AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998700 MtrunA17_Chr6g0484671 45.455 187 49 4 162 316 145 310 7.64e-20 88.2
Msa0998700 MtrunA17_Chr6g0484671 41.579 190 54 6 112 266 144 311 7.20e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 127 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACTGAACAAAATATTTA+TGG 0.176291 6_4:-79922316 Msa0998700:CDS
CATGGAGTTGACACAGGTTT+TGG 0.197518 6_4:-79923065 Msa0998700:CDS
AGGAGCTGTGGACAAGATTA+AGG 0.291835 6_4:-79922350 Msa0998700:CDS
AAAATTCCTGGCACTGGAAC+TGG 0.317217 6_4:-79922655 Msa0998700:CDS
ACTGGTAGGGTTGATGAATA+TGG 0.317246 6_4:-79923185 Msa0998700:CDS
CCTGGCACTGGAACTGGAAC+TGG 0.334665 6_4:-79922649 Msa0998700:CDS
AGTCATCCCACCACCACTAA+TGG 0.343093 6_4:+79923121 None:intergenic
CCTGTTCCAGTTCCAGTTCC+AGG 0.353061 6_4:+79922502 None:intergenic
TCTAATGCAGGTGGTGGTTA+TGG 0.353755 6_4:-79922799 Msa0998700:intron
AGCTCCATAGCCGGTTGTTC+CGG 0.355691 6_4:+79922732 None:intergenic
AAGATTCCTGGAACTGGAAC+TGG 0.359093 6_4:-79922508 Msa0998700:CDS
GGTGCTACTGGAACTGGAAC+TGG 0.370972 6_4:-79922460 Msa0998700:CDS
GGAGCTACAGGTGGCGGAAC+TGG 0.372221 6_4:-79922715 Msa0998700:CDS
ACAGGTACTGGTACAGGATA+TGG 0.372996 6_4:-79923035 Msa0998700:CDS
GGTTATGGTGCTACTGGAAC+TGG 0.375981 6_4:-79922466 Msa0998700:CDS
ACAGGAACTGGAACTGGAAC+TGG 0.384215 6_4:-79922286 Msa0998700:CDS
AAGATCAAGGAGAAGATTCC+TGG 0.387597 6_4:-79922520 Msa0998700:CDS
CCTGGAACTGGAACTGGAAC+AGG 0.387624 6_4:-79922502 Msa0998700:CDS
GTACTGAACAAAATATTTAT+GGG 0.388760 6_4:-79922315 Msa0998700:CDS
GGAAGCACTGGACAAGAGTA+TGG 0.391237 6_4:-79922211 Msa0998700:CDS
AATATTTATGGGACAGGAAC+AGG 0.392831 6_4:-79922304 Msa0998700:CDS
ACTGGAACTGGAACTGGAAC+TGG 0.407435 6_4:-79922643 Msa0998700:CDS
ACTGGAACTGGAACTGGAAC+AGG 0.408098 6_4:-79922637 Msa0998700:CDS
AAGATCAAGGAGAAAATTCC+TGG 0.413554 6_4:-79922667 Msa0998700:CDS
CAAGGCCAAGTTGATCAATA+TGG 0.416063 6_4:-79923149 Msa0998700:CDS
ACTGGACATGGGACAGGAAC+AGG 0.419165 6_4:-79922268 Msa0998700:CDS
CATATTGATCAACTTGGCCT+TGG 0.419277 6_4:+79923150 None:intergenic
TATGGTACAGGGACAGGAAC+CGG 0.420603 6_4:-79922751 Msa0998700:CDS
AAAATTAAGGAGAAGATTCC+TGG 0.424067 6_4:-79922127 Msa0998700:CDS
ACTGGAACTGGAACTGGAAC+AGG 0.426009 6_4:-79922454 Msa0998700:CDS
GGTGGGATGACTGGTGCTAC+TGG 0.426647 6_4:-79923110 Msa0998700:CDS
TATGGGACAGGAACAGGAAC+TGG 0.427579 6_4:-79922298 Msa0998700:CDS
GGTAATGATATTGATGGAAC+CGG 0.427999 6_4:-79922775 Msa0998700:CDS
AAGGAGAAGATTCCTGGAAC+TGG 0.429498 6_4:-79922514 Msa0998700:CDS
CAACTCCATGATGTTGTTGA+TGG 0.429936 6_4:+79923078 None:intergenic
ATCAACTTGGCCTTGGCTCA+AGG 0.433377 6_4:+79923157 None:intergenic
GGCAATCCCATTAGTGGTGG+TGG 0.433710 6_4:-79923128 Msa0998700:CDS
ACAGGAACAGGAACTGGAAC+TGG 0.440479 6_4:-79922292 Msa0998700:CDS
GTCATCCCACCACCACTAAT+GGG 0.445577 6_4:+79923122 None:intergenic
CATGGGACAGGAACAGGAAC+TGG 0.449758 6_4:-79922262 Msa0998700:CDS
GGAACAGGTCGTGGAACAAC+TGG 0.455989 6_4:-79922622 Msa0998700:CDS
TCAACTTGGCCTTGGCTCAA+GGG 0.457612 6_4:+79923158 None:intergenic
CAACTTGGCCTTGGCTCAAG+GGG 0.457999 6_4:+79923159 None:intergenic
GATATTGATGGAACCGGGTA+TGG 0.458419 6_4:-79922769 Msa0998700:CDS
GGAACAGGTCATGGAACAAC+TGG 0.460620 6_4:-79922439 Msa0998700:CDS
GGAACAGGTCATGGAACAAC+TGG 0.460620 6_4:-79922487 Msa0998700:CDS
GGGACAGGAACCGGAACAAC+CGG 0.462844 6_4:-79922742 Msa0998700:CDS
ACAACTGGTTATGGTGATAC+TGG 0.463302 6_4:-79922607 Msa0998700:CDS
ATTAGTGGTGGTGGGATGAC+TGG 0.468498 6_4:-79923119 Msa0998700:CDS
AAGATTAAGGAGAAGATTCC+TGG 0.468840 6_4:-79922337 Msa0998700:CDS
AAGGAGAAGATTCCTGGTAC+TGG 0.469022 6_4:-79922121 Msa0998700:CDS
TATGGAACACACGCTGGTAG+TGG 0.469062 6_4:-79923017 Msa0998700:CDS
TTTGGGAGCAACACAGGTAC+TGG 0.472867 6_4:-79923047 Msa0998700:CDS
GGTCATGGAACAACTGGTTA+TGG 0.473670 6_4:-79922433 Msa0998700:CDS
GGTCATGGAACAACTGGTTA+TGG 0.473670 6_4:-79922481 Msa0998700:CDS
ACTGGAACTGGAACTGGACA+TGG 0.477655 6_4:-79922280 Msa0998700:CDS
GATGGAACCGGGTATGGTAC+AGG 0.478285 6_4:-79922763 Msa0998700:CDS
ACCGGGTATGGTACAGGGAC+AGG 0.478921 6_4:-79922757 Msa0998700:CDS
CCAGTTCCAGTTCCAGTGCC+AGG 0.482887 6_4:+79922649 None:intergenic
CAACAAGGTGGTGATCAAAC+TGG 0.483657 6_4:-79923203 Msa0998700:CDS
