AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898860 MtrunA17_Chr6g0484671 72.477 109 17 3 17 113 144 251 4.22e-25 96.3
Msa0898860 MtrunA17_Chr6g0484671 59.375 128 21 6 18 115 186 312 1.77e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGCTGCTAGTACTTA+TGG 0.182311 6_1:-93480069 Msa0898860:CDS
GCAGGCATCCATATATATTA+TGG 0.251658 6_1:+93479705 None:intergenic
AAAATATGTATGTTGTATTA+AGG 0.273872 6_1:-93479529 Msa0898860:three_prime_UTR
GGAGCTACCGGTGGCGGAAC+TGG 0.275507 6_1:-93480147 Msa0898860:CDS
AGGGATTGTGGACAAGATTA+AGG 0.287150 6_1:-93479761 Msa0898860:CDS
AAGATTAAGGAGAAGCTTCC+TGG 0.308792 6_1:-93479748 Msa0898860:CDS
ACACTAAACCATAATATATA+TGG 0.322019 6_1:-93479713 Msa0898860:exon
CCTGTTCCAGTTCCAGTTCC+AGG 0.353061 6_1:+93479958 None:intergenic
AAGATTCCTGGAACTGGAAC+TGG 0.359093 6_1:-93479964 Msa0898860:CDS
TCTCAATATCAACAAGGTTA+TGG 0.374924 6_1:-93480168 Msa0898860:CDS
AGGGGTAATGGACAAGATTA+AGG 0.379804 6_1:-93480112 Msa0898860:CDS
AAGATCAAGGAGAAGATTCC+TGG 0.387597 6_1:-93479976 Msa0898860:CDS
CCTGGAACTGGAACTGGAAC+AGG 0.387624 6_1:-93479958 Msa0898860:intron
AAGATTAAGGCGAAAATTCC+CGG 0.410456 6_1:-93480099 Msa0898860:CDS
AAAATGCTGCTAGTACTTAT+GGG 0.425979 6_1:-93480068 Msa0898860:CDS
AAGGAGAAGATTCCTGGAAC+TGG 0.429498 6_1:-93479970 Msa0898860:CDS
TGGAGATAATAGAGGAGTTA+TGG 0.444393 6_1:-93480001 Msa0898860:CDS
ATTAAGGAATTGATATATGT+TGG 0.448768 6_1:-93479513 Msa0898860:three_prime_UTR
CATCAACAACATGGAAAGAA+AGG 0.456958 6_1:-93479781 Msa0898860:CDS
GGAACAGGTCATGGAACAAC+TGG 0.460620 6_1:-93479826 Msa0898860:intron
GGGACAGGACATGGAACAAC+TGG 0.471797 6_1:-93480042 Msa0898860:CDS
GGTCATGGAACAACTGGTTA+TGG 0.473670 6_1:-93479820 Msa0898860:CDS
TAGTGTCCTTGTCCATGTCC+AGG 0.475946 6_1:+93479730 None:intergenic
GAGCTACCGGTGGCGGAACT+GGG 0.485254 6_1:-93480146 Msa0898860:CDS
GCATGATAATAGAGGGGTAA+TGG 0.494411 6_1:-93480124 Msa0898860:CDS
ATATATGAGGTGTATAATGA+TGG 0.499150 6_1:-93479567 Msa0898860:three_prime_UTR
AGGAGTTATGGACAAGATCA+AGG 0.502550 6_1:-93479989 Msa0898860:CDS
AGTACTTATGGGACAGGGAC+AGG 0.509114 6_1:-93480057 Msa0898860:CDS
GCTGCTAGTACTTATGGGAC+AGG 0.515021 6_1:-93480063 Msa0898860:CDS
TAGAATAAATATGTGTGTAT+TGG 0.515610 6_1:-93479663 Msa0898860:three_prime_UTR
GGTTATGGAGCTACCGGTGG+CGG 0.520450 6_1:-93480153 Msa0898860:CDS
GGAACTGGGCATGATAATAG+AGG 0.529404 6_1:-93480132 Msa0898860:CDS
CAACAAGGTTATGGAGCTAC+CGG 0.539969 6_1:-93480159 Msa0898860:CDS
GGTTATGGTGGTGTTGGTCA+TGG 0.545868 6_1:-93479805 Msa0898860:CDS
ATCAACAACATGGAAAGAAA+GGG 0.547780 6_1:-93479780 Msa0898860:CDS
