Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010000 | XP_013447725.1 | 98.697 | 307 | 4 | 0 | 1 | 307 | 1 | 307 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010000 | A0A072U7J6 | 98.697 | 307 | 4 | 0 | 1 | 307 | 1 | 307 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa1010000 | 0.802483 | 5.491035e-49 | -8.615850e-47 |
| Msa0076310 | Msa1010000 | 0.812071 | 5.097218e-51 | -8.615850e-47 |
| Msa0110970 | Msa1010000 | 0.813338 | 2.693086e-51 | -8.615850e-47 |
| Msa0130570 | Msa1010000 | 0.814493 | 1.498372e-51 | -8.615850e-47 |
| Msa0183830 | Msa1010000 | 0.800288 | 1.546129e-48 | -8.615850e-47 |
| Msa0387510 | Msa1010000 | 0.801619 | 8.267790e-49 | -8.615850e-47 |
| Msa1010000 | Msa1012810 | 0.808475 | 3.041122e-50 | -8.615850e-47 |
| Msa1010000 | Msa1051550 | 0.806903 | 6.562384e-50 | -8.615850e-47 |
| Msa1010000 | Msa1097640 | 0.855604 | 5.643831e-62 | -8.615850e-47 |
| Msa1010000 | Msa1139810 | 0.876990 | 8.994005e-69 | -8.615850e-47 |
| Msa0510980 | Msa1010000 | 0.801020 | 1.096186e-48 | -8.615850e-47 |
| Msa0880440 | Msa1010000 | 0.811916 | 5.509793e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010000 | MtrunA17_Chr7g0220871 | 98.697 | 307 | 4 | 0 | 1 | 307 | 1 | 307 | 0.0 | 618 |
| Msa1010000 | MtrunA17_Chr6g0457141 | 63.279 | 305 | 96 | 9 | 9 | 307 | 11 | 305 | 9.41e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010000 | AT5G16030.4 | 54.902 | 255 | 88 | 9 | 14 | 245 | 4 | 254 | 7.66e-73 | 225 |
| Msa1010000 | AT5G16030.1 | 55.159 | 252 | 86 | 9 | 14 | 242 | 4 | 251 | 1.54e-70 | 222 |
| Msa1010000 | AT5G16030.3 | 53.462 | 260 | 86 | 9 | 14 | 242 | 4 | 259 | 2.24e-69 | 219 |
| Msa1010000 | AT5G16030.2 | 54.941 | 253 | 86 | 10 | 14 | 242 | 4 | 252 | 7.14e-69 | 218 |
| Msa1010000 | AT3G02500.1 | 47.244 | 254 | 110 | 8 | 14 | 254 | 4 | 246 | 1.37e-60 | 195 |
| Msa1010000 | AT3G02500.3 | 46.667 | 255 | 111 | 8 | 14 | 254 | 4 | 247 | 3.17e-60 | 194 |
| Msa1010000 | AT3G02500.2 | 42.913 | 254 | 106 | 9 | 14 | 254 | 4 | 231 | 6.97e-48 | 162 |
| Msa1010000 | AT5G16030.5 | 52.761 | 163 | 56 | 6 | 98 | 242 | 2 | 161 | 1.28e-37 | 134 |
Find 78 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAATAATATTACCTTTA+AGG | 0.094228 | 7_1:+12494288 | None:intergenic |
| AAAAGTAATGTACCTTTAAA+AGG | 0.181978 | 7_1:+12494433 | None:intergenic |
| TCTTTCACCACTGCCCTTAA+AGG | 0.188324 | 7_1:-12494302 | Msa1010000:intron |
| TGTTTAGAGAAGTTTAATTT+TGG | 0.213095 | 7_1:-12490078 | Msa1010000:three_prime_UTR |
| AAAGAAAATGTAATAATTAA+AGG | 0.217046 | 7_1:-12490195 | Msa1010000:three_prime_UTR |
| TATATATGCAATCCACTTTC+AGG | 0.234776 | 7_1:-12493887 | Msa1010000:CDS |
| TTCGATTCCTTTCTTGATCT+TGG | 0.263763 | 7_1:+12490048 | None:intergenic |
| AATAATAATATTACCTTTAA+GGG | 0.264332 | 7_1:+12494289 | None:intergenic |
| TGTGTGACTCTTCTGAATTT+TGG | 0.264821 | 7_1:+12494851 | None:intergenic |
| GAATTTAATGCAAACCCTTC+TGG | 0.264923 | 7_1:+12493932 | None:intergenic |
| ATTTGTAGAGGTTTGAAAAT+AGG | 0.266378 | 7_1:+12494714 | None:intergenic |
| ATCTCTTCTTCTTGAACTAT+AGG | 0.274819 | 7_1:+12494624 | None:intergenic |
| TTGTCTTGAAAAGAAATTAT+AGG | 0.275895 | 7_1:+12494787 | None:intergenic |
| TCTCTTCTTCTTGAACTATA+GGG | 0.297403 | 7_1:+12494625 | None:intergenic |
| AAGCAACTTTGCAAGCAAAT+AGG | 0.298807 | 7_1:-12490319 | Msa1010000:CDS |
| TTGAGTTCATAACTCATTCA+TGG | 0.306645 | 7_1:-12494668 | Msa1010000:exon |
| TCTCTTAAATTTCCAATTCC+AGG | 0.312931 | 7_1:-12493716 | Msa1010000:intron |
| ATAGAAAAGTCAAGAGGAAT+TGG | 0.339726 | 7_1:-12489867 | Msa1010000:three_prime_UTR |
| AACAATTCTAGAAGGTATTC+AGG | 0.354558 | 7_1:-12494541 | Msa1010000:CDS |
| AAAGCATATGAACCTGGAAT+TGG | 0.366715 | 7_1:+12493704 | None:intergenic |
| TCTTCATGTGTGTAAATTGA+TGG | 0.384210 | 7_1:+12493743 | None:intergenic |
| AGCAACTTTGCAAGCAAATA+GGG | 0.387007 | 7_1:-12490318 | Msa1010000:CDS |
| GGGATATGATTCAGCATTGT+AGG | 0.390690 | 7_1:+12494645 | None:intergenic |
| AAGAAAATGTAATAATTAAA+GGG | 0.415042 | 7_1:-12490194 | Msa1010000:three_prime_UTR |
| TCTGTTTGTTGAGTTTCTAA+AGG | 0.440742 | 7_1:+12493817 | None:intergenic |
| ACACTCTCTTCTTAGAACTT+TGG | 0.443499 | 7_1:-12494819 | Msa1010000:five_prime_UTR |
| CAAGGGTAAGCTATAACAGC+TGG | 0.460189 | 7_1:-12493967 | Msa1010000:CDS |
| TGAAGAAGCAGTACTAGAAA+TGG | 0.463289 | 7_1:+12494465 | None:intergenic |
| TTGGAATTATGATCAATAGA+AGG | 0.467251 | 7_1:-12489848 | Msa1010000:three_prime_UTR |
| AGAGTAACAACAATTCTAGA+AGG | 0.470000 | 7_1:-12494549 | Msa1010000:CDS |
| TCTAGTACTGCTTCTTