Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999350 | KEH27117.1 | 54.386 | 57 | 26 | 0 | 2 | 58 | 77 | 133 | 3.01e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999350 | A0A072UBW5 | 54.386 | 57 | 26 | 0 | 2 | 58 | 77 | 133 | 1.44e-11 | 66.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0999350 | 0.824387 | 8.295973e-54 | -8.615850e-47 |
| Msa0015710 | Msa0999350 | 0.844606 | 6.814060e-59 | -8.615850e-47 |
| Msa0022640 | Msa0999350 | 0.814244 | 1.700873e-51 | -8.615850e-47 |
| Msa0055450 | Msa0999350 | 0.856906 | 2.343088e-62 | -8.615850e-47 |
| Msa0062440 | Msa0999350 | 0.806002 | 1.016165e-49 | -8.615850e-47 |
| Msa0080990 | Msa0999350 | 0.826081 | 3.299437e-54 | -8.615850e-47 |
| Msa0104500 | Msa0999350 | 0.823105 | 1.656452e-53 | -8.615850e-47 |
| Msa0106790 | Msa0999350 | 0.823673 | 1.220624e-53 | -8.615850e-47 |
| Msa0109880 | Msa0999350 | 0.813544 | 2.425288e-51 | -8.615850e-47 |
| Msa0118400 | Msa0999350 | 0.806847 | 6.741430e-50 | -8.615850e-47 |
| Msa0639460 | Msa0999350 | 0.833090 | 6.511761e-56 | -8.615850e-47 |
| Msa0641360 | Msa0999350 | 0.827982 | 1.157976e-54 | -8.615850e-47 |
| Msa0667850 | Msa0999350 | 0.839220 | 1.805155e-57 | -8.615850e-47 |
| Msa0669840 | Msa0999350 | 0.856053 | 4.171247e-62 | -8.615850e-47 |
| Msa0682360 | Msa0999350 | 0.867567 | 1.244768e-65 | -8.615850e-47 |
| Msa0682530 | Msa0999350 | 0.819486 | 1.132334e-52 | -8.615850e-47 |
| Msa0725860 | Msa0999350 | 0.839248 | 1.775409e-57 | -8.615850e-47 |
| Msa0739480 | Msa0999350 | 0.825515 | 4.494631e-54 | -8.615850e-47 |
| Msa0739580 | Msa0999350 | 0.824868 | 6.392648e-54 | -8.615850e-47 |
| Msa0742180 | Msa0999350 | 0.823012 | 1.741691e-53 | -8.615850e-47 |
| Msa0745110 | Msa0999350 | 0.816055 | 6.735818e-52 | -8.615850e-47 |
| Msa0748000 | Msa0999350 | 0.822904 | 1.845582e-53 | -8.615850e-47 |
| Msa0782360 | Msa0999350 | 0.803796 | 2.937662e-49 | -8.615850e-47 |
| Msa0786040 | Msa0999350 | 0.838086 | 3.544029e-57 | -8.615850e-47 |
| Msa0823400 | Msa0999350 | 0.840856 | 6.755951e-58 | -8.615850e-47 |
| Msa0828830 | Msa0999350 | 0.815628 | 8.385614e-52 | -8.615850e-47 |
| Msa0124130 | Msa0999350 | 0.842232 | 2.932783e-58 | -8.615850e-47 |
| Msa0149140 | Msa0999350 | 0.814895 | 1.220202e-51 | -8.615850e-47 |
| Msa0152500 | Msa0999350 | 0.812216 | 4.739769e-51 | -8.615850e-47 |
| Msa0153420 | Msa0999350 | 0.810831 | 9.480623e-51 | -8.615850e-47 |
| Msa0156250 | Msa0999350 | 0.813518 | 2.458472e-51 | -8.615850e-47 |
| Msa0161680 | Msa0999350 | 0.820814 | 5.621658e-53 | -8.615850e-47 |
| Msa0176470 | Msa0999350 | 0.826398 | 2.772701e-54 | -8.615850e-47 |
| Msa0194380 | Msa0999350 | 0.847417 | 1.171919e-59 | -8.615850e-47 |
| Msa0203030 | Msa0999350 | 0.813387 | 2.626800e-51 | -8.615850e-47 |
| Msa0206800 | Msa0999350 | 0.814447 | 1.533212e-51 | -8.615850e-47 |
| Msa0212150 | Msa0999350 | 0.825041 | 5.817510e-54 | -8.615850e-47 |
| Msa0236110 | Msa0999350 | 0.831328 | 1.776311e-55 | -8.615850e-47 |
| Msa0373960 | Msa0999350 | 0.888939 | 3.783852e-73 | -8.615850e-47 |
| Msa0382010 | Msa0999350 | 0.800782 | 1.226263e-48 | -8.615850e-47 |
| Msa0406000 | Msa0999350 | 0.844833 | 5.916387e-59 | -8.615850e-47 |
| Msa0417440 | Msa0999350 | 0.807647 | 4.563733e-50 | -8.615850e-47 |
| Msa0423100 | Msa0999350 | 0.875156 | 3.848024e-68 | -8.615850e-47 |
