440 | 0.801902 | 7.231088e-49 | -8.615850e-47 |
| Msa0869660 | Msa0935440 | 0.914731 | 1.357936e-84 | -8.615850e-47 |
| Msa0903020 | Msa0935440 | 0.811681 | 6.200430e-51 | -8.615850e-47 |
| Msa0913550 | Msa0935440 | 0.815345 | 9.695379e-52 | -8.615850e-47 |
| Msa0918150 | Msa0935440 | 0.805802 | 1.119793e-49 | -8.615850e-47 |
| Msa0935440 | Msa0940780 | 0.811545 | 6.635244e-51 | -8.615850e-47 |
| Msa0935440 | Msa0972370 | 0.917095 | 8.052094e-86 | -8.615850e-47 |
| Msa0935440 | Msa0982560 | 0.821433 | 4.048898e-53 | -8.615850e-47 |
| Msa0935440 | Msa0990490 | 0.813493 | 2.489021e-51 | -8.615850e-47 |
| Msa0935440 | Msa0997840 | 0.816142 | 6.441340e-52 | -8.615850e-47 |
| Msa0935440 | Msa1022490 | 0.812537 | 4.033261e-51 | -8.615850e-47 |
| Msa0935440 | Msa1022510 | 0.816400 | 5.640472e-52 | -8.615850e-47 |
| Msa0935440 | Msa1024350 | 0.800989 | 1.112653e-48 | -8.615850e-47 |
| Msa0935440 | Msa1066150 | 0.818075 | 2.368642e-52 | -8.615850e-47 |
| Msa0935440 | Msa1106680 | 0.820548 | 6.471304e-53 | -8.615850e-47 |
| Msa0935440 | Msa1125190 | 0.800193 | 1.616609e-48 | -8.615850e-47 |
| Msa0935440 | Msa1179340 | 0.829708 | 4.425192e-55 | -8.615850e-47 |
| Msa0935440 | Msa1181090 | 0.802905 | 4.492950e-49 | -8.615850e-47 |
| Msa0935440 | Msa1218190 | 0.801761 | 7.730555e-49 | -8.615850e-47 |
| Msa0935440 | Msa1225890 | 0.822743 | 2.011868e-53 | -8.615850e-47 |
| Msa0935440 | Msa1275220 | 0.825380 | 4.839040e-54 | -8.615850e-47 |
| Msa0935440 | Msa1279750 | 0.800992 | 1.111176e-48 | -8.615850e-47 |
| Msa0935440 | Msa1309040 | 0.804899 | 1.731039e-49 | -8.615850e-47 |
| Msa0935440 | Msa1313720 | 0.810254 | 1.262714e-50 | -8.615850e-47 |
| Msa0935440 | Msa1459610 | 0.807741 | 4.358714e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935440 | MtrunA17_Chr6g0451281 | 82.578 | 419 | 3 | 3 | 1 | 349 | 1 | 419 | 0.0 | 682 |
| Msa0935440 | MtrunA17_Chr6g0451281 | 85.256 | 156 | 3 | 1 | 347 | 482 | 487 | 642 | 1.03e-81 | 265 |
| Msa0935440 | MtrunA17_Chr6g0451291 | 66.227 | 379 | 57 | 4 | 42 | 349 | 14 | 392 | 2.55e-174 | 503 |
| Msa0935440 | MtrunA17_Chr6g0451291 | 73.718 | 156 | 21 | 1 | 347 | 482 | 460 | 615 | 1.92e-70 | 235 |
| Msa0935440 | MtrunA17_Chr6g0451261 | 63.446 | 383 | 66 | 6 | 41 | 349 | 309 | 691 | 4.75e-156 | 466 |
| Msa0935440 | MtrunA17_Chr6g0451261 | 71.795 | 156 | 24 | 1 | 347 | 482 | 759 | 914 | 2.54e-67 | 232 |
| Msa0935440 | MtrunA17_Chr8g0392711 | 46.650 | 403 | 137 | 6 | 21 | 349 | 11 | 409 | 1.91e-113 | 347 |
| Msa0935440 | MtrunA17_Chr8g0392711 | 57.931 | 145 | 41 | 1 | 355 | 479 | 477 | 621 | 5.34e-48 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935440 | AT3G01420.1 | 58.838 | 413 | 98 | 5 | 9 | 349 | 4 | 416 | 1.23e-157 | 462 |
| Msa0935440 | AT3G01420.1 | 63.462 | 156 | 37 | 1 | 347 | 482 | 484 | 639 | 6.18e-60 | 208 |
| Msa0935440 | AT1G73680.1 | 50.250 | 400 | 126 | 6 | 21 | 349 | 11 | 408 | 1.56e-121 | 369 |
| Msa0935440 | AT1G73680.1 | 59.477 | 153 | 42 | 1 | 347 | 479 | 476 | 628 | 1.47e-52 | 187 |
| Msa0935440 | AT1G73680.2 | 48.655 | 409 | 128 | 7 | 21 | 349 | 11 | 417 | 3.45e-117 | 358 |
| Msa0935440 | AT1G73680.2 | 59.477 | 153 | 42 | 1 | 347 | 479 | 485 | 637 | 1.48e-52 | 188 |
| Msa0935440 | AT1G73680.3 | 48.621 | 290 | 85 | 3 | 124 | 349 | 10 | 299 | 7.50e-79 | 255 |
| Msa0935440 | AT1G73680.3 | 59.477 | 153 | 42 | 1 | 347 | 479 | 367 | 519 | 2.46e-53 | 187 |
| Msa0935440 | AT1G73680.4 | 46.063 | 254 | 73 | 3 | 160 | 349 | 1 | 254 | 5.35e-61 | 207 |
| Msa0935440 | AT1G73680.4 | 59.477 | 153 | 42 | 1 | 347 | 479 | 322 | 474 | 1.06e-53 | 187 |
Find 118 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATCTATGATGGACATTT+TGG | 0.143881 | 6_3:-5994138 | None:intergenic |
| TTGCCATACTCTTTGATTAA+TGG | 0.175379 | 6_3:-5998479 | None:intergenic |
| CTTCAAGTGCTTTCTCTGTT+TGG | 0.185040 | 6_3:+6000019 | Msa0935440:CDS |
| CTGCTGCATGGAAATCTTTA+TGG | 0.186496 | 6_3:-5994112 | None:intergenic |
| GCGATCAATCACATCCTTTA+AGG | 0.186959 | 6_3:-5999962 | None:intergenic |
| TCATGATACCTATCTCTAAA+TGG | 0.192004 | 6_3:+5999293 | Msa0935440:CDS |
| TCCACTCAATATGGAGTTTC+CGG | 0.219255 | 6_3:-5998309 | None:intergenic |
| AAGAAATTCAAGGACACATT+TGG | 0.271505 | 6_3:+5998281 | Msa0935440:intron |
| TTCAAGTGCTTTCTCTGTTT+GGG | 0.278891 | 6_3:+6000020 | Msa0935440:CDS |
| CTAGGAACACGCAAGTAAAT+TGG | 0.282392 | 6_3:-6000072 | None:intergenic |
| CATTGGTTTGCAACTTCTCT+TGG | 0.288806 | 6_3:-5997283 | None:intergenic |
| CATTGTGTTCTAGAACAAAA+AGG | 0.289303 | 6_3:-5997695 | None:intergenic |
| GAAGATGGAACAGCAATTTC+AGG | 0.297628 | 6_3:+5997630 | Msa0935440:CDS |
| GAACACAACTGAAACCTTAA+AGG | 0.315532 | 6_3:+5999948 | Msa0935440:CDS |
| CCATTGACAAGTTGGGAATA+TGG | 0.315604 | 6_3:+5994614 | Msa0935440:CDS |
| AATTCCTCAGTTAAAGAGTA+TGG | 0.325416 | 6_3:-5998368 | None:intergenic |
| GCCTACAAATCCACTCAATA+TGG | 0.327799 | 6_3:-5998318 | None:intergenic |
| GGAAGCCAAGGATCTTTCTT+TGG | 0.332821 | 6_3:+5994811 | Msa0935440:CDS |
| TGCTGTTTGTGATTCTCTTA+AGG | 0.334534 | 6_3:+5997716 | Msa0935440:CDS |
| GAGGAGCTTGATGTGCTTGT+AGG | 0.336400 | 6_3:+5999379 | Msa0935440:CDS |
| GGAATAGGGTTGTGTTTGTT+TGG | 0.345383 | 6_3:-6000051 | None:intergenic |
| AAATCTTCCCATTTAGAGAT+AGG | 0.346188 | 6_3:-5999301 | None:intergenic |
| TAGCAAGATATAACCAATTC+AGG | 0.346766 | 6_3:+5999260 | Msa0935440:CDS |
| GGCTAATATACTTGGCCATT+AGG | 0.361626 | 6_3:+5994659 | Msa0935440:CDS |
| ATTAATGGTGGAGATTTGTT+AGG | 0.367829 | 6_3:-5998464 | None:intergenic |
| CAGGTGACATTCGTAATAGT+TGG | 0.372460 | 6_3:+5997649 | Msa0935440:CDS |
| ACACGCAAGTAAATTGGAAT+AGG | 0.378099 | 6_3:-6000066 | None:intergenic |
| AGGGATGGAAGTGTGATATA+TGG | 0.378363 | 6_3:+5997522 | Msa0935440:intron |
| GTGGCCACCACCATTGGGTC+TGG | 0.383776 | 6_3:-5995775 | None:intergenic |
| TCTAGAGAGGAGAACATATA+AGG | 0.388770 | 6_3:+5995804 | Msa0935440:CDS |
