AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131670 MtrunA17_Chr8g0347851 93.350 406 20 1 1 406 1 399 0.0 781
Msa1131670 MtrunA17_Chr8g0347881 75.787 413 84 7 1 406 1 404 0.0 636
Msa1131670 MtrunA17_Chr7g0220421 28.877 374 216 19 21 378 74 413 7.69e-24 102
Msa1131670 MtrunA17_Chr3g0122401 23.797 374 239 12 44 402 119 461 1.43e-17 84.3
Msa1131670 MtrunA17_Chr1g0150561 24.444 405 239 21 44 405 22 402 1.95e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131670 AT3G61590.1 59.242 422 145 9 1 406 1 411 7.20e-172 487
Msa1131670 AT3G61590.2 59.242 422 145 9 1 406 9 419 1.14e-171 486
Msa1131670 AT3G61590.3 59.242 422 145 9 1 406 9 419 1.14e-171 486
Msa1131670 AT3G61590.4 59.242 422 145 9 1 406 37 447 2.08e-171 487
Msa1131670 AT5G15710.1 26.420 405 237 21 21 405 83 446 6.76e-20 91.7
Msa1131670 AT5G15710.2 26.420 405 237 21 21 405 83 446 6.76e-20 91.7
Msa1131670 AT1G27340.1 25.266 376 228 16 44 400 120 461 5.15e-19 89.0

Find 98 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCAAAGGAATCGGTATC+TGG 0.262116 7_3:+84213001 Msa1131670:CDS
GGAGACTGAGGACTTTGATT+TGG 0.316201 7_3:+84212120 Msa1131670:CDS
CCTTCATCGGAACTTCTAAT+TGG 0.318885 7_3:+84212422 Msa1131670:CDS
AACAAATACTTCCAAGGCTT+TGG 0.322963 7_3:+84213066 Msa1131670:CDS
TGGTTCATTTCTTCATCATA+TGG 0.339035 7_3:+84212442 Msa1131670:CDS
ATATGGCTTAGTTTGCTTCA+TGG 0.341038 7_3:+84212459 Msa1131670:CDS
TACTTTGTAGTTTACTATAC+CGG 0.358898 7_3:+84212802 Msa1131670:CDS
TTGATTATGCCCGGTCGATC+AGG 0.362415 7_3:-84212985 None:intergenic
TTAATATATATTCAAAGTTA+TGG 0.370758 7_3:+84213129 Msa1131670:CDS
AAGCCTTGGAAGTATTTGTT+AGG 0.394329 7_3:-84213063 None:intergenic
CAATACCATTTCCGAAGGTT+AGG 0.405402 7_3:-84212388 None:intergenic
AATGCTTACAATGGGAAGAT+AGG 0.407712 7_3:-84212227 None:intergenic
CTTGTAATGGTTGGAGGAAT+CGG 0.417078 7_3:+84212958 Msa1131670:CDS
AGAGGAAACCTCTTTGTTAC+CGG 0.417347 7_3:-84213213 None:intergenic
GGAAGTATTTGTTAGGCATT+CGG 0.420912 7_3:-84213056 None:intergenic
ACCCTATTACTAAAAGTTGC+TGG 0.421242 7_3:+84212536 Msa1131670:CDS
GGACAATGGCAGCAGCTTCA+TGG 0.426643 7_3:+84212480 Msa1131670:CDS
CCCGGGATGAATTCTGATTA+CGG 0.437688 7_3:+84212574 Msa1131670:CDS
GCTTCTCCTTCATATTCATT+AGG 0.443041 7_3:-84212936 None:intergenic
TGAACATTAAACAATGGAAA+TGG 0.444602 7_3:+84213178 Msa1131670:CDS
GAGGACTTTGATTTGGAACT+TGG 0.446641 7_3:+84212127 Msa1131670:CDS
ATGATCCTAACCTTCGGAAA+TGG 0.454774 7_3:+84212383 Msa1131670:CDS
TCAAGCTAGCTTGAGAAAAT+CGG 0.464567 7_3:-84212876 None:intergenic
AAGGAGAAGCTTGTAATGGT+TGG 0.468022 7_3:+84212949 Msa1131670:CDS
CTCCTTCATATTCATTAGGC+GGG 0.474054 7_3:-84212932 None:intergenic
TCTGGGTTCTTCATGATAAG+AGG 0.474177 7_3:+84213019 Msa1131670:CDS
ATGTCAAATGTGAGAAGTGC+AGG 0.480011 7_3:-84213156 None:intergenic
ATACGCTCCAATAAATCATC+AGG 0.482881 7_3:-84212199 None:intergenic
ACTTTGTAGTTTACTATACC+GGG 0.489699 7_3:+84212803 Msa1131670:CDS
AATCGGCAAACCTGATCGAC+CGG 0.501161 7_3:+84212975 Msa1131670:CDS
CATCAAACTCTCCAAAGCCT+TGG 0.502165 7_3:-84213077 None:intergenic
TGCATTGATCTCCCCTTCAT+CGG 0.507773 7_3:+84212409 Msa1131670:CDS
CCCGTCAAAACCTCGGTTAG+CGG 0.508699 7_3:-84212736 None:intergenic
ACTTTCGACTCTATTATGGC+TGG 0.510570 7_3:+84212052 None:intergenic
GCTCGGAAAATGCTTACAAT+GGG 0.512182 7_3:-84212235 None:intergenic
TGATGATGACGTCATGCAAA+AGG 0.512410 7_3:+84212099 Msa1131670:CDS
GCATGACGTCATCATCATAG+TGG 0.512718 7_3:-84212093 None:intergenic
GGATGCTTCAAAAGCCTCCC+GGG 0.512854 7_3:+84212557 Msa1131670:CDS
TGCTCGGAAAATGCTTACAA+TGG 0.513891 7_3:-84212236 None:intergenic
CAAGCTGCGTGTGTAAAAGA+TGG 0.518066 7_3:+84212257 Msa1131670:CDS
ACCAGCTCTGATGAACCATC+TGG 0.518571 7_3:+84212352 Msa1131670:CDS
TGGATGCTTCAAAAGCCTCC+CGG 0.520079 7_3:+84212556 Msa1131670:CDS
CTTTGATTTGGAACTTGGTG+AGG 0.521579 7_3:+84212132 Msa1131670:CDS
GAAATGGTCACATAAATGTC+CGG 0.524074 7_3:+84213194 Msa1131670:CDS
ACCAGATGGTTCATCAGAGC+TGG 0.524405 7_3:-84212353 None:intergenic
ATGCTTATGATCCTAACCTT+CGG 0.527055 7_3:+84212377 Msa1131670:CDS
AATCAAAGGAATCGGTATCT+GGG 0.529604 7_3:+84213002 Msa1131670:CDS
CAATTCGAAGGAGGAGGCAT+GGG 0.529743 7_3:+84212708 Msa1131670:CDS
CCAATTAGAAGTTCCGATGA+AGG 0.532890 7_3:-84212422 None:intergenic
CGCCCGCCTAATGAATATGA+AGG 0.533578 7_3:+84212930 Msa1131670:CDS
CCGATTCCTTTGATTATGCC+CGG 0.535424 7_3:-84212994 None:intergenic
TATGGAGCAATTTCAAGTCT+CGG 0.538101 7_3:-84213264 None:intergenic
CGGGCGCATGTCAGAGAACA+TGG 0.542463 7_3:-84212913 None:intergenic
GAGAAGCTTGTAATGGTTGG+AGG 0.543004 7_3:+84212952 Msa1131670:CDS
TCTCCTTCATATTCATTAGG+CGG 0.544723 7_3:-84212933 None:intergenic
CCGGGCATAATCAAAGGAAT+CGG 0.544910 7_3:+84212994 Msa1131670:CDS
GTGAAATCAAAGCAAGTCCC+TGG 0.546583 7_3:+84212649 Msa1131670:CDS
ATTTGCTACCTCAGAAACCT+TGG 0.551644 7_3:+84212317 Msa1131670:CDS
ATAAAATACCAAGGTTTCTG+AGG 0.554768 7_3:-84212325 None:intergenic
CAATTAGAAGTTCCGATGAA+GGG 0.559961 7_3:-84212421 None:intergenic
GGATCATAAGCATGACCAGA+TGG 0.560016 7_3:-84212367 None:intergenic
TTCTGAGGTAGCAAATGTGA+AGG 0.561368 7_3:-84212310 None:intergenic
CCGTAATCAGAATTCATCCC+GGG 0.563480 7_3:-84212574 None:intergenic
GATCGACCGGGCATAATCAA+AGG 0.567118 7_3:+84212988 Msa1131670:CDS
TGTATACAATTCGAAGGAGG+AGG 0.575653 7_3:+84212702 Msa1131670:CDS
ACAATTCGAAGGAGGAGGCA+TGG 0.576395 7_3:+84212707 Msa1131670:CDS
TTGACATGAACATTAAACAA+TGG 0.581252 7_3:+84213172 Msa1131670:CDS
GGGTTCTTCATGATAAGAGG+TGG 0.587087 7_3:+84213022 Msa1131670:CDS
TTAGTTTGCTTCATGGACAA+TGG 0.592770 7_3:+84212466 Msa1131670:CDS
ATGCCTAACAAATACTTCCA+AGG 0.595230 7_3:+84213060 Msa1131670:CDS
CAATGCAATACCATTTCCGA+AGG 0.595952 7_3:-84212393 None:intergenic
TTATGGCTGGAGAAATAGCA+TGG 0.599227 7_3:+84212065 None:intergenic
ACCGTAATCAGAATTCATCC+CGG 0.601491 7_3:-84212575 None:intergenic
CTTTGATTTCACAATTGCCA+CGG 0.603398 7_3:-84212638 None:intergenic
ATTAGCAATTTCAGTTGACA+AGG 0.607177 7_3:+84212600 Msa1131670:CDS
AAACCAGTGAAAAGCTGTAG+AGG 0.608044 7_3:-84213231 None:intergenic
AATTCATGTATACAATTCGA+AGG 0.612431 7_3:+84212696 Msa1131670:CDS
TTACAATGGGAAGATAGGAC+AGG 0.618033 7_3:-84212222 None:intergenic
ATGGGTGACGCCGCTAACCG+AGG 0.618591 7_3:+84212726 Msa1131670:CDS
AATTAGAAGTTCCGATGAAG+GGG 0.619209 7_3:-84212420 None:intergenic
TATGAAGGAGAAGCTTGTAA+TGG 0.619491 7_3:+84212945 Msa1131670:CDS
GCTAGCTTGAGAAAATCGGT+TGG 0.622899 7_3:-84212872 None:intergenic
CTTTGTAGTTTACTATACCG+GGG 0.627446 7_3:+84212804 Msa1131670:CDS
ATCGGCAAACCTGATCGACC+GGG 0.628435 7_3:+84212976 Msa1131670:CDS
TATATGCGATTAACGCGTGA+CGG 0.629229 7_3:-84212843 None:intergenic
AGATGTGAGTGCTGTTTCTG+TGG 0.630387 7_3:+84212165 Msa1131670:CDS
GGTTCTTCATGATAAGAGGT+GGG 0.637527 7_3:+84213023 Msa1131670:CDS
TCTCCACCCCGTCAAAACCT+CGG 0.639771 7_3:-84212743 None:intergenic
TCTGAGGTAGCAAATGTGAA+GGG 0.643976 7_3:-84212309 None:intergenic