| Msa0424340 | Msa0999350 | 0.821029 | 5.017093e-53 | -8.615850e-47 |
| Msa0441590 | Msa0999350 | 0.812000 | 5.282922e-51 | -8.615850e-47 |
| Msa0451400 | Msa0999350 | 0.841706 | 4.037379e-58 | -8.615850e-47 |
| Msa0469260 | Msa0999350 | 0.880691 | 4.454190e-70 | -8.615850e-47 |
| Msa0476590 | Msa0999350 | 0.822026 | 2.952164e-53 | -8.615850e-47 |
| Msa0996270 | Msa0999350 | 0.820730 | 5.878424e-53 | -8.615850e-47 |
| Msa0999300 | Msa0999350 | 0.834818 | 2.405314e-56 | -8.615850e-47 |
| Msa0999320 | Msa0999350 | 0.821281 | 4.389846e-53 | -8.615850e-47 |
| Msa0999340 | Msa0999350 | 0.915732 | 4.148238e-85 | -8.615850e-47 |
| Msa0999350 | Msa0999360 | 0.919198 | 6.074946e-87 | -8.615850e-47 |
| Msa0999350 | Msa0999380 | 0.806001 | 1.016651e-49 | -8.615850e-47 |
| Msa0999350 | Msa0999390 | 0.908814 | 1.132401e-81 | -8.615850e-47 |
| Msa0999350 | Msa0999400 | 0.993039 | 4.701169e-197 | -8.615850e-47 |
| Msa0999350 | Msa0999410 | 0.921517 | 3.234291e-88 | -8.615850e-47 |
| Msa0999350 | Msa0999700 | 0.867614 | 1.201675e-65 | -8.615850e-47 |
| Msa0999350 | Msa1001870 | 0.819215 | 1.305455e-52 | -8.615850e-47 |
| Msa0999350 | Msa1001890 | 0.803719 | 3.047739e-49 | -8.615850e-47 |
| Msa0999350 | Msa1010110 | 0.812716 | 3.686065e-51 | -8.615850e-47 |
| Msa0999350 | Msa1034680 | 0.848331 | 6.561563e-60 | -8.615850e-47 |
| Msa0999350 | Msa1047990 | 0.818895 | 1.543579e-52 | -8.615850e-47 |
| Msa0999350 | Msa1060580 | 0.811132 | 8.158717e-51 | -8.615850e-47 |
| Msa0999350 | Msa1073340 | 0.818781 | 1.638827e-52 | -8.615850e-47 |
| Msa0999350 | Msa1084240 | 0.802775 | 4.780088e-49 | -8.615850e-47 |
| Msa0999350 | Msa1092020 | 0.842553 | 2.410850e-58 | -8.615850e-47 |
| Msa0999350 | Msa1100140 | 0.800085 | 1.700513e-48 | -8.615850e-47 |
| Msa0999350 | Msa1105890 | 0.822352 | 2.480746e-53 | -8.615850e-47 |
| Msa0999350 | Msa1125810 | 0.807140 | 5.846758e-50 | -8.615850e-47 |
| Msa0999350 | Msa1135380 | 0.830759 | 2.450370e-55 | -8.615850e-47 |
| Msa0999350 | Msa1145020 | 0.816915 | 4.322645e-52 | -8.615850e-47 |
| Msa0999350 | Msa1171310 | 0.806168 | 9.378510e-50 | -8.615850e-47 |
| Msa0999350 | Msa1176580 | 0.829919 | 3.930799e-55 | -8.615850e-47 |
| Msa0999350 | Msa1177400 | 0.812329 | 4.478816e-51 | -8.615850e-47 |
| Msa0999350 | Msa1183430 | 0.827096 | 1.889128e-54 | -8.615850e-47 |
| Msa0999350 | Msa1201110 | 0.832416 | 9.572832e-56 | -8.615850e-47 |
| Msa0999350 | Msa1201160 | 0.836576 | 8.631441e-57 | -8.615850e-47 |
| Msa0999350 | Msa1228190 | 0.903512 | 3.213204e-79 | -8.615850e-47 |
| Msa0999350 | Msa1233560 | 0.801722 | 7.875368e-49 | -8.615850e-47 |
| Msa0999350 | Msa1243020 | 0.837454 | 5.149303e-57 | -8.615850e-47 |
| Msa0999350 | Msa1271260 | 0.912171 | 2.642564e-83 | -8.615850e-47 |
| Msa0999350 | Msa1292010 | 0.845250 | 4.566848e-59 | -8.615850e-47 |
| Msa0999350 | Msa1292040 | 0.819371 | 1.203274e-52 | -8.615850e-47 |
| Msa0999350 | Msa1294290 | 0.849481 | 3.145095e-60 | -8.615850e-47 |
| Msa0999350 | Msa1305510 | 0.810701 | 1.011475e-50 | -8.615850e-47 |
| Msa0999350 | Msa1316540 | 0.804499 | 2.097532e-49 | -8.615850e-47 |
| Msa0999350 | Msa1339440 | 0.874958 | 4.493598e-68 | -8.615850e-47 |
| Msa0999350 | Msa1345420 | 0.837260 | 5.771750e-57 | -8.615850e-47 |
| Msa0999350 | Msa1351420 | 0.822943 | 1.806929e-53 | -8.615850e-47 |
