Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999400 | KEH27117.1 | 54.386 | 57 | 26 | 0 | 2 | 58 | 77 | 133 | 3.01e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999400 | A0A072UBW5 | 54.386 | 57 | 26 | 0 | 2 | 58 | 77 | 133 | 1.44e-11 | 66.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0999400 | 0.814829 | 1.262069e-51 | -8.615850e-47 |
| Msa0015710 | Msa0999400 | 0.832032 | 1.191368e-55 | -8.615850e-47 |
| Msa0022640 | Msa0999400 | 0.810064 | 1.388102e-50 | -8.615850e-47 |
| Msa0055450 | Msa0999400 | 0.850037 | 2.199224e-60 | -8.615850e-47 |
| Msa0080990 | Msa0999400 | 0.818384 | 2.015845e-52 | -8.615850e-47 |
| Msa0104500 | Msa0999400 | 0.814084 | 1.844311e-51 | -8.615850e-47 |
| Msa0106790 | Msa0999400 | 0.815212 | 1.037721e-51 | -8.615850e-47 |
| Msa0109880 | Msa0999400 | 0.802384 | 5.754312e-49 | -8.615850e-47 |
| Msa0639460 | Msa0999400 | 0.840825 | 6.884787e-58 | -8.615850e-47 |
| Msa0641360 | Msa0999400 | 0.821176 | 4.640732e-53 | -8.615850e-47 |
| Msa0667850 | Msa0999400 | 0.832015 | 1.203026e-55 | -8.615850e-47 |
| Msa0669840 | Msa0999400 | 0.847331 | 1.237563e-59 | -8.615850e-47 |
| Msa0682360 | Msa0999400 | 0.872771 | 2.460679e-67 | -8.615850e-47 |
| Msa0682530 | Msa0999400 | 0.811917 | 5.508858e-51 | -8.615850e-47 |
| Msa0725860 | Msa0999400 | 0.828239 | 1.003800e-54 | -8.615850e-47 |
| Msa0739480 | Msa0999400 | 0.814901 | 1.216747e-51 | -8.615850e-47 |
| Msa0739580 | Msa0999400 | 0.815501 | 8.952799e-52 | -8.615850e-47 |
| Msa0742180 | Msa0999400 | 0.812552 | 4.003799e-51 | -8.615850e-47 |
| Msa0745110 | Msa0999400 | 0.822465 | 2.334944e-53 | -8.615850e-47 |
| Msa0748000 | Msa0999400 | 0.814873 | 1.234349e-51 | -8.615850e-47 |
| Msa0786040 | Msa0999400 | 0.828977 | 6.658396e-55 | -8.615850e-47 |
| Msa0823400 | Msa0999400 | 0.830688 | 2.550712e-55 | -8.615850e-47 |
| Msa0828830 | Msa0999400 | 0.804211 | 2.409207e-49 | -8.615850e-47 |
| Msa0124130 | Msa0999400 | 0.830817 | 2.371839e-55 | -8.615850e-47 |
| Msa0149140 | Msa0999400 | 0.805318 | 1.414219e-49 | -8.615850e-47 |
| Msa0152500 | Msa0999400 | 0.802806 | 4.710502e-49 | -8.615850e-47 |
| Msa0153420 | Msa0999400 | 0.801358 | 9.351155e-49 | -8.615850e-47 |
| Msa0156250 | Msa0999400 | 0.801201 | 1.007065e-48 | -8.615850e-47 |
| Msa0161680 | Msa0999400 | 0.815822 | 7.590051e-52 | -8.615850e-47 |
| Msa0176470 | Msa0999400 | 0.815493 | 8.986784e-52 | -8.615850e-47 |
| Msa0194380 | Msa0999400 | 0.840727 | 7.307097e-58 | -8.615850e-47 |
| Msa0203030 | Msa0999400 | 0.806449 | 8.182051e-50 | -8.615850e-47 |
| Msa0206800 | Msa0999400 | 0.807253 | 5.532069e-50 | -8.615850e-47 |
| Msa0212150 | Msa0999400 | 0.817558 | 3.099046e-52 | -8.615850e-47 |
| Msa0236110 | Msa0999400 | 0.824084 | 9.778112e-54 | -8.615850e-47 |
| Msa0373960 | Msa0999400 | 0.880137 | 7.028001e-70 | -8.615850e-47 |
| Msa0406000 | Msa0999400 | 0.835105 | 2.036746e-56 | -8.615850e-47 |
| Msa0423100 | Msa0999400 | 0.867927 | 9.535729e-66 | -8.615850e-47 |
| Msa0424340 | Msa0999400 | 0.813038 | 3.132656e-51 | -8.615850e-47 |
| Msa0441590 | Msa0999400 | 0.804228 | 2.388668e-49 | -8.615850e-47 |
| Msa0451400 | Msa0999400 | 0.831926 | 1.265378e-55 | -8.615850e-47 |