TCAGTTGACAAGGAATCACA+TGG 0.646810 7_3:+84212610 Msa1131670:CDS
TTTGTAGTTTACTATACCGG+GGG 0.658197 7_3:+84212805 Msa1131670:CDS
ATAAATGTCCGGTAACAAAG+AGG 0.659921 7_3:+84213205 Msa1131670:CDS
CTGGTGAACATAAAATACCA+AGG 0.674014 7_3:-84212334 None:intergenic
CGTCATGCAAAAGGAGACTG+AGG 0.685618 7_3:+84212108 Msa1131670:CDS
TCATGTATACAATTCGAAGG+AGG 0.685980 7_3:+84212699 Msa1131670:CDS
GATGAGAGTGTGATATGCAA+TGG 0.696052 7_3:+84212772 Msa1131670:CDS
TAATCAGAATTCATCCCGGG+AGG 0.709796 7_3:-84212571 None:intergenic
GGAATCACATGGTTATACCG+TGG 0.720898 7_3:+84212621 Msa1131670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATATTCAAAGTTA+TGG + chr7_3:84213129-84213148 Msa1131670:CDS 10.0%
!! TTAATATATATTCAAAGTTA+TGG + chr7_3:84213129-84213148 Msa1131670:CDS 10.0%
!! AATTTTGCCTGATGATTTAT+TGG + chr7_3:84212192-84212211 Msa1131670:CDS 25.0%
! AATTCATGTATACAATTCGA+AGG + chr7_3:84212696-84212715 Msa1131670:CDS 25.0%
! TACTTTGTAGTTTACTATAC+CGG + chr7_3:84212802-84212821 Msa1131670:CDS 25.0%
! TTGACATGAACATTAAACAA+TGG + chr7_3:84213172-84213191 Msa1131670:CDS 25.0%
! TGAACATTAAACAATGGAAA+TGG + chr7_3:84213178-84213197 Msa1131670:CDS 25.0%
!! AATTTTGCCTGATGATTTAT+TGG + chr7_3:84212192-84212211 Msa1131670:CDS 25.0%
! AATTCATGTATACAATTCGA+AGG + chr7_3:84212696-84212715 Msa1131670:CDS 25.0%
! TACTTTGTAGTTTACTATAC+CGG + chr7_3:84212802-84212821 Msa1131670:CDS 25.0%
! TTGACATGAACATTAAACAA+TGG + chr7_3:84213172-84213191 Msa1131670:CDS 25.0%
! TGAACATTAAACAATGGAAA+TGG + chr7_3:84213178-84213197 Msa1131670:CDS 25.0%
ATAAAATACCAAGGTTTCTG+AGG - chr7_3:84212328-84212347 None:intergenic 30.0%
TGGTTCATTTCTTCATCATA+TGG + chr7_3:84212442-84212461 Msa1131670:CDS 30.0%
! TCCAGCAACTTTTAGTAATA+GGG - chr7_3:84212540-84212559 None:intergenic 30.0%
! ATCCAGCAACTTTTAGTAAT+AGG - chr7_3:84212541-84212560 None:intergenic 30.0%
ATTAGCAATTTCAGTTGACA+AGG + chr7_3:84212600-84212619 Msa1131670:CDS 30.0%
ACTTTGTAGTTTACTATACC+GGG + chr7_3:84212803-84212822 Msa1131670:CDS 30.0%
ATAAAATACCAAGGTTTCTG+AGG - chr7_3:84212328-84212347 None:intergenic 30.0%
TGGTTCATTTCTTCATCATA+TGG + chr7_3:84212442-84212461 Msa1131670:CDS 30.0%
! TCCAGCAACTTTTAGTAATA+GGG - chr7_3:84212540-84212559 None:intergenic 30.0%
! ATCCAGCAACTTTTAGTAAT+AGG - chr7_3:84212541-84212560 None:intergenic 30.0%
ATTAGCAATTTCAGTTGACA+AGG + chr7_3:84212600-84212619 Msa1131670:CDS 30.0%
ACTTTGTAGTTTACTATACC+GGG + chr7_3:84212803-84212822 Msa1131670:CDS 30.0%
ATACGCTCCAATAAATCATC+AGG - chr7_3:84212202-84212221 None:intergenic 35.0%
AATGCTTACAATGGGAAGAT+AGG - chr7_3:84212230-84212249 None:intergenic 35.0%
CTGGTGAACATAAAATACCA+AGG - chr7_3:84212337-84212356 None:intergenic 35.0%
ATGCTTATGATCCTAACCTT+CGG + chr7_3:84212377-84212396 Msa1131670:CDS 35.0%
AATTAGAAGTTCCGATGAAG+GGG - chr7_3:84212423-84212442 None:intergenic 35.0%
CAATTAGAAGTTCCGATGAA+GGG - chr7_3:84212424-84212443 None:intergenic 35.0%
!! ATATGGCTTAGTTTGCTTCA+TGG + chr7_3:84212459-84212478 Msa1131670:CDS 35.0%
!! TTAGTTTGCTTCATGGACAA+TGG + chr7_3:84212466-84212485 Msa1131670:CDS 35.0%
ACCCTATTACTAAAAGTTGC+TGG + chr7_3:84212536-84212555 Msa1131670:CDS 35.0%
! CTTTGATTTCACAATTGCCA+CGG - chr7_3:84212641-84212660 None:intergenic 35.0%
TCATGTATACAATTCGAAGG+AGG + chr7_3:84212699-84212718 Msa1131670:CDS 35.0%
CTTTGTAGTTTACTATACCG+GGG + chr7_3:84212804-84212823 Msa1131670:CDS 35.0%
TTTGTAGTTTACTATACCGG+GGG + chr7_3:84212805-84212824 Msa1131670:CDS 35.0%