| AGAAATTCAAGGACACATTT+GGG | 0.403597 | 6_3:+5998282 | Msa0935440:intron |
| TCTCTCAAATGCAGGAAATC+AGG | 0.404427 | 6_3:-5998422 | None:intergenic |
| AAGAACTTGAAAGATTTAAG+TGG | 0.407097 | 6_3:-5997307 | None:intergenic |
| TGAATAGTCCTCTCCTGAAT+TGG | 0.412126 | 6_3:-5999273 | None:intergenic |
| TATATTAGCCCTAAGAAAAC+AGG | 0.412840 | 6_3:-5994646 | None:intergenic |
| TCCATATTGAGTGGATTTGT+AGG | 0.413533 | 6_3:+5998317 | Msa0935440:CDS |
| ACACTGAAAAGGGTTTGAAA+TGG | 0.417583 | 6_3:+5999923 | Msa0935440:CDS |
| TTTCTTAGGGCTAATATACT+TGG | 0.423557 | 6_3:+5994651 | Msa0935440:CDS |
| CATGGCAGAGAAGAAGATAA+AGG | 0.425013 | 6_3:+5999405 | Msa0935440:CDS |
| AAGGACACATTTGGGCATTC+CGG | 0.430582 | 6_3:+5998290 | Msa0935440:CDS |
| TGAGGAGACATACACTGAAA+AGG | 0.432708 | 6_3:+5999912 | Msa0935440:CDS |
| TTAATGTGATTGCAGCATCT+TGG | 0.433235 | 6_3:+5995842 | Msa0935440:CDS |
| GGAAGATTTAACAGATGATA+AGG | 0.434509 | 6_3:+5999315 | Msa0935440:CDS |
| CATGATACCTATCTCTAAAT+GGG | 0.437524 | 6_3:+5999294 | Msa0935440:CDS |
| CATTGATGAGATTGTACTCT+TGG | 0.439382 | 6_3:-5994693 | None:intergenic |
| CACTGAAAAGGGTTTGAAAT+GGG | 0.443308 | 6_3:+5999924 | Msa0935440:CDS |
| ACACGATTGGATAGATCATA+TGG | 0.443336 | 6_3:+5995879 | Msa0935440:CDS |
| AGGTGACATTCGTAATAGTT+GGG | 0.444834 | 6_3:+5997650 | Msa0935440:CDS |
| AGATCTTCATCTTCCAAGTC+CGG | 0.445170 | 6_3:-5997898 | None:intergenic |
| AAAGTATTGGAAGAGATCTA+TGG | 0.453437 | 6_3:+5999346 | Msa0935440:CDS |
| CTAACTTAAATTGATTAACT+AGG | 0.455907 | 6_3:-6000090 | None:intergenic |
| CTTCCATCAGCAGTTCTGTA+TGG | 0.468141 | 6_3:-5994760 | None:intergenic |
| GATCCTTTCAATGAAAATGC+TGG | 0.470379 | 6_3:+5994790 | Msa0935440:CDS |
| TGGAAGCAATCAAGAAGTAT+TGG | 0.471615 | 6_3:+5997542 | Msa0935440:CDS |
| GAACAACACCTGTAGGGGTT+AGG | 0.472979 | 6_3:+5994719 | Msa0935440:CDS |
| GGTGGAGATTTGTTAGGCCC+AGG | 0.474083 | 6_3:-5998458 | None:intergenic |
| TTAGAAGGAATACCCGGACT+TGG | 0.474562 | 6_3:+5997885 | Msa0935440:intron |
| TTCTGCCAAAGAAAGATCCT+TGG | 0.475376 | 6_3:-5994816 | None:intergenic |
| TAAGGAAGTAATCAAAGTAT+TGG | 0.476469 | 6_3:+5999333 | Msa0935440:CDS |
| TGTACACTCCATTGACAAGT+TGG | 0.477814 | 6_3:+5994606 | Msa0935440:CDS |
| TGAAAGATTTAAGTGGGCAT+TGG | 0.483896 | 6_3:-5997300 | None:intergenic |
| GAGGAGACATACACTGAAAA+GGG | 0.487965 | 6_3:+5999913 | Msa0935440:CDS |
| CCATATTCCCAACTTGTCAA+TGG | 0.488054 | 6_3:-5994614 | None:intergenic |
| GTTTATAGGGATAGAGAGAG+AGG | 0.488250 | 6_3:+5999235 | Msa0935440:intron |
| GAACTTCTTCATAATGAAGA+TGG | 0.489125 | 6_3:+5997615 | Msa0935440:CDS |
| TTCAATTCATGATACACGAT+TGG | 0.494349 | 6_3:+5995866 | Msa0935440:CDS |
| ATGGCAGAGAAGAAGATAAA+GGG | 0.494420 | 6_3:+5999406 | Msa0935440:CDS |
| ATAGGGTTGTGTTTGTTTGG+TGG | 0.495064 | 6_3:-6000048 | None:intergenic |
| TCTTTATCGCTATGCTAGAC+TGG | 0.496710 | 6_3:+5997918 | Msa0935440:CDS |
| CCATACTCTTTGATTAATGG+TGG | 0.497692 | 6_3:-5998476 | None:intergenic |
| CACGCAAGTAAATTGGAATA+GGG | 0.499528 | 6_3:-6000065 | None:intergenic |
| GACATTCGTAATAGTTGGGC+TGG | 0.499613 | 6_3:+5997654 | Msa0935440:CDS |
| GTACACTCCATTGACAAGTT+GGG | 0.500923 | 6_3:+5994607 | Msa0935440:CDS |
| GAAGAGAAAAGCATCTATGA+TGG | 0.506068 | 6_3:-5994147 | None:intergenic |
| GTTCTGTATGGAAAATCAGT+AGG | 0.514586 | 6_3:-5994748 | None:intergenic |
| AATGAAAATGCTGGAAGCCA+AGG | 0.521235 | 6_3:+5994799 | Msa0935440:CDS |
| TTTCCATACAGAACTGCTGA+TGG | 0.525073 | 6_3:+5994757 | Msa0935440:CDS |
| GATCTTCATCTTCCAAGTCC+GGG | 0.528153 | 6_3:-5997897 | None:intergenic |
| AGAACTTGAAAGATTTAAGT+GGG | 0.531545 | 6_3:-5997306 | None:intergenic |
| TGATGTGCTTGTAGGTCTCA+TGG | 0.533097 | 6_3:+5999387 | Msa0935440:CDS |
| ATGTTGGAACAACACCTGTA+GGG | 0.533992 | 6_3:+5994713 | Msa0935440:CDS |
| CAGATGTGTCTCTCAAATGC+AGG | 0.534010 | 6_3:-5998430 | None:intergenic |
| TGCAGGAAATCAGGCAGGAG+TGG | 0.534116 | 6_3:-5998413 | None:intergenic |
| ATTATTGGGAAAGAAATTCA+AGG | 0.534335 | 6_3:+5998271 | Msa0935440:intron |
| GAGACACATCTGCCTCCCCT+GGG | 0.536799 | 6_3:+5998441 | Msa0935440:CDS |
| TTGGTGAAGATGTCTCCTAA+TGG | 0.538800 | 6_3:-5994674 | None:intergenic |
| GGGTTTGACCTAACCCCTAC+AGG | 0.542080 | 6_3:-5994727 | None:intergenic |
| GTGGAGATTTGTTAGGCCCA+GGG | 0.557871 | 6_3:-5998457 | None:intergenic |
| AATGTTGGAACAACACCTGT+AGG | 0.566767 | 6_3:+5994712 | Msa0935440:CDS |
| TGGCAAAATCAAAATATCAA+AGG | 0.575256 | 6_3:+5997587 | Msa0935440:CDS |
| TCCGGAAACTCCATATTGAG+TGG | 0.576740 | 6_3:+5998308 | Msa0935440:CDS |
| GAGTACAATCTCATCAATGT+TGG | 0.579079 | 6_3:+5994697 | Msa0935440:CDS |
| TCAAATGCAGGAAATCAGGC+AGG | 0.582700 | 6_3:-5998418 | None:intergenic |
| ATGAAGAGAGCAGAAAATCA+TGG | 0.584968 | 6_3:+5998341 | Msa0935440:CDS |
| AGGAGAACATATAAGGACAC+AGG | 0.590610 | 6_3:+5995811 | Msa0935440:CDS |
| TTCTGTATGGAAAATCAGTA+GGG | 0.594749 | 6_3:-5994747 | None:intergenic |
| TCATATGGAAGACACTCAGC+AGG | 0.595518 | 6_3:+5995894 | Msa0935440:CDS |
| AAAATCAAAATATCAAAGGA+AGG | 0.597631 | 6_3:+5997591 | Msa0935440:CDS |
| GCCCTAAGAAAACAGGCATA+CGG | 0.598987 | 6_3:-5994639 | None:intergenic |
| AAAGTGAGGACTTTCAAAGA+TGG | 0.602412 | 6_3:+5997567 | Msa0935440:CDS |
| AAGAAGTATTGGACAAAGTG+AGG | 0.610700 | 6_3:+5997553 | Msa0935440:CDS |
| ATTTGTTATTATAGACCACA+TGG | 0.614110 | 6_3:-5994048 | None:intergenic |
| GGAAATCTTTATGGATGGCA+TGG | 0.619057 | 6_3:-5994103 | None:intergenic |
| TGGAGATTTGTTAGGCCCAG+GGG | 0.619449 | 6_3:-5998456 | None:intergenic |
| TGTTGGAACAACACCTGTAG+GGG | 0.624930 | 6_3:+5994714 | Msa0935440:CDS |
| GAAACCAGACCCAATGGTGG+TGG | 0.626280 | 6_3:+5995771 | Msa0935440:CDS |
| TGTTCCATACTCTTTAACTG+AGG | 0.627621 | 6_3:+5998364 | Msa0935440:CDS |
| ACTCTATTAGAAGGAATACC+CGG | 0.628811 | 6_3:+5997879 | Msa0935440:intron |
| TTTCACAAGCAACTACAATG+AGG | 0.638322 | 6_3:+5999894 | Msa0935440:CDS |
| GATCTATGGTGATGATGTTG+AGG | 0.639862 | 6_3:+5999360 | Msa0935440:CDS |
| GTTGTTGAAACCAGACCCAA+TGG | 0.642194 | 6_3:+5995765 | Msa0935440:intron |