ATGGAACACACGCTGGTAGT+GGG 0.484220 6_4:-79923016 Msa0998700:CDS
CATGGACATGGAACAACTAC+TGG 0.485597 6_4:-79922238 Msa0998700:CDS
ACTGGAACTGGAACAGGTCG+TGG 0.491588 6_4:-79922631 Msa0998700:CDS
ACAACTGGTTATGGTGCTAC+TGG 0.493358 6_4:-79922472 Msa0998700:CDS
GATGTTGGTCATGGAACAAC+TGG 0.494534 6_4:-79922403 Msa0998700:CDS
AAGGAGAAAATTCCTGGCAC+TGG 0.503829 6_4:-79922661 Msa0998700:CDS
GGTCGTGGAACAACTGGTTA+TGG 0.505394 6_4:-79922616 Msa0998700:CDS
CCAGTACATGATCCAGTACC+AGG 0.505527 6_4:+79922109 None:intergenic
ATGACTGGTGCTACTGGTCA+TGG 0.507846 6_4:-79923104 Msa0998700:CDS
GGAACCGGAACAACCGGCTA+TGG 0.510275 6_4:-79922736 Msa0998700:CDS
CATGGAACAACTACTGGCTA+TGG 0.511666 6_4:-79922232 Msa0998700:CDS
AGGAGTTGTGGACAAGATCA+AGG 0.513775 6_4:-79922533 Msa0998700:CDS
CAATATGGCAATCCCATTAG+TGG 0.515585 6_4:-79923134 Msa0998700:CDS
TATGGAGGTAATGATATTGA+TGG 0.516426 6_4:-79922781 Msa0998700:CDS
CCTGGTACTGGATCATGTAC+TGG 0.516603 6_4:-79922109 Msa0998700:CDS
ACATGATAACAGAGGGGTAG+TGG 0.519568 6_4:-79922692 Msa0998700:CDS
GGTGTTGGTCAAGGAACAAC+TGG 0.521239 6_4:-79922586 Msa0998700:CDS
ACTGGAACTGGAACAGGTCA+TGG 0.523949 6_4:-79922448 Msa0998700:CDS
ACTGGAACTGGAACAGGTCA+TGG 0.523949 6_4:-79922496 Msa0998700:CDS
AGGGGTAGTGGACAAGATCA+AGG 0.527134 6_4:-79922680 Msa0998700:CDS
ACTGGAACTGGACATGGGAC+AGG 0.527658 6_4:-79922274 Msa0998700:CDS
CAACAACATGGAGAAAATAG+AGG 0.532385 6_4:-79922553 Msa0998700:CDS
TATGGAAAAGAGGGTCATCA+TGG 0.533254 6_4:-79922193 Msa0998700:CDS
ACTACTGGCTATGGAAGCAC+TGG 0.536598 6_4:-79922223 Msa0998700:CDS
AGCAACACAGGTACTGGTAC+AGG 0.538724 6_4:-79923041 Msa0998700:CDS
GAACAAAATATTTATGGGAC+AGG 0.539035 6_4:-79922310 Msa0998700:CDS
TGGAACACACGCTGGTAGTG+GGG 0.539678 6_4:-79923015 Msa0998700:CDS
GATTGCCATATTGATCAACT+TGG 0.539982 6_4:+79923144 None:intergenic
GCCACCTGTAGCTCCATAGC+CGG 0.542385 6_4:+79922723 None:intergenic
GGCTATGGAGCTACAGGTGG+CGG 0.544468 6_4:-79922721 Msa0998700:CDS
TGGACAAGAGTATGGAAAAG+AGG 0.546793 6_4:-79922203 Msa0998700:CDS
GGAACACACGCTGGTAGTGG+GGG 0.547642 6_4:-79923014 Msa0998700:CDS
CAACAACATGGAGATAATAG+AGG 0.547854 6_4:-79922370 Msa0998700:CDS
TGGAGAAAATAGAGGAGTTG+TGG 0.548338 6_4:-79922545 Msa0998700:CDS
ACAACCGGCTATGGAGCTAC+AGG 0.564829 6_4:-79922727 Msa0998700:CDS
GGTTATGGTGCTACTGATGT+TGG 0.578797 6_4:-79922418 Msa0998700:CDS
ACAGGAACAGGAACTGGACA+TGG 0.585426 6_4:-79922256 Msa0998700:CDS
AACACACGCTGGTAGTGGGG+GGG 0.589672 6_4:-79923012 Msa0998700:CDS
ACAGGAACTGGACATGGACA+TGG 0.591800 6_4:-79922250 Msa0998700:CDS
GGACACCATCAACAACATCA+TGG 0.598586 6_4:-79923083 Msa0998700:CDS
TATGGAAACCCCTTGAGCCA+AGG 0.599812 6_4:-79923167 Msa0998700:CDS
AAGGTGGTGATCAAACTGGT+AGG 0.600281 6_4:-79923199 Msa0998700:CDS
GGACAAGAGTATGGAAAAGA+GGG 0.606312 6_4:-79922202 Msa0998700:CDS
TGGAGATAATAGAGGAGCTG+TGG 0.607582 6_4:-79922362 Msa0998700:CDS
CTGGAACTGGAACTGGACAT+GGG 0.610777 6_4:-79922279 Msa0998700:CDS
GGTGATACTGGTGTTGGTCA+AGG 0.612946 6_4:-79922595 Msa0998700:CDS
ATGGAACCGGGTATGGTACA+GGG 0.613026 6_4:-79922762 Msa0998700:CDS
GGTGCTACTGATGTTGGTCA+TGG 0.613547 6_4:-79922412 Msa0998700:CDS
CAACATCATGGAGTTGACAC+AGG 0.616222 6_4:-79923071 Msa0998700:CDS
AATGCAGGTGGTGGTTATGG+AGG 0.617504 6_4:-79922796 Msa0998700:intron
GGTCATGGAACAACTGGTGT+TGG 0.623411 6_4:-79922397 Msa0998700:CDS
GGTTATGGTGATACTGGTGT+TGG 0.623712 6_4:-79922601 Msa0998700:CDS
GAACTGGACATGATAACAGA+GGG 0.628252 6_4:-79922699 Msa0998700:CDS
AGGTGGTGATCAAACTGGTA+GGG 0.630608 6_4:-79923198 Msa0998700:CDS
GGTCAAGGAACAACTGGTGT+TGG 0.634078 6_4:-79922580 Msa0998700:CDS
GCAATCCCATTAGTGGTGGT+GGG 0.635724 6_4:-79923127 Msa0998700:CDS
ACTGGATCATGTACTGGACA+TGG 0.658437 6_4:-79922103 Msa0998700:CDS
TATGGCAATCCCATTAGTGG+TGG 0.666004 6_4:-79923131 Msa0998700:CDS
GTAATGATATTGATGGAACC+GGG 0.667858 6_4:-79922774 Msa0998700:CDS
GGACATGATGAGCAACACCT+TGG 0.668375 6_4:-79922172 Msa0998700:CDS
GGTGTTGGTCATCAACAACA+TGG 0.679464 6_4:-79922382 Msa0998700:CDS
GGTGTTGGTCATCAACAACA+TGG 0.679464 6_4:-79922565 Msa0998700:CDS
ACAGGATATGGAACACACGC+TGG 0.687164 6_4:-79923023 Msa0998700:CDS
GGAACTGGACATGATAACAG+AGG 0.719077 6_4:-79922700 Msa0998700:CDS
ACAATGTCTCAATATCAACA+AGG 0.721195 6_4:-79923218 Msa0998700:CDS