CAACAACATGGAGATAATAG+AGG 0.548264 6_1:-93480009 Msa0898860:CDS
ATCATGCCCAGTTCCGCCAC+CGG 0.554198 6_1:+93480140 None:intergenic
TGATTGATCATATCAAATGC+AGG 0.563232 6_1:+93479687 None:intergenic
AAGGAGAAGCTTCCTGGACA+TGG 0.566266 6_1:-93479742 Msa0898860:CDS
TATATGAGGTGTATAATGAT+GGG 0.568794 6_1:-93479566 Msa0898860:three_prime_UTR
TATGGGACAGGGACAGGACA+TGG 0.569049 6_1:-93480051 Msa0898860:CDS
ACATGGAAAGAAAGGGATTG+TGG 0.578076 6_1:-93479773 Msa0898860:CDS
TATATATCTCTTACATGAGG+TGG 0.578862 6_1:+93479585 None:intergenic
GGACATGGAACAACTGGTGT+TGG 0.586251 6_1:-93480036 Msa0898860:CDS
TCATGTAAGAGATATATATG+AGG 0.593392 6_1:-93479580 Msa0898860:three_prime_UTR
ACAACTGGTTATGGTGGTGT+TGG 0.599005 6_1:-93479811 Msa0898860:CDS
AAGCTTCCTGGACATGGACA+AGG 0.605612 6_1:-93479736 Msa0898860:CDS
GAACTGGGCATGATAATAGA+GGG 0.607970 6_1:-93480131 Msa0898860:CDS
CTGCTAGTACTTATGGGACA+GGG 0.654209 6_1:-93480062 Msa0898860:CDS
TCATATATATCTCTTACATG+AGG 0.665718 6_1:+93479582 None:intergenic
CAAGGTTATGGAGCTACCGG+TGG 0.670970 6_1:-93480156 Msa0898860:CDS
GGTGTTGGTCATCAACAACA+TGG 0.679464 6_1:-93480021 Msa0898860:CDS
GGTCATGGTCATCAACAACA+TGG 0.689366 6_1:-93479790 Msa0898860:CDS
AACTGGGCATGATAATAGAG+GGG 0.696526 6_1:-93480130 Msa0898860:CDS
CATGGAACAACTGGTTATGG+TGG 0.707484 6_1:-93479817 Msa0898860:CDS
ACAATGTCTCAATATCAACA+AGG 0.721195 6_1:-93480174 Msa0898860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATGTATGTTGTATTA+AGG - chr6_1:93480255-93480274 Msa0898860:five_prime_UTR 15.0%
!! AAAATATGTATGTTGTATTA+AGG - chr6_1:93480255-93480274 Msa0898860:five_prime_UTR 15.0%
!! ACACTAAACCATAATATATA+TGG - chr6_1:93480071-93480090 Msa0898860:CDS 20.0%
!! TAGAATAAATATGTGTGTAT+TGG - chr6_1:93480121-93480140 Msa0898860:CDS 20.0%
!! ATTAAGGAATTGATATATGT+TGG - chr6_1:93480271-93480290 Msa0898860:five_prime_UTR 20.0%
!! ACACTAAACCATAATATATA+TGG - chr6_1:93480071-93480090 Msa0898860:CDS 20.0%
!! TAGAATAAATATGTGTGTAT+TGG - chr6_1:93480121-93480140 Msa0898860:CDS 20.0%
!! ATTAAGGAATTGATATATGT+TGG - chr6_1:93480271-93480290 Msa0898860:five_prime_UTR 20.0%
!!! TTTTGTTTTCTTGGTTTCTA+AGG + chr6_1:93479551-93479570 None:intergenic 25.0%
! TCATATATATCTCTTACATG+AGG + chr6_1:93480205-93480224 None:intergenic 25.0%
! TCATGTAAGAGATATATATG+AGG - chr6_1:93480204-93480223 Msa0898860:five_prime_UTR 25.0%
! ATATATGAGGTGTATAATGA+TGG - chr6_1:93480217-93480236 Msa0898860:five_prime_UTR 25.0%
! TATATGAGGTGTATAATGAT+GGG - chr6_1:93480218-93480237 Msa0898860:five_prime_UTR 25.0%
!!! TTTTGTTTTCTTGGTTTCTA+AGG + chr6_1:93479551-93479570 None:intergenic 25.0%