! TCAAGCTAGCTTGAGAAAAT+CGG - chr7_3:84212879-84212898 None:intergenic 35.0%
TCTCCTTCATATTCATTAGG+CGG - chr7_3:84212936-84212955 None:intergenic 35.0%
GCTTCTCCTTCATATTCATT+AGG - chr7_3:84212939-84212958 None:intergenic 35.0%
TATGAAGGAGAAGCTTGTAA+TGG + chr7_3:84212945-84212964 Msa1131670:CDS 35.0%
TAATCAAAGGAATCGGTATC+TGG + chr7_3:84213001-84213020 Msa1131670:CDS 35.0%
AATCAAAGGAATCGGTATCT+GGG + chr7_3:84213002-84213021 Msa1131670:CDS 35.0%
!! GGAAGTATTTGTTAGGCATT+CGG - chr7_3:84213059-84213078 None:intergenic 35.0%
ATGCCTAACAAATACTTCCA+AGG + chr7_3:84213060-84213079 Msa1131670:CDS 35.0%
!! AAGCCTTGGAAGTATTTGTT+AGG - chr7_3:84213066-84213085 None:intergenic 35.0%
AACAAATACTTCCAAGGCTT+TGG + chr7_3:84213066-84213085 Msa1131670:CDS 35.0%
GAAATGGTCACATAAATGTC+CGG + chr7_3:84213194-84213213 Msa1131670:CDS 35.0%
ATAAATGTCCGGTAACAAAG+AGG + chr7_3:84213205-84213224 Msa1131670:CDS 35.0%
! TATGGAGCAATTTCAAGTCT+CGG - chr7_3:84213267-84213286 None:intergenic 35.0%
ATACGCTCCAATAAATCATC+AGG - chr7_3:84212202-84212221 None:intergenic 35.0%
AATGCTTACAATGGGAAGAT+AGG - chr7_3:84212230-84212249 None:intergenic 35.0%
CTGGTGAACATAAAATACCA+AGG - chr7_3:84212337-84212356 None:intergenic 35.0%
ATGCTTATGATCCTAACCTT+CGG + chr7_3:84212377-84212396 Msa1131670:CDS 35.0%
AATTAGAAGTTCCGATGAAG+GGG - chr7_3:84212423-84212442 None:intergenic 35.0%
CAATTAGAAGTTCCGATGAA+GGG - chr7_3:84212424-84212443 None:intergenic 35.0%
!! ATATGGCTTAGTTTGCTTCA+TGG + chr7_3:84212459-84212478 Msa1131670:CDS 35.0%
!! TTAGTTTGCTTCATGGACAA+TGG + chr7_3:84212466-84212485 Msa1131670:CDS 35.0%
ACCCTATTACTAAAAGTTGC+TGG + chr7_3:84212536-84212555 Msa1131670:CDS 35.0%
! CTTTGATTTCACAATTGCCA+CGG - chr7_3:84212641-84212660 None:intergenic 35.0%
TCATGTATACAATTCGAAGG+AGG + chr7_3:84212699-84212718 Msa1131670:CDS 35.0%
CTTTGTAGTTTACTATACCG+GGG + chr7_3:84212804-84212823 Msa1131670:CDS 35.0%
TTTGTAGTTTACTATACCGG+GGG + chr7_3:84212805-84212824 Msa1131670:CDS 35.0%
! TCAAGCTAGCTTGAGAAAAT+CGG - chr7_3:84212879-84212898 None:intergenic 35.0%
TCTCCTTCATATTCATTAGG+CGG - chr7_3:84212936-84212955 None:intergenic 35.0%
GCTTCTCCTTCATATTCATT+AGG - chr7_3:84212939-84212958 None:intergenic 35.0%
TATGAAGGAGAAGCTTGTAA+TGG + chr7_3:84212945-84212964 Msa1131670:CDS 35.0%
TAATCAAAGGAATCGGTATC+TGG + chr7_3:84213001-84213020 Msa1131670:CDS 35.0%
AATCAAAGGAATCGGTATCT+GGG + chr7_3:84213002-84213021 Msa1131670:CDS 35.0%
!! GGAAGTATTTGTTAGGCATT+CGG - chr7_3:84213059-84213078 None:intergenic 35.0%
ATGCCTAACAAATACTTCCA+AGG + chr7_3:84213060-84213079 Msa1131670:CDS 35.0%
!! AAGCCTTGGAAGTATTTGTT+AGG - chr7_3:84213066-84213085 None:intergenic 35.0%
AACAAATACTTCCAAGGCTT+TGG + chr7_3:84213066-84213085 Msa1131670:CDS 35.0%
GAAATGGTCACATAAATGTC+CGG + chr7_3:84213194-84213213 Msa1131670:CDS 35.0%
ATAAATGTCCGGTAACAAAG+AGG + chr7_3:84213205-84213224 Msa1131670:CDS 35.0%
! TATGGAGCAATTTCAAGTCT+CGG - chr7_3:84213267-84213286 None:intergenic 35.0%
! TGATGATGACGTCATGCAAA+AGG + chr7_3:84212099-84212118 Msa1131670:CDS 40.0%
!! GAGGACTTTGATTTGGAACT+TGG + chr7_3:84212127-84212146 Msa1131670:CDS 40.0%
!! CTTTGATTTGGAACTTGGTG+AGG + chr7_3:84212132-84212151 Msa1131670:CDS 40.0%
TTACAATGGGAAGATAGGAC+AGG - chr7_3:84212225-84212244 None:intergenic 40.0%
GCTCGGAAAATGCTTACAAT+GGG - chr7_3:84212238-84212257 None:intergenic 40.0%
TGCTCGGAAAATGCTTACAA+TGG - chr7_3:84212239-84212258 None:intergenic 40.0%