ATGTCTCAATATCAACAAGG+TGG 0.725256 6_4:-79923215 Msa0998700:CDS
AACTGGACATGATAACAGAG+GGG 0.772871 6_4:-79922698 Msa0998700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAATTCAAATGATTAT+CGG - chr6_4:79922535-79922554 Msa0998700:CDS 15.0%
!! TTTCAAATTCAAATGATTAT+CGG - chr6_4:79922535-79922554 Msa0998700:CDS 15.0%
!! GTACTGAACAAAATATTTAT+GGG - chr6_4:79923085-79923104 Msa0998700:CDS 20.0%
!! GTACTGAACAAAATATTTAT+GGG - chr6_4:79923085-79923104 Msa0998700:CDS 20.0%
!!! TTTTGTTTTCTTGGTTTGTA+AGG + chr6_4:79922124-79922143 None:intergenic 25.0%
!! CAATGTTTTATATCTAATGC+AGG - chr6_4:79922589-79922608 Msa0998700:CDS 25.0%
!! TAAATATTTTGTTCAGTACC+AGG + chr6_4:79923084-79923103 None:intergenic 25.0%
!! GGTACTGAACAAAATATTTA+TGG - chr6_4:79923084-79923103 Msa0998700:CDS 25.0%
! AGGGATTATGGAAAAAATTA+AGG - chr6_4:79923260-79923279 Msa0998700:five_prime_UTR 25.0%
!!! TTTTGTTTTCTTGGTTTGTA+AGG + chr6_4:79922124-79922143 None:intergenic 25.0%
!! CAATGTTTTATATCTAATGC+AGG - chr6_4:79922589-79922608 Msa0998700:CDS 25.0%
!! TAAATATTTTGTTCAGTACC+AGG + chr6_4:79923084-79923103 None:intergenic 25.0%
!! GGTACTGAACAAAATATTTA+TGG - chr6_4:79923084-79923103 Msa0998700:CDS 25.0%
! AGGGATTATGGAAAAAATTA+AGG - chr6_4:79923260-79923279 Msa0998700:five_prime_UTR 25.0%
!!! AACGTGAAGTTTTGTTTTCT+TGG + chr6_4:79922133-79922152 None:intergenic 30.0%
ACAATGTCTCAATATCAACA+AGG - chr6_4:79922182-79922201 Msa0998700:CDS 30.0%
TAGACTAATTAGTTACCTGT+GGG + chr6_4:79922416-79922435 None:intergenic 30.0%
TTAGACTAATTAGTTACCTG+TGG + chr6_4:79922417-79922436 None:intergenic 30.0%
! TGTTTTATATCTAATGCAGG+TGG - chr6_4:79922592-79922611 Msa0998700:CDS 30.0%
TATGGAGGTAATGATATTGA+TGG - chr6_4:79922619-79922638 Msa0998700:CDS 30.0%
GAACAAAATATTTATGGGAC+AGG - chr6_4:79923090-79923109 Msa0998700:CDS 30.0%
AAAATTAAGGAGAAGATTCC+TGG - chr6_4:79923273-79923292 Msa0998700:five_prime_UTR 30.0%
!!! AACGTGAAGTTTTGTTTTCT+TGG + chr6_4:79922133-79922152 None:intergenic 30.0%
ACAATGTCTCAATATCAACA+AGG - chr6_4:79922182-79922201 Msa0998700:CDS 30.0%
TAGACTAATTAGTTACCTGT+GGG + chr6_4:79922416-79922435 None:intergenic 30.0%
TTAGACTAATTAGTTACCTG+TGG + chr6_4:79922417-79922436 None:intergenic 30.0%
! TGTTTTATATCTAATGCAGG+TGG - chr6_4:79922592-79922611 Msa0998700:CDS 30.0%
TATGGAGGTAATGATATTGA+TGG - chr6_4:79922619-79922638 Msa0998700:CDS 30.0%
GAACAAAATATTTATGGGAC+AGG - chr6_4:79923090-79923109 Msa0998700:CDS 30.0%
AAAATTAAGGAGAAGATTCC+TGG - chr6_4:79923273-79923292 Msa0998700:five_prime_UTR 30.0%
ATGTCTCAATATCAACAAGG+TGG - chr6_4:79922185-79922204 Msa0998700:CDS 35.0%
GATTGCCATATTGATCAACT+TGG + chr6_4:79922259-79922278 None:intergenic 35.0%
TTTATATCTAATGCAGGTGG+TGG - chr6_4:79922595-79922614 Msa0998700:CDS 35.0%
GGTAATGATATTGATGGAAC+CGG - chr6_4:79922625-79922644 Msa0998700:CDS 35.0%
GTAATGATATTGATGGAACC+GGG - chr6_4:79922626-79922645 Msa0998700:CDS 35.0%
AAGATCAAGGAGAAAATTCC+TGG - chr6_4:79922733-79922752 Msa0998700:CDS 35.0%
CAACAACATGGAGAAAATAG+AGG - chr6_4:79922847-79922866 Msa0998700:intron 35.0%
CAACAACATGGAGATAATAG+AGG - chr6_4:79923030-79923049 Msa0998700:CDS 35.0%
AAGATTAAGGAGAAGATTCC+TGG - chr6_4:79923063-79923082 Msa0998700:CDS 35.0%
AATATTTATGGGACAGGAAC+AGG - chr6_4:79923096-79923115 Msa0998700:CDS 35.0%
AACACCTTGGTGAGAAAAAA+GGG - chr6_4:79923241-79923260 Msa0998700:five_prime_UTR 35.0%
!!! TAATCCCTTTTTTCTCACCA+AGG + chr6_4:79923248-79923267 None:intergenic 35.0%
TGGTGAGAAAAAAGGGATTA+TGG - chr6_4:79923248-79923267 Msa0998700:five_prime_UTR 35.0%
ATGTCTCAATATCAACAAGG+TGG - chr6_4:79922185-79922204 Msa0998700:CDS 35.0%
GATTGCCATATTGATCAACT+TGG + chr6_4:79922259-79922278 None:intergenic 35.0%
TTTATATCTAATGCAGGTGG+TGG - chr6_4:79922595-79922614 Msa0998700:CDS 35.0%
GGTAATGATATTGATGGAAC+CGG - chr6_4:79922625-79922644 Msa0998700:CDS 35.0%
GTAATGATATTGATGGAACC+GGG - chr6_4:79922626-79922645 Msa0998700:CDS 35.0%
AAGATCAAGGAGAAAATTCC+TGG - chr6_4:79922733-79922752 Msa0998700:CDS 35.0%
CAACAACATGGAGAAAATAG+AGG - chr6_4:79922847-79922866 Msa0998700:intron 35.0%
CAACAACATGGAGATAATAG+AGG - chr6_4:79923030-79923049 Msa0998700:CDS 35.0%
AAGATTAAGGAGAAGATTCC+TGG - chr6_4:79923063-79923082 Msa0998700:CDS 35.0%
