AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0928030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928030 MtrunA17_Chr6g0484671 72.477 109 17 3 17 113 144 251 4.22e-25 96.3
Msa0928030 MtrunA17_Chr6g0484671 59.375 128 21 6 18 115 186 312 1.77e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGCTGCTAGTACTTA+TGG 0.182311 6_2:+72784772 Msa0928030:CDS
AAAATATGTATGTTGTATTA+AGG 0.273872 6_2:+72785304 Msa0928030:three_prime_UTR
GGAGCTACCGGTGGCGGAAC+TGG 0.275507 6_2:+72784694 Msa0928030:CDS
AGGGATTGTGGACAAGATTA+AGG 0.287150 6_2:+72785080 Msa0928030:CDS
AAGATTAAGGAGAAGCTTCC+TGG 0.308792 6_2:+72785093 Msa0928030:CDS
ATATTTATTCTACTGATTGA+TGG 0.331381 6_2:-72785159 None:intergenic
ACACTAGACCATAATATATA+TGG 0.339964 6_2:+72785128 Msa0928030:exon
TCTAGTGTCCATATATATTA+TGG 0.347186 6_2:-72785136 None:intergenic
CCTGTTCCAGTTCCAGTTCC+AGG 0.353061 6_2:-72784883 None:intergenic
AAGATTCCTGGAACTGGAAC+TGG 0.359093 6_2:+72784877 Msa0928030:CDS
TCTCAATATCAACAAGGTTA+TGG 0.374924 6_2:+72784673 Msa0928030:CDS
AGGGGTAATGGACAAGATTA+AGG 0.379804 6_2:+72784729 Msa0928030:CDS
AAGATCAAGGAGAAGATTCC+TGG 0.387597 6_2:+72784865 Msa0928030:CDS
CCTGGAACTGGAACTGGAAC+AGG 0.387624 6_2:+72784883 Msa0928030:CDS
AAGATTAAGGCGAAAATTCC+CGG 0.410456 6_2:+72784742 Msa0928030:CDS
AAAATGCTGCTAGTACTTAT+GGG 0.425979 6_2:+72784773 Msa0928030:CDS
AAGGAGAAGATTCCTGGAAC+TGG 0.429498 6_2:+72784871 Msa0928030:CDS
TGGAGATAATAGAGGAGTTA+TGG 0.444393 6_2:+72784840 Msa0928030:CDS
ATTAAGGAATTGATATATGT+TGG 0.448768 6_2:+72785320 Msa0928030:three_prime_UTR
CATCAACAACATGGAAAGAA+AGG 0.456958 6_2:+72785060 Msa0928030:CDS
GGAACAGGTCATGGAACAAC+TGG 0.460620 6_2:+72785015 Msa0928030:intron
GGGACAGGACATGGAACAAC+TGG 0.471797 6_2:+72784799 Msa0928030:CDS
GGTCATGGAACAACTGGTTA+TGG 0.473670 6_2:+72785021 Msa0928030:intron
GAGCTACCGGTGGCGGAACT+GGG 0.485254 6_2:+72784695 Msa0928030:CDS
GCATGATAATAGAGGGGTAA+TGG 0.494411 6_2:+72784717 Msa0928030:CDS
AGGAGTTATGGACAAGATCA+AGG 0.502550 6_2:+72784852 Msa0928030:CDS
TAGTGTCCTTGTCCATGTCC+AGG 0.504026 6_2:-72785111 None:intergenic
ATATATGAGGGGTATAATGA+TGG 0.505245 6_2:+72785266 Msa0928030:three_prime_UTR
AGTACTTATGGGACAGGGAC+AGG 0.509114 6_2:+72784784 Msa0928030:CDS
GCTGCTAGTACTTATGGGAC+AGG 0.515021 6_2:+72784778 Msa0928030:CDS
TAGAATAAATATGTGTGTAT+TGG 0.515610 6_2:+72785170 Msa0928030:three_prime_UTR
GGTTATGGAGCTACCGGTGG+CGG 0.520450 6_2:+72784688 Msa0928030:CDS
GGAACTGGGCATGATAATAG+AGG 0.529404 6_2:+72784709 Msa0928030:CDS
CAACAAGGTTATGGAGCTAC+CGG 0.539969 6_2:+72784682 Msa0928030:CDS
TCATGTAAGAGATATATATG+AGG 0.540270 6_2:+72785253 Msa0928030:three_prime_UTR