! GATGGCACACGATTTTTGAA+AGG + chr7_3:84212275-84212294 Msa1131670:CDS 40.0%
! TCTGAGGTAGCAAATGTGAA+GGG - chr7_3:84212312-84212331 None:intergenic 40.0%
!! TTCTGAGGTAGCAAATGTGA+AGG - chr7_3:84212313-84212332 None:intergenic 40.0%
! ATTTGCTACCTCAGAAACCT+TGG + chr7_3:84212317-84212336 Msa1131670:CDS 40.0%
ATGATCCTAACCTTCGGAAA+TGG + chr7_3:84212383-84212402 Msa1131670:CDS 40.0%
CAATACCATTTCCGAAGGTT+AGG - chr7_3:84212391-84212410 None:intergenic 40.0%
CAATGCAATACCATTTCCGA+AGG - chr7_3:84212396-84212415 None:intergenic 40.0%
CCAATTAGAAGTTCCGATGA+AGG - chr7_3:84212425-84212444 None:intergenic 40.0%
CCTTCATCGGAACTTCTAAT+TGG + chr7_3:84212422-84212441 Msa1131670:CDS 40.0%
ACCGTAATCAGAATTCATCC+CGG - chr7_3:84212578-84212597 None:intergenic 40.0%
TCAGTTGACAAGGAATCACA+TGG + chr7_3:84212610-84212629 Msa1131670:CDS 40.0%
!!! TCCCTGGAAACTTTTTTCAG+TGG + chr7_3:84212665-84212684 Msa1131670:CDS 40.0%
CCCACTGAAAAAAGTTTCCA+GGG - chr7_3:84212669-84212688 None:intergenic 40.0%
!!! CCCTGGAAACTTTTTTCAGT+GGG + chr7_3:84212666-84212685 Msa1131670:CDS 40.0%
TCCCACTGAAAAAAGTTTCC+AGG - chr7_3:84212670-84212689 None:intergenic 40.0%
TGTATACAATTCGAAGGAGG+AGG + chr7_3:84212702-84212721 Msa1131670:CDS 40.0%
! GATGAGAGTGTGATATGCAA+TGG + chr7_3:84212772-84212791 Msa1131670:CDS 40.0%
TATATGCGATTAACGCGTGA+CGG - chr7_3:84212846-84212865 None:intergenic 40.0%
CTCCTTCATATTCATTAGGC+GGG - chr7_3:84212935-84212954 None:intergenic 40.0%
AAGGAGAAGCTTGTAATGGT+TGG + chr7_3:84212949-84212968 Msa1131670:CDS 40.0%
CTTGTAATGGTTGGAGGAAT+CGG + chr7_3:84212958-84212977 Msa1131670:CDS 40.0%
TCTGGGTTCTTCATGATAAG+AGG + chr7_3:84213019-84213038 Msa1131670:CDS 40.0%
GGTTCTTCATGATAAGAGGT+GGG + chr7_3:84213023-84213042 Msa1131670:CDS 40.0%
!! GATGATGTTTTTGCTAGCAG+TGG + chr7_3:84213096-84213115 Msa1131670:CDS 40.0%
! ATGTCAAATGTGAGAAGTGC+AGG - chr7_3:84213159-84213178 None:intergenic 40.0%
AGAGGAAACCTCTTTGTTAC+CGG - chr7_3:84213216-84213235 None:intergenic 40.0%
! TTTCCTCTACAGCTTTTCAC+TGG + chr7_3:84213228-84213247 Msa1131670:CDS 40.0%
AAACCAGTGAAAAGCTGTAG+AGG - chr7_3:84213234-84213253 None:intergenic 40.0%
! TGATGATGACGTCATGCAAA+AGG + chr7_3:84212099-84212118 Msa1131670:CDS 40.0%
!! GAGGACTTTGATTTGGAACT+TGG + chr7_3:84212127-84212146 Msa1131670:CDS 40.0%
!! CTTTGATTTGGAACTTGGTG+AGG + chr7_3:84212132-84212151 Msa1131670:CDS 40.0%
TTACAATGGGAAGATAGGAC+AGG - chr7_3:84212225-84212244 None:intergenic 40.0%
GCTCGGAAAATGCTTACAAT+GGG - chr7_3:84212238-84212257 None:intergenic 40.0%
TGCTCGGAAAATGCTTACAA+TGG - chr7_3:84212239-84212258 None:intergenic 40.0%
! GATGGCACACGATTTTTGAA+AGG + chr7_3:84212275-84212294 Msa1131670:CDS 40.0%
! TCTGAGGTAGCAAATGTGAA+GGG - chr7_3:84212312-84212331 None:intergenic 40.0%
!! TTCTGAGGTAGCAAATGTGA+AGG - chr7_3:84212313-84212332 None:intergenic 40.0%
! ATTTGCTACCTCAGAAACCT+TGG + chr7_3:84212317-84212336 Msa1131670:CDS 40.0%
ATGATCCTAACCTTCGGAAA+TGG + chr7_3:84212383-84212402 Msa1131670:CDS 40.0%
CAATACCATTTCCGAAGGTT+AGG - chr7_3:84212391-84212410 None:intergenic 40.0%
CAATGCAATACCATTTCCGA+AGG - chr7_3:84212396-84212415 None:intergenic 40.0%
CCAATTAGAAGTTCCGATGA+AGG - chr7_3:84212425-84212444 None:intergenic 40.0%
CCTTCATCGGAACTTCTAAT+TGG + chr7_3:84212422-84212441 Msa1131670:CDS 40.0%
ACCGTAATCAGAATTCATCC+CGG - chr7_3:84212578-84212597 None:intergenic 40.0%
TCAGTTGACAAGGAATCACA+TGG + chr7_3:84212610-84212629 Msa1131670:CDS 40.0%
!!! TCCCTGGAAACTTTTTTCAG+TGG + chr7_3:84212665-84212684 Msa1131670:CDS 40.0%
CCCACTGAAAAAAGTTTCCA+GGG - chr7_3:84212669-84212688 None:intergenic 40.0%
!!! CCCTGGAAACTTTTTTCAGT+GGG + chr7_3:84212666-84212685 Msa1131670:CDS 40.0%
TCCCACTGAAAAAAGTTTCC+AGG - chr7_3:84212670-84212689 None:intergenic 40.0%
TGTATACAATTCGAAGGAGG+AGG + chr7_3:84212702-84212721 Msa1131670:CDS 40.0%
! GATGAGAGTGTGATATGCAA+TGG + chr7_3:84212772-84212791 Msa1131670:CDS 40.0%
TATATGCGATTAACGCGTGA+CGG - chr7_3:84212846-84212865 None:intergenic 40.0%
CTCCTTCATATTCATTAGGC+GGG - chr7_3:84212935-84212954 None:intergenic 40.0%
AAGGAGAAGCTTGTAATGGT+TGG + chr7_3:84212949-84212968 Msa1131670:CDS 40.0%
CTTGTAATGGTTGGAGGAAT+CGG + chr7_3:84212958-84212977 Msa1131670:CDS 40.0%
TCTGGGTTCTTCATGATAAG+AGG + chr7_3:84213019-84213038 Msa1131670:CDS 40.0%
GGTTCTTCATGATAAGAGGT+GGG + chr7_3:84213023-84213042 Msa1131670:CDS 40.0%
!! GATGATGTTTTTGCTAGCAG+TGG + chr7_3:84213096-84213115 Msa1131670:CDS 40.0%
! ATGTCAAATGTGAGAAGTGC+AGG - chr7_3:84213159-84213178 None:intergenic 40.0%
AGAGGAAACCTCTTTGTTAC+CGG - chr7_3:84213216-84213235 None:intergenic 40.0%
! TTTCCTCTACAGCTTTTCAC+TGG + chr7_3:84213228-84213247 Msa1131670:CDS 40.0%
AAACCAGTGAAAAGCTGTAG+AGG - chr7_3:84213234-84213253 None:intergenic 40.0%
GCATGACGTCATCATCATAG+TGG - chr7_3:84212096-84212115 None:intergenic 45.0%
GGAGACTGAGGACTTTGATT+TGG + chr7_3:84212120-84212139 Msa1131670:CDS 45.0%
!! AGATGTGAGTGCTGTTTCTG+TGG + chr7_3:84212165-84212184 Msa1131670:CDS 45.0%
!! TTTTACACACGCAGCTTGCT+CGG - chr7_3:84212255-84212274 None:intergenic 45.0%
CAAGCTGCGTGTGTAAAAGA+TGG + chr7_3:84212257-84212276 Msa1131670:CDS 45.0%
GGATCATAAGCATGACCAGA+TGG - chr7_3:84212370-84212389 None:intergenic 45.0%
! TGCATTGATCTCCCCTTCAT+CGG + chr7_3:84212409-84212428 Msa1131670:CDS 45.0%
TAATCAGAATTCATCCCGGG+AGG - chr7_3:84212574-84212593 None:intergenic 45.0%
CCGTAATCAGAATTCATCCC+GGG - chr7_3:84212577-84212596 None:intergenic 45.0%
CCCGGGATGAATTCTGATTA+CGG + chr7_3:84212574-84212593 Msa1131670:CDS 45.0%
GGAATCACATGGTTATACCG+TGG + chr7_3:84212621-84212640 Msa1131670:CDS 45.0%
GTGAAATCAAAGCAAGTCCC+TGG + chr7_3:84212649-84212668 Msa1131670:CDS 45.0%
! ATTAACGCGTGACGGTTTTC+TGG - chr7_3:84212838-84212857 None:intergenic 45.0%
! GCTAGCTTGAGAAAATCGGT+TGG - chr7_3:84212875-84212894 None:intergenic 45.0%
GAGAAGCTTGTAATGGTTGG+AGG + chr7_3:84212952-84212971 Msa1131670:CDS 45.0%
CCGATTCCTTTGATTATGCC+CGG - chr7_3:84212997-84213016 None:intergenic 45.0%
CCGGGCATAATCAAAGGAAT+CGG + chr7_3:84212994-84213013 Msa1131670:CDS 45.0%
GGGTTCTTCATGATAAGAGG+TGG + chr7_3:84213022-84213041 Msa1131670:CDS 45.0%
CATCAAACTCTCCAAAGCCT+TGG - chr7_3:84213080-84213099 None:intergenic 45.0%
GCATGACGTCATCATCATAG+TGG - chr7_3:84212096-84212115 None:intergenic 45.0%
GGAGACTGAGGACTTTGATT+TGG + chr7_3:84212120-84212139 Msa1131670:CDS 45.0%
!! AGATGTGAGTGCTGTTTCTG+TGG + chr7_3:84212165-84212184 Msa1131670:CDS 45.0%
!! TTTTACACACGCAGCTTGCT+CGG - chr7_3:84212255-84212274 None:intergenic 45.0%
CAAGCTGCGTGTGTAAAAGA+TGG + chr7_3:84212257-84212276 Msa1131670:CDS 45.0%
GGATCATAAGCATGACCAGA+TGG - chr7_3:84212370-84212389 None:intergenic 45.0%
! TGCATTGATCTCCCCTTCAT+CGG + chr7_3:84212409-84212428 Msa1131670:CDS 45.0%
TAATCAGAATTCATCCCGGG+AGG - chr7_3:84212574-84212593 None:intergenic 45.0%