AATATTTATGGGACAGGAAC+AGG - chr6_4:79923096-79923115 Msa0998700:CDS 35.0%
AACACCTTGGTGAGAAAAAA+GGG - chr6_4:79923241-79923260 Msa0998700:five_prime_UTR 35.0%
!!! TAATCCCTTTTTTCTCACCA+AGG + chr6_4:79923248-79923267 None:intergenic 35.0%
TGGTGAGAAAAAAGGGATTA+TGG - chr6_4:79923248-79923267 Msa0998700:five_prime_UTR 35.0%
!! ACTGGTAGGGTTGATGAATA+TGG - chr6_4:79922215-79922234 Msa0998700:CDS 40.0%
CATATTGATCAACTTGGCCT+TGG + chr6_4:79922253-79922272 None:intergenic 40.0%
!! CAAGGCCAAGTTGATCAATA+TGG - chr6_4:79922251-79922270 Msa0998700:CDS 40.0%
CAATATGGCAATCCCATTAG+TGG - chr6_4:79922266-79922285 Msa0998700:CDS 40.0%
CAACTCCATGATGTTGTTGA+TGG + chr6_4:79922325-79922344 None:intergenic 40.0%
! ATGGAGTTGACACAGGTTTT+GGG - chr6_4:79922336-79922355 Msa0998700:CDS 40.0%
! TTTTGTGTCTGACTGAAGCA+TGG - chr6_4:79922489-79922508 Msa0998700:CDS 40.0%
GAACTGGACATGATAACAGA+GGG - chr6_4:79922701-79922720 Msa0998700:CDS 40.0%
AACTGGACATGATAACAGAG+GGG - chr6_4:79922702-79922721 Msa0998700:CDS 40.0%
ACAACTGGTTATGGTGATAC+TGG - chr6_4:79922793-79922812 Msa0998700:intron 40.0%
TGGAGAAAATAGAGGAGTTG+TGG - chr6_4:79922855-79922874 Msa0998700:intron 40.0%
AAGATCAAGGAGAAGATTCC+TGG - chr6_4:79922880-79922899 Msa0998700:intron 40.0%
! TGGACAAGAGTATGGAAAAG+AGG - chr6_4:79923197-79923216 Msa0998700:CDS 40.0%
! GGACAAGAGTATGGAAAAGA+GGG - chr6_4:79923198-79923217 Msa0998700:CDS 40.0%
TATGGAAAAGAGGGTCATCA+TGG - chr6_4:79923207-79923226 Msa0998700:CDS 40.0%
CAACACCTTGGTGAGAAAAA+AGG - chr6_4:79923240-79923259 Msa0998700:five_prime_UTR 40.0%
!! ACTGGTAGGGTTGATGAATA+TGG - chr6_4:79922215-79922234 Msa0998700:CDS 40.0%
CATATTGATCAACTTGGCCT+TGG + chr6_4:79922253-79922272 None:intergenic 40.0%
!! CAAGGCCAAGTTGATCAATA+TGG - chr6_4:79922251-79922270 Msa0998700:CDS 40.0%
CAATATGGCAATCCCATTAG+TGG - chr6_4:79922266-79922285 Msa0998700:CDS 40.0%
CAACTCCATGATGTTGTTGA+TGG + chr6_4:79922325-79922344 None:intergenic 40.0%
! ATGGAGTTGACACAGGTTTT+GGG - chr6_4:79922336-79922355 Msa0998700:CDS 40.0%
! TTTTGTGTCTGACTGAAGCA+TGG - chr6_4:79922489-79922508 Msa0998700:CDS 40.0%
GAACTGGACATGATAACAGA+GGG - chr6_4:79922701-79922720 Msa0998700:CDS 40.0%
AACTGGACATGATAACAGAG+GGG - chr6_4:79922702-79922721 Msa0998700:CDS 40.0%
ACAACTGGTTATGGTGATAC+TGG - chr6_4:79922793-79922812 Msa0998700:intron 40.0%
TGGAGAAAATAGAGGAGTTG+TGG - chr6_4:79922855-79922874 Msa0998700:intron 40.0%
AAGATCAAGGAGAAGATTCC+TGG - chr6_4:79922880-79922899 Msa0998700:intron 40.0%
! TGGACAAGAGTATGGAAAAG+AGG - chr6_4:79923197-79923216 Msa0998700:CDS 40.0%
! GGACAAGAGTATGGAAAAGA+GGG - chr6_4:79923198-79923217 Msa0998700:CDS 40.0%
TATGGAAAAGAGGGTCATCA+TGG - chr6_4:79923207-79923226 Msa0998700:CDS 40.0%
CAACACCTTGGTGAGAAAAA+AGG - chr6_4:79923240-79923259 Msa0998700:five_prime_UTR 40.0%
CAACAAGGTGGTGATCAAAC+TGG - chr6_4:79922197-79922216 Msa0998700:CDS 45.0%
AAGGTGGTGATCAAACTGGT+AGG - chr6_4:79922201-79922220 Msa0998700:CDS 45.0%
AGGTGGTGATCAAACTGGTA+GGG - chr6_4:79922202-79922221 Msa0998700:CDS 45.0%
TATGGCAATCCCATTAGTGG+TGG - chr6_4:79922269-79922288 Msa0998700:CDS 45.0%
GGACACCATCAACAACATCA+TGG - chr6_4:79922317-79922336 Msa0998700:CDS 45.0%
CAACATCATGGAGTTGACAC+AGG - chr6_4:79922329-79922348 Msa0998700:CDS 45.0%
! CATGGAGTTGACACAGGTTT+TGG - chr6_4:79922335-79922354 Msa0998700:CDS 45.0%
!! ACAGGTACTGGTACAGGATA+TGG - chr6_4:79922365-79922384 Msa0998700:CDS 45.0%
! TCTAATGCAGGTGGTGGTTA+TGG - chr6_4:79922601-79922620 Msa0998700:CDS 45.0%
GATATTGATGGAACCGGGTA+TGG - chr6_4:79922631-79922650 Msa0998700:CDS 45.0%
GGAACTGGACATGATAACAG+AGG - chr6_4:79922700-79922719 Msa0998700:CDS 45.0%
ACATGATAACAGAGGGGTAG+TGG - chr6_4:79922708-79922727 Msa0998700:CDS 45.0%
AAGGAGAAAATTCCTGGCAC+TGG - chr6_4:79922739-79922758 Msa0998700:CDS 45.0%
! AAAATTCCTGGCACTGGAAC+TGG - chr6_4:79922745-79922764 Msa0998700:CDS 45.0%
GGTTATGGTGATACTGGTGT+TGG - chr6_4:79922799-79922818 Msa0998700:intron 45.0%
!! GGTGTTGGTCATCAACAACA+TGG - chr6_4:79922835-79922854 Msa0998700:intron 45.0%
AGGAGTTGTGGACAAGATCA+AGG - chr6_4:79922867-79922886 Msa0998700:intron 45.0%
AAGGAGAAGATTCCTGGAAC+TGG - chr6_4:79922886-79922905 Msa0998700:intron 45.0%