| TGCATGGAAATCTTTATGGA+TGG | 0.643118 | 6_3:-5994108 | None:intergenic |
| AGATTTGTTAGGCCCAGGGG+AGG | 0.649803 | 6_3:-5998453 | None:intergenic |
| TAAAGATTTCCATGCAGCAG+TGG | 0.658664 | 6_3:+5994115 | Msa0935440:CDS |
| AGATATAACCAATTCAGGAG+AGG | 0.663971 | 6_3:+5999265 | Msa0935440:CDS |
| TGGCCACAAAACTTCTAGAG+AGG | 0.664169 | 6_3:+5995791 | Msa0935440:CDS |
| GGAGAACATATAAGGACACA+GGG | 0.666023 | 6_3:+5995812 | Msa0935440:CDS |
| GTTGAAACCAGACCCAATGG+TGG | 0.761180 | 6_3:+5995768 | Msa0935440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAATAATAAAAATT+TGG | + | chr6_3:5995930-5995949 | Msa0935440:intron | 0.0% |
| !! | TTTAAATATATAATAATATA+AGG | - | chr6_3:5996972-5996991 | None:intergenic | 0.0% |
| !! | AAATATTGTTAGTATTATAT+TGG | + | chr6_3:5994954-5994973 | Msa0935440:intron | 10.0% |
| !! | AAAATTATATATAAAACTAG+AGG | + | chr6_3:5995258-5995277 | Msa0935440:intron | 10.0% |
| !!! | TTTTTATTTATATTAGAGAT+CGG | - | chr6_3:5996663-5996682 | None:intergenic | 10.0% |
| !!! | TCTATTTTTTTTTTTTTTGA+AGG | - | chr6_3:5996714-5996733 | None:intergenic | 10.0% |
| !! | TCATCTAAAAAATTATTAAA+TGG | + | chr6_3:5996933-5996952 | Msa0935440:intron | 10.0% |
| !! | ATATAATAATATAAGGTTAT+TGG | - | chr6_3:5996965-5996984 | None:intergenic | 10.0% |
| !! | ATTTAACTCTAAATTATATA+TGG | + | chr6_3:5997434-5997453 | Msa0935440:intron | 10.0% |
| !!! | ATTACCATTAAAATTTTATA+AGG | - | chr6_3:5999579-5999598 | None:intergenic | 10.0% |
| !!! | TAAAATTTTAATGGTAATTT+TGG | + | chr6_3:5999581-5999600 | Msa0935440:intron | 10.0% |
| !! | GATAACAAAAACAATATATA+TGG | - | chr6_3:5994200-5994219 | None:intergenic | 15.0% |
| !!! | TATTTACTAAAGTATCAAAA+TGG | + | chr6_3:5994452-5994471 | Msa0935440:intron | 15.0% |
| !! | TAAAGTAAATTACTATACAA+AGG | - | chr6_3:5994539-5994558 | None:intergenic | 15.0% |
| !! | AAAATTGAAAATTACACTAT+TGG | + | chr6_3:5994872-5994891 | Msa0935440:intron | 15.0% |
| !! | TAGATATAAAGTTTATTTGA+TGG | - | chr6_3:5995033-5995052 | None:intergenic | 15.0% |
| !!! | GTATAGTTTACTTTTTTTTA+GGG | - | chr6_3:5995056-5995075 | None:intergenic | 15.0% |
| !!! | TGTATAGTTTACTTTTTTTT+AGG | - | chr6_3:5995057-5995076 | None:intergenic | 15.0% |
| !! | AAATTAGTCAACAAAAATTA+AGG | + | chr6_3:5995108-5995127 | Msa0935440:intron | 15.0% |
| !! | GATGATACAAAAAAAAAATT+AGG | + | chr6_3:5995402-5995421 | Msa0935440:intron | 15.0% |
| !!! | ATTTCTTTCTTTGATAATTA+AGG | - | chr6_3:5995499-5995518 | None:intergenic | 15.0% |
| !! | GAAAAAGATTAGAAAATTTA+AGG | - | chr6_3:5996381-5996400 | None:intergenic | 15.0% |
| !!! | ACTAATATACTCTTTTTTAA+CGG | - | chr6_3:5996862-5996881 | None:intergenic | 15.0% |
| !!! | CAATTTAATTTAGTGTTAAA+AGG | + | chr6_3:5997104-5997123 | Msa0935440:intron | 15.0% |
| !! | AAATGAAACTATATGATAAT+AGG | + | chr6_3:5997502-5997521 | Msa0935440:intron | 15.0% |
| !! | AATGAAACTATATGATAATA+GGG | + | chr6_3:5997503-5997522 | Msa0935440:intron | 15.0% |
| !!! | AATAAAATCTCTATTTTGTA+TGG | + | chr6_3:5998681-5998700 | Msa0935440:intron | 15.0% |
| !!! | TAATTCAAATTTTCCTTTTT+TGG | - | chr6_3:5998993-5999012 | None:intergenic | 15.0% |
| !! | ACTTACACATAAAATAAAAA+CGG | - | chr6_3:5999174-5999193 | None:intergenic | 15.0% |
| !! | TTATAATGTGATCATATAAA+TGG | + | chr6_3:5999208-5999227 | Msa0935440:intron | 15.0% |
| !!! | TAGTCCTTATAAAATTTTAA+TGG | + | chr6_3:5999572-5999591 | Msa0935440:intron | 15.0% |
| !! | TACAAAATACAATATTATAG+AGG | - | chr6_3:5999608-5999627 | None:intergenic | 15.0% |
| !!! | ATGTGAATAATTTTTTTGTA+AGG | + | chr6_3:5999717-5999736 | Msa0935440:intron | 15.0% |
| !!! | CTTTTATATCTAAATGTTTA+GGG | + | chr6_3:5999794-5999813 | Msa0935440:intron | 15.0% |
| !!! | TTTGAAATGAGAGTTTTAAT+GGG | - | chr6_3:5994074-5994093 | None:intergenic | 20.0% |
| !!! | ATTTGAAATGAGAGTTTTAA+TGG | - | chr6_3:5994075-5994094 | None:intergenic | 20.0% |
| !! | AATTATCAAGGATTAAAGTA+TGG | - | chr6_3:5994225-5994244 | None:intergenic | 20.0% |
| !! | ATGTAATTAGTTAGTATAGT+TGG | - | chr6_3:5994507-5994526 | None:intergenic | 20.0% |
| !!! | ACCACTAATTACATTTTTTA+TGG | + | chr6_3:5994570-5994589 | Msa0935440:intron | 20.0% |
| !! | ACCATAAAAAATGTAATTAG+TGG | - | chr6_3:5994574-5994593 | None:intergenic | 20.0% |
| !! | TGTTAGTATTATATTGGAAA+TGG | + | chr6_3:5994960-5994979 | Msa0935440:intron | 20.0% |
| !! | GATACAAAAAAAAAATTAGG+AGG | + | chr6_3:5995405-5995424 | Msa0935440:intron | 20.0% |
| !! | AAATTCATCTTCAAAATTTG+TGG | - | chr6_3:5995438-5995457 | None:intergenic | 20.0% |
| !!! | CATAAACACAATATTTTTCT+TGG | - | chr6_3:5995743-5995762 | None:intergenic | 20.0% |
| !! | TTAAAATTTGTCAATTCTCT+TGG | + | chr6_3:5996187-5996206 | Msa0935440:intron | 20.0% |
| !! | TAAAATTTGTCAATTCTCTT+GGG | + | chr6_3:5996188-5996207 | Msa0935440:intron | 20.0% |
| !! | TTTAGACTTTATTAACATCT+TGG | - | chr6_3:5996218-5996237 | None:intergenic | 20.0% |
| !! | TAAGAATCTCTAAACATAAT+TGG | - | chr6_3:5996254-5996273 | None:intergenic | 20.0% |
| !!! | GTCATCATTAACATTTTTTT+AGG | + | chr6_3:5996331-5996350 | Msa0935440:intron | 20.0% |
| !! | TATGAAATTAGAATAACGTT+AGG | - | chr6_3:5996440-5996459 | None:intergenic | 20.0% |
| !!! | TTTCATATACTAGTCTTTTT+AGG | + | chr6_3:5996453-5996472 | Msa0935440:intron | 20.0% |
| !!! | AATTTTACACGTTATATCTT+TGG | + | chr6_3:5996529-5996548 | Msa0935440:intron | 20.0% |
| !!! | ATTCTAGAGTAAAACAATAT+GGG | - | chr6_3:5997077-5997096 | None:intergenic | 20.0% |
| !!! | TATTCTAGAGTAAAACAATA+TGG | - | chr6_3:5997078-5997097 | None:intergenic | 20.0% |
| !! | TAAATTGTATAAGTACACTT+AGG | - | chr6_3:5997154-5997173 | None:intergenic | 20.0% |
| !!! | TGGTAAGAATATTTCTAAAT+CGG | + | chr6_3:5997400-5997419 | Msa0935440:intron | 20.0% |
| !! | AAAATCAAAATATCAAAGGA+AGG | + | chr6_3:5997591-5997610 | Msa0935440:CDS | 20.0% |
| !! | TCAACATAAGAAAAAACTAT+CGG | - | chr6_3:5998201-5998220 | None:intergenic | 20.0% |