GGTTATGGTGGTGTTGGTCA+TGG 0.545868 6_2:+72785036 Msa0928030:CDS
ATCAACAACATGGAAAGAAA+GGG 0.547780 6_2:+72785061 Msa0928030:CDS
CAACAACATGGAGATAATAG+AGG 0.548264 6_2:+72784832 Msa0928030:CDS
ATCATGCCCAGTTCCGCCAC+CGG 0.554198 6_2:-72784701 None:intergenic
CATGTAAGAGATATATATGA+GGG 0.562194 6_2:+72785254 Msa0928030:three_prime_UTR
AAGGAGAAGCTTCCTGGACA+TGG 0.566266 6_2:+72785099 Msa0928030:CDS
TATGGGACAGGGACAGGACA+TGG 0.569049 6_2:+72784790 Msa0928030:CDS
TATATGAGGGGTATAATGAT+GGG 0.576628 6_2:+72785267 Msa0928030:three_prime_UTR
ACATGGAAAGAAAGGGATTG+TGG 0.578076 6_2:+72785068 Msa0928030:CDS
TATATATCTCTTACATGAGG+TGG 0.578862 6_2:-72785248 None:intergenic
GGACATGGAACAACTGGTGT+TGG 0.586251 6_2:+72784805 Msa0928030:CDS
ACAACTGGTTATGGTGGTGT+TGG 0.599005 6_2:+72785030 Msa0928030:CDS
AAGCTTCCTGGACATGGACA+AGG 0.605612 6_2:+72785105 Msa0928030:CDS
GAACTGGGCATGATAATAGA+GGG 0.607970 6_2:+72784710 Msa0928030:CDS
TCATATATATCTCTTACATG+AGG 0.647110 6_2:-72785251 None:intergenic
CTGCTAGTACTTATGGGACA+GGG 0.654209 6_2:+72784779 Msa0928030:CDS
CAAGGTTATGGAGCTACCGG+TGG 0.670970 6_2:+72784685 Msa0928030:CDS
GGTGTTGGTCATCAACAACA+TGG 0.679464 6_2:+72784820 Msa0928030:CDS
GGTCATGGTCATCAACAACA+TGG 0.689366 6_2:+72785051 Msa0928030:CDS
AACTGGGCATGATAATAGAG+GGG 0.696526 6_2:+72784711 Msa0928030:CDS
CATGGAACAACTGGTTATGG+TGG 0.707484 6_2:+72785024 Msa0928030:CDS
ACAATGTCTCAATATCAACA+AGG 0.721195 6_2:+72784667 Msa0928030:exon
ATGTAAGAGATATATATGAG+GGG 0.727389 6_2:+72785255 Msa0928030:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATGTATGTTGTATTA+AGG + chr6_2:72785304-72785323 Msa0928030:three_prime_UTR 15.0%
!! AAAATATGTATGTTGTATTA+AGG + chr6_2:72785304-72785323 Msa0928030:three_prime_UTR 15.0%
!!! ATATTTATTCTACTGATTGA+TGG - chr6_2:72785162-72785181 None:intergenic 20.0%
!! TAGAATAAATATGTGTGTAT+TGG + chr6_2:72785170-72785189 Msa0928030:three_prime_UTR 20.0%
!! ATTAAGGAATTGATATATGT+TGG + chr6_2:72785320-72785339 Msa0928030:three_prime_UTR 20.0%
!!! ATATTTATTCTACTGATTGA+TGG - chr6_2:72785162-72785181 None:intergenic 20.0%
!! TAGAATAAATATGTGTGTAT+TGG + chr6_2:72785170-72785189 Msa0928030:three_prime_UTR 20.0%
!! ATTAAGGAATTGATATATGT+TGG + chr6_2:72785320-72785339 Msa0928030:three_prime_UTR 20.0%
!!! TTTTGTTTTCTTGGTTTCTA+AGG - chr6_2:72784609-72784628 None:intergenic 25.0%
! ACACTAGACCATAATATATA+TGG + chr6_2:72785128-72785147 Msa0928030:exon 25.0%
! TCTAGTGTCCATATATATTA+TGG - chr6_2:72785139-72785158 None:intergenic 25.0%
! TCATATATATCTCTTACATG+AGG - chr6_2:72785254-72785273 None:intergenic 25.0%
! TCATGTAAGAGATATATATG+AGG + chr6_2:72785253-72785272 Msa0928030:three_prime_UTR 25.0%
! CATGTAAGAGATATATATGA+GGG + chr6_2:72785254-72785273 Msa0928030:three_prime_UTR 25.0%
! ATGTAAGAGATATATATGAG+GGG + chr6_2:72785255-72785274 Msa0928030:three_prime_UTR 25.0%
!!! TTTTGTTTTCTTGGTTTCTA+AGG - chr6_2:72784609-72784628 None:intergenic 25.0%
! ACACTAGACCATAATATATA+TGG + chr6_2:72785128-72785147 Msa0928030:exon 25.0%
! TCTAGTGTCCATATATATTA+TGG - chr6_2:72785139-72785158 None:intergenic 25.0%
! TCATATATATCTCTTACATG+AGG - chr6_2:72785254-72785273 None:intergenic 25.0%
! TCATGTAAGAGATATATATG+AGG + chr6_2:72785253-72785272 Msa0928030:three_prime_UTR 25.0%
! CATGTAAGAGATATATATGA+GGG + chr6_2:72785254-72785273 Msa0928030:three_prime_UTR 25.0%
! ATGTAAGAGATATATATGAG+GGG + chr6_2:72785255-72785274 Msa0928030:three_prime_UTR 25.0%
!!! AACGTGAAGTTTTGTTTTCT+TGG - chr6_2:72784618-72784637 None:intergenic 30.0%
ACAATGTCTCAATATCAACA+AGG + chr6_2:72784667-72784686 Msa0928030:exon 30.0%
TCTCAATATCAACAAGGTTA+TGG + chr6_2:72784673-72784692 Msa0928030:CDS 30.0%
AAAATGCTGCTAGTACTTAT+GGG + chr6_2:72784773-72784792 Msa0928030:CDS 30.0%
ATCAACAACATGGAAAGAAA+GGG + chr6_2:72784944-72784963 Msa0928030:intron 30.0%
ATCAACAACATGGAAAGAAA+GGG + chr6_2:72784944-72784963 Msa0928030:intron 30.0%
TATATATCTCTTACATGAGG+TGG - chr6_2:72785251-72785270 None:intergenic 30.0%
! ATATATGAGGGGTATAATGA+TGG + chr6_2:72785266-72785285 Msa0928030:three_prime_UTR 30.0%
! TATATGAGGGGTATAATGAT+GGG + chr6_2:72785267-72785286 Msa0928030:three_prime_UTR 30.0%
!!! AACGTGAAGTTTTGTTTTCT+TGG - chr6_2:72784618-72784637 None:intergenic 30.0%
ACAATGTCTCAATATCAACA+AGG + chr6_2:72784667-72784686 Msa0928030:exon 30.0%
TCTCAATATCAACAAGGTTA+TGG + chr6_2:72784673-72784692 Msa0928030:CDS 30.0%
AAAATGCTGCTAGTACTTAT+GGG + chr6_2:72784773-72784792 Msa0928030:CDS 30.0%
ATCAACAACATGGAAAGAAA+GGG + chr6_2:72784944-72784963 Msa0928030:intron 30.0%
ATCAACAACATGGAAAGAAA+GGG + chr6_2:72784944-72784963 Msa0928030:intron 30.0%
TATATATCTCTTACATGAGG+TGG - chr6_2:72785251-72785270 None:intergenic 30.0%
! ATATATGAGGGGTATAATGA+TGG + chr6_2:72785266-72785285 Msa0928030:three_prime_UTR 30.0%
! TATATGAGGGGTATAATGAT+GGG + chr6_2:72785267-72785286 Msa0928030:three_prime_UTR 30.0%
AAGATTAAGGCGAAAATTCC+CGG + chr6_2:72784742-72784761 Msa0928030:CDS 35.0%
CAAAATGCTGCTAGTACTTA+TGG + chr6_2:72784772-72784791 Msa0928030:CDS 35.0%
CAACAACATGGAGATAATAG+AGG + chr6_2:72784832-72784851 Msa0928030:CDS 35.0%
TGGAGATAATAGAGGAGTTA+TGG + chr6_2:72784840-72784859 Msa0928030:CDS 35.0%
CATCAACAACATGGAAAGAA+AGG + chr6_2:72784943-72784962 Msa0928030:intron 35.0%