! TCATATATATCTCTTACATG+AGG + chr6_1:93480205-93480224 None:intergenic 25.0%
! TCATGTAAGAGATATATATG+AGG - chr6_1:93480204-93480223 Msa0898860:five_prime_UTR 25.0%
! ATATATGAGGTGTATAATGA+TGG - chr6_1:93480217-93480236 Msa0898860:five_prime_UTR 25.0%
! TATATGAGGTGTATAATGAT+GGG - chr6_1:93480218-93480237 Msa0898860:five_prime_UTR 25.0%
!!! AACGTGAAGTTTTGTTTTCT+TGG + chr6_1:93479560-93479579 None:intergenic 30.0%
ACAATGTCTCAATATCAACA+AGG - chr6_1:93479610-93479629 Msa0898860:three_prime_UTR 30.0%
TCTCAATATCAACAAGGTTA+TGG - chr6_1:93479616-93479635 Msa0898860:three_prime_UTR 30.0%
AAAATGCTGCTAGTACTTAT+GGG - chr6_1:93479716-93479735 Msa0898860:exon 30.0%
ATCAACAACATGGAAAGAAA+GGG - chr6_1:93479893-93479912 Msa0898860:intron 30.0%
ATCAACAACATGGAAAGAAA+GGG - chr6_1:93479893-93479912 Msa0898860:intron 30.0%
TGATTGATCATATCAAATGC+AGG + chr6_1:93480100-93480119 None:intergenic 30.0%
TATATATCTCTTACATGAGG+TGG + chr6_1:93480202-93480221 None:intergenic 30.0%
!!! AACGTGAAGTTTTGTTTTCT+TGG + chr6_1:93479560-93479579 None:intergenic 30.0%
ACAATGTCTCAATATCAACA+AGG - chr6_1:93479610-93479629 Msa0898860:three_prime_UTR 30.0%
TCTCAATATCAACAAGGTTA+TGG - chr6_1:93479616-93479635 Msa0898860:three_prime_UTR 30.0%
AAAATGCTGCTAGTACTTAT+GGG - chr6_1:93479716-93479735 Msa0898860:exon 30.0%
ATCAACAACATGGAAAGAAA+GGG - chr6_1:93479893-93479912 Msa0898860:intron 30.0%
ATCAACAACATGGAAAGAAA+GGG - chr6_1:93479893-93479912 Msa0898860:intron 30.0%
TGATTGATCATATCAAATGC+AGG + chr6_1:93480100-93480119 None:intergenic 30.0%
TATATATCTCTTACATGAGG+TGG + chr6_1:93480202-93480221 None:intergenic 30.0%
AAGATTAAGGCGAAAATTCC+CGG - chr6_1:93479685-93479704 Msa0898860:three_prime_UTR 35.0%
CAAAATGCTGCTAGTACTTA+TGG - chr6_1:93479715-93479734 Msa0898860:exon 35.0%
CAACAACATGGAGATAATAG+AGG - chr6_1:93479775-93479794 Msa0898860:CDS 35.0%
TGGAGATAATAGAGGAGTTA+TGG - chr6_1:93479783-93479802 Msa0898860:CDS 35.0%
CATCAACAACATGGAAAGAA+AGG - chr6_1:93479892-93479911 Msa0898860:intron 35.0%
TCAACAACATGGAAAGAAAG+GGG - chr6_1:93479894-93479913 Msa0898860:intron 35.0%
AAGATTAAGGAGAAGATTCC+TGG - chr6_1:93479925-93479944 Msa0898860:intron 35.0%
CATCAACAACATGGAAAGAA+AGG - chr6_1:93479892-93479911 Msa0898860:intron 35.0%
GCAGGCATCCATATATATTA+TGG + chr6_1:93480082-93480101 None:intergenic 35.0%
AAGATTAAGGCGAAAATTCC+CGG - chr6_1:93479685-93479704 Msa0898860:three_prime_UTR 35.0%
CAAAATGCTGCTAGTACTTA+TGG - chr6_1:93479715-93479734 Msa0898860:exon 35.0%
CAACAACATGGAGATAATAG+AGG - chr6_1:93479775-93479794 Msa0898860:CDS 35.0%
TGGAGATAATAGAGGAGTTA+TGG - chr6_1:93479783-93479802 Msa0898860:CDS 35.0%