| !!! | ACTAAAAGTTTAACTGTTTT+AGG | + | chr6_3:5998243-5998262 | Msa0935440:intron | 20.0% |
| !!! | ATTCTTCTCTTAAAGTATTT+AGG | + | chr6_3:5998627-5998646 | Msa0935440:intron | 20.0% |
| !!! | TATTTTGTATGGTATTACAT+AGG | + | chr6_3:5998692-5998711 | Msa0935440:intron | 20.0% |
| !!! | AAATATAGTAGCTTTTGTAT+TGG | - | chr6_3:5999060-5999079 | None:intergenic | 20.0% |
| !!! | TGAAATGGTCTTAAAAATAA+GGG | - | chr6_3:5999123-5999142 | None:intergenic | 20.0% |
| !!! | ATGAAATGGTCTTAAAAATA+AGG | - | chr6_3:5999124-5999143 | None:intergenic | 20.0% |
| !!! | AGACCATTTCATAATTTTTT+AGG | + | chr6_3:5999132-5999151 | Msa0935440:intron | 20.0% |
| !!! | GACCATTTCATAATTTTTTA+GGG | + | chr6_3:5999133-5999152 | Msa0935440:intron | 20.0% |
| !! | AACCCTAAAAAATTATGAAA+TGG | - | chr6_3:5999138-5999157 | None:intergenic | 20.0% |
| !! | AAAACATATTTAACCCTAAA+AGG | - | chr6_3:5999521-5999540 | None:intergenic | 20.0% |
| !!! | AATTTTATAAGGACTAAACT+TGG | - | chr6_3:5999568-5999587 | None:intergenic | 20.0% |
| !!! | TGTAAAAAGTTTTCAAAACA+TGG | - | chr6_3:5999639-5999658 | None:intergenic | 20.0% |
| !!! | GTCCTTATTTGTATTTTATA+GGG | - | chr6_3:5999694-5999713 | None:intergenic | 20.0% |
| !!! | AGTCCTTATTTGTATTTTAT+AGG | - | chr6_3:5999695-5999714 | None:intergenic | 20.0% |
| !! | ACATTTAGATATAAAAGGTA+GGG | - | chr6_3:5999791-5999810 | None:intergenic | 20.0% |
| !! | AACATTTAGATATAAAAGGT+AGG | - | chr6_3:5999792-5999811 | None:intergenic | 20.0% |
| !! | CCTAAACATTTAGATATAAA+AGG | - | chr6_3:5999796-5999815 | None:intergenic | 20.0% |
| !!! | CCTTTTATATCTAAATGTTT+AGG | + | chr6_3:5999793-5999812 | Msa0935440:intron | 20.0% |
| !! | TGAAATTTAATGTACTTTAC+AGG | + | chr6_3:5999851-5999870 | Msa0935440:intron | 20.0% |
| !!! | TGAAGAAAAGTATTTGTACA+AGG | - | chr6_3:5994172-5994191 | None:intergenic | 25.0% |
| !! | ATCCTTGATAATTGAGAATA+TGG | + | chr6_3:5994232-5994251 | Msa0935440:intron | 25.0% |
| ! | ATCCATATTCTCAATTATCA+AGG | - | chr6_3:5994237-5994256 | None:intergenic | 25.0% |
| !! | GTGTTTTTCTTTATAGAACT+AGG | + | chr6_3:5994278-5994297 | Msa0935440:intron | 25.0% |
| !! | TTTTTCTTTATAGAACTAGG+TGG | + | chr6_3:5994281-5994300 | Msa0935440:intron | 25.0% |
| ! | ACAGTTATAACCTAGTTTAT+AGG | + | chr6_3:5994347-5994366 | Msa0935440:intron | 25.0% |
| ! | CAGTTATAACCTAGTTTATA+GGG | + | chr6_3:5994348-5994367 | Msa0935440:intron | 25.0% |
| !! | TTATATTTTACGAGAGAGAA+GGG | - | chr6_3:5995084-5995103 | None:intergenic | 25.0% |
| !! | TTTATATTTTACGAGAGAGA+AGG | - | chr6_3:5995085-5995104 | None:intergenic | 25.0% |
| !!! | ACTCATTTTTGCTTACTTTT+TGG | + | chr6_3:5995173-5995192 | Msa0935440:intron | 25.0% |
| !!! | CTCATTTTTGCTTACTTTTT+GGG | + | chr6_3:5995174-5995193 | Msa0935440:intron | 25.0% |
| !! | TTTTTGTATCATCTCCAAAA+AGG | - | chr6_3:5995395-5995414 | None:intergenic | 25.0% |
| !! | GCTAATTAATGAACCTTTTT+CGG | + | chr6_3:5995559-5995578 | Msa0935440:intron | 25.0% |
| !! | TTCATGTGCTTTTATATTCA+AGG | - | chr6_3:5995602-5995621 | None:intergenic | 25.0% |
| !! | TATACTCATCATAGTGTTTT+TGG | - | chr6_3:5995672-5995691 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTGAATATGTCAT+CGG | + | chr6_3:5996026-5996045 | Msa0935440:intron | 25.0% |
| ! | GATATAACGTGTAAAATTCA+AGG | - | chr6_3:5996527-5996546 | None:intergenic | 25.0% |
| !! | TTTCTTTTTGTATTCGAGAT+CGG | + | chr6_3:5996784-5996803 | Msa0935440:intron | 25.0% |
| ! | TTTCCATAGAATGTATTAAG+TGG | + | chr6_3:5997005-5997024 | Msa0935440:intron | 25.0% |
| ! | TTCCATAGAATGTATTAAGT+GGG | + | chr6_3:5997006-5997025 | Msa0935440:intron | 25.0% |
| !!! | AAGAACTATTCATGTTTTAG+CGG | - | chr6_3:5997034-5997053 | None:intergenic | 25.0% |
| ! | AGAACTTGAAAGATTTAAGT+GGG | - | chr6_3:5997309-5997328 | None:intergenic | 25.0% |
| ! | AAGAACTTGAAAGATTTAAG+TGG | - | chr6_3:5997310-5997329 | None:intergenic | 25.0% |
| !! | GGTAAGAATATTTCTAAATC+GGG | + | chr6_3:5997401-5997420 | Msa0935440:intron | 25.0% |
| ! | CAATTAAAAGGTCTTACATT+GGG | - | chr6_3:5997461-5997480 | None:intergenic | 25.0% |
| ! | TCAATTAAAAGGTCTTACAT+TGG | - | chr6_3:5997462-5997481 | None:intergenic | 25.0% |
| ! | AAACTATATGATAATAGGGA+TGG | + | chr6_3:5997507-5997526 | Msa0935440:intron | 25.0% |
| ! | TGGCAAAATCAAAATATCAA+AGG | + | chr6_3:5997587-5997606 | Msa0935440:CDS | 25.0% |
| !!! | ATTGTGTTCTAGAACAAAAA+GGG | - | chr6_3:5997697-5997716 | None:intergenic | 25.0% |
| ! | GATAATTGAACTCTATTAGA+AGG | + | chr6_3:5997870-5997889 | Msa0935440:intron | 25.0% |
| ! | TTCATATACGTCTCATATTA+TGG | + | chr6_3:5998073-5998092 | Msa0935440:intron | 25.0% |
| ! | TCATATACGTCTCATATTAT+GGG | + | chr6_3:5998074-5998093 | Msa0935440:intron | 25.0% |
| !!! | AAGTTTAACTGTTTTAGGTA+TGG | + | chr6_3:5998248-5998267 | Msa0935440:intron | 25.0% |
| !!! | TGTTTTAGGTATGGATTATT+GGG | + | chr6_3:5998257-5998276 | Msa0935440:intron | 25.0% |
| ! | ATTATTGGGAAAGAAATTCA+AGG | + | chr6_3:5998271-5998290 | Msa0935440:intron | 25.0% |
| ! | TCAAAAACAATTGGTATCAA+TGG | + | chr6_3:5998774-5998793 | Msa0935440:intron | 25.0% |
| ! | CAAAAACAATTGGTATCAAT+GGG | + | chr6_3:5998775-5998794 | Msa0935440:intron | 25.0% |
| ! | ATATAAATGGTGCAGTTTAT+AGG | + | chr6_3:5999221-5999240 | Msa0935440:intron | 25.0% |
| ! | TATAAATGGTGCAGTTTATA+GGG | + | chr6_3:5999222-5999241 | Msa0935440:intron | 25.0% |
| ! | TAAGGAAGTAATCAAAGTAT+TGG | + | chr6_3:5999333-5999352 | Msa0935440:CDS | 25.0% |
| !!! | TTTTTTAATCTTCCTTCTCA+TGG | + | chr6_3:5999450-5999469 | Msa0935440:intron | 25.0% |
| !! | ATATGATGTCTATACCTTTT+AGG | + | chr6_3:5999504-5999523 | Msa0935440:intron | 25.0% |
| !! | TATGATGTCTATACCTTTTA+GGG | + | chr6_3:5999505-5999524 | Msa0935440:intron | 25.0% |
| !!! | TGGAAACTTGTGATTTTTTA+GGG | - | chr6_3:5999548-5999567 | None:intergenic | 25.0% |
| !!! | TTGGAAACTTGTGATTTTTT+AGG | - | chr6_3:5999549-5999568 | None:intergenic | 25.0% |
| ! | GTCCCTATAAAATACAAATA+AGG | + | chr6_3:5999689-5999708 | Msa0935440:intron | 25.0% |