TCAACAACATGGAAAGAAAG+GGG + chr6_2:72784945-72784964 Msa0928030:intron 35.0%
AAGATTAAGGAGAAGATTCC+TGG + chr6_2:72784976-72784995 Msa0928030:intron 35.0%
CATCAACAACATGGAAAGAA+AGG + chr6_2:72784943-72784962 Msa0928030:intron 35.0%
AAGATTAAGGCGAAAATTCC+CGG + chr6_2:72784742-72784761 Msa0928030:CDS 35.0%
CAAAATGCTGCTAGTACTTA+TGG + chr6_2:72784772-72784791 Msa0928030:CDS 35.0%
CAACAACATGGAGATAATAG+AGG + chr6_2:72784832-72784851 Msa0928030:CDS 35.0%
TGGAGATAATAGAGGAGTTA+TGG + chr6_2:72784840-72784859 Msa0928030:CDS 35.0%
CATCAACAACATGGAAAGAA+AGG + chr6_2:72784943-72784962 Msa0928030:intron 35.0%
TCAACAACATGGAAAGAAAG+GGG + chr6_2:72784945-72784964 Msa0928030:intron 35.0%
AAGATTAAGGAGAAGATTCC+TGG + chr6_2:72784976-72784995 Msa0928030:intron 35.0%
CATCAACAACATGGAAAGAA+AGG + chr6_2:72784943-72784962 Msa0928030:intron 35.0%
GAACTGGGCATGATAATAGA+GGG + chr6_2:72784710-72784729 Msa0928030:CDS 40.0%
AACTGGGCATGATAATAGAG+GGG + chr6_2:72784711-72784730 Msa0928030:CDS 40.0%
GCATGATAATAGAGGGGTAA+TGG + chr6_2:72784717-72784736 Msa0928030:CDS 40.0%
!! AGGGGTAATGGACAAGATTA+AGG + chr6_2:72784729-72784748 Msa0928030:CDS 40.0%
!! AGCAGCATTTTGATGAGTAC+CGG - chr6_2:72784764-72784783 None:intergenic 40.0%
AGGAGTTATGGACAAGATCA+AGG + chr6_2:72784852-72784871 Msa0928030:CDS 40.0%
AAGATCAAGGAGAAGATTCC+TGG + chr6_2:72784865-72784884 Msa0928030:CDS 40.0%
ACATGGAAAGAAAGGGATTG+TGG + chr6_2:72785068-72785087 Msa0928030:CDS 40.0%
AGGGATTGTGGACAAGATTA+AGG + chr6_2:72785080-72785099 Msa0928030:CDS 40.0%
AAGATTAAGGAGAAGCTTCC+TGG + chr6_2:72785093-72785112 Msa0928030:CDS 40.0%
GAACTGGGCATGATAATAGA+GGG + chr6_2:72784710-72784729 Msa0928030:CDS 40.0%
AACTGGGCATGATAATAGAG+GGG + chr6_2:72784711-72784730 Msa0928030:CDS 40.0%
GCATGATAATAGAGGGGTAA+TGG + chr6_2:72784717-72784736 Msa0928030:CDS 40.0%
!! AGGGGTAATGGACAAGATTA+AGG + chr6_2:72784729-72784748 Msa0928030:CDS 40.0%
!! AGCAGCATTTTGATGAGTAC+CGG - chr6_2:72784764-72784783 None:intergenic 40.0%
AGGAGTTATGGACAAGATCA+AGG + chr6_2:72784852-72784871 Msa0928030:CDS 40.0%
AAGATCAAGGAGAAGATTCC+TGG + chr6_2:72784865-72784884 Msa0928030:CDS 40.0%
ACATGGAAAGAAAGGGATTG+TGG + chr6_2:72785068-72785087 Msa0928030:CDS 40.0%
AGGGATTGTGGACAAGATTA+AGG + chr6_2:72785080-72785099 Msa0928030:CDS 40.0%
AAGATTAAGGAGAAGCTTCC+TGG + chr6_2:72785093-72785112 Msa0928030:CDS 40.0%
CAACAAGGTTATGGAGCTAC+CGG + chr6_2:72784682-72784701 Msa0928030:CDS 45.0%
GGAACTGGGCATGATAATAG+AGG + chr6_2:72784709-72784728 Msa0928030:CDS 45.0%
!! GCAGCATTTTGATGAGTACC+GGG - chr6_2:72784763-72784782 None:intergenic 45.0%