CATCAACAACATGGAAAGAA+AGG - chr6_1:93479892-93479911 Msa0898860:intron 35.0%
TCAACAACATGGAAAGAAAG+GGG - chr6_1:93479894-93479913 Msa0898860:intron 35.0%
AAGATTAAGGAGAAGATTCC+TGG - chr6_1:93479925-93479944 Msa0898860:intron 35.0%
CATCAACAACATGGAAAGAA+AGG - chr6_1:93479892-93479911 Msa0898860:intron 35.0%
GCAGGCATCCATATATATTA+TGG + chr6_1:93480082-93480101 None:intergenic 35.0%
GAACTGGGCATGATAATAGA+GGG - chr6_1:93479653-93479672 Msa0898860:three_prime_UTR 40.0%
AACTGGGCATGATAATAGAG+GGG - chr6_1:93479654-93479673 Msa0898860:three_prime_UTR 40.0%
GCATGATAATAGAGGGGTAA+TGG - chr6_1:93479660-93479679 Msa0898860:three_prime_UTR 40.0%
!! AGGGGTAATGGACAAGATTA+AGG - chr6_1:93479672-93479691 Msa0898860:three_prime_UTR 40.0%
!! AGCAGCATTTTGATGAGTAC+CGG + chr6_1:93479707-93479726 None:intergenic 40.0%
AGGAGTTATGGACAAGATCA+AGG - chr6_1:93479795-93479814 Msa0898860:CDS 40.0%
AAGATCAAGGAGAAGATTCC+TGG - chr6_1:93479808-93479827 Msa0898860:CDS 40.0%
ACATGGAAAGAAAGGGATTG+TGG - chr6_1:93480011-93480030 Msa0898860:CDS 40.0%
AGGGATTGTGGACAAGATTA+AGG - chr6_1:93480023-93480042 Msa0898860:CDS 40.0%
AAGATTAAGGAGAAGCTTCC+TGG - chr6_1:93480036-93480055 Msa0898860:CDS 40.0%
GAACTGGGCATGATAATAGA+GGG - chr6_1:93479653-93479672 Msa0898860:three_prime_UTR 40.0%
AACTGGGCATGATAATAGAG+GGG - chr6_1:93479654-93479673 Msa0898860:three_prime_UTR 40.0%
GCATGATAATAGAGGGGTAA+TGG - chr6_1:93479660-93479679 Msa0898860:three_prime_UTR 40.0%
!! AGGGGTAATGGACAAGATTA+AGG - chr6_1:93479672-93479691 Msa0898860:three_prime_UTR 40.0%
!! AGCAGCATTTTGATGAGTAC+CGG + chr6_1:93479707-93479726 None:intergenic 40.0%
AGGAGTTATGGACAAGATCA+AGG - chr6_1:93479795-93479814 Msa0898860:CDS 40.0%
AAGATCAAGGAGAAGATTCC+TGG - chr6_1:93479808-93479827 Msa0898860:CDS 40.0%
ACATGGAAAGAAAGGGATTG+TGG - chr6_1:93480011-93480030 Msa0898860:CDS 40.0%
AGGGATTGTGGACAAGATTA+AGG - chr6_1:93480023-93480042 Msa0898860:CDS 40.0%
AAGATTAAGGAGAAGCTTCC+TGG - chr6_1:93480036-93480055 Msa0898860:CDS 40.0%
CAACAAGGTTATGGAGCTAC+CGG - chr6_1:93479625-93479644 Msa0898860:three_prime_UTR 45.0%
GGAACTGGGCATGATAATAG+AGG - chr6_1:93479652-93479671 Msa0898860:three_prime_UTR 45.0%
!! GCAGCATTTTGATGAGTACC+GGG + chr6_1:93479706-93479725 None:intergenic 45.0%
CTGCTAGTACTTATGGGACA+GGG - chr6_1:93479722-93479741 Msa0898860:exon 45.0%
!! GGTGTTGGTCATCAACAACA+TGG - chr6_1:93479763-93479782 Msa0898860:CDS 45.0%
AAGGAGAAGATTCCTGGAAC+TGG - chr6_1:93479814-93479833 Msa0898860:CDS 45.0%
AAGATTCCTGGAACTGGAAC+TGG - chr6_1:93479820-93479839 Msa0898860:CDS 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_1:93479847-93479866 Msa0898860:intron 45.0%