AAGATTCCTGGAACTGGAAC+TGG - chr6_4:79922892-79922911 Msa0998700:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_4:79922919-79922938 Msa0998700:intron 45.0%
!! ACAACTGGTTATGGTGCTAC+TGG - chr6_4:79922928-79922947 Msa0998700:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_4:79922919-79922938 Msa0998700:intron 45.0%
!! GGTTATGGTGCTACTGATGT+TGG - chr6_4:79922982-79923001 Msa0998700:intron 45.0%
GATGTTGGTCATGGAACAAC+TGG - chr6_4:79922997-79923016 Msa0998700:intron 45.0%
!! GGTGTTGGTCATCAACAACA+TGG - chr6_4:79922835-79922854 Msa0998700:intron 45.0%
TGGAGATAATAGAGGAGCTG+TGG - chr6_4:79923038-79923057 Msa0998700:CDS 45.0%
AGGAGCTGTGGACAAGATTA+AGG - chr6_4:79923050-79923069 Msa0998700:CDS 45.0%
CATGGACATGGAACAACTAC+TGG - chr6_4:79923162-79923181 Msa0998700:CDS 45.0%
! CATGGAACAACTACTGGCTA+TGG - chr6_4:79923168-79923187 Msa0998700:CDS 45.0%
AAGGAGAAGATTCCTGGTAC+TGG - chr6_4:79923069-79923088 Msa0998700:CDS 45.0%
ACTGGATCATGTACTGGACA+TGG - chr6_4:79923297-79923316 Msa0998700:five_prime_UTR 45.0%
CAACAAGGTGGTGATCAAAC+TGG - chr6_4:79922197-79922216 Msa0998700:CDS 45.0%
AAGGTGGTGATCAAACTGGT+AGG - chr6_4:79922201-79922220 Msa0998700:CDS 45.0%
AGGTGGTGATCAAACTGGTA+GGG - chr6_4:79922202-79922221 Msa0998700:CDS 45.0%
TATGGCAATCCCATTAGTGG+TGG - chr6_4:79922269-79922288 Msa0998700:CDS 45.0%
GGACACCATCAACAACATCA+TGG - chr6_4:79922317-79922336 Msa0998700:CDS 45.0%
CAACATCATGGAGTTGACAC+AGG - chr6_4:79922329-79922348 Msa0998700:CDS 45.0%
! CATGGAGTTGACACAGGTTT+TGG - chr6_4:79922335-79922354 Msa0998700:CDS 45.0%
!! ACAGGTACTGGTACAGGATA+TGG - chr6_4:79922365-79922384 Msa0998700:CDS 45.0%
! TCTAATGCAGGTGGTGGTTA+TGG - chr6_4:79922601-79922620 Msa0998700:CDS 45.0%
GATATTGATGGAACCGGGTA+TGG - chr6_4:79922631-79922650 Msa0998700:CDS 45.0%
GGAACTGGACATGATAACAG+AGG - chr6_4:79922700-79922719 Msa0998700:CDS 45.0%
ACATGATAACAGAGGGGTAG+TGG - chr6_4:79922708-79922727 Msa0998700:CDS 45.0%
AAGGAGAAAATTCCTGGCAC+TGG - chr6_4:79922739-79922758 Msa0998700:CDS 45.0%
! AAAATTCCTGGCACTGGAAC+TGG - chr6_4:79922745-79922764 Msa0998700:CDS 45.0%
GGTTATGGTGATACTGGTGT+TGG - chr6_4:79922799-79922818 Msa0998700:intron 45.0%
!! GGTGTTGGTCATCAACAACA+TGG - chr6_4:79922835-79922854 Msa0998700:intron 45.0%
AGGAGTTGTGGACAAGATCA+AGG - chr6_4:79922867-79922886 Msa0998700:intron 45.0%
AAGGAGAAGATTCCTGGAAC+TGG - chr6_4:79922886-79922905 Msa0998700:intron 45.0%
AAGATTCCTGGAACTGGAAC+TGG - chr6_4:79922892-79922911 Msa0998700:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_4:79922919-79922938 Msa0998700:intron 45.0%
!! ACAACTGGTTATGGTGCTAC+TGG - chr6_4:79922928-79922947 Msa0998700:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_4:79922919-79922938 Msa0998700:intron 45.0%
!! GGTTATGGTGCTACTGATGT+TGG - chr6_4:79922982-79923001 Msa0998700:intron 45.0%
GATGTTGGTCATGGAACAAC+TGG - chr6_4:79922997-79923016 Msa0998700:intron 45.0%
!! GGTGTTGGTCATCAACAACA+TGG - chr6_4:79922835-79922854 Msa0998700:intron 45.0%
TGGAGATAATAGAGGAGCTG+TGG - chr6_4:79923038-79923057 Msa0998700:CDS 45.0%
AGGAGCTGTGGACAAGATTA+AGG - chr6_4:79923050-79923069 Msa0998700:CDS 45.0%
CATGGACATGGAACAACTAC+TGG - chr6_4:79923162-79923181 Msa0998700:CDS 45.0%
! CATGGAACAACTACTGGCTA+TGG - chr6_4:79923168-79923187 Msa0998700:CDS 45.0%
AAGGAGAAGATTCCTGGTAC+TGG - chr6_4:79923069-79923088 Msa0998700:CDS 45.0%
ACTGGATCATGTACTGGACA+TGG - chr6_4:79923297-79923316 Msa0998700:five_prime_UTR 45.0%
TATGGAAACCCCTTGAGCCA+AGG - chr6_4:79922233-79922252 Msa0998700:CDS 50.0%
!! TCAACTTGGCCTTGGCTCAA+GGG + chr6_4:79922245-79922264 None:intergenic 50.0%
!! ATCAACTTGGCCTTGGCTCA+AGG + chr6_4:79922246-79922265 None:intergenic 50.0%
GCAATCCCATTAGTGGTGGT+GGG - chr6_4:79922273-79922292 Msa0998700:CDS 50.0%
GTCATCCCACCACCACTAAT+GGG + chr6_4:79922281-79922300 None:intergenic 50.0%
AGTCATCCCACCACCACTAA+TGG + chr6_4:79922282-79922301 None:intergenic 50.0%
!! ATTAGTGGTGGTGGGATGAC+TGG - chr6_4:79922281-79922300 Msa0998700:CDS 50.0%
!! ATGACTGGTGCTACTGGTCA+TGG - chr6_4:79922296-79922315 Msa0998700:CDS 50.0%
!!! ACAGGTTTTGGGAGCAACAC+AGG - chr6_4:79922347-79922366 Msa0998700:CDS 50.0%
TTTGGGAGCAACACAGGTAC+TGG - chr6_4:79922353-79922372 Msa0998700:CDS 50.0%