| Msa0999350 | Msa1379970 | 0.843403 | 1.431788e-58 | -8.615850e-47 |
| Msa0999350 | Msa1388770 | 0.829453 | 5.103315e-55 | -8.615850e-47 |
| Msa0999350 | Msa1389050 | 0.873368 | 1.551715e-67 | -8.615850e-47 |
| Msa0999350 | Msa1406780 | 0.825689 | 4.088660e-54 | -8.615850e-47 |
| Msa0999350 | Msa1421550 | 0.821207 | 4.564099e-53 | -8.615850e-47 |
| Msa0999350 | Msa1424690 | 0.809672 | 1.685470e-50 | -8.615850e-47 |
| Msa0999350 | Msa1431850 | 0.838388 | 2.962625e-57 | -8.615850e-47 |
| Msa0999350 | Msa1435480 | 0.879372 | 1.315043e-69 | -8.615850e-47 |
| Msa0999350 | Msa1438250 | 0.817499 | 3.195126e-52 | -8.615850e-47 |
| Msa0999350 | Msa1442630 | 0.818388 | 2.011508e-52 | -8.615850e-47 |
| Msa0999350 | Msa1456730 | 0.819521 | 1.111984e-52 | -8.615850e-47 |
| Msa0999350 | Msa1458910 | 0.875236 | 3.612751e-68 | -8.615850e-47 |
| Msa0999350 | Msa1462530 | 0.838875 | 2.218013e-57 | -8.615850e-47 |
| Msa0251240 | Msa0999350 | 0.808685 | 2.742687e-50 | -8.615850e-47 |
| Msa0252770 | Msa0999350 | 0.849676 | 2.775289e-60 | -8.615850e-47 |
| Msa0273990 | Msa0999350 | 0.817103 | 3.922611e-52 | -8.615850e-47 |
| Msa0277290 | Msa0999350 | 0.815856 | 7.458918e-52 | -8.615850e-47 |
| Msa0280750 | Msa0999350 | 0.823496 | 1.342847e-53 | -8.615850e-47 |
| Msa0288190 | Msa0999350 | 0.806472 | 8.091448e-50 | -8.615850e-47 |
| Msa0289920 | Msa0999350 | 0.811412 | 7.090935e-51 | -8.615850e-47 |
| Msa0291330 | Msa0999350 | 0.800838 | 1.194125e-48 | -8.615850e-47 |
| Msa0306120 | Msa0999350 | 0.828732 | 7.635102e-55 | -8.615850e-47 |
| Msa0314630 | Msa0999350 | 0.831793 | 1.364791e-55 | -8.615850e-47 |
| Msa0322830 | Msa0999350 | 0.861262 | 1.160644e-63 | -8.615850e-47 |
| Msa0322840 | Msa0999350 | 0.868068 | 8.589540e-66 | -8.615850e-47 |
| Msa0322860 | Msa0999350 | 0.854058 | 1.585010e-61 | -8.615850e-47 |
| Msa0326540 | Msa0999350 | 0.800096 | 1.691335e-48 | -8.615850e-47 |
| Msa0329620 | Msa0999350 | 0.849070 | 4.094644e-60 | -8.615850e-47 |
| Msa0331540 | Msa0999350 | 0.804955 | 1.685231e-49 | -8.615850e-47 |
| Msa0351770 | Msa0999350 | 0.826751 | 2.284208e-54 | -8.615850e-47 |
| Msa0359250 | Msa0999350 | 0.826535 | 2.572586e-54 | -8.615850e-47 |
| Msa0492190 | Msa0999350 | 0.831204 | 1.906103e-55 | -8.615850e-47 |
| Msa0515950 | Msa0999350 | 0.804813 | 1.804121e-49 | -8.615850e-47 |
| Msa0520510 | Msa0999350 | 0.845249 | 4.568121e-59 | -8.615850e-47 |
| Msa0535040 | Msa0999350 | 0.805138 | 1.542852e-49 | -8.615850e-47 |
| Msa0546710 | Msa0999350 | 0.821428 | 4.059616e-53 | -8.615850e-47 |
| Msa0575740 | Msa0999350 | 0.835470 | 1.647041e-56 | -8.615850e-47 |
| Msa0591790 | Msa0999350 | 0.822970 | 1.781032e-53 | -8.615850e-47 |
| Msa0591800 | Msa0999350 | 0.873984 | 9.624279e-68 | -8.615850e-47 |
| Msa0594090 | Msa0999350 | 0.811139 | 8.129411e-51 | -8.615850e-47 |
| Msa0843640 | Msa0999350 | 0.804377 | 2.223827e-49 | -8.615850e-47 |
| Msa0845940 | Msa0999350 | 0.855778 | 5.021939e-62 | -8.615850e-47 |
| Msa0853550 | Msa0999350 | 0.810207 | 1.292908e-50 | -8.615850e-47 |
| Msa0860170 | Msa0999350 | 0.800828 | 1.200152e-48 | -8.615850e-47 |
| Msa0860280 | Msa0999350 | 0.832798 | 7.697705e-56 | -8.615850e-47 |
| Msa0862310 | Msa0999350 | 0.840975 | 6.289596e-58 | -8.615850e-47 |
| Msa0865390 | Msa0999350 | 0.803103 | 4.090592e-49 | -8.615850e-47 |
| Msa0885060 | Msa0999350 | 0.812494 | 4.121419e-51 | -8.615850e-47 |