GGTCATGGTCATCAACAACA+TGG - chr6_1:93479883-93479902 Msa0898860:intron 45.0%
ACATGGAAAGAAAGGGGTTG+TGG - chr6_1:93479900-93479919 Msa0898860:intron 45.0%
AGGGGTTGTGGACAAGATTA+AGG - chr6_1:93479912-93479931 Msa0898860:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_1:93479847-93479866 Msa0898860:intron 45.0%
CATGGAACAACTGGTTATGG+TGG - chr6_1:93479850-93479869 Msa0898860:intron 45.0%
! ACAACTGGTTATGGTGGTGT+TGG - chr6_1:93479973-93479992 Msa0898860:CDS 45.0%
GGTCATGGTCATCAACAACA+TGG - chr6_1:93479883-93479902 Msa0898860:intron 45.0%
CAACAAGGTTATGGAGCTAC+CGG - chr6_1:93479625-93479644 Msa0898860:three_prime_UTR 45.0%
GGAACTGGGCATGATAATAG+AGG - chr6_1:93479652-93479671 Msa0898860:three_prime_UTR 45.0%
!! GCAGCATTTTGATGAGTACC+GGG + chr6_1:93479706-93479725 None:intergenic 45.0%
CTGCTAGTACTTATGGGACA+GGG - chr6_1:93479722-93479741 Msa0898860:exon 45.0%
!! GGTGTTGGTCATCAACAACA+TGG - chr6_1:93479763-93479782 Msa0898860:CDS 45.0%
AAGGAGAAGATTCCTGGAAC+TGG - chr6_1:93479814-93479833 Msa0898860:CDS 45.0%
AAGATTCCTGGAACTGGAAC+TGG - chr6_1:93479820-93479839 Msa0898860:CDS 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_1:93479847-93479866 Msa0898860:intron 45.0%
GGTCATGGTCATCAACAACA+TGG - chr6_1:93479883-93479902 Msa0898860:intron 45.0%
ACATGGAAAGAAAGGGGTTG+TGG - chr6_1:93479900-93479919 Msa0898860:intron 45.0%
AGGGGTTGTGGACAAGATTA+AGG - chr6_1:93479912-93479931 Msa0898860:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG - chr6_1:93479847-93479866 Msa0898860:intron 45.0%
CATGGAACAACTGGTTATGG+TGG - chr6_1:93479850-93479869 Msa0898860:intron 45.0%
! ACAACTGGTTATGGTGGTGT+TGG - chr6_1:93479973-93479992 Msa0898860:CDS 45.0%
GGTCATGGTCATCAACAACA+TGG - chr6_1:93479883-93479902 Msa0898860:intron 45.0%
GCTGCTAGTACTTATGGGAC+AGG - chr6_1:93479721-93479740 Msa0898860:exon 50.0%
AGTACTTATGGGACAGGGAC+AGG - chr6_1:93479727-93479746 Msa0898860:exon 50.0%
GGACATGGAACAACTGGTGT+TGG - chr6_1:93479748-93479767 Msa0898860:CDS 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_1:93479832-93479851 Msa0898860:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_1:93479841-93479860 Msa0898860:intron 50.0%
GGAACAACTGGTTATGGTGC+TGG - chr6_1:93479853-93479872 Msa0898860:intron 50.0%
! ACAACTGGTTATGGTGCTGG+TGG - chr6_1:93479856-93479875 Msa0898860:intron 50.0%
AAGGAGAAGATTCCTGGCAC+TGG - chr6_1:93479931-93479950 Msa0898860:intron 50.0%
! AAGATTCCTGGCACTGGAAC+TGG - chr6_1:93479937-93479956 Msa0898860:intron 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_1:93479832-93479851 Msa0898860:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_1:93479841-93479860 Msa0898860:intron 50.0%
!! GGTTATGGTGGTGTTGGTCA+TGG - chr6_1:93479979-93479998 Msa0898860:CDS 50.0%
AAGGAGAAGCTTCCTGGACA+TGG - chr6_1:93480042-93480061 Msa0898860:CDS 50.0%
AAGCTTCCTGGACATGGACA+AGG - chr6_1:93480048-93480067 Msa0898860:CDS 50.0%
TAGTGTCCTTGTCCATGTCC+AGG + chr6_1:93480057-93480076 None:intergenic 50.0%
GCTGCTAGTACTTATGGGAC+AGG - chr6_1:93479721-93479740 Msa0898860:exon 50.0%
AGTACTTATGGGACAGGGAC+AGG - chr6_1:93479727-93479746 Msa0898860:exon 50.0%
GGACATGGAACAACTGGTGT+TGG - chr6_1:93479748-93479767 Msa0898860:CDS 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_1:93479832-93479851 Msa0898860:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_1:93479841-93479860 Msa0898860:intron 50.0%
GGAACAACTGGTTATGGTGC+TGG - chr6_1:93479853-93479872 Msa0898860:intron 50.0%
! ACAACTGGTTATGGTGCTGG+TGG - chr6_1:93479856-93479875 Msa0898860:intron 50.0%
AAGGAGAAGATTCCTGGCAC+TGG - chr6_1:93479931-93479950 Msa0898860:intron 50.0%
! AAGATTCCTGGCACTGGAAC+TGG - chr6_1:93479937-93479956 Msa0898860:intron 50.0%
ACTGGAACTGGAACAGGTCA+TGG - chr6_1:93479832-93479851 Msa0898860:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG - chr6_1:93479841-93479860 Msa0898860:intron 50.0%
!! GGTTATGGTGGTGTTGGTCA+TGG - chr6_1:93479979-93479998 Msa0898860:CDS 50.0%
AAGGAGAAGCTTCCTGGACA+TGG - chr6_1:93480042-93480061 Msa0898860:CDS 50.0%
AAGCTTCCTGGACATGGACA+AGG - chr6_1:93480048-93480067 Msa0898860:CDS 50.0%
TAGTGTCCTTGTCCATGTCC+AGG + chr6_1:93480057-93480076 None:intergenic 50.0%
CAAGGTTATGGAGCTACCGG+TGG - chr6_1:93479628-93479647 Msa0898860:three_prime_UTR 55.0%
TATGGGACAGGGACAGGACA+TGG - chr6_1:93479733-93479752 Msa0898860:CDS 55.0%
GGGACAGGACATGGAACAAC+TGG - chr6_1:93479742-93479761 Msa0898860:CDS 55.0%
CCTGTTCCAGTTCCAGTTCC+AGG + chr6_1:93479829-93479848 None:intergenic 55.0%
CCTGGAACTGGAACTGGAAC+AGG - chr6_1:93479826-93479845 Msa0898860:intron 55.0%
!! GGTTATGGTGCTGGTGGTGT+TGG - chr6_1:93479862-93479881 Msa0898860:intron 55.0%
CAAGGTTATGGAGCTACCGG+TGG - chr6_1:93479628-93479647 Msa0898860:three_prime_UTR 55.0%
TATGGGACAGGGACAGGACA+TGG - chr6_1:93479733-93479752 Msa0898860:CDS 55.0%
GGGACAGGACATGGAACAAC+TGG - chr6_1:93479742-93479761 Msa0898860:CDS 55.0%
CCTGTTCCAGTTCCAGTTCC+AGG + chr6_1:93479829-93479848 None:intergenic 55.0%
CCTGGAACTGGAACTGGAAC+AGG - chr6_1:93479826-93479845 Msa0898860:intron 55.0%
!! GGTTATGGTGCTGGTGGTGT+TGG - chr6_1:93479862-93479881 Msa0898860:intron 55.0%