| !!! | TTTTTTGTAAGGACTAAACT+TGG | + | chr6_3:5999728-5999747 | Msa0935440:intron | 25.0% |
| !! | TTGGAAGCTTGTAATTTTAT+AGG | + | chr6_3:5999747-5999766 | Msa0935440:intron | 25.0% |
| !! | TGGAAGCTTGTAATTTTATA+GGG | + | chr6_3:5999748-5999767 | Msa0935440:intron | 25.0% |
| !! | ATATCTAAATGTTTAGGGTT+AGG | + | chr6_3:5999799-5999818 | Msa0935440:intron | 25.0% |
| !! | TATCTAAATGTTTAGGGTTA+GGG | + | chr6_3:5999800-5999819 | Msa0935440:intron | 25.0% |
| ! | AATTTAATGTACTTTACAGG+AGG | + | chr6_3:5999854-5999873 | Msa0935440:intron | 25.0% |
| TGATTCAAACCCTATAAACT+AGG | - | chr6_3:5994360-5994379 | None:intergenic | 30.0% | |
| TAGTTTATAGGGTTTGAATC+AGG | + | chr6_3:5994359-5994378 | Msa0935440:intron | 30.0% | |
| TATATTAGCCCTAAGAAAAC+AGG | - | chr6_3:5994649-5994668 | None:intergenic | 30.0% | |
| TTTCTTAGGGCTAATATACT+TGG | + | chr6_3:5994651-5994670 | Msa0935440:CDS | 30.0% | |
| TTCTGTATGGAAAATCAGTA+GGG | - | chr6_3:5994750-5994769 | None:intergenic | 30.0% | |
| ! | TTATTTGATGGCTTAAGTGA+GGG | - | chr6_3:5995021-5995040 | None:intergenic | 30.0% |
| ! | TTTATTTGATGGCTTAAGTG+AGG | - | chr6_3:5995022-5995041 | None:intergenic | 30.0% |
| AAAAAAGAGCTAACCGAAAA+AGG | - | chr6_3:5995575-5995594 | None:intergenic | 30.0% | |
| TTCAATTCATGATACACGAT+TGG | + | chr6_3:5995866-5995885 | Msa0935440:CDS | 30.0% | |
| GAAATTAGAATAACGTTAGG+TGG | - | chr6_3:5996437-5996456 | None:intergenic | 30.0% | |
| ATCCCACTTAATACATTCTA+TGG | - | chr6_3:5997011-5997030 | None:intergenic | 30.0% | |
| TTCTTAGTCATTCTTCTCTA+TGG | + | chr6_3:5997049-5997068 | Msa0935440:intron | 30.0% | |
| TAGAAATATTCTTACCACCA+AGG | - | chr6_3:5997397-5997416 | None:intergenic | 30.0% | |
| CGTGTGTAAGTTCAATTAAA+AGG | - | chr6_3:5997473-5997492 | None:intergenic | 30.0% | |
| GAACTTCTTCATAATGAAGA+TGG | + | chr6_3:5997615-5997634 | Msa0935440:CDS | 30.0% | |
| !! | CATTGTGTTCTAGAACAAAA+AGG | - | chr6_3:5997698-5997717 | None:intergenic | 30.0% |
| !! | CTGTTTTAGGTATGGATTAT+TGG | + | chr6_3:5998256-5998275 | Msa0935440:intron | 30.0% |
| AAGAAATTCAAGGACACATT+TGG | + | chr6_3:5998281-5998300 | Msa0935440:intron | 30.0% | |
| AGAAATTCAAGGACACATTT+GGG | + | chr6_3:5998282-5998301 | Msa0935440:intron | 30.0% | |
| AATTCCTCAGTTAAAGAGTA+TGG | - | chr6_3:5998371-5998390 | None:intergenic | 30.0% | |
| ! | ATTAATGGTGGAGATTTGTT+AGG | - | chr6_3:5998467-5998486 | None:intergenic | 30.0% |
| TTGCCATACTCTTTGATTAA+TGG | - | chr6_3:5998482-5998501 | None:intergenic | 30.0% | |
| ATCATAACTATTACGCACTT+CGG | + | chr6_3:5998522-5998541 | Msa0935440:intron | 30.0% | |
| ! | TCTCTTAAAGTATTTAGGAC+CGG | + | chr6_3:5998632-5998651 | Msa0935440:intron | 30.0% |
| ATTCCTATGAACGATTTGAT+CGG | + | chr6_3:5998715-5998734 | Msa0935440:intron | 30.0% | |
| GATAGGAGTTCAAAAACAAT+TGG | + | chr6_3:5998765-5998784 | Msa0935440:intron | 30.0% | |
| !!! | TGAACCACACCTTTATTTTT+AGG | + | chr6_3:5998927-5998946 | Msa0935440:intron | 30.0% |
| !!! | GAACCACACCTTTATTTTTA+GGG | + | chr6_3:5998928-5998947 | Msa0935440:intron | 30.0% |
| TAACAGGACCCTAAAAATAA+AGG | - | chr6_3:5998939-5998958 | None:intergenic | 30.0% | |
| !!! | TTTTAGGGTTACATATGCAT+AGG | + | chr6_3:5999148-5999167 | Msa0935440:intron | 30.0% |
| TAGCAAGATATAACCAATTC+AGG | + | chr6_3:5999260-5999279 | Msa0935440:CDS | 30.0% | |
| TCATGATACCTATCTCTAAA+TGG | + | chr6_3:5999293-5999312 | Msa0935440:CDS | 30.0% | |
| CATGATACCTATCTCTAAAT+GGG | + | chr6_3:5999294-5999313 | Msa0935440:CDS | 30.0% | |
| AAATCTTCCCATTTAGAGAT+AGG | - | chr6_3:5999304-5999323 | None:intergenic | 30.0% | |
| GGAAGATTTAACAGATGATA+AGG | + | chr6_3:5999315-5999334 | Msa0935440:CDS | 30.0% | |
| !! | AAAGTATTGGAAGAGATCTA+TGG | + | chr6_3:5999346-5999365 | Msa0935440:CDS | 30.0% |
| !!! | GTATTTTATAGGGACTAGTT+TGG | - | chr6_3:5999684-5999703 | None:intergenic | 30.0% |
| !!! | ACCATTTGTGTGTCATTTTT+GGG | - | chr6_3:5999993-6000012 | None:intergenic | 30.0% |
| !!! | AACCATTTGTGTGTCATTTT+TGG | - | chr6_3:5999994-6000013 | None:intergenic | 30.0% |
| TGCATGGAAATCTTTATGGA+TGG | - | chr6_3:5994111-5994130 | None:intergenic | 35.0% | |
| !!! | AGCATCTATGATGGACATTT+TGG | - | chr6_3:5994141-5994160 | None:intergenic | 35.0% |
| !! | GAAGAGAAAAGCATCTATGA+TGG | - | chr6_3:5994150-5994169 | None:intergenic | 35.0% |
| TCAAATTGTTAGCGCAGTAA+TGG | + | chr6_3:5994256-5994275 | Msa0935440:intron | 35.0% | |
| GTGGATAAGTCTATAGAACA+AGG | + | chr6_3:5994300-5994319 | Msa0935440:intron | 35.0% | |
| GATAAGTCTATAGAACAAGG+TGG | + | chr6_3:5994303-5994322 | Msa0935440:intron | 35.0% | |
| CATTGATGAGATTGTACTCT+TGG | - | chr6_3:5994696-5994715 | None:intergenic | 35.0% | |
| GAGTACAATCTCATCAATGT+TGG | + | chr6_3:5994697-5994716 | Msa0935440:CDS | 35.0% | |
| GTTCTGTATGGAAAATCAGT+AGG | - | chr6_3:5994751-5994770 | None:intergenic | 35.0% | |
| GATCCTTTCAATGAAAATGC+TGG | + | chr6_3:5994790-5994809 | Msa0935440:CDS | 35.0% | |
| ! | CTTCCAGCATTTTCATTGAA+AGG | - | chr6_3:5994796-5994815 | None:intergenic | 35.0% |
| GAGTTAGTAACAATAGTCAG+TGG | - | chr6_3:5994994-5995013 | None:intergenic | 35.0% | |
| ! | TATTTGATGGCTTAAGTGAG+GGG | - | chr6_3:5995020-5995039 | None:intergenic | 35.0% |
| ACACATGAATAGAATGCAAG+CGG | + | chr6_3:5995348-5995367 | Msa0935440:intron | 35.0% | |
| TCTATAGAGCTTCTTTCAAC+AGG | + | chr6_3:5995465-5995484 | Msa0935440:intron | 35.0% | |
| ! | GCTAACCTTTTATTCGGTTT+CGG | - | chr6_3:5995645-5995664 | None:intergenic | 35.0% |
| ! | GGTGTAGCTAACCTTTTATT+CGG | - | chr6_3:5995651-5995670 | None:intergenic | 35.0% |
| TCTAGAGAGGAGAACATATA+AGG | + | chr6_3:5995804-5995823 | Msa0935440:CDS | 35.0% | |
| TTAATGTGATTGCAGCATCT+TGG | + | chr6_3:5995842-5995861 | Msa0935440:CDS | 35.0% | |
| ACACGATTGGATAGATCATA+TGG | + | chr6_3:5995879-5995898 | Msa0935440:CDS | 35.0% | |
| AGACATTCATTCTTGCTACT+TGG | + | chr6_3:5995955-5995974 | Msa0935440:intron | 35.0% | |