CCGTAATCAGAATTCATCCC+GGG - chr7_3:84212577-84212596 None:intergenic 45.0%
CCCGGGATGAATTCTGATTA+CGG + chr7_3:84212574-84212593 Msa1131670:CDS 45.0%
GGAATCACATGGTTATACCG+TGG + chr7_3:84212621-84212640 Msa1131670:CDS 45.0%
GTGAAATCAAAGCAAGTCCC+TGG + chr7_3:84212649-84212668 Msa1131670:CDS 45.0%
! ATTAACGCGTGACGGTTTTC+TGG - chr7_3:84212838-84212857 None:intergenic 45.0%
! GCTAGCTTGAGAAAATCGGT+TGG - chr7_3:84212875-84212894 None:intergenic 45.0%
GAGAAGCTTGTAATGGTTGG+AGG + chr7_3:84212952-84212971 Msa1131670:CDS 45.0%
CCGATTCCTTTGATTATGCC+CGG - chr7_3:84212997-84213016 None:intergenic 45.0%
CCGGGCATAATCAAAGGAAT+CGG + chr7_3:84212994-84213013 Msa1131670:CDS 45.0%
GGGTTCTTCATGATAAGAGG+TGG + chr7_3:84213022-84213041 Msa1131670:CDS 45.0%
CATCAAACTCTCCAAAGCCT+TGG - chr7_3:84213080-84213099 None:intergenic 45.0%
CGTCATGCAAAAGGAGACTG+AGG + chr7_3:84212108-84212127 Msa1131670:CDS 50.0%
! ACCAGCTCTGATGAACCATC+TGG + chr7_3:84212352-84212371 Msa1131670:CDS 50.0%
ACCAGATGGTTCATCAGAGC+TGG - chr7_3:84212356-84212375 None:intergenic 50.0%
TGGATGCTTCAAAAGCCTCC+CGG + chr7_3:84212556-84212575 Msa1131670:CDS 50.0%
ACAATTCGAAGGAGGAGGCA+TGG + chr7_3:84212707-84212726 Msa1131670:CDS 50.0%
! CAATTCGAAGGAGGAGGCAT+GGG + chr7_3:84212708-84212727 Msa1131670:CDS 50.0%
CGCCCGCCTAATGAATATGA+AGG + chr7_3:84212930-84212949 Msa1131670:CDS 50.0%
AATCGGCAAACCTGATCGAC+CGG + chr7_3:84212975-84212994 Msa1131670:CDS 50.0%
TTGATTATGCCCGGTCGATC+AGG - chr7_3:84212988-84213007 None:intergenic 50.0%
GATCGACCGGGCATAATCAA+AGG + chr7_3:84212988-84213007 Msa1131670:CDS 50.0%
CGTCATGCAAAAGGAGACTG+AGG + chr7_3:84212108-84212127 Msa1131670:CDS 50.0%
! ACCAGCTCTGATGAACCATC+TGG + chr7_3:84212352-84212371 Msa1131670:CDS 50.0%
ACCAGATGGTTCATCAGAGC+TGG - chr7_3:84212356-84212375 None:intergenic 50.0%
TGGATGCTTCAAAAGCCTCC+CGG + chr7_3:84212556-84212575 Msa1131670:CDS 50.0%
ACAATTCGAAGGAGGAGGCA+TGG + chr7_3:84212707-84212726 Msa1131670:CDS 50.0%
! CAATTCGAAGGAGGAGGCAT+GGG + chr7_3:84212708-84212727 Msa1131670:CDS 50.0%
CGCCCGCCTAATGAATATGA+AGG + chr7_3:84212930-84212949 Msa1131670:CDS 50.0%
AATCGGCAAACCTGATCGAC+CGG + chr7_3:84212975-84212994 Msa1131670:CDS 50.0%
TTGATTATGCCCGGTCGATC+AGG - chr7_3:84212988-84213007 None:intergenic 50.0%
GATCGACCGGGCATAATCAA+AGG + chr7_3:84212988-84213007 Msa1131670:CDS 50.0%
GGACAATGGCAGCAGCTTCA+TGG + chr7_3:84212480-84212499 Msa1131670:CDS 55.0%
GGATGCTTCAAAAGCCTCCC+GGG + chr7_3:84212557-84212576 Msa1131670:CDS 55.0%
!! GCCGCTAACCGAGGTTTTGA+CGG + chr7_3:84212735-84212754 Msa1131670:CDS 55.0%
CCCGTCAAAACCTCGGTTAG+CGG - chr7_3:84212739-84212758 None:intergenic 55.0%
!! CCGCTAACCGAGGTTTTGAC+GGG + chr7_3:84212736-84212755 Msa1131670:CDS 55.0%
!! CGCTAACCGAGGTTTTGACG+GGG + chr7_3:84212737-84212756 Msa1131670:CDS 55.0%
!! TAACCGAGGTTTTGACGGGG+TGG + chr7_3:84212740-84212759 Msa1131670:CDS 55.0%
TCTCCACCCCGTCAAAACCT+CGG - chr7_3:84212746-84212765 None:intergenic 55.0%
!! GTTTTCTGGTGGAACACCCC+CGG - chr7_3:84212824-84212843 None:intergenic 55.0%
! AACGCGTGACGGTTTTCTGG+TGG - chr7_3:84212835-84212854 None:intergenic 55.0%
ATCGGCAAACCTGATCGACC+GGG + chr7_3:84212976-84212995 Msa1131670:CDS 55.0%
GGACAATGGCAGCAGCTTCA+TGG + chr7_3:84212480-84212499 Msa1131670:CDS 55.0%
GGATGCTTCAAAAGCCTCCC+GGG + chr7_3:84212557-84212576 Msa1131670:CDS 55.0%
!! GCCGCTAACCGAGGTTTTGA+CGG + chr7_3:84212735-84212754 Msa1131670:CDS 55.0%