!! AGCAACACAGGTACTGGTAC+AGG - chr6_4:79922359-79922378 Msa0998700:CDS 50.0%
ACAGGATATGGAACACACGC+TGG - chr6_4:79922377-79922396 Msa0998700:CDS 50.0%
TATGGAACACACGCTGGTAG+TGG - chr6_4:79922383-79922402 Msa0998700:CDS 50.0%
ATGGAACACACGCTGGTAGT+GGG - chr6_4:79922384-79922403 Msa0998700:CDS 50.0%
! AATGCAGGTGGTGGTTATGG+AGG - chr6_4:79922604-79922623 Msa0998700:CDS 50.0%
ATGGAACCGGGTATGGTACA+GGG - chr6_4:79922638-79922657 Msa0998700:CDS 50.0%
TATGGTACAGGGACAGGAAC+CGG - chr6_4:79922649-79922668 Msa0998700:CDS 50.0%
!! AGGGGTAGTGGACAAGATCA+AGG - chr6_4:79922720-79922739 Msa0998700:CDS 50.0%
ACTGGAACTGGAACTGGAAC+TGG - chr6_4:79922757-79922776 Msa0998700:CDS 50.0%
ACTGGAACTGGAACTGGAAC+AGG - chr6_4:79922757-79922776 Msa0998700:CDS 50.0%
GGTCGTGGAACAACTGGTTA+TGG - chr6_4:79922784-79922803 Msa0998700:CDS 50.0%
!! GGTGATACTGGTGTTGGTCA+AGG - chr6_4:79922805-79922824 Msa0998700:intron 50.0%
!! GGTGTTGGTCAAGGAACAAC+TGG - chr6_4:79922814-79922833 Msa0998700:intron 50.0%
GGTCAAGGAACAACTGGTGT+TGG - chr6_4:79922820-79922839 Msa0998700:intron 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_4:79922904-79922923 Msa0998700:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_4:79922913-79922932 Msa0998700:intron 50.0%
!! GGTTATGGTGCTACTGGAAC+TGG - chr6_4:79922934-79922953 Msa0998700:intron 50.0%
ACTGGAACTGGAACTGGAAC+AGG - chr6_4:79922757-79922776 Msa0998700:CDS 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_4:79922904-79922923 Msa0998700:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_4:79922913-79922932 Msa0998700:intron 50.0%
!! GGTGCTACTGATGTTGGTCA+TGG - chr6_4:79922988-79923007 Msa0998700:intron 50.0%
GGTCATGGAACAACTGGTGT+TGG - chr6_4:79923003-79923022 Msa0998700:CDS 50.0%
TATGGGACAGGAACAGGAAC+TGG - chr6_4:79923102-79923121 Msa0998700:CDS 50.0%
ACAGGAACAGGAACTGGAAC+TGG - chr6_4:79923108-79923127 Msa0998700:CDS 50.0%
ACAGGAACTGGAACTGGAAC+TGG - chr6_4:79923114-79923133 Msa0998700:CDS 50.0%
ACTGGAACTGGAACTGGACA+TGG - chr6_4:79923120-79923139 Msa0998700:CDS 50.0%
CTGGAACTGGAACTGGACAT+GGG - chr6_4:79923121-79923140 Msa0998700:CDS 50.0%
ACAGGAACAGGAACTGGACA+TGG - chr6_4:79923144-79923163 Msa0998700:CDS 50.0%
ACAGGAACTGGACATGGACA+TGG - chr6_4:79923150-79923169 Msa0998700:CDS 50.0%
! ACTACTGGCTATGGAAGCAC+TGG - chr6_4:79923177-79923196 Msa0998700:CDS 50.0%
!! GGAAGCACTGGACAAGAGTA+TGG - chr6_4:79923189-79923208 Msa0998700:CDS 50.0%
GGACATGATGAGCAACACCT+TGG - chr6_4:79923228-79923247 Msa0998700:exon 50.0%
CCAGTACATGATCCAGTACC+AGG + chr6_4:79923294-79923313 None:intergenic 50.0%
! CCTGGTACTGGATCATGTAC+TGG - chr6_4:79923291-79923310 Msa0998700:five_prime_UTR 50.0%
TATGGAAACCCCTTGAGCCA+AGG - chr6_4:79922233-79922252 Msa0998700:CDS 50.0%
!! TCAACTTGGCCTTGGCTCAA+GGG + chr6_4:79922245-79922264 None:intergenic 50.0%
!! ATCAACTTGGCCTTGGCTCA+AGG + chr6_4:79922246-79922265 None:intergenic 50.0%
GCAATCCCATTAGTGGTGGT+GGG - chr6_4:79922273-79922292 Msa0998700:CDS 50.0%
GTCATCCCACCACCACTAAT+GGG + chr6_4:79922281-79922300 None:intergenic 50.0%
AGTCATCCCACCACCACTAA+TGG + chr6_4:79922282-79922301 None:intergenic 50.0%
!! ATTAGTGGTGGTGGGATGAC+TGG - chr6_4:79922281-79922300 Msa0998700:CDS 50.0%
!! ATGACTGGTGCTACTGGTCA+TGG - chr6_4:79922296-79922315 Msa0998700:CDS 50.0%
!!! ACAGGTTTTGGGAGCAACAC+AGG - chr6_4:79922347-79922366 Msa0998700:CDS 50.0%
TTTGGGAGCAACACAGGTAC+TGG - chr6_4:79922353-79922372 Msa0998700:CDS 50.0%
!! AGCAACACAGGTACTGGTAC+AGG - chr6_4:79922359-79922378 Msa0998700:CDS 50.0%
ACAGGATATGGAACACACGC+TGG - chr6_4:79922377-79922396 Msa0998700:CDS 50.0%
TATGGAACACACGCTGGTAG+TGG - chr6_4:79922383-79922402 Msa0998700:CDS 50.0%
ATGGAACACACGCTGGTAGT+GGG - chr6_4:79922384-79922403 Msa0998700:CDS 50.0%
! AATGCAGGTGGTGGTTATGG+AGG - chr6_4:79922604-79922623 Msa0998700:CDS 50.0%
ATGGAACCGGGTATGGTACA+GGG - chr6_4:79922638-79922657 Msa0998700:CDS 50.0%
TATGGTACAGGGACAGGAAC+CGG - chr6_4:79922649-79922668 Msa0998700:CDS 50.0%
!! AGGGGTAGTGGACAAGATCA+AGG - chr6_4:79922720-79922739 Msa0998700:CDS 50.0%
ACTGGAACTGGAACTGGAAC+TGG - chr6_4:79922757-79922776 Msa0998700:CDS 50.0%
ACTGGAACTGGAACTGGAAC+AGG - chr6_4:79922757-79922776 Msa0998700:CDS 50.0%
GGTCGTGGAACAACTGGTTA+TGG - chr6_4:79922784-79922803 Msa0998700:CDS 50.0%