| Msa0899950 | Msa0999350 | 0.866626 | 2.484969e-65 | -8.615850e-47 |
| Msa0927120 | Msa0999350 | 0.828727 | 7.656908e-55 | -8.615850e-47 |
| Msa0941820 | Msa0999350 | 0.811751 | 5.984532e-51 | -8.615850e-47 |
| Msa0946210 | Msa0999350 | 0.826388 | 2.787953e-54 | -8.615850e-47 |
| Msa0961560 | Msa0999350 | 0.802024 | 6.825278e-49 | -8.615850e-47 |
| Msa0964840 | Msa0999350 | 0.815491 | 8.999150e-52 | -8.615850e-47 |
| Msa0965310 | Msa0999350 | 0.872122 | 4.053772e-67 | -8.615850e-47 |
| Msa0979510 | Msa0999350 | 0.809319 | 2.007128e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999350 | MtrunA17_Chr6g0485481 | 54.386 | 57 | 26 | 0 | 2 | 58 | 77 | 133 | 2.76e-15 | 66.2 |
| Msa0999350 | MtrunA17_Chr6g0485491 | 49.123 | 57 | 29 | 0 | 2 | 58 | 37 | 93 | 1.44e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTCAACCGAAGTTTCTT+TGG | 0.278909 | 6_4:+81297076 | Msa0999350:CDS |
| TGATATTCGAAGTGAGCATT+TGG | 0.374908 | 6_4:+81298078 | Msa0999350:CDS |
| TTTGGAAATTGACTGCCATC+TGG | 0.383584 | 6_4:+81298096 | Msa0999350:CDS |
| TTATTGATGCTTGTTTCAAA+GGG | 0.392912 | 6_4:+81296995 | Msa0999350:CDS |
| TTGTCAACCGAAGTTTCTTT+GGG | 0.400068 | 6_4:+81297077 | Msa0999350:CDS |
| TATAGATGTCTTAGACGAAA+TGG | 0.402741 | 6_4:+81296948 | Msa0999350:CDS |
| ATTATTGATGCTTGTTTCAA+AGG | 0.437843 | 6_4:+81296994 | Msa0999350:CDS |
| CGGTTGACAATTCATCAGTT+GGG | 0.454673 | 6_4:-81297064 | None:intergenic |
| TCGGTTGACAATTCATCAGT+TGG | 0.476268 | 6_4:-81297065 | None:intergenic |
| TTGGAAATTGACTGCCATCT+GGG | 0.509277 | 6_4:+81298097 | Msa0999350:CDS |
| GTCTTAGACGAAATGGCTGA+TGG | 0.517792 | 6_4:+81296955 | Msa0999350:CDS |
| TCTTAGACGAAATGGCTGAT+GGG | 0.541606 | 6_4:+81296956 | Msa0999350:CDS |
| GAACAACACAACTTTGTTGT+GGG | 0.546320 | 6_4:-81297034 | None:intergenic |
| GTCTTGTGCATGTGACATCA+AGG | 0.559632 | 6_4:-81298039 | None:intergenic |
| CAAAGAACCCAAAGAAACTT+CGG | 0.563407 | 6_4:-81297084 | None:intergenic |
| TTGATGCTTGTTTCAAAGGG+GGG | 0.571541 | 6_4:+81296998 | Msa0999350:CDS |
| TTCTTCAATATCCTCCCAGA+TGG | 0.574708 | 6_4:-81298111 | None:intergenic |
| TGAACAACACAACTTTGTTG+TGG | 0.575855 | 6_4:-81297035 | None:intergenic |
| ATTGATGCTTGTTTCAAAGG+GGG | 0.586181 | 6_4:+81296997 | Msa0999350:CDS |
| CTTAGACGAAATGGCTGATG+GGG | 0.616658 | 6_4:+81296957 | Msa0999350:CDS |
| TATTGATGCTTGTTTCAAAG+GGG | 0.663412 | 6_4:+81296996 | Msa0999350:CDS |
| GAAATTGACTGCCATCTGGG+AGG | 0.678917 | 6_4:+81298100 | Msa0999350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAATATAAATGTTGTT+TGG | - | chr6_4:81297594-81297613 | None:intergenic | 15.0% |
| !! | AACTTAATATAAATGTTGTT+TGG | - | chr6_4:81297594-81297613 | None:intergenic | 15.0% |
| !!! | ATTCTTGATGCATTATTTTA+GGG | - | chr6_4:81297145-81297164 | None:intergenic | 20.0% |
| !!! | AATTCTTGATGCATTATTTT+AGG | - | chr6_4:81297146-81297165 | None:intergenic | 20.0% |
| !!! | CATTTGAGATTTCTTTAAAT+TGG | + | chr6_4:81297382-81297401 | Msa0999350:intron | 20.0% |
| !! | TAGAAGATAAGTCAATAAAA+AGG | - | chr6_4:81297552-81297571 | None:intergenic | 20.0% |
| !!! | AAAAAGTCACTTTTTAATTG+AGG | - | chr6_4:81297617-81297636 | None:intergenic | 20.0% |
| !!! | AAAATATGACTTCTGAAATA+AGG | + | chr6_4:81297656-81297675 | Msa0999350:intron | 20.0% |
| !! | ACATAAAATATGTGTTCATT+GGG | - | chr6_4:81297742-81297761 | None:intergenic | 20.0% |