| Msa0469260 | Msa0999400 | 0.871497 | 6.533047e-67 | -8.615850e-47 |
| Msa0476590 | Msa0999400 | 0.812611 | 3.886049e-51 | -8.615850e-47 |
| Msa0996270 | Msa0999400 | 0.811223 | 7.796611e-51 | -8.615850e-47 |
| Msa0999300 | Msa0999400 | 0.823973 | 1.038221e-53 | -8.615850e-47 |
| Msa0999320 | Msa0999400 | 0.812929 | 3.310570e-51 | -8.615850e-47 |
| Msa0999340 | Msa0999400 | 0.914380 | 2.052431e-84 | -8.615850e-47 |
| Msa0999350 | Msa0999400 | 0.993039 | 4.701169e-197 | -8.615850e-47 |
| Msa0999360 | Msa0999400 | 0.913847 | 3.825598e-84 | -8.615850e-47 |
| Msa0999380 | Msa0999400 | 0.815728 | 7.965649e-52 | -8.615850e-47 |
| Msa0999390 | Msa0999400 | 0.918058 | 2.487950e-86 | -8.615850e-47 |
| Msa0999400 | Msa0999410 | 0.926538 | 4.087543e-91 | -8.615850e-47 |
| Msa0999400 | Msa0999700 | 0.859122 | 5.145966e-63 | -8.615850e-47 |
| Msa0999400 | Msa1001870 | 0.810543 | 1.093766e-50 | -8.615850e-47 |
| Msa0999400 | Msa1010110 | 0.805314 | 1.417141e-49 | -8.615850e-47 |
| Msa0999400 | Msa1034680 | 0.844405 | 7.716101e-59 | -8.615850e-47 |
| Msa0999400 | Msa1047990 | 0.809089 | 2.247456e-50 | -8.615850e-47 |
| Msa0999400 | Msa1060580 | 0.819236 | 1.291215e-52 | -8.615850e-47 |
| Msa0999400 | Msa1073340 | 0.811105 | 8.268412e-51 | -8.615850e-47 |
| Msa0999400 | Msa1084240 | 0.806063 | 9.866312e-50 | -8.615850e-47 |
| Msa0999400 | Msa1092020 | 0.832849 | 7.473081e-56 | -8.615850e-47 |
| Msa0999400 | Msa1105890 | 0.822088 | 2.856213e-53 | -8.615850e-47 |
| Msa0999400 | Msa1135380 | 0.821827 | 3.282454e-53 | -8.615850e-47 |
| Msa0999400 | Msa1145020 | 0.806862 | 6.692604e-50 | -8.615850e-47 |
| Msa0999400 | Msa1172620 | 0.801612 | 8.293639e-49 | -8.615850e-47 |
| Msa0999400 | Msa1176580 | 0.825453 | 4.649510e-54 | -8.615850e-47 |
| Msa0999400 | Msa1177400 | 0.801804 | 7.574838e-49 | -8.615850e-47 |
| Msa0999400 | Msa1183430 | 0.822308 | 2.539263e-53 | -8.615850e-47 |
| Msa0999400 | Msa1201110 | 0.823097 | 1.664188e-53 | -8.615850e-47 |
| Msa0999400 | Msa1201160 | 0.827713 | 1.344138e-54 | -8.615850e-47 |
| Msa0999400 | Msa1228190 | 0.895894 | 6.206888e-76 | -8.615850e-47 |
| Msa0999400 | Msa1243020 | 0.837934 | 3.877274e-57 | -8.615850e-47 |
| Msa0999400 | Msa1271260 | 0.902622 | 8.032508e-79 | -8.615850e-47 |
| Msa0999400 | Msa1292010 | 0.838239 | 3.236361e-57 | -8.615850e-47 |
| Msa0999400 | Msa1292040 | 0.809583 | 1.761648e-50 | -8.615850e-47 |
| Msa0999400 | Msa1294290 | 0.840553 | 8.115490e-58 | -8.615850e-47 |
| Msa0999400 | Msa1305510 | 0.802269 | 6.077444e-49 | -8.615850e-47 |
| Msa0999400 | Msa1339440 | 0.875117 | 3.966526e-68 | -8.615850e-47 |
| Msa0999400 | Msa1345420 | 0.829404 | 5.245739e-55 | -8.615850e-47 |
| Msa0999400 | Msa1351420 | 0.823866 | 1.099564e-53 | -8.615850e-47 |
| Msa0999400 | Msa1379970 | 0.836150 | 1.107306e-56 | -8.615850e-47 |
| Msa0999400 | Msa1388770 | 0.823867 | 1.099029e-53 | -8.615850e-47 |
| Msa0999400 | Msa1389050 | 0.864624 | 1.063385e-64 | -8.615850e-47 |
| Msa0999400 | Msa1406780 | 0.815640 | 8.335833e-52 | -8.615850e-47 |
| Msa0999400 | Msa1421550 | 0.810950 | 8.934436e-51 | -8.615850e-47 |
| Msa0999400 | Msa1424690 | 0.801632 | 8.214854e-49 | -8.615850e-47 |