!! GGTGATACTGGTGTTGGTCA+AGG - chr6_4:79922805-79922824 Msa0998700:intron 50.0%
!! GGTGTTGGTCAAGGAACAAC+TGG - chr6_4:79922814-79922833 Msa0998700:intron 50.0%
GGTCAAGGAACAACTGGTGT+TGG - chr6_4:79922820-79922839 Msa0998700:intron 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_4:79922904-79922923 Msa0998700:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_4:79922913-79922932 Msa0998700:intron 50.0%
!! GGTTATGGTGCTACTGGAAC+TGG - chr6_4:79922934-79922953 Msa0998700:intron 50.0%
ACTGGAACTGGAACTGGAAC+AGG - chr6_4:79922757-79922776 Msa0998700:CDS 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_4:79922904-79922923 Msa0998700:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_4:79922913-79922932 Msa0998700:intron 50.0%
!! GGTGCTACTGATGTTGGTCA+TGG - chr6_4:79922988-79923007 Msa0998700:intron 50.0%
GGTCATGGAACAACTGGTGT+TGG - chr6_4:79923003-79923022 Msa0998700:CDS 50.0%
TATGGGACAGGAACAGGAAC+TGG - chr6_4:79923102-79923121 Msa0998700:CDS 50.0%
ACAGGAACAGGAACTGGAAC+TGG - chr6_4:79923108-79923127 Msa0998700:CDS 50.0%
ACAGGAACTGGAACTGGAAC+TGG - chr6_4:79923114-79923133 Msa0998700:CDS 50.0%
ACTGGAACTGGAACTGGACA+TGG - chr6_4:79923120-79923139 Msa0998700:CDS 50.0%
CTGGAACTGGAACTGGACAT+GGG - chr6_4:79923121-79923140 Msa0998700:CDS 50.0%
ACAGGAACAGGAACTGGACA+TGG - chr6_4:79923144-79923163 Msa0998700:CDS 50.0%
ACAGGAACTGGACATGGACA+TGG - chr6_4:79923150-79923169 Msa0998700:CDS 50.0%
! ACTACTGGCTATGGAAGCAC+TGG - chr6_4:79923177-79923196 Msa0998700:CDS 50.0%
!! GGAAGCACTGGACAAGAGTA+TGG - chr6_4:79923189-79923208 Msa0998700:CDS 50.0%
GGACATGATGAGCAACACCT+TGG - chr6_4:79923228-79923247 Msa0998700:exon 50.0%
CCAGTACATGATCCAGTACC+AGG + chr6_4:79923294-79923313 None:intergenic 50.0%
! CCTGGTACTGGATCATGTAC+TGG - chr6_4:79923291-79923310 Msa0998700:five_prime_UTR 50.0%
!! CAACTTGGCCTTGGCTCAAG+GGG + chr6_4:79922244-79922263 None:intergenic 55.0%
GGCAATCCCATTAGTGGTGG+TGG - chr6_4:79922272-79922291 Msa0998700:CDS 55.0%
! TGGAACACACGCTGGTAGTG+GGG - chr6_4:79922385-79922404 Msa0998700:CDS 55.0%
GATGGAACCGGGTATGGTAC+AGG - chr6_4:79922637-79922656 Msa0998700:CDS 55.0%
TCCTGTCCCTGTACCATACC+CGG + chr6_4:79922647-79922666 None:intergenic 55.0%
AGCTCCATAGCCGGTTGTTC+CGG + chr6_4:79922671-79922690 None:intergenic 55.0%
ACAACCGGCTATGGAGCTAC+AGG - chr6_4:79922673-79922692 Msa0998700:CDS 55.0%
ACTGGAACTGGAACAGGTCG+TGG - chr6_4:79922769-79922788 Msa0998700:CDS 55.0%
GGAACAGGTCGTGGAACAAC+TGG - chr6_4:79922778-79922797 Msa0998700:CDS 55.0%
CCTGTTCCAGTTCCAGTTCC+AGG + chr6_4:79922766-79922785 None:intergenic 55.0%
CCTGGAACTGGAACTGGAAC+AGG - chr6_4:79922898-79922917 Msa0998700:intron 55.0%
!! GGTGCTACTGGAACTGGAAC+TGG - chr6_4:79922940-79922959 Msa0998700:intron 55.0%
ACTGGAACTGGACATGGGAC+AGG - chr6_4:79923126-79923145 Msa0998700:CDS 55.0%
ACTGGACATGGGACAGGAAC+AGG - chr6_4:79923132-79923151 Msa0998700:CDS 55.0%
CATGGGACAGGAACAGGAAC+TGG - chr6_4:79923138-79923157 Msa0998700:CDS 55.0%
!! CAACTTGGCCTTGGCTCAAG+GGG + chr6_4:79922244-79922263 None:intergenic 55.0%
GGCAATCCCATTAGTGGTGG+TGG - chr6_4:79922272-79922291 Msa0998700:CDS 55.0%
! TGGAACACACGCTGGTAGTG+GGG - chr6_4:79922385-79922404 Msa0998700:CDS 55.0%
GATGGAACCGGGTATGGTAC+AGG - chr6_4:79922637-79922656 Msa0998700:CDS 55.0%
TCCTGTCCCTGTACCATACC+CGG + chr6_4:79922647-79922666 None:intergenic 55.0%
AGCTCCATAGCCGGTTGTTC+CGG + chr6_4:79922671-79922690 None:intergenic 55.0%
ACAACCGGCTATGGAGCTAC+AGG - chr6_4:79922673-79922692 Msa0998700:CDS 55.0%
ACTGGAACTGGAACAGGTCG+TGG - chr6_4:79922769-79922788 Msa0998700:CDS 55.0%
GGAACAGGTCGTGGAACAAC+TGG - chr6_4:79922778-79922797 Msa0998700:CDS 55.0%
CCTGTTCCAGTTCCAGTTCC+AGG + chr6_4:79922766-79922785 None:intergenic 55.0%
CCTGGAACTGGAACTGGAAC+AGG - chr6_4:79922898-79922917 Msa0998700:intron 55.0%
!! GGTGCTACTGGAACTGGAAC+TGG - chr6_4:79922940-79922959 Msa0998700:intron 55.0%
ACTGGAACTGGACATGGGAC+AGG - chr6_4:79923126-79923145 Msa0998700:CDS 55.0%
ACTGGACATGGGACAGGAAC+AGG - chr6_4:79923132-79923151 Msa0998700:CDS 55.0%
CATGGGACAGGAACAGGAAC+TGG - chr6_4:79923138-79923157 Msa0998700:CDS 55.0%
!! GGTGGGATGACTGGTGCTAC+TGG - chr6_4:79922290-79922309 Msa0998700:CDS 60.0%
!! GGAACACACGCTGGTAGTGG+GGG - chr6_4:79922386-79922405 Msa0998700:CDS 60.0%
!! GAACACACGCTGGTAGTGGG+GGG - chr6_4:79922387-79922406 Msa0998700:CDS 60.0%
!! AACACACGCTGGTAGTGGGG+GGG - chr6_4:79922388-79922407 Msa0998700:CDS 60.0%
ACCGGGTATGGTACAGGGAC+AGG - chr6_4:79922643-79922662 Msa0998700:CDS 60.0%
GGGACAGGAACCGGAACAAC+CGG - chr6_4:79922658-79922677 Msa0998700:CDS 60.0%
GGAACCGGAACAACCGGCTA+TGG - chr6_4:79922664-79922683 Msa0998700:CDS 60.0%
ACCGGCTATGGAGCTACAGG+TGG - chr6_4:79922676-79922695 Msa0998700:CDS 60.0%
GCCACCTGTAGCTCCATAGC+CGG + chr6_4:79922680-79922699 None:intergenic 60.0%
GGCTATGGAGCTACAGGTGG+CGG - chr6_4:79922679-79922698 Msa0998700:CDS 60.0%
CCAGTTCCAGTTCCAGTGCC+AGG + chr6_4:79922754-79922773 None:intergenic 60.0%
! CCTGGCACTGGAACTGGAAC+TGG - chr6_4:79922751-79922770 Msa0998700:CDS 60.0%
!! GGTGGGATGACTGGTGCTAC+TGG - chr6_4:79922290-79922309 Msa0998700:CDS 60.0%
!! GGAACACACGCTGGTAGTGG+GGG - chr6_4:79922386-79922405 Msa0998700:CDS 60.0%
!! GAACACACGCTGGTAGTGGG+GGG - chr6_4:79922387-79922406 Msa0998700:CDS 60.0%
!! AACACACGCTGGTAGTGGGG+GGG - chr6_4:79922388-79922407 Msa0998700:CDS 60.0%
ACCGGGTATGGTACAGGGAC+AGG - chr6_4:79922643-79922662 Msa0998700:CDS 60.0%
GGGACAGGAACCGGAACAAC+CGG - chr6_4:79922658-79922677 Msa0998700:CDS 60.0%
GGAACCGGAACAACCGGCTA+TGG - chr6_4:79922664-79922683 Msa0998700:CDS 60.0%
ACCGGCTATGGAGCTACAGG+TGG - chr6_4:79922676-79922695 Msa0998700:CDS 60.0%
GCCACCTGTAGCTCCATAGC+CGG + chr6_4:79922680-79922699 None:intergenic 60.0%
GGCTATGGAGCTACAGGTGG+CGG - chr6_4:79922679-79922698 Msa0998700:CDS 60.0%
CCAGTTCCAGTTCCAGTGCC+AGG + chr6_4:79922754-79922773 None:intergenic 60.0%
! CCTGGCACTGGAACTGGAAC+TGG - chr6_4:79922751-79922770 Msa0998700:CDS 60.0%
!! GGAGCTACAGGTGGCGGAAC+TGG - chr6_4:79922685-79922704 Msa0998700:CDS 65.0%
!! GGAGCTACAGGTGGCGGAAC+TGG - chr6_4:79922685-79922704 Msa0998700:CDS 65.0%
!! GGTAGTGGGGGGGCTCCCAC+AGG - chr6_4:79922398-79922417 Msa0998700:CDS 75.0%
!! GGTAGTGGGGGGGCTCCCAC+AGG - chr6_4:79922398-79922417 Msa0998700:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 79922087 79923335 79922087 ID=Msa0998700;Name=Msa0998700
chr6_4 mRNA 79922087 79923335 79922087 ID=Msa0998700-mRNA-1;Parent=Msa0998700;Name=Msa0998700-mRNA-1;_AED=0.03;_eAED=0.04;_QI=98|1|0.5|1|1|1|2|0|319
chr6_4 exon 79922087 79922811 79922087 ID=Msa0998700-mRNA-1:exon:15163;Parent=Msa0998700-mRNA-1
chr6_4 exon 79923003 79923335 79923003 ID=Msa0998700-mRNA-1:exon:15162;Parent=Msa0998700-mRNA-1
chr6_4 five_prime_UTR 79923238 79923335 79923238 ID=Msa0998700-mRNA-1:five_prime_utr;Parent=Msa0998700-mRNA-1
chr6_4 CDS 79923003 79923237 79923003 ID=Msa0998700-mRNA-1:cds;Parent=Msa0998700-mRNA-1
chr6_4 CDS 79922087 79922811 79922087 ID=Msa0998700-mRNA-1:cds;Parent=Msa0998700-mRNA-1
Gene Sequence

>Msa0998700

ATGTCTCAATATCAACAAGGTGGTGATCAAACTGGTAGGGTTGATGAATATGGAAACCCCTTGAGCCAAGGCCAAGTTGATCAATATGGCAATCCCATTAGTGGTGGTGGGATGACTGGTGCTACTGGTCATGGACACCATCAACAACATCATGGAGTTGACACAGGTTTTGGGAGCAACACAGGTACTGGTACAGGATATGGAACACACGCTGGTAGTGGGGGGGCTCCCACAGGTGGTGGTTATGGAGGTAATGATATTGATGGAACCGGGTATGGTACAGGGACAGGAACCGGAACAACCGGCTATGGAGCTACAGGTGGCGGAACTGGACATGATAACAGAGGGGTAGTGGACAAGATCAAGGAGAAAATTCCTGGCACTGGAACTGGAACTGGAACTGGAACAGGTCGTGGAACAACTGGTTATGGTGATACTGGTGTTGGTCAAGGAACAACTGGTGTTGGTCATCAACAACATGGAGAAAATAGAGGAGTTGTGGACAAGATCAAGGAGAAGATTCCTGGAACTGGAACTGGAACAGGTCATGGAACAACTGGTTATGGTGCTACTGGAACTGGAACTGGAACAGGTCATGGAACAACTGGTTATGGTGCTACTGATGTTGGTCATGGAACAACTGGTGTTGGTCATCAACAACATGGAGATAATAGAGGAGCTGTGGACAAGATTAAGGAGAAGATTCCTGGTACTGAACAAAATATTTATGGGACAGGAACAGGAACTGGAACTGGAACTGGACATGGGACAGGAACAGGAACTGGACATGGACATGGAACAACTACTGGCTATGGAAGCACTGGACAAGAGTATGGAAAAGAGGGTCATCATGGACATGATGAGCAACACCTTGGTGAGAAAAAAGGGATTATGGAAAAAATTAAGGAGAAGATTCCTGGTACTGGATCATGTACTGGACATGGACAAACTAAACCATAA
Protein sequence

>Msa0998700

MSQYQQGGDQTGRVDEYGNPLSQGQVDQYGNPISGGGMTGATGHGHHQQHHGVDTGFGSNTGTGTGYGTHAGSGGAPTGGGYGGNDIDGTGYGTGTGTGTTGYGATGGGTGHDNRGVVDKIKEKIPGTGTGTGTGTGRGTTGYGDTGVGQGTTGVGHQQHGENRGVVDKIKEKIPGTGTGTGHGTTGYGATGTGTGTGHGTTGYGATDVGHGTTGVGHQQHGDNRGAVDKIKEKIPGTEQNIYGTGTGTGTGTGHGTGTGTGHGHGTTTGYGSTGQEYGKEGHHGHDEQHLGEKKGIMEKIKEKIPGTGSCTGHGQTKP*