GGTTATGGAGCTACCGGTGG+CGG - chr6_1:93479631-93479650 Msa0898860:three_prime_UTR 60.0%
ATCATGCCCAGTTCCGCCAC+CGG + chr6_1:93479647-93479666 None:intergenic 60.0%
!! GGTGCTGGTGGTGTTGGTCA+TGG - chr6_1:93479868-93479887 Msa0898860:intron 60.0%
CCTGTTCCAGTTCCAGTGCC+AGG + chr6_1:93479946-93479965 None:intergenic 60.0%
! CCTGGCACTGGAACTGGAAC+AGG - chr6_1:93479943-93479962 Msa0898860:intron 60.0%
GGTTATGGAGCTACCGGTGG+CGG - chr6_1:93479631-93479650 Msa0898860:three_prime_UTR 60.0%
ATCATGCCCAGTTCCGCCAC+CGG + chr6_1:93479647-93479666 None:intergenic 60.0%
!! GGTGCTGGTGGTGTTGGTCA+TGG - chr6_1:93479868-93479887 Msa0898860:intron 60.0%
CCTGTTCCAGTTCCAGTGCC+AGG + chr6_1:93479946-93479965 None:intergenic 60.0%
! CCTGGCACTGGAACTGGAAC+AGG - chr6_1:93479943-93479962 Msa0898860:intron 60.0%
!! GAGCTACCGGTGGCGGAACT+GGG - chr6_1:93479638-93479657 Msa0898860:three_prime_UTR 65.0%
!! GAGCTACCGGTGGCGGAACT+GGG - chr6_1:93479638-93479657 Msa0898860:three_prime_UTR 65.0%
!! GGAGCTACCGGTGGCGGAAC+TGG - chr6_1:93479637-93479656 Msa0898860:three_prime_UTR 70.0%
!! GGAGCTACCGGTGGCGGAAC+TGG - chr6_1:93479637-93479656 Msa0898860:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 93479502 93480304 93479502 ID=Msa0898860;Name=Msa0898860
chr6_1 mRNA 93479502 93480304 93479502 ID=Msa0898860-mRNA-1;Parent=Msa0898860;Name=Msa0898860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=111|1|1|1|0|0|2|227|115
chr6_1 exon 93479502 93479841 93479502 ID=Msa0898860-mRNA-1:exon:15862;Parent=Msa0898860-mRNA-1
chr6_1 exon 93479959 93480304 93479959 ID=Msa0898860-mRNA-1:exon:15861;Parent=Msa0898860-mRNA-1
chr6_1 five_prime_UTR 93480194 93480304 93480194 ID=Msa0898860-mRNA-1:five_prime_utr;Parent=Msa0898860-mRNA-1
chr6_1 CDS 93479959 93480193 93479959 ID=Msa0898860-mRNA-1:cds;Parent=Msa0898860-mRNA-1
chr6_1 CDS 93479729 93479841 93479729 ID=Msa0898860-mRNA-1:cds;Parent=Msa0898860-mRNA-1
chr6_1 three_prime_UTR 93479502 93479728 93479502 ID=Msa0898860-mRNA-1:three_prime_utr;Parent=Msa0898860-mRNA-1
Gene Sequence

>Msa0898860

ATGTCTCAATATCAACAAGGTTATGGAGCTACCGGTGGCGGAACTGGGCATGATAATAGAGGGGTAATGGACAAGATTAAGGCGAAAATTCCCGGTACTCATCAAAATGCTGCTAGTACTTATGGGACAGGGACAGGACATGGAACAACTGGTGTTGGTCATCAACAACATGGAGATAATAGAGGAGTTATGGACAAGATCAAGGAGAAGATTCCTGGAACTGGAACTGGAACAGGTCATGGAACAACTGGTTATGGTGGTGTTGGTCATGGTCATCAACAACATGGAAAGAAAGGGATTGTGGACAAGATTAAGGAGAAGCTTCCTGGACATGGACAAGGACACTAA
Protein sequence

>Msa0898860

MSQYQQGYGATGGGTGHDNRGVMDKIKAKIPGTHQNAASTYGTGTGHGTTGVGHQQHGDNRGVMDKIKEKIPGTGTGTGHGTTGYGGVGHGHQQHGKKGIVDKIKEKLPGHGQGH*