| Msa0999400 | Msa1431850 | 0.828393 | 9.215347e-55 | -8.615850e-47 |
| Msa0999400 | Msa1435480 | 0.871208 | 8.141825e-67 | -8.615850e-47 |
| Msa0999400 | Msa1438250 | 0.814474 | 1.512385e-51 | -8.615850e-47 |
| Msa0999400 | Msa1442630 | 0.809056 | 2.284628e-50 | -8.615850e-47 |
| Msa0999400 | Msa1456730 | 0.808839 | 2.542263e-50 | -8.615850e-47 |
| Msa0999400 | Msa1458910 | 0.866524 | 2.677880e-65 | -8.615850e-47 |
| Msa0999400 | Msa1462530 | 0.829878 | 4.022064e-55 | -8.615850e-47 |
| Msa0251240 | Msa0999400 | 0.803930 | 2.755369e-49 | -8.615850e-47 |
| Msa0252770 | Msa0999400 | 0.843128 | 1.695351e-58 | -8.615850e-47 |
| Msa0273990 | Msa0999400 | 0.808319 | 3.282828e-50 | -8.615850e-47 |
| Msa0277290 | Msa0999400 | 0.808466 | 3.054929e-50 | -8.615850e-47 |
| Msa0280750 | Msa0999400 | 0.823075 | 1.683236e-53 | -8.615850e-47 |
| Msa0288190 | Msa0999400 | 0.801681 | 8.027633e-49 | -8.615850e-47 |
| Msa0289920 | Msa0999400 | 0.804270 | 2.341192e-49 | -8.615850e-47 |
| Msa0306120 | Msa0999400 | 0.818710 | 1.700655e-52 | -8.615850e-47 |
| Msa0314630 | Msa0999400 | 0.823183 | 1.588654e-53 | -8.615850e-47 |
| Msa0322830 | Msa0999400 | 0.858026 | 1.092322e-62 | -8.615850e-47 |
| Msa0322840 | Msa0999400 | 0.862494 | 4.869551e-64 | -8.615850e-47 |
| Msa0322860 | Msa0999400 | 0.848973 | 4.354927e-60 | -8.615850e-47 |
| Msa0329620 | Msa0999400 | 0.841318 | 5.108704e-58 | -8.615850e-47 |
| Msa0331540 | Msa0999400 | 0.805444 | 1.331296e-49 | -8.615850e-47 |
| Msa0351770 | Msa0999400 | 0.820927 | 5.294404e-53 | -8.615850e-47 |
| Msa0359250 | Msa0999400 | 0.816495 | 5.368917e-52 | -8.615850e-47 |
| Msa0492190 | Msa0999400 | 0.830864 | 2.310129e-55 | -8.615850e-47 |
| Msa0515950 | Msa0999400 | 0.801305 | 9.587247e-49 | -8.615850e-47 |
| Msa0520510 | Msa0999400 | 0.837317 | 5.581359e-57 | -8.615850e-47 |
| Msa0546710 | Msa0999400 | 0.827236 | 1.749052e-54 | -8.615850e-47 |
| Msa0575740 | Msa0999400 | 0.827001 | 1.990588e-54 | -8.615850e-47 |
| Msa0591790 | Msa0999400 | 0.814148 | 1.785898e-51 | -8.615850e-47 |
| Msa0591800 | Msa0999400 | 0.868991 | 4.325417e-66 | -8.615850e-47 |
| Msa0594090 | Msa0999400 | 0.801545 | 8.562209e-49 | -8.615850e-47 |
| Msa0845940 | Msa0999400 | 0.845534 | 3.825698e-59 | -8.615850e-47 |
| Msa0853550 | Msa0999400 | 0.811104 | 8.271225e-51 | -8.615850e-47 |
| Msa0860280 | Msa0999400 | 0.824371 | 8.370181e-54 | -8.615850e-47 |
| Msa0862310 | Msa0999400 | 0.831021 | 2.113114e-55 | -8.615850e-47 |
| Msa0865390 | Msa0999400 | 0.805940 | 1.047225e-49 | -8.615850e-47 |
| Msa0885060 | Msa0999400 | 0.802170 | 6.369749e-49 | -8.615850e-47 |
| Msa0899950 | Msa0999400 | 0.857798 | 1.276947e-62 | -8.615850e-47 |
| Msa0927120 | Msa0999400 | 0.817784 | 2.754988e-52 | -8.615850e-47 |
| Msa0941820 | Msa0999400 | 0.800700 | 1.274266e-48 | -8.615850e-47 |
| Msa0946210 | Msa0999400 | 0.824425 | 8.126491e-54 | -8.615850e-47 |
| Msa0964840 | Msa0999400 | 0.807349 | 5.278846e-50 | -8.615850e-47 |
| Msa0965310 | Msa0999400 | 0.863788 | 1.938456e-64 | -8.615850e-47 |
| Msa0979510 | Msa0999400 | 0.805032 | 1.623329e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999400 | MtrunA17_Chr6g0485481 | 54.386 | 57 | 26 | 0 | 2 | 58 | 77 | 133 | 2.76e-15 | 66.2 |
| Msa0999400 | MtrunA17_Chr6g0485491 | 49.123 | 57 | 29 | 0 | 2 | 58 | 37 | 93 | 1.44e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTCAACCGAAGTTTCTT+TGG | 0.278909 | 6_4:+81356182 | Msa0999400:CDS |
| TGATATTCGAAGTGAGCATT+TGG | 0.374908 | 6_4:+81357184 | Msa0999400:CDS |
| TTTGGAAATTGACTGCCATC+TGG | 0.383584 | 6_4:+81357202 | Msa0999400:CDS |
| TTATTGATGCTTGTTTCAAA+GGG | 0.392912 | 6_4:+81356101 | Msa0999400:CDS |
| TTGTCAACCGAAGTTTCTTT+GGG | 0.400068 | 6_4:+81356183 | Msa0999400:CDS |
| TATAGATGTCTTAGACGAAA+TGG | 0.402741 | 6_4:+81356054 | Msa0999400:CDS |
| ATTATTGATGCTTGTTTCAA+AGG | 0.437843 | 6_4:+81356100 | Msa0999400:CDS |
| CGGTTGACAATTCATCAGTT+GGG | 0.454673 | 6_4:-81356170 | None:intergenic |
| TCGGTTGACAATTCATCAGT+TGG | 0.476268 | 6_4:-81356171 | None:intergenic |
| TTGGAAATTGACTGCCATCT+GGG | 0.509277 | 6_4:+81357203 | Msa0999400:CDS |
| GTCTTAGACGAAATGGCTGA+TGG | 0.517792 | 6_4:+81356061 | Msa0999400:CDS |
| TCTTAGACGAAATGGCTGAT+GGG | 0.541606 | 6_4:+81356062 | Msa0999400:CDS |
| GAACAACACAACTTTGTTGT+GGG | 0.546320 | 6_4:-81356140 | None:intergenic |
| GTCTTGTGCATGTGACATCA+AGG | 0.559632 | 6_4:-81357145 | None:intergenic |
| CAAAGAACCCAAAGAAACTT+CGG | 0.563407 | 6_4:-81356190 | None:intergenic |
| TTGATGCTTGTTTCAAAGGG+GGG | 0.571541 | 6_4:+81356104 | Msa0999400:CDS |
| TTCTTCAATATCCTCCCAGA+TGG | 0.574708 | 6_4:-81357217 | None:intergenic |
| TGAACAACACAACTTTGTTG+TGG | 0.575855 | 6_4:-81356141 | None:intergenic |
| ATTGATGCTTGTTTCAAAGG+GGG | 0.586181 | 6_4:+81356103 | Msa0999400:CDS |
| CTTAGACGAAATGGCTGATG+GGG | 0.616658 | 6_4:+81356063 | Msa0999400:CDS |
| TATTGATGCTTGTTTCAAAG+GGG | 0.663412 | 6_4:+81356102 | Msa0999400:CDS |
| GAAATTGACTGCCATCTGGG+AGG | 0.678917 | 6_4:+81357206 | Msa0999400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAATATAAATGTTGTT+TGG | - | chr6_4:81356700-81356719 | None:intergenic | 15.0% |
| !! | AACTTAATATAAATGTTGTT+TGG | - | chr6_4:81356700-81356719 | None:intergenic | 15.0% |
| !!! | ATTCTTGATGCATTATTTTA+GGG | - | chr6_4:81356251-81356270 | None:intergenic | 20.0% |
| !!! | AATTCTTGATGCATTATTTT+AGG | - | chr6_4:81356252-81356271 | None:intergenic | 20.0% |
| !!! | CATTTGAGATTTCTTTAAAT+TGG | + | chr6_4:81356488-81356507 | Msa0999400:intron | 20.0% |
| !! | TAGAAGATAAGTCAATAAAA+AGG | - | chr6_4:81356658-81356677 | None:intergenic | 20.0% |
| !!! | AAAAAGTCACTTTTTAATTG+AGG | - | chr6_4:81356723-81356742 | None:intergenic | 20.0% |
| !!! | AAAATATGACTTCTGAAATA+AGG | + | chr6_4:81356762-81356781 | Msa0999400:intron | 20.0% |
| !! | ACATAAAATATGTGTTCATT+GGG | - | chr6_4:81356848-81356867 | None:intergenic | 20.0% |
| !! | AACATAAAATATGTGTTCAT+TGG | - | chr6_4:81356849-81356868 | None:intergenic | 20.0% |
| !! | TATGTTTCATAAATGTTGTT+TGG | + | chr6_4:81356863-81356882 | Msa0999400:intron | 20.0% |
| !!! | AGTTTCTTTGTTATAACTAT+TGG | + | chr6_4:81356948-81356967 | Msa0999400:intron | 20.0% |
| !! | ACATCAATTGAATTATTGTT+TGG | + | chr6_4:81357048-81357067 | Msa0999400:intron | 20.0% |
| !!! | ATTCTTGATGCATTATTTTA+GGG | - | chr6_4:81356251-81356270 | None:intergenic | 20.0% |
| !!! | AATTCTTGATGCATTATTTT+AGG | - | chr6_4:81356252-81356271 | None:intergenic | 20.0% |
| !!! | CATTTGAGATTTCTTTAAAT+TGG | + | chr6_4:81356488-81356507 | Msa0999400:intron | 20.0% |
| !! | TAGAAGATAAGTCAATAAAA+AGG | - | chr6_4:81356658-81356677 | None:intergenic | 20.0% |
| !!! | AAAAAGTCACTTTTTAATTG+AGG | - | chr6_4:81356723-81356742 | None:intergenic | 20.0% |
| !!! | AAAATATGACTTCTGAAATA+AGG | + | chr6_4:81356762-81356781 | Msa0999400:intron | 20.0% |
| !! | ACATAAAATATGTGTTCATT+GGG | - | chr6_4:81356848-81356867 | None:intergenic | 20.0% |
| !! | AACATAAAATATGTGTTCAT+TGG | - | chr6_4:81356849-81356868 | None:intergenic | 20.0% |
| !! | TATGTTTCATAAATGTTGTT+TGG | + | chr6_4:81356863-81356882 | Msa0999400:intron | 20.0% |
| !!! | AGTTTCTTTGTTATAACTAT+TGG | + | chr6_4:81356948-81356967 | Msa0999400:intron | 20.0% |
| !! | ACATCAATTGAATTATTGTT+TGG | + | chr6_4:81357048-81357067 | Msa0999400:intron | 20.0% |
| ! | ATTATTGATGCTTGTTTCAA+AGG | + | chr6_4:81356100-81356119 | Msa0999400:CDS | 25.0% |
| ! | TTATTGATGCTTGTTTCAAA+GGG | + | chr6_4:81356101-81356120 | Msa0999400:CDS | 25.0% |
| ! | GACATGATTCAAAGAATATT+TGG | + | chr6_4:81356276-81356295 | Msa0999400:intron | 25.0% |
| !! | CAAAGAATATTTGGTAATCA+TGG | + | chr6_4:81356285-81356304 | Msa0999400:intron | 25.0% |
| !!! | TTTTTTGTTACAGTCTAGTA+AGG | + | chr6_4:81356521-81356540 | Msa0999400:intron | 25.0% |
| ! | CAAAATAAATTAAGCGAAGA+GGG | - | chr6_4:81356560-81356579 | None:intergenic | 25.0% |
| ! | TAATTCCTCAATTACAATCA+CGG | - | chr6_4:81356595-81356614 | None:intergenic | 25.0% |
| ! | CCATACAAATACTTAATTGA+TGG | - | chr6_4:81357006-81357025 | None:intergenic | 25.0% |
| ! | CCATCAATTAAGTATTTGTA+TGG | + | chr6_4:81357003-81357022 | Msa0999400:intron | 25.0% |
| ! | AGCATTCTATATTTGCTTAA+AGG | + | chr6_4:81357122-81357141 | Msa0999400:intron | 25.0% |
| ! | ATTATTGATGCTTGTTTCAA+AGG | + | chr6_4:81356100-81356119 | Msa0999400:CDS | 25.0% |
| ! | TTATTGATGCTTGTTTCAAA+GGG | + | chr6_4:81356101-81356120 | Msa0999400:CDS | 25.0% |
| ! | GACATGATTCAAAGAATATT+TGG | + | chr6_4:81356276-81356295 | Msa0999400:intron | 25.0% |
| !! | CAAAGAATATTTGGTAATCA+TGG | + | chr6_4:81356285-81356304 | Msa0999400:intron | 25.0% |
| !!! | TTTTTTGTTACAGTCTAGTA+AGG | + | chr6_4:81356521-81356540 | Msa0999400:intron | 25.0% |
| ! | CAAAATAAATTAAGCGAAGA+GGG | - | chr6_4:81356560-81356579 | None:intergenic | 25.0% |
| ! | TAATTCCTCAATTACAATCA+CGG | - | chr6_4:81356595-81356614 | None:intergenic | 25.0% |
| ! | CCATACAAATACTTAATTGA+TGG | - | chr6_4:81357006-81357025 | None:intergenic | 25.0% |
| ! | CCATCAATTAAGTATTTGTA+TGG | + | chr6_4:81357003-81357022 | Msa0999400:intron | 25.0% |
| ! | AGCATTCTATATTTGCTTAA+AGG | + | chr6_4:81357122-81357141 | Msa0999400:intron | 25.0% |
| TATAGATGTCTTAGACGAAA+TGG | + | chr6_4:81356054-81356073 | Msa0999400:CDS | 30.0% | |
| TATTGATGCTTGTTTCAAAG+GGG | + | chr6_4:81356102-81356121 | Msa0999400:CDS | 30.0% | |
| AACACACTTTACAAACACAT+TGG | - | chr6_4:81356220-81356239 | None:intergenic | 30.0% | |
| ! | AGAATATTTGGTAATCATGG+AGG | + | chr6_4:81356288-81356307 | Msa0999400:intron | 30.0% |
| GCAAAATAAATTAAGCGAAG+AGG | - | chr6_4:81356561-81356580 | None:intergenic | 30.0% | |
| GAGGAATTATTATACTATGC+TGG | + | chr6_4:81356606-81356625 | Msa0999400:intron | 30.0% | |