| !! | AACATAAAATATGTGTTCAT+TGG | - | chr6_4:81297743-81297762 | None:intergenic | 20.0% |
| !! | TATGTTTCATAAATGTTGTT+TGG | + | chr6_4:81297757-81297776 | Msa0999350:intron | 20.0% |
| !!! | AGTTTCTTTGTTATAACTAT+TGG | + | chr6_4:81297842-81297861 | Msa0999350:intron | 20.0% |
| !! | ACATCAATTGAATTATTGTT+TGG | + | chr6_4:81297942-81297961 | Msa0999350:intron | 20.0% |
| !!! | ATTCTTGATGCATTATTTTA+GGG | - | chr6_4:81297145-81297164 | None:intergenic | 20.0% |
| !!! | AATTCTTGATGCATTATTTT+AGG | - | chr6_4:81297146-81297165 | None:intergenic | 20.0% |
| !!! | CATTTGAGATTTCTTTAAAT+TGG | + | chr6_4:81297382-81297401 | Msa0999350:intron | 20.0% |
| !! | TAGAAGATAAGTCAATAAAA+AGG | - | chr6_4:81297552-81297571 | None:intergenic | 20.0% |
| !!! | AAAAAGTCACTTTTTAATTG+AGG | - | chr6_4:81297617-81297636 | None:intergenic | 20.0% |
| !!! | AAAATATGACTTCTGAAATA+AGG | + | chr6_4:81297656-81297675 | Msa0999350:intron | 20.0% |
| !! | ACATAAAATATGTGTTCATT+GGG | - | chr6_4:81297742-81297761 | None:intergenic | 20.0% |
| !! | AACATAAAATATGTGTTCAT+TGG | - | chr6_4:81297743-81297762 | None:intergenic | 20.0% |
| !! | TATGTTTCATAAATGTTGTT+TGG | + | chr6_4:81297757-81297776 | Msa0999350:intron | 20.0% |
| !!! | AGTTTCTTTGTTATAACTAT+TGG | + | chr6_4:81297842-81297861 | Msa0999350:intron | 20.0% |
| !! | ACATCAATTGAATTATTGTT+TGG | + | chr6_4:81297942-81297961 | Msa0999350:intron | 20.0% |
| ! | ATTATTGATGCTTGTTTCAA+AGG | + | chr6_4:81296994-81297013 | Msa0999350:CDS | 25.0% |
| ! | TTATTGATGCTTGTTTCAAA+GGG | + | chr6_4:81296995-81297014 | Msa0999350:CDS | 25.0% |
| ! | GACATGATTCAAAGAATATT+TGG | + | chr6_4:81297170-81297189 | Msa0999350:intron | 25.0% |
| !! | CAAAGAATATTTGGTAATCA+TGG | + | chr6_4:81297179-81297198 | Msa0999350:intron | 25.0% |
| !!! | TTTTTTGTTACAGTCTAGTA+AGG | + | chr6_4:81297415-81297434 | Msa0999350:intron | 25.0% |
| ! | CAAAATAAATTAAGCGAAGA+GGG | - | chr6_4:81297454-81297473 | None:intergenic | 25.0% |
| ! | TAATTCCTCAATTACAATCA+CGG | - | chr6_4:81297489-81297508 | None:intergenic | 25.0% |
| ! | CCATACAAATACTTAATTGA+TGG | - | chr6_4:81297900-81297919 | None:intergenic | 25.0% |
| ! | CCATCAATTAAGTATTTGTA+TGG | + | chr6_4:81297897-81297916 | Msa0999350:intron | 25.0% |
| ! | AGCATTCTATATTTGCTTAA+AGG | + | chr6_4:81298016-81298035 | Msa0999350:intron | 25.0% |
| ! | ATTATTGATGCTTGTTTCAA+AGG | + | chr6_4:81296994-81297013 | Msa0999350:CDS | 25.0% |
| ! | TTATTGATGCTTGTTTCAAA+GGG | + | chr6_4:81296995-81297014 | Msa0999350:CDS | 25.0% |
| ! | GACATGATTCAAAGAATATT+TGG | + | chr6_4:81297170-81297189 | Msa0999350:intron | 25.0% |
| !! | CAAAGAATATTTGGTAATCA+TGG | + | chr6_4:81297179-81297198 | Msa0999350:intron | 25.0% |
| !!! | TTTTTTGTTACAGTCTAGTA+AGG | + | chr6_4:81297415-81297434 | Msa0999350:intron | 25.0% |
| ! | CAAAATAAATTAAGCGAAGA+GGG | - | chr6_4:81297454-81297473 | None:intergenic | 25.0% |
| ! | TAATTCCTCAATTACAATCA+CGG | - | chr6_4:81297489-81297508 | None:intergenic | 25.0% |
| ! | CCATACAAATACTTAATTGA+TGG | - | chr6_4:81297900-81297919 | None:intergenic | 25.0% |
| ! | CCATCAATTAAGTATTTGTA+TGG | + | chr6_4:81297897-81297916 | Msa0999350:intron | 25.0% |
| ! | AGCATTCTATATTTGCTTAA+AGG | + | chr6_4:81298016-81298035 | Msa0999350:intron | 25.0% |
| TATAGATGTCTTAGACGAAA+TGG | + | chr6_4:81296948-81296967 | Msa0999350:CDS | 30.0% | |