CTGCTAGTACTTATGGGACA+GGG + chr6_2:72784779-72784798 Msa0928030:CDS 45.0%
!! GGTGTTGGTCATCAACAACA+TGG + chr6_2:72784820-72784839 Msa0928030:CDS 45.0%
AAGGAGAAGATTCCTGGAAC+TGG + chr6_2:72784871-72784890 Msa0928030:CDS 45.0%
AAGATTCCTGGAACTGGAAC+TGG + chr6_2:72784877-72784896 Msa0928030:CDS 45.0%
GGTCATGGAACAACTGGTTA+TGG + chr6_2:72784904-72784923 Msa0928030:intron 45.0%
GGTCATGGTCATCAACAACA+TGG + chr6_2:72784934-72784953 Msa0928030:intron 45.0%
ACATGGAAAGAAAGGGGTTG+TGG + chr6_2:72784951-72784970 Msa0928030:intron 45.0%
AGGGGTTGTGGACAAGATTA+AGG + chr6_2:72784963-72784982 Msa0928030:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG + chr6_2:72784904-72784923 Msa0928030:intron 45.0%
CATGGAACAACTGGTTATGG+TGG + chr6_2:72784907-72784926 Msa0928030:intron 45.0%
! ACAACTGGTTATGGTGGTGT+TGG + chr6_2:72785030-72785049 Msa0928030:CDS 45.0%
GGTCATGGTCATCAACAACA+TGG + chr6_2:72784934-72784953 Msa0928030:intron 45.0%
CAACAAGGTTATGGAGCTAC+CGG + chr6_2:72784682-72784701 Msa0928030:CDS 45.0%
GGAACTGGGCATGATAATAG+AGG + chr6_2:72784709-72784728 Msa0928030:CDS 45.0%
!! GCAGCATTTTGATGAGTACC+GGG - chr6_2:72784763-72784782 None:intergenic 45.0%
CTGCTAGTACTTATGGGACA+GGG + chr6_2:72784779-72784798 Msa0928030:CDS 45.0%
!! GGTGTTGGTCATCAACAACA+TGG + chr6_2:72784820-72784839 Msa0928030:CDS 45.0%
AAGGAGAAGATTCCTGGAAC+TGG + chr6_2:72784871-72784890 Msa0928030:CDS 45.0%
AAGATTCCTGGAACTGGAAC+TGG + chr6_2:72784877-72784896 Msa0928030:CDS 45.0%
GGTCATGGAACAACTGGTTA+TGG + chr6_2:72784904-72784923 Msa0928030:intron 45.0%
GGTCATGGTCATCAACAACA+TGG + chr6_2:72784934-72784953 Msa0928030:intron 45.0%
ACATGGAAAGAAAGGGGTTG+TGG + chr6_2:72784951-72784970 Msa0928030:intron 45.0%
AGGGGTTGTGGACAAGATTA+AGG + chr6_2:72784963-72784982 Msa0928030:intron 45.0%
GGTCATGGAACAACTGGTTA+TGG + chr6_2:72784904-72784923 Msa0928030:intron 45.0%
CATGGAACAACTGGTTATGG+TGG + chr6_2:72784907-72784926 Msa0928030:intron 45.0%
! ACAACTGGTTATGGTGGTGT+TGG + chr6_2:72785030-72785049 Msa0928030:CDS 45.0%
GGTCATGGTCATCAACAACA+TGG + chr6_2:72784934-72784953 Msa0928030:intron 45.0%
GCTGCTAGTACTTATGGGAC+AGG + chr6_2:72784778-72784797 Msa0928030:CDS 50.0%
AGTACTTATGGGACAGGGAC+AGG + chr6_2:72784784-72784803 Msa0928030:CDS 50.0%
GGACATGGAACAACTGGTGT+TGG + chr6_2:72784805-72784824 Msa0928030:CDS 50.0%
ACTGGAACTGGAACAGGTCA+TGG + chr6_2:72784889-72784908 Msa0928030:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG + chr6_2:72784898-72784917 Msa0928030:intron 50.0%
GGAACAACTGGTTATGGTGC+TGG + chr6_2:72784910-72784929 Msa0928030:intron 50.0%
! ACAACTGGTTATGGTGCTGG+TGG + chr6_2:72784913-72784932 Msa0928030:intron 50.0%