| ! | TACTATGCTGGTAGATTTTT+AGG | + | chr6_4:81356618-81356637 | Msa0999400:intron | 30.0% |
| ! | ACTATGCTGGTAGATTTTTA+GGG | + | chr6_4:81356619-81356638 | Msa0999400:intron | 30.0% |
| AGATAAGTCAATAAAAAGGC+AGG | - | chr6_4:81356654-81356673 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | + | chr6_4:81356673-81356692 | Msa0999400:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | + | chr6_4:81356674-81356693 | Msa0999400:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | - | chr6_4:81356674-81356693 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | - | chr6_4:81356673-81356692 | None:intergenic | 30.0% | |
| TATAGATGTCTTAGACGAAA+TGG | + | chr6_4:81356054-81356073 | Msa0999400:CDS | 30.0% | |
| TATTGATGCTTGTTTCAAAG+GGG | + | chr6_4:81356102-81356121 | Msa0999400:CDS | 30.0% | |
| AACACACTTTACAAACACAT+TGG | - | chr6_4:81356220-81356239 | None:intergenic | 30.0% | |
| ! | AGAATATTTGGTAATCATGG+AGG | + | chr6_4:81356288-81356307 | Msa0999400:intron | 30.0% |
| GCAAAATAAATTAAGCGAAG+AGG | - | chr6_4:81356561-81356580 | None:intergenic | 30.0% | |
| GAGGAATTATTATACTATGC+TGG | + | chr6_4:81356606-81356625 | Msa0999400:intron | 30.0% | |
| ! | TACTATGCTGGTAGATTTTT+AGG | + | chr6_4:81356618-81356637 | Msa0999400:intron | 30.0% |
| ! | ACTATGCTGGTAGATTTTTA+GGG | + | chr6_4:81356619-81356638 | Msa0999400:intron | 30.0% |
| AGATAAGTCAATAAAAAGGC+AGG | - | chr6_4:81356654-81356673 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | + | chr6_4:81356673-81356692 | Msa0999400:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | + | chr6_4:81356674-81356693 | Msa0999400:intron | 30.0% | |
| TCTACTTCAAAGTAAAAGCA+GGG | - | chr6_4:81356674-81356693 | None:intergenic | 30.0% | |
| TTCTACTTCAAAGTAAAAGC+AGG | - | chr6_4:81356673-81356692 | None:intergenic | 30.0% | |
| ATTGATGCTTGTTTCAAAGG+GGG | + | chr6_4:81356103-81356122 | Msa0999400:CDS | 35.0% | |
| ! | GAACAACACAACTTTGTTGT+GGG | - | chr6_4:81356143-81356162 | None:intergenic | 35.0% |
| TGAACAACACAACTTTGTTG+TGG | - | chr6_4:81356144-81356163 | None:intergenic | 35.0% | |
| ATTGTCAACCGAAGTTTCTT+TGG | + | chr6_4:81356182-81356201 | Msa0999400:CDS | 35.0% | |
| TTGTCAACCGAAGTTTCTTT+GGG | + | chr6_4:81356183-81356202 | Msa0999400:CDS | 35.0% | |
| CAAAGAACCCAAAGAAACTT+CGG | - | chr6_4:81356193-81356212 | None:intergenic | 35.0% | |
| !! | TCAAGAGTATCATTACGTTC+AGG | - | chr6_4:81356324-81356343 | None:intergenic | 35.0% |
| AGCTAACAAAGTGAGAATTG+AGG | + | chr6_4:81356377-81356396 | Msa0999400:intron | 35.0% | |
| ATGAGGTATGAGAACTCATA+TGG | + | chr6_4:81356425-81356444 | Msa0999400:intron | 35.0% | |
| ! | AGAACTCATATGGTTTTCCT+GGG | + | chr6_4:81356435-81356454 | Msa0999400:intron | 35.0% |
| ATAAATTAAGCGAAGAGGGA+CGG | - | chr6_4:81356556-81356575 | None:intergenic | 35.0% | |
| TACTTCCGTGATTGTAATTG+AGG | + | chr6_4:81356587-81356606 | Msa0999400:intron | 35.0% | |
| !!! | GTAGATTTTTAGGGTCTGTT+TGG | + | chr6_4:81356628-81356647 | Msa0999400:intron | 35.0% |
| ! | TTTGTATTCTGCTTCTGAAG+AGG | - | chr6_4:81357103-81357122 | None:intergenic | 35.0% |
| TGATATTCGAAGTGAGCATT+TGG | + | chr6_4:81357184-81357203 | Msa0999400:CDS | 35.0% | |
| ATTGATGCTTGTTTCAAAGG+GGG | + | chr6_4:81356103-81356122 | Msa0999400:CDS | 35.0% | |
| ! | GAACAACACAACTTTGTTGT+GGG | - | chr6_4:81356143-81356162 | None:intergenic | 35.0% |
| TGAACAACACAACTTTGTTG+TGG | - | chr6_4:81356144-81356163 | None:intergenic | 35.0% | |
| ATTGTCAACCGAAGTTTCTT+TGG | + | chr6_4:81356182-81356201 | Msa0999400:CDS | 35.0% | |
| TTGTCAACCGAAGTTTCTTT+GGG | + | chr6_4:81356183-81356202 | Msa0999400:CDS | 35.0% | |
| CAAAGAACCCAAAGAAACTT+CGG | - | chr6_4:81356193-81356212 | None:intergenic | 35.0% | |
| !! | TCAAGAGTATCATTACGTTC+AGG | - | chr6_4:81356324-81356343 | None:intergenic | 35.0% |
| AGCTAACAAAGTGAGAATTG+AGG | + | chr6_4:81356377-81356396 | Msa0999400:intron | 35.0% | |
| ATGAGGTATGAGAACTCATA+TGG | + | chr6_4:81356425-81356444 | Msa0999400:intron | 35.0% | |
| ! | AGAACTCATATGGTTTTCCT+GGG | + | chr6_4:81356435-81356454 | Msa0999400:intron | 35.0% |
| ATAAATTAAGCGAAGAGGGA+CGG | - | chr6_4:81356556-81356575 | None:intergenic | 35.0% | |
| TACTTCCGTGATTGTAATTG+AGG | + | chr6_4:81356587-81356606 | Msa0999400:intron | 35.0% | |
| !!! | GTAGATTTTTAGGGTCTGTT+TGG | + | chr6_4:81356628-81356647 | Msa0999400:intron | 35.0% |
| ! | TTTGTATTCTGCTTCTGAAG+AGG | - | chr6_4:81357103-81357122 | None:intergenic | 35.0% |
| TGATATTCGAAGTGAGCATT+TGG | + | chr6_4:81357184-81357203 | Msa0999400:CDS | 35.0% | |
| TCTTAGACGAAATGGCTGAT+GGG | + | chr6_4:81356062-81356081 | Msa0999400:CDS | 40.0% | |
| TTGATGCTTGTTTCAAAGGG+GGG | + | chr6_4:81356104-81356123 | Msa0999400:CDS | 40.0% | |
| CGGTTGACAATTCATCAGTT+GGG | - | chr6_4:81356173-81356192 | None:intergenic | 40.0% | |
| TCGGTTGACAATTCATCAGT+TGG | - | chr6_4:81356174-81356193 | None:intergenic | 40.0% | |
| GTATCATTACGTTCAGGTAG+TGG | - | chr6_4:81356318-81356337 | None:intergenic | 40.0% | |
| AGAGTGTAATCGTGTGAATG+AGG | + | chr6_4:81356408-81356427 | Msa0999400:intron | 40.0% | |
| ! | GAGAACTCATATGGTTTTCC+TGG | + | chr6_4:81356434-81356453 | Msa0999400:intron | 40.0% |
| TGTGTTCATTGGGATTCGAA+TGG | - | chr6_4:81356838-81356857 | None:intergenic | 40.0% | |
| ! | ACGTGAATCAGTCTGTTTCT+TGG | - | chr6_4:81357079-81357098 | None:intergenic | 40.0% |
| TTTGGAAATTGACTGCCATC+TGG | + | chr6_4:81357202-81357221 | Msa0999400:CDS | 40.0% | |
| TTGGAAATTGACTGCCATCT+GGG | + | chr6_4:81357203-81357222 | Msa0999400:CDS | 40.0% | |
| TTCTTCAATATCCTCCCAGA+TGG | - | chr6_4:81357220-81357239 | None:intergenic | 40.0% | |
| TCTTAGACGAAATGGCTGAT+GGG | + | chr6_4:81356062-81356081 | Msa0999400:CDS | 40.0% | |
| TTGATGCTTGTTTCAAAGGG+GGG | + | chr6_4:81356104-81356123 | Msa0999400:CDS | 40.0% | |
| CGGTTGACAATTCATCAGTT+GGG | - | chr6_4:81356173-81356192 | None:intergenic | 40.0% | |
| TCGGTTGACAATTCATCAGT+TGG | - | chr6_4:81356174-81356193 | None:intergenic | 40.0% | |
| GTATCATTACGTTCAGGTAG+TGG | - | chr6_4:81356318-81356337 | None:intergenic | 40.0% | |
| AGAGTGTAATCGTGTGAATG+AGG | + | chr6_4:81356408-81356427 | Msa0999400:intron | 40.0% | |
| ! | GAGAACTCATATGGTTTTCC+TGG | + | chr6_4:81356434-81356453 | Msa0999400:intron | 40.0% |
| TGTGTTCATTGGGATTCGAA+TGG | - | chr6_4:81356838-81356857 | None:intergenic | 40.0% | |
| ! | ACGTGAATCAGTCTGTTTCT+TGG | - | chr6_4:81357079-81357098 | None:intergenic | 40.0% |