CCCGTCAAAACCTCGGTTAG+CGG - chr7_3:84212739-84212758 None:intergenic 55.0%
!! CCGCTAACCGAGGTTTTGAC+GGG + chr7_3:84212736-84212755 Msa1131670:CDS 55.0%
!! CGCTAACCGAGGTTTTGACG+GGG + chr7_3:84212737-84212756 Msa1131670:CDS 55.0%
!! TAACCGAGGTTTTGACGGGG+TGG + chr7_3:84212740-84212759 Msa1131670:CDS 55.0%
TCTCCACCCCGTCAAAACCT+CGG - chr7_3:84212746-84212765 None:intergenic 55.0%
!! GTTTTCTGGTGGAACACCCC+CGG - chr7_3:84212824-84212843 None:intergenic 55.0%
! AACGCGTGACGGTTTTCTGG+TGG - chr7_3:84212835-84212854 None:intergenic 55.0%
ATCGGCAAACCTGATCGACC+GGG + chr7_3:84212976-84212995 Msa1131670:CDS 55.0%
!! GAGGTTTTGACGGGGTGGAG+AGG + chr7_3:84212745-84212764 Msa1131670:CDS 60.0%
!! GTTTTGACGGGGTGGAGAGG+TGG + chr7_3:84212748-84212767 Msa1131670:CDS 60.0%
CGGGCGCATGTCAGAGAACA+TGG - chr7_3:84212916-84212935 None:intergenic 60.0%
!! GAGGTTTTGACGGGGTGGAG+AGG + chr7_3:84212745-84212764 Msa1131670:CDS 60.0%
!! GTTTTGACGGGGTGGAGAGG+TGG + chr7_3:84212748-84212767 Msa1131670:CDS 60.0%
CGGGCGCATGTCAGAGAACA+TGG - chr7_3:84212916-84212935 None:intergenic 60.0%
ATGGGTGACGCCGCTAACCG+AGG + chr7_3:84212726-84212745 Msa1131670:CDS 65.0%
ATGGGTGACGCCGCTAACCG+AGG + chr7_3:84212726-84212745 Msa1131670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 84212067 84213287 84212067 ID=Msa1131670;Name=Msa1131670
chr7_3 mRNA 84212067 84213287 84212067 ID=Msa1131670-mRNA-1;Parent=Msa1131670;Name=Msa1131670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|406
chr7_3 exon 84212067 84213287 84212067 ID=Msa1131670-mRNA-1:exon:25071;Parent=Msa1131670-mRNA-1
chr7_3 CDS 84212067 84213287 84212067 ID=Msa1131670-mRNA-1:cds;Parent=Msa1131670-mRNA-1
Gene Sequence

>Msa1131670

ATGGCTGGAGAAATAGCATGGATCAGCCACTATGATGATGACGTCATGCAAAAGGAGACTGAGGACTTTGATTTGGAACTTGGTGAGGAAATTGATAAAGATGTGAGTGCTGTTTCTGTGGACATAATTTTGCCTGATGATTTATTGGAGCGTATCCTGTCCTATCTTCCCATTGTAAGCATTTTCCGAGCAAGCTGCGTGTGTAAAAGATGGCACACGATTTTTGAAAGGTTTTTATCGAACCCTTCACATTTGCTACCTCAGAAACCTTGGTATTTTATGTTCACCAGCTCTGATGAACCATCTGGTCATGCTTATGATCCTAACCTTCGGAAATGGTATTGCATTGATCTCCCCTTCATCGGAACTTCTAATTGGTTCATTTCTTCATCATATGGCTTAGTTTGCTTCATGGACAATGGCAGCAGCTTCATGGACAATGAAAGCAGAACTGAACTATGCATGTGCAACCCTATTACTAAAAGTTGCTGGATGCTTCAAAAGCCTCCCGGGATGAATTCTGATTACGGTGCATTAGCAATTTCAGTTGACAAGGAATCACATGGTTATACCGTGGCAATTGTGAAATCAAAGCAAGTCCCTGGAAACTTTTTTCAGTGGGATATCTCAATTCATGTATACAATTCGAAGGAGGAGGCATGGGTGACGCCGCTAACCGAGGTTTTGACGGGGTGGAGAGGTGGTGATGAGAGTGTGATATGCAATGGTGTGCTGTACTTTGTAGTTTACTATACCGGGGGTGTTCCACCAGAAAACCGTCACGCGTTAATCGCATATAATATCTCCAACCGATTTTCTCAAGCTAGCTTGAGCTTTATTCATATACCATGTTCTCTGACATGCGCCCGCCTAATGAATATGAAGGAGAAGCTTGTAATGGTTGGAGGAATCGGCAAACCTGATCGACCGGGCATAATCAAAGGAATCGGTATCTGGGTTCTTCATGATAAGAGGTGGGAAGAGATCGTCCGAATGCCTAACAAATACTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCAGTGGCATTGATGATTTAATATATATTCAAAGTTATGGTTCTCCTGCACTTCTCACATTTGACATGAACATTAAACAATGGAAATGGTCACATAAATGTCCGGTAACAAAGAGGTTTCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCGAGACTTGAAATTGCTCCATAG

Protein sequence

>Msa1131670

MAGEIAWISHYDDDVMQKETEDFDLELGEEIDKDVSAVSVDIILPDDLLERILSYLPIVSIFRASCVCKRWHTIFERFLSNPSHLLPQKPWYFMFTSSDEPSGHAYDPNLRKWYCIDLPFIGTSNWFISSSYGLVCFMDNGSSFMDNESRTELCMCNPITKSCWMLQKPPGMNSDYGALAISVDKESHGYTVAIVKSKQVPGNFFQWDISIHVYNSKEEAWVTPLTEVLTGWRGGDESVICNGVLYFVVYYTGGVPPENRHALIAYNISNRFSQASLSFIHIPCSLTCARLMNMKEKLVMVGGIGKPDRPGIIKGIGIWVLHDKRWEEIVRMPNKYFQGFGEFDDVFASSGIDDLIYIQSYGSPALLTFDMNIKQWKWSHKCPVTKRFPLQLFTGFCFEPRLEIAP*