| !! | TGTTTTGAATATGTCATCGG+TGG | + | chr6_3:5996029-5996048 | Msa0935440:intron | 35.0% |
| TGAAAGATTTAAGTGGGCAT+TGG | - | chr6_3:5997303-5997322 | None:intergenic | 35.0% | |
| AAGACAAAAGAAATCCCAAC+TGG | + | chr6_3:5997331-5997350 | Msa0935440:intron | 35.0% | |
| ! | TGGAAGCAATCAAGAAGTAT+TGG | + | chr6_3:5997542-5997561 | Msa0935440:CDS | 35.0% |
| !! | AAGAAGTATTGGACAAAGTG+AGG | + | chr6_3:5997553-5997572 | Msa0935440:CDS | 35.0% |
| AAAGTGAGGACTTTCAAAGA+TGG | + | chr6_3:5997567-5997586 | Msa0935440:CDS | 35.0% | |
| AGGTGACATTCGTAATAGTT+GGG | + | chr6_3:5997650-5997669 | Msa0935440:CDS | 35.0% | |
| ! | TGCTGTTTGTGATTCTCTTA+AGG | + | chr6_3:5997716-5997735 | Msa0935440:CDS | 35.0% |
| ACTCTATTAGAAGGAATACC+CGG | + | chr6_3:5997879-5997898 | Msa0935440:intron | 35.0% | |
| CAAAGATTCACACCATAGAT+TGG | + | chr6_3:5997959-5997978 | Msa0935440:intron | 35.0% | |
| CTTAAAACTGACACTTTGCT+TGG | + | chr6_3:5997994-5998013 | Msa0935440:intron | 35.0% | |
| ! | TCCATATTGAGTGGATTTGT+AGG | + | chr6_3:5998317-5998336 | Msa0935440:CDS | 35.0% |
| ATGAAGAGAGCAGAAAATCA+TGG | + | chr6_3:5998341-5998360 | Msa0935440:CDS | 35.0% | |
| TGTTCCATACTCTTTAACTG+AGG | + | chr6_3:5998364-5998383 | Msa0935440:CDS | 35.0% | |
| CCATACTCTTTGATTAATGG+TGG | - | chr6_3:5998479-5998498 | None:intergenic | 35.0% | |
| CCACCATTAATCAAAGAGTA+TGG | + | chr6_3:5998476-5998495 | Msa0935440:intron | 35.0% | |
| ! | TTAAAGTATTTAGGACCGGA+GGG | + | chr6_3:5998636-5998655 | Msa0935440:intron | 35.0% |
| TTGAACTCCTATCTCTATCA+AGG | - | chr6_3:5998758-5998777 | None:intergenic | 35.0% | |
| TGGATAGTTCCAAAGTTCTA+GGG | - | chr6_3:5998818-5998837 | None:intergenic | 35.0% | |
| ATGGATAGTTCCAAAGTTCT+AGG | - | chr6_3:5998819-5998838 | None:intergenic | 35.0% | |
| !! | AACTTTGGAACTATCCATCA+TGG | + | chr6_3:5998821-5998840 | Msa0935440:intron | 35.0% |
| CATCTTCATTATGTGGTACT+AGG | - | chr6_3:5998855-5998874 | None:intergenic | 35.0% | |
| CTAGTACCACATAATGAAGA+TGG | + | chr6_3:5998853-5998872 | Msa0935440:intron | 35.0% | |
| !!! | ATTTTTAGGGTCCTGTTAAC+CGG | + | chr6_3:5998941-5998960 | Msa0935440:intron | 35.0% |
| CGGGTTAAGAAATCCAAAAA+AGG | + | chr6_3:5998977-5998996 | Msa0935440:intron | 35.0% | |
| AGATATAACCAATTCAGGAG+AGG | + | chr6_3:5999265-5999284 | Msa0935440:CDS | 35.0% | |
| ATGGCAGAGAAGAAGATAAA+GGG | + | chr6_3:5999406-5999425 | Msa0935440:CDS | 35.0% | |
| !!! | TTTTATAGGGACTAGTTTGG+AGG | - | chr6_3:5999681-5999700 | None:intergenic | 35.0% |
| ! | AATGTTTAGGGTTAGGGTTT+AGG | + | chr6_3:5999806-5999825 | Msa0935440:intron | 35.0% |
| TTTCACAAGCAACTACAATG+AGG | + | chr6_3:5999894-5999913 | Msa0935440:CDS | 35.0% | |
| ACACTGAAAAGGGTTTGAAA+TGG | + | chr6_3:5999923-5999942 | Msa0935440:CDS | 35.0% | |
| ! | CACTGAAAAGGGTTTGAAAT+GGG | + | chr6_3:5999924-5999943 | Msa0935440:CDS | 35.0% |
| GAACACAACTGAAACCTTAA+AGG | + | chr6_3:5999948-5999967 | Msa0935440:CDS | 35.0% | |
| ACCCAAAAATGACACACAAA+TGG | + | chr6_3:5999989-6000008 | Msa0935440:CDS | 35.0% | |
| TTCAAGTGCTTTCTCTGTTT+GGG | + | chr6_3:6000020-6000039 | Msa0935440:CDS | 35.0% | |
| CACGCAAGTAAATTGGAATA+GGG | - | chr6_3:6000068-6000087 | None:intergenic | 35.0% | |
| ACACGCAAGTAAATTGGAAT+AGG | - | chr6_3:6000069-6000088 | None:intergenic | 35.0% | |
| GGAAATCTTTATGGATGGCA+TGG | - | chr6_3:5994106-5994125 | None:intergenic | 40.0% | |
| CTGCTGCATGGAAATCTTTA+TGG | - | chr6_3:5994115-5994134 | None:intergenic | 40.0% | |
| TAAAGATTTCCATGCAGCAG+TGG | + | chr6_3:5994115-5994134 | Msa0935440:CDS | 40.0% | |
| TGTACACTCCATTGACAAGT+TGG | + | chr6_3:5994606-5994625 | Msa0935440:CDS | 40.0% | |
| GTACACTCCATTGACAAGTT+GGG | + | chr6_3:5994607-5994626 | Msa0935440:CDS | 40.0% | |
| CCATATTCCCAACTTGTCAA+TGG | - | chr6_3:5994617-5994636 | None:intergenic | 40.0% | |
| ! | CCATTGACAAGTTGGGAATA+TGG | + | chr6_3:5994614-5994633 | Msa0935440:CDS | 40.0% |
| ! | ACCGTATGCCTGTTTTCTTA+GGG | + | chr6_3:5994638-5994657 | Msa0935440:CDS | 40.0% |
| GGCTAATATACTTGGCCATT+AGG | + | chr6_3:5994659-5994678 | Msa0935440:CDS | 40.0% | |
| TTGGTGAAGATGTCTCCTAA+TGG | - | chr6_3:5994677-5994696 | None:intergenic | 40.0% | |
| AATGTTGGAACAACACCTGT+AGG | + | chr6_3:5994712-5994731 | Msa0935440:CDS | 40.0% | |
| ATGTTGGAACAACACCTGTA+GGG | + | chr6_3:5994713-5994732 | Msa0935440:CDS | 40.0% | |
| TTTCCATACAGAACTGCTGA+TGG | + | chr6_3:5994757-5994776 | Msa0935440:CDS | 40.0% | |
| AATGAAAATGCTGGAAGCCA+AGG | + | chr6_3:5994799-5994818 | Msa0935440:CDS | 40.0% | |
| TTCTGCCAAAGAAAGATCCT+TGG | - | chr6_3:5994819-5994838 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTGATCCACA+GGG | - | chr6_3:5994849-5994868 | None:intergenic | 40.0% |
| ! | ACCTTTTTCTTCTGATCCAC+AGG | - | chr6_3:5994850-5994869 | None:intergenic | 40.0% |
| !!! | TTGCTTACTTTTTGGGACGA+AGG | + | chr6_3:5995181-5995200 | Msa0935440:intron | 40.0% |
| TCATCTCCAAAAAGGTCTAG+CGG | - | chr6_3:5995387-5995406 | None:intergenic | 40.0% | |
| !! | TCTCCTCTCTAGAAGTTTTG+TGG | - | chr6_3:5995797-5995816 | None:intergenic | 40.0% |
| AGGAGAACATATAAGGACAC+AGG | + | chr6_3:5995811-5995830 | Msa0935440:CDS | 40.0% | |
| GGAGAACATATAAGGACACA+GGG | + | chr6_3:5995812-5995831 | Msa0935440:CDS | 40.0% | |
| ! | ACGTTAGGTGGAGACTTTTT+GGG | - | chr6_3:5996425-5996444 | None:intergenic | 40.0% |
| ! | AACGTTAGGTGGAGACTTTT+TGG | - | chr6_3:5996426-5996445 | None:intergenic | 40.0% |
| !! | CATTGGTTTGCAACTTCTCT+TGG | - | chr6_3:5997286-5997305 | None:intergenic | 40.0% |
| ! | AATCCCAACTGGTTTCTATG+AGG | + | chr6_3:5997342-5997361 | Msa0935440:intron | 40.0% |
| ATTCTTACCACCAAGGTGTA+CGG | - | chr6_3:5997390-5997409 | None:intergenic | 40.0% | |
| ! | AGGGATGGAAGTGTGATATA+TGG | + | chr6_3:5997522-5997541 | Msa0935440:intron | 40.0% |
| GAAGATGGAACAGCAATTTC+AGG | + | chr6_3:5997630-5997649 | Msa0935440:CDS | 40.0% | |
| CAGGTGACATTCGTAATAGT+TGG | + | chr6_3:5997649-5997668 | Msa0935440:CDS | 40.0% | |