| TATTGATGCTTGTTTCAAAG+GGG | + | chr6_4:81296996-81297015 | Msa0999350:CDS | 30.0% | |
| AACACACTTTACAAACACAT+TGG | - | chr6_4:81297114-81297133 | None:intergenic | 30.0% | |
| ! | AGAATATTTGGTAATCATGG+AGG | + | chr6_4:81297182-81297201 | Msa0999350:intron | 30.0% |
| GCAAAATAAATTAAGCGAAG+AGG | - | chr6_4:81297455-81297474 | None:intergenic | 30.0% | |
| GAGGAATTATTATACTATGC+TGG | + | chr6_4:81297500-81297519 | Msa0999350:intron | 30.0% | |
| ! | TACTATGCTGGTAGATTTTT+AGG | + | chr6_4:81297512-81297531 | Msa0999350:intron | 30.0% |
| ! | ACTATGCTGGTAGATTTTTA+GGG | + | chr6_4:81297513-81297532 | Msa0999350:intron | 30.0% |
| AGATAAGTCAATAAAAAGGC+AGG | - | chr6_4:81297548-81297567 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | + | chr6_4:81297567-81297586 | Msa0999350:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | + | chr6_4:81297568-81297587 | Msa0999350:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | - | chr6_4:81297568-81297587 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | - | chr6_4:81297567-81297586 | None:intergenic | 30.0% | |
| TATAGATGTCTTAGACGAAA+TGG | + | chr6_4:81296948-81296967 | Msa0999350:CDS | 30.0% | |
| TATTGATGCTTGTTTCAAAG+GGG | + | chr6_4:81296996-81297015 | Msa0999350:CDS | 30.0% | |
| AACACACTTTACAAACACAT+TGG | - | chr6_4:81297114-81297133 | None:intergenic | 30.0% | |
| ! | AGAATATTTGGTAATCATGG+AGG | + | chr6_4:81297182-81297201 | Msa0999350:intron | 30.0% |
| GCAAAATAAATTAAGCGAAG+AGG | - | chr6_4:81297455-81297474 | None:intergenic | 30.0% | |
| GAGGAATTATTATACTATGC+TGG | + | chr6_4:81297500-81297519 | Msa0999350:intron | 30.0% | |
| ! | TACTATGCTGGTAGATTTTT+AGG | + | chr6_4:81297512-81297531 | Msa0999350:intron | 30.0% |
| ! | ACTATGCTGGTAGATTTTTA+GGG | + | chr6_4:81297513-81297532 | Msa0999350:intron | 30.0% |
| AGATAAGTCAATAAAAAGGC+AGG | - | chr6_4:81297548-81297567 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | + | chr6_4:81297567-81297586 | Msa0999350:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | + | chr6_4:81297568-81297587 | Msa0999350:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | - | chr6_4:81297568-81297587 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | - | chr6_4:81297567-81297586 | None:intergenic | 30.0% | |
| ATTGATGCTTGTTTCAAAGG+GGG | + | chr6_4:81296997-81297016 | Msa0999350:CDS | 35.0% | |
| ! | GAACAACACAACTTTGTTGT+GGG | - | chr6_4:81297037-81297056 | None:intergenic | 35.0% |
| TGAACAACACAACTTTGTTG+TGG | - | chr6_4:81297038-81297057 | None:intergenic | 35.0% | |
| ATTGTCAACCGAAGTTTCTT+TGG | + | chr6_4:81297076-81297095 | Msa0999350:CDS | 35.0% | |
| TTGTCAACCGAAGTTTCTTT+GGG | + | chr6_4:81297077-81297096 | Msa0999350:CDS | 35.0% | |
| CAAAGAACCCAAAGAAACTT+CGG | - | chr6_4:81297087-81297106 | None:intergenic | 35.0% | |
| !! | TCAAGAGTATCATTACGTTC+AGG | - | chr6_4:81297218-81297237 | None:intergenic | 35.0% |
| AGCTAACAAAGTGAGAATTG+AGG | + | chr6_4:81297271-81297290 | Msa0999350:intron | 35.0% | |
| ATGAGGTATGAGAACTCATA+TGG | + | chr6_4:81297319-81297338 | Msa0999350:intron | 35.0% | |
| ! | AGAACTCATATGGTTTTCCT+GGG | + | chr6_4:81297329-81297348 | Msa0999350:intron | 35.0% |
| ATAAATTAAGCGAAGAGGGA+CGG | - | chr6_4:81297450-81297469 | None:intergenic | 35.0% | |
| TACTTCCGTGATTGTAATTG+AGG | + | chr6_4:81297481-81297500 | Msa0999350:intron | 35.0% | |