AAGGAGAAGATTCCTGGCAC+TGG + chr6_2:72784982-72785001 Msa0928030:intron 50.0%
! AAGATTCCTGGCACTGGAAC+TGG + chr6_2:72784988-72785007 Msa0928030:intron 50.0%
ACTGGAACTGGAACTGGAAC+AGG + chr6_2:72785000-72785019 Msa0928030:intron 50.0%
ACTGGAACTGGAACAGGTCA+TGG + chr6_2:72784889-72784908 Msa0928030:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG + chr6_2:72784898-72784917 Msa0928030:intron 50.0%
!! GGTTATGGTGGTGTTGGTCA+TGG + chr6_2:72785036-72785055 Msa0928030:CDS 50.0%
AAGGAGAAGCTTCCTGGACA+TGG + chr6_2:72785099-72785118 Msa0928030:CDS 50.0%
AAGCTTCCTGGACATGGACA+AGG + chr6_2:72785105-72785124 Msa0928030:CDS 50.0%
TAGTGTCCTTGTCCATGTCC+AGG - chr6_2:72785114-72785133 None:intergenic 50.0%
GCTGCTAGTACTTATGGGAC+AGG + chr6_2:72784778-72784797 Msa0928030:CDS 50.0%
AGTACTTATGGGACAGGGAC+AGG + chr6_2:72784784-72784803 Msa0928030:CDS 50.0%
GGACATGGAACAACTGGTGT+TGG + chr6_2:72784805-72784824 Msa0928030:CDS 50.0%
ACTGGAACTGGAACAGGTCA+TGG + chr6_2:72784889-72784908 Msa0928030:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG + chr6_2:72784898-72784917 Msa0928030:intron 50.0%
GGAACAACTGGTTATGGTGC+TGG + chr6_2:72784910-72784929 Msa0928030:intron 50.0%
! ACAACTGGTTATGGTGCTGG+TGG + chr6_2:72784913-72784932 Msa0928030:intron 50.0%
AAGGAGAAGATTCCTGGCAC+TGG + chr6_2:72784982-72785001 Msa0928030:intron 50.0%
! AAGATTCCTGGCACTGGAAC+TGG + chr6_2:72784988-72785007 Msa0928030:intron 50.0%
ACTGGAACTGGAACTGGAAC+AGG + chr6_2:72785000-72785019 Msa0928030:intron 50.0%
ACTGGAACTGGAACAGGTCA+TGG + chr6_2:72784889-72784908 Msa0928030:intron 50.0%
GGAACAGGTCATGGAACAAC+TGG + chr6_2:72784898-72784917 Msa0928030:intron 50.0%
!! GGTTATGGTGGTGTTGGTCA+TGG + chr6_2:72785036-72785055 Msa0928030:CDS 50.0%
AAGGAGAAGCTTCCTGGACA+TGG + chr6_2:72785099-72785118 Msa0928030:CDS 50.0%
AAGCTTCCTGGACATGGACA+AGG + chr6_2:72785105-72785124 Msa0928030:CDS 50.0%
TAGTGTCCTTGTCCATGTCC+AGG - chr6_2:72785114-72785133 None:intergenic 50.0%
CAAGGTTATGGAGCTACCGG+TGG + chr6_2:72784685-72784704 Msa0928030:CDS 55.0%
TATGGGACAGGGACAGGACA+TGG + chr6_2:72784790-72784809 Msa0928030:CDS 55.0%
GGGACAGGACATGGAACAAC+TGG + chr6_2:72784799-72784818 Msa0928030:CDS 55.0%
CCTGTTCCAGTTCCAGTTCC+AGG - chr6_2:72784886-72784905 None:intergenic 55.0%
CCTGGAACTGGAACTGGAAC+AGG + chr6_2:72784883-72784902 Msa0928030:CDS 55.0%
!! GGTTATGGTGCTGGTGGTCA+TGG + chr6_2:72784919-72784938 Msa0928030:intron 55.0%
CAAGGTTATGGAGCTACCGG+TGG + chr6_2:72784685-72784704 Msa0928030:CDS 55.0%
TATGGGACAGGGACAGGACA+TGG + chr6_2:72784790-72784809 Msa0928030:CDS 55.0%