| AGATCTTCATCTTCCAAGTC+CGG | - | chr6_3:5997901-5997920 | None:intergenic | 40.0% | |
| TCTTTATCGCTATGCTAGAC+TGG | + | chr6_3:5997918-5997937 | Msa0935440:CDS | 40.0% | |
| AAAACTGACACTTTGCTTGG+AGG | + | chr6_3:5997997-5998016 | Msa0935440:intron | 40.0% | |
| TCGCATGTGTTCTTACCAAT+TGG | - | chr6_3:5998031-5998050 | None:intergenic | 40.0% | |
| TCCACTCAATATGGAGTTTC+CGG | - | chr6_3:5998312-5998331 | None:intergenic | 40.0% | |
| GCCTACAAATCCACTCAATA+TGG | - | chr6_3:5998321-5998340 | None:intergenic | 40.0% | |
| TCTCTCAAATGCAGGAAATC+AGG | - | chr6_3:5998425-5998444 | None:intergenic | 40.0% | |
| ! | CTTAAAGTATTTAGGACCGG+AGG | + | chr6_3:5998635-5998654 | Msa0935440:intron | 40.0% |
| AGTCCGATCAAATCGTTCAT+AGG | - | chr6_3:5998721-5998740 | None:intergenic | 40.0% | |
| AACGATTTGATCGGACTACA+AGG | + | chr6_3:5998724-5998743 | Msa0935440:intron | 40.0% | |
| GAGAAGACCTTGATAGAGAT+AGG | + | chr6_3:5998748-5998767 | Msa0935440:intron | 40.0% | |
| TCTGTGCCATCTTCATTATG+TGG | - | chr6_3:5998862-5998881 | None:intergenic | 40.0% | |
| CACAGAAAGATCTAACCATG+TGG | + | chr6_3:5998876-5998895 | Msa0935440:intron | 40.0% | |
| AAGATCTAACCATGTGGACT+TGG | + | chr6_3:5998882-5998901 | Msa0935440:intron | 40.0% | |
| GGACCCTAAAAATAAAGGTG+TGG | - | chr6_3:5998934-5998953 | None:intergenic | 40.0% | |
| GTTTATAGGGATAGAGAGAG+AGG | + | chr6_3:5999235-5999254 | Msa0935440:intron | 40.0% | |
| TGAATAGTCCTCTCCTGAAT+TGG | - | chr6_3:5999276-5999295 | None:intergenic | 40.0% | |
| ! | GATCTATGGTGATGATGTTG+AGG | + | chr6_3:5999360-5999379 | Msa0935440:CDS | 40.0% |
| CATGGCAGAGAAGAAGATAA+AGG | + | chr6_3:5999405-5999424 | Msa0935440:CDS | 40.0% | |
| TTTACCTAGATGCCATGAGA+AGG | - | chr6_3:5999465-5999484 | None:intergenic | 40.0% | |
| TGAGGAGACATACACTGAAA+AGG | + | chr6_3:5999912-5999931 | Msa0935440:CDS | 40.0% | |
| GAGGAGACATACACTGAAAA+GGG | + | chr6_3:5999913-5999932 | Msa0935440:CDS | 40.0% | |
| GCGATCAATCACATCCTTTA+AGG | - | chr6_3:5999965-5999984 | None:intergenic | 40.0% | |
| !!! | TGTGTGTCATTTTTGGGTAG+TGG | - | chr6_3:5999987-6000006 | None:intergenic | 40.0% |
| CTTCAAGTGCTTTCTCTGTT+TGG | + | chr6_3:6000019-6000038 | Msa0935440:CDS | 40.0% | |
| ATAGGGTTGTGTTTGTTTGG+TGG | - | chr6_3:6000051-6000070 | None:intergenic | 40.0% | |
| GGAATAGGGTTGTGTTTGTT+TGG | - | chr6_3:6000054-6000073 | None:intergenic | 40.0% | |
| CTAGGAACACGCAAGTAAAT+TGG | - | chr6_3:6000075-6000094 | None:intergenic | 40.0% | |
| ! | CACCGTATGCCTGTTTTCTT+AGG | + | chr6_3:5994637-5994656 | Msa0935440:CDS | 45.0% |
| GCCCTAAGAAAACAGGCATA+CGG | - | chr6_3:5994642-5994661 | None:intergenic | 45.0% | |
| TGTTGGAACAACACCTGTAG+GGG | + | chr6_3:5994714-5994733 | Msa0935440:CDS | 45.0% | |
| CTTCCATCAGCAGTTCTGTA+TGG | - | chr6_3:5994763-5994782 | None:intergenic | 45.0% | |
| GGAAGCCAAGGATCTTTCTT+TGG | + | chr6_3:5994811-5994830 | Msa0935440:CDS | 45.0% | |
| CCCTGTGGATCAGAAGAAAA+AGG | + | chr6_3:5994846-5994865 | Msa0935440:intron | 45.0% | |
| ! | ATTGCACCGCTAGACCTTTT+TGG | + | chr6_3:5995378-5995397 | Msa0935440:intron | 45.0% |
| AGCTGCCGAAACCGAATAAA+AGG | + | chr6_3:5995637-5995656 | Msa0935440:intron | 45.0% | |
| GTTGTTGAAACCAGACCCAA+TGG | + | chr6_3:5995765-5995784 | Msa0935440:intron | 45.0% | |
| ! | TGGCCACAAAACTTCTAGAG+AGG | + | chr6_3:5995791-5995810 | Msa0935440:CDS | 45.0% |
| TCATATGGAAGACACTCAGC+AGG | + | chr6_3:5995894-5995913 | Msa0935440:CDS | 45.0% | |
| ! | CGTTAGGTGGAGACTTTTTG+GGG | - | chr6_3:5996424-5996443 | None:intergenic | 45.0% |
| GGACCTCATAGAAACCAGTT+GGG | - | chr6_3:5997348-5997367 | None:intergenic | 45.0% | |
| TGGACCTCATAGAAACCAGT+TGG | - | chr6_3:5997349-5997368 | None:intergenic | 45.0% | |
| TGTACGGATGTTTGCATGTC+CGG | - | chr6_3:5997374-5997393 | None:intergenic | 45.0% | |
| ATGCAAACATCCGTACACCT+TGG | + | chr6_3:5997377-5997396 | Msa0935440:intron | 45.0% | |
| GACATTCGTAATAGTTGGGC+TGG | + | chr6_3:5997654-5997673 | Msa0935440:CDS | 45.0% | |
| TTAGAAGGAATACCCGGACT+TGG | + | chr6_3:5997885-5997904 | Msa0935440:intron | 45.0% | |
| GATCTTCATCTTCCAAGTCC+GGG | - | chr6_3:5997900-5997919 | None:intergenic | 45.0% | |
| TCACACCATAGATTGGACTG+TGG | + | chr6_3:5997966-5997985 | Msa0935440:intron | 45.0% | |
| AAGCTCCACAGTCCAATCTA+TGG | - | chr6_3:5997974-5997993 | None:intergenic | 45.0% | |
| AAGGACACATTTGGGCATTC+CGG | + | chr6_3:5998290-5998309 | Msa0935440:CDS | 45.0% | |
| TCCGGAAACTCCATATTGAG+TGG | + | chr6_3:5998308-5998327 | Msa0935440:CDS | 45.0% | |
| TCAAATGCAGGAAATCAGGC+AGG | - | chr6_3:5998421-5998440 | None:intergenic | 45.0% | |
| CAGATGTGTCTCTCAAATGC+AGG | - | chr6_3:5998433-5998452 | None:intergenic | 45.0% | |
| CAGAAAGAAGATACTCCCTC+CGG | - | chr6_3:5998654-5998673 | None:intergenic | 45.0% | |
| TGATGTGCTTGTAGGTCTCA+TGG | + | chr6_3:5999387-5999406 | Msa0935440:CDS | 45.0% | |
| TCTTCCTTCTCATGGCATCT+AGG | + | chr6_3:5999458-5999477 | Msa0935440:intron | 45.0% | |
| TGTACTTTACAGGAGGCTAG+AGG | + | chr6_3:5999861-5999880 | Msa0935440:intron | 45.0% | |
| GTACTTTACAGGAGGCTAGA+GGG | + | chr6_3:5999862-5999881 | Msa0935440:intron | 45.0% | |
| !! | ACATTTTGGCCACTGCTGCA+TGG | - | chr6_3:5994127-5994146 | None:intergenic | 50.0% |
| GAACAACACCTGTAGGGGTT+AGG | + | chr6_3:5994719-5994738 | Msa0935440:CDS | 50.0% | |
| TGGCAGAAACATTCTCCCTG+TGG | + | chr6_3:5994831-5994850 | Msa0935440:intron | 50.0% | |
| TGATGGCTTAAGTGAGGGGA+GGG | - | chr6_3:5995016-5995035 | None:intergenic | 50.0% | |
| ! | TTGATGGCTTAAGTGAGGGG+AGG | - | chr6_3:5995017-5995036 | None:intergenic | 50.0% |
| GTTGAAACCAGACCCAATGG+TGG | + | chr6_3:5995768-5995787 | Msa0935440:CDS | 50.0% | |
| ! | GTTTTGTGGCCACCACCATT+GGG | - | chr6_3:5995783-5995802 | None:intergenic | 50.0% |
| !! | AGTTTTGTGGCCACCACCAT+TGG | - | chr6_3:5995784-5995803 | None:intergenic | 50.0% |
| GGTTTCTATGAGGTCCAGAC+CGG | + | chr6_3:5997352-5997371 | Msa0935440:intron | 50.0% | |