| !!! | GTAGATTTTTAGGGTCTGTT+TGG | + | chr6_4:81297522-81297541 | Msa0999350:intron | 35.0% |
| ! | TTTGTATTCTGCTTCTGAAG+AGG | - | chr6_4:81297997-81298016 | None:intergenic | 35.0% |
| TGATATTCGAAGTGAGCATT+TGG | + | chr6_4:81298078-81298097 | Msa0999350:CDS | 35.0% | |
| ATTGATGCTTGTTTCAAAGG+GGG | + | chr6_4:81296997-81297016 | Msa0999350:CDS | 35.0% | |
| ! | GAACAACACAACTTTGTTGT+GGG | - | chr6_4:81297037-81297056 | None:intergenic | 35.0% |
| TGAACAACACAACTTTGTTG+TGG | - | chr6_4:81297038-81297057 | None:intergenic | 35.0% | |
| ATTGTCAACCGAAGTTTCTT+TGG | + | chr6_4:81297076-81297095 | Msa0999350:CDS | 35.0% | |
| TTGTCAACCGAAGTTTCTTT+GGG | + | chr6_4:81297077-81297096 | Msa0999350:CDS | 35.0% | |
| CAAAGAACCCAAAGAAACTT+CGG | - | chr6_4:81297087-81297106 | None:intergenic | 35.0% | |
| !! | TCAAGAGTATCATTACGTTC+AGG | - | chr6_4:81297218-81297237 | None:intergenic | 35.0% |
| AGCTAACAAAGTGAGAATTG+AGG | + | chr6_4:81297271-81297290 | Msa0999350:intron | 35.0% | |
| ATGAGGTATGAGAACTCATA+TGG | + | chr6_4:81297319-81297338 | Msa0999350:intron | 35.0% | |
| ! | AGAACTCATATGGTTTTCCT+GGG | + | chr6_4:81297329-81297348 | Msa0999350:intron | 35.0% |
| ATAAATTAAGCGAAGAGGGA+CGG | - | chr6_4:81297450-81297469 | None:intergenic | 35.0% | |
| TACTTCCGTGATTGTAATTG+AGG | + | chr6_4:81297481-81297500 | Msa0999350:intron | 35.0% | |
| !!! | GTAGATTTTTAGGGTCTGTT+TGG | + | chr6_4:81297522-81297541 | Msa0999350:intron | 35.0% |
| ! | TTTGTATTCTGCTTCTGAAG+AGG | - | chr6_4:81297997-81298016 | None:intergenic | 35.0% |
| TGATATTCGAAGTGAGCATT+TGG | + | chr6_4:81298078-81298097 | Msa0999350:CDS | 35.0% | |
| TCTTAGACGAAATGGCTGAT+GGG | + | chr6_4:81296956-81296975 | Msa0999350:CDS | 40.0% | |
| TTGATGCTTGTTTCAAAGGG+GGG | + | chr6_4:81296998-81297017 | Msa0999350:CDS | 40.0% | |
| CGGTTGACAATTCATCAGTT+GGG | - | chr6_4:81297067-81297086 | None:intergenic | 40.0% | |
| TCGGTTGACAATTCATCAGT+TGG | - | chr6_4:81297068-81297087 | None:intergenic | 40.0% | |
| GTATCATTACGTTCAGGTAG+TGG | - | chr6_4:81297212-81297231 | None:intergenic | 40.0% | |
| AGAGTGTAATCGTGTGAATG+AGG | + | chr6_4:81297302-81297321 | Msa0999350:intron | 40.0% | |
| ! | GAGAACTCATATGGTTTTCC+TGG | + | chr6_4:81297328-81297347 | Msa0999350:intron | 40.0% |
| TGTGTTCATTGGGATTCGAA+TGG | - | chr6_4:81297732-81297751 | None:intergenic | 40.0% | |
| ! | ACGTGAATCAGTCTGTTTCT+TGG | - | chr6_4:81297973-81297992 | None:intergenic | 40.0% |
| TTTGGAAATTGACTGCCATC+TGG | + | chr6_4:81298096-81298115 | Msa0999350:CDS | 40.0% | |
| TTGGAAATTGACTGCCATCT+GGG | + | chr6_4:81298097-81298116 | Msa0999350:CDS | 40.0% | |
| TTCTTCAATATCCTCCCAGA+TGG | - | chr6_4:81298114-81298133 | None:intergenic | 40.0% | |
| TCTTAGACGAAATGGCTGAT+GGG | + | chr6_4:81296956-81296975 | Msa0999350:CDS | 40.0% | |
| TTGATGCTTGTTTCAAAGGG+GGG | + | chr6_4:81296998-81297017 | Msa0999350:CDS | 40.0% | |
| CGGTTGACAATTCATCAGTT+GGG | - | chr6_4:81297067-81297086 | None:intergenic | 40.0% | |
| TCGGTTGACAATTCATCAGT+TGG | - | chr6_4:81297068-81297087 | None:intergenic | 40.0% | |
| GTATCATTACGTTCAGGTAG+TGG | - | chr6_4:81297212-81297231 | None:intergenic | 40.0% | |
| AGAGTGTAATCGTGTGAATG+AGG | + | chr6_4:81297302-81297321 | Msa0999350:intron | 40.0% | |
| ! | GAGAACTCATATGGTTTTCC+TGG | + | chr6_4:81297328-81297347 | Msa0999350:intron | 40.0% |