GGGACAGGACATGGAACAAC+TGG + chr6_2:72784799-72784818 Msa0928030:CDS 55.0%
CCTGTTCCAGTTCCAGTTCC+AGG - chr6_2:72784886-72784905 None:intergenic 55.0%
CCTGGAACTGGAACTGGAAC+AGG + chr6_2:72784883-72784902 Msa0928030:CDS 55.0%
!! GGTTATGGTGCTGGTGGTCA+TGG + chr6_2:72784919-72784938 Msa0928030:intron 55.0%
GGTTATGGAGCTACCGGTGG+CGG + chr6_2:72784688-72784707 Msa0928030:CDS 60.0%
ATCATGCCCAGTTCCGCCAC+CGG - chr6_2:72784704-72784723 None:intergenic 60.0%
CCAGTTCCAGTTCCAGTGCC+AGG - chr6_2:72784997-72785016 None:intergenic 60.0%
! CCTGGCACTGGAACTGGAAC+TGG + chr6_2:72784994-72785013 Msa0928030:intron 60.0%
GGTTATGGAGCTACCGGTGG+CGG + chr6_2:72784688-72784707 Msa0928030:CDS 60.0%
ATCATGCCCAGTTCCGCCAC+CGG - chr6_2:72784704-72784723 None:intergenic 60.0%
CCAGTTCCAGTTCCAGTGCC+AGG - chr6_2:72784997-72785016 None:intergenic 60.0%
! CCTGGCACTGGAACTGGAAC+TGG + chr6_2:72784994-72785013 Msa0928030:intron 60.0%
!! GAGCTACCGGTGGCGGAACT+GGG + chr6_2:72784695-72784714 Msa0928030:CDS 65.0%
!! GAGCTACCGGTGGCGGAACT+GGG + chr6_2:72784695-72784714 Msa0928030:CDS 65.0%
!! GGAGCTACCGGTGGCGGAAC+TGG + chr6_2:72784694-72784713 Msa0928030:CDS 70.0%
!! GGAGCTACCGGTGGCGGAAC+TGG + chr6_2:72784694-72784713 Msa0928030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 72784560 72785353 72784560 ID=Msa0928030;Name=Msa0928030
chr6_2 mRNA 72784560 72785353 72784560 ID=Msa0928030-mRNA-1;Parent=Msa0928030;Name=Msa0928030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=110|1|1|1|0|0|2|219|115
chr6_2 exon 72784560 72784904 72784560 ID=Msa0928030-mRNA-1:exon:12325;Parent=Msa0928030-mRNA-1
chr6_2 exon 72785022 72785353 72785022 ID=Msa0928030-mRNA-1:exon:12326;Parent=Msa0928030-mRNA-1
chr6_2 five_prime_UTR 72784560 72784669 72784560 ID=Msa0928030-mRNA-1:five_prime_utr;Parent=Msa0928030-mRNA-1
chr6_2 CDS 72784670 72784904 72784670 ID=Msa0928030-mRNA-1:cds;Parent=Msa0928030-mRNA-1
chr6_2 CDS 72785022 72785134 72785022 ID=Msa0928030-mRNA-1:cds;Parent=Msa0928030-mRNA-1
chr6_2 three_prime_UTR 72785135 72785353 72785135 ID=Msa0928030-mRNA-1:three_prime_utr;Parent=Msa0928030-mRNA-1
Gene Sequence

>Msa0928030

ATGTCTCAATATCAACAAGGTTATGGAGCTACCGGTGGCGGAACTGGGCATGATAATAGAGGGGTAATGGACAAGATTAAGGCGAAAATTCCCGGTACTCATCAAAATGCTGCTAGTACTTATGGGACAGGGACAGGACATGGAACAACTGGTGTTGGTCATCAACAACATGGAGATAATAGAGGAGTTATGGACAAGATCAAGGAGAAGATTCCTGGAACTGGAACTGGAACAGGTCATGGAACAACTGGTTATGGTGGTGTTGGTCATGGTCATCAACAACATGGAAAGAAAGGGATTGTGGACAAGATTAAGGAGAAGCTTCCTGGACATGGACAAGGACACTAG
Protein sequence

>Msa0928030

MSQYQQGYGATGGGTGHDNRGVMDKIKAKIPGTHQNAASTYGTGTGHGTTGVGHQQHGDNRGVMDKIKEKIPGTGTGTGHGTTGYGGVGHGHQQHGKKGIVDKIKEKLPGHGQGH*