| CAAACATCCGTACACCTTGG+TGG | + | chr6_3:5997380-5997399 | Msa0935440:intron | 50.0% | |
| !! | TGGAGATTTGTTAGGCCCAG+GGG | - | chr6_3:5998459-5998478 | None:intergenic | 50.0% |
| !! | GTGGAGATTTGTTAGGCCCA+GGG | - | chr6_3:5998460-5998479 | None:intergenic | 50.0% |
| TCAATGGGTCACCAAGCTTG+TGG | + | chr6_3:5998790-5998809 | Msa0935440:intron | 50.0% | |
| CAATGGGTCACCAAGCTTGT+GGG | + | chr6_3:5998791-5998810 | Msa0935440:intron | 50.0% | |
| AATGGGTCACCAAGCTTGTG+GGG | + | chr6_3:5998792-5998811 | Msa0935440:intron | 50.0% | |
| ACTAGGTCTCTGAGCCATGA+TGG | - | chr6_3:5998838-5998857 | None:intergenic | 50.0% | |
| AAATGTTAACCAGTGCCCCC+GGG | - | chr6_3:5999100-5999119 | None:intergenic | 50.0% | |
| GAAATGTTAACCAGTGCCCC+CGG | - | chr6_3:5999101-5999120 | None:intergenic | 50.0% | |
| GAGGAGCTTGATGTGCTTGT+AGG | + | chr6_3:5999379-5999398 | Msa0935440:CDS | 50.0% | |
| GGGTTTGACCTAACCCCTAC+AGG | - | chr6_3:5994730-5994749 | None:intergenic | 55.0% | |
| GAAACCAGACCCAATGGTGG+TGG | + | chr6_3:5995771-5995790 | Msa0935440:CDS | 55.0% | |
| GGATGTTTGCATGTCCGGTC+TGG | - | chr6_3:5997369-5997388 | None:intergenic | 55.0% | |
| TGCAGGAAATCAGGCAGGAG+TGG | - | chr6_3:5998416-5998435 | None:intergenic | 55.0% | |
| !! | AGATTTGTTAGGCCCAGGGG+AGG | - | chr6_3:5998456-5998475 | None:intergenic | 55.0% |
| !! | GGTGGAGATTTGTTAGGCCC+AGG | - | chr6_3:5998461-5998480 | None:intergenic | 55.0% |
| CTTGTGGGGCCCTAGAACTT+TGG | + | chr6_3:5998806-5998825 | Msa0935440:intron | 55.0% | |
| CAAGAGCAGCCAAGTCCACA+TGG | - | chr6_3:5998894-5998913 | None:intergenic | 55.0% | |
| ATTTCTTAACCCGTGCCCCG+GGG | - | chr6_3:5998970-5998989 | None:intergenic | 55.0% | |
| GATTTCTTAACCCGTGCCCC+GGG | - | chr6_3:5998971-5998990 | None:intergenic | 55.0% | |
| GGATTTCTTAACCCGTGCCC+CGG | - | chr6_3:5998972-5998991 | None:intergenic | 55.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | + | chr6_3:5999079-5999098 | Msa0935440:intron | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | - | chr6_3:5999099-5999118 | None:intergenic | 55.0% | |
| ! | TTGGAGGCATGCGCGCCAAT+TGG | + | chr6_3:5998013-5998032 | Msa0935440:intron | 60.0% |
| AGAGACACATCTGCCTCCCC+TGG | + | chr6_3:5998440-5998459 | Msa0935440:CDS | 60.0% | |
| GAGACACATCTGCCTCCCCT+GGG | + | chr6_3:5998441-5998460 | Msa0935440:CDS | 60.0% | |
| !! | GTTCTAGGGCCCCACAAGCT+TGG | - | chr6_3:5998804-5998823 | None:intergenic | 60.0% |
| TTTCTTAACCCGTGCCCCGG+GGG | - | chr6_3:5998969-5998988 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | chr6_3:5999080-5999099 | Msa0935440:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | + | chr6_3:5999081-5999100 | Msa0935440:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | + | chr6_3:5999082-5999101 | Msa0935440:intron | 60.0% | |
| GTGGCCACCACCATTGGGTC+TGG | - | chr6_3:5995778-5995797 | None:intergenic | 65.0% | |
| GTCCTGTTAACCGGTGCCCC+CGG | + | chr6_3:5998950-5998969 | Msa0935440:intron | 65.0% | |
| TCCTGTTAACCGGTGCCCCC+GGG | + | chr6_3:5998951-5998970 | Msa0935440:intron | 65.0% | |
| CCTGTTAACCGGTGCCCCCG+GGG | + | chr6_3:5998952-5998971 | Msa0935440:intron | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr6_3:5999087-5999106 | None:intergenic | 70.0% |
| !! | CCCCGGGGGCACCGGTTAAC+AGG | - | chr6_3:5998955-5998974 | None:intergenic | 75.0% |
| TAACCGGTGCCCCCGGGGCA+CGG | + | chr6_3:5998957-5998976 | Msa0935440:intron | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | + | chr6_3:5999088-5999107 | Msa0935440:intron | 75.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | - | chr6_3:5999093-5999112 | None:intergenic | 75.0% | |
| ! | AACCGGTGCCCCCGGGGCAC+GGG | + | chr6_3:5998958-5998977 | Msa0935440:intron | 80.0% |
| !! | AACCCGTGCCCCGGGGGCAC+CGG | - | chr6_3:5998963-5998982 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 5994050 | 6000098 | 5994050 | ID=Msa0935440;Name=Msa0935440 |
| chr6_3 | mRNA | 5994050 | 6000098 | 5994050 | ID=Msa0935440-mRNA-1;Parent=Msa0935440;Name=Msa0935440-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.25|0.33|9|0|482 |
| chr6_3 | exon | 5994050 | 5994172 | 5994050 | ID=Msa0935440-mRNA-1:exon:1848;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5994604 | 5994849 | 5994604 | ID=Msa0935440-mRNA-1:exon:1849;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5995766 | 5995915 | 5995766 | ID=Msa0935440-mRNA-1:exon:1850;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5997268 | 5997323 | 5997268 | ID=Msa0935440-mRNA-1:exon:1851;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5997524 | 5997737 | 5997524 | ID=Msa0935440-mRNA-1:exon:1852;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5997892 | 5997939 | 5997892 | ID=Msa0935440-mRNA-1:exon:1853;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5998284 | 5998492 | 5998284 | ID=Msa0935440-mRNA-1:exon:1854;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5999243 | 5999427 | 5999243 | ID=Msa0935440-mRNA-1:exon:1855;Parent=Msa0935440-mRNA-1 |
| chr6_3 | exon | 5999881 | 6000098 | 5999881 | ID=Msa0935440-mRNA-1:exon:1856;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5994050 | 5994172 | 5994050 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5994604 | 5994849 | 5994604 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5995766 | 5995915 | 5995766 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5997268 | 5997323 | 5997268 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5997524 | 5997737 | 5997524 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5997892 | 5997939 | 5997892 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5998284 | 5998492 | 5998284 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5999243 | 5999427 | 5999243 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| chr6_3 | CDS | 5999881 | 6000098 | 5999881 | ID=Msa0935440-mRNA-1:cds;Parent=Msa0935440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