| TGTGTTCATTGGGATTCGAA+TGG | - | chr6_4:81297732-81297751 | None:intergenic | 40.0% | |
| ! | ACGTGAATCAGTCTGTTTCT+TGG | - | chr6_4:81297973-81297992 | None:intergenic | 40.0% |
| TTTGGAAATTGACTGCCATC+TGG | + | chr6_4:81298096-81298115 | Msa0999350:CDS | 40.0% | |
| TTGGAAATTGACTGCCATCT+GGG | + | chr6_4:81298097-81298116 | Msa0999350:CDS | 40.0% | |
| TTCTTCAATATCCTCCCAGA+TGG | - | chr6_4:81298114-81298133 | None:intergenic | 40.0% | |
| GTCTTAGACGAAATGGCTGA+TGG | + | chr6_4:81296955-81296974 | Msa0999350:CDS | 45.0% | |
| CTTAGACGAAATGGCTGATG+GGG | + | chr6_4:81296957-81296976 | Msa0999350:CDS | 45.0% | |
| ! | CATTACGTTCAGGTAGTGGT+AGG | - | chr6_4:81297208-81297227 | None:intergenic | 45.0% |
| CACGCGTAACTGATAGAAGT+AGG | - | chr6_4:81297690-81297709 | None:intergenic | 45.0% | |
| GTTCATTGGGATTCGAATGG+TGG | - | chr6_4:81297729-81297748 | None:intergenic | 45.0% | |
| GTCTTGTGCATGTGACATCA+AGG | - | chr6_4:81298042-81298061 | None:intergenic | 45.0% | |
| GTCTTAGACGAAATGGCTGA+TGG | + | chr6_4:81296955-81296974 | Msa0999350:CDS | 45.0% | |
| CTTAGACGAAATGGCTGATG+GGG | + | chr6_4:81296957-81296976 | Msa0999350:CDS | 45.0% | |
| ! | CATTACGTTCAGGTAGTGGT+AGG | - | chr6_4:81297208-81297227 | None:intergenic | 45.0% |
| CACGCGTAACTGATAGAAGT+AGG | - | chr6_4:81297690-81297709 | None:intergenic | 45.0% | |
| GTTCATTGGGATTCGAATGG+TGG | - | chr6_4:81297729-81297748 | None:intergenic | 45.0% | |
| GTCTTGTGCATGTGACATCA+AGG | - | chr6_4:81298042-81298061 | None:intergenic | 45.0% | |
| ! | CCTTACTTGCTAGACTTCCC+AGG | - | chr6_4:81297349-81297368 | None:intergenic | 50.0% |
| CCTGGGAAGTCTAGCAAGTA+AGG | + | chr6_4:81297346-81297365 | Msa0999350:intron | 50.0% | |
| GAAATTGACTGCCATCTGGG+AGG | + | chr6_4:81298100-81298119 | Msa0999350:CDS | 50.0% | |
| ! | CCTTACTTGCTAGACTTCCC+AGG | - | chr6_4:81297349-81297368 | None:intergenic | 50.0% |
| CCTGGGAAGTCTAGCAAGTA+AGG | + | chr6_4:81297346-81297365 | Msa0999350:intron | 50.0% | |
| GAAATTGACTGCCATCTGGG+AGG | + | chr6_4:81298100-81298119 | Msa0999350:CDS | 50.0% | |
| ! | GGGATTCGAATGGTGGAGCA+GGG | - | chr6_4:81297722-81297741 | None:intergenic | 55.0% |
| ! | TGGGATTCGAATGGTGGAGC+AGG | - | chr6_4:81297723-81297742 | None:intergenic | 55.0% |
| ! | GGGATTCGAATGGTGGAGCA+GGG | - | chr6_4:81297722-81297741 | None:intergenic | 55.0% |
| ! | TGGGATTCGAATGGTGGAGC+AGG | - | chr6_4:81297723-81297742 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81296895 | 81298136 | 81296895 | ID=Msa0999350;Name=Msa0999350 |
| chr6_4 | mRNA | 81296895 | 81298136 | 81296895 | ID=Msa0999350-mRNA-1;Parent=Msa0999350;Name=Msa0999350-mRNA-1;_AED=0.46;_eAED=0.73;_QI=0|0|0|1|0|0|3|0|103 |
| chr6_4 | exon | 81296895 | 81297098 | 81296895 | ID=Msa0999350-mRNA-1:exon:15548;Parent=Msa0999350-mRNA-1 |
| chr6_4 | exon | 81297428 | 81297436 | 81297428 | ID=Msa0999350-mRNA-1:exon:15549;Parent=Msa0999350-mRNA-1 |
| chr6_4 | exon | 81298038 | 81298136 | 81298038 | ID=Msa0999350-mRNA-1:exon:15550;Parent=Msa0999350-mRNA-1 |
| chr6_4 | CDS | 81296895 | 81297098 | 81296895 | ID=Msa0999350-mRNA-1:cds;Parent=Msa0999350-mRNA-1 |
| chr6_4 | CDS | 81297428 | 81297436 | 81297428 | ID=Msa0999350-mRNA-1:cds;Parent=Msa0999350-mRNA-1 |
| chr6_4 | CDS | 81298038 | 81298136 | 81298038 | ID=Msa0999350-mRNA-1:cds;Parent=Msa0999350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