| TTTGGAAATTGACTGCCATC+TGG | + | chr6_4:81357202-81357221 | Msa0999400:CDS | 40.0% | |
| TTGGAAATTGACTGCCATCT+GGG | + | chr6_4:81357203-81357222 | Msa0999400:CDS | 40.0% | |
| TTCTTCAATATCCTCCCAGA+TGG | - | chr6_4:81357220-81357239 | None:intergenic | 40.0% | |
| GTCTTAGACGAAATGGCTGA+TGG | + | chr6_4:81356061-81356080 | Msa0999400:CDS | 45.0% | |
| CTTAGACGAAATGGCTGATG+GGG | + | chr6_4:81356063-81356082 | Msa0999400:CDS | 45.0% | |
| ! | CATTACGTTCAGGTAGTGGT+AGG | - | chr6_4:81356314-81356333 | None:intergenic | 45.0% |
| CACGCGTAACTGATAGAAGT+AGG | - | chr6_4:81356796-81356815 | None:intergenic | 45.0% | |
| GTTCATTGGGATTCGAATGG+TGG | - | chr6_4:81356835-81356854 | None:intergenic | 45.0% | |
| GTCTTGTGCATGTGACATCA+AGG | - | chr6_4:81357148-81357167 | None:intergenic | 45.0% | |
| GTCTTAGACGAAATGGCTGA+TGG | + | chr6_4:81356061-81356080 | Msa0999400:CDS | 45.0% | |
| CTTAGACGAAATGGCTGATG+GGG | + | chr6_4:81356063-81356082 | Msa0999400:CDS | 45.0% | |
| ! | CATTACGTTCAGGTAGTGGT+AGG | - | chr6_4:81356314-81356333 | None:intergenic | 45.0% |
| CACGCGTAACTGATAGAAGT+AGG | - | chr6_4:81356796-81356815 | None:intergenic | 45.0% | |
| GTTCATTGGGATTCGAATGG+TGG | - | chr6_4:81356835-81356854 | None:intergenic | 45.0% | |
| GTCTTGTGCATGTGACATCA+AGG | - | chr6_4:81357148-81357167 | None:intergenic | 45.0% | |
| ! | CCTTACTTGCTAGACTTCCC+AGG | - | chr6_4:81356455-81356474 | None:intergenic | 50.0% |
| CCTGGGAAGTCTAGCAAGTA+AGG | + | chr6_4:81356452-81356471 | Msa0999400:intron | 50.0% | |
| GAAATTGACTGCCATCTGGG+AGG | + | chr6_4:81357206-81357225 | Msa0999400:CDS | 50.0% | |
| ! | CCTTACTTGCTAGACTTCCC+AGG | - | chr6_4:81356455-81356474 | None:intergenic | 50.0% |
| CCTGGGAAGTCTAGCAAGTA+AGG | + | chr6_4:81356452-81356471 | Msa0999400:intron | 50.0% | |
| GAAATTGACTGCCATCTGGG+AGG | + | chr6_4:81357206-81357225 | Msa0999400:CDS | 50.0% | |
| ! | GGGATTCGAATGGTGGAGCA+GGG | - | chr6_4:81356828-81356847 | None:intergenic | 55.0% |
| ! | TGGGATTCGAATGGTGGAGC+AGG | - | chr6_4:81356829-81356848 | None:intergenic | 55.0% |
| ! | GGGATTCGAATGGTGGAGCA+GGG | - | chr6_4:81356828-81356847 | None:intergenic | 55.0% |
| ! | TGGGATTCGAATGGTGGAGC+AGG | - | chr6_4:81356829-81356848 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81356001 | 81357242 | 81356001 | ID=Msa0999400;Name=Msa0999400 |
| chr6_4 | mRNA | 81356001 | 81357242 | 81356001 | ID=Msa0999400-mRNA-1;Parent=Msa0999400;Name=Msa0999400-mRNA-1;_AED=0.46;_eAED=0.73;_QI=0|0|0|1|0|0|3|0|103 |
| chr6_4 | exon | 81356001 | 81356204 | 81356001 | ID=Msa0999400-mRNA-1:exon:15551;Parent=Msa0999400-mRNA-1 |
| chr6_4 | exon | 81356534 | 81356542 | 81356534 | ID=Msa0999400-mRNA-1:exon:15552;Parent=Msa0999400-mRNA-1 |
| chr6_4 | exon | 81357144 | 81357242 | 81357144 | ID=Msa0999400-mRNA-1:exon:15553;Parent=Msa0999400-mRNA-1 |
| chr6_4 | CDS | 81356001 | 81356204 | 81356001 | ID=Msa0999400-mRNA-1:cds;Parent=Msa0999400-mRNA-1 |
| chr6_4 | CDS | 81356534 | 81356542 | 81356534 | ID=Msa0999400-mRNA-1:cds;Parent=Msa0999400-mRNA-1 |
| chr6_4 | CDS | 81357144 | 81357242 | 81357144 | ID=Msa0999400-mRNA-1:cds;Parent=Msa0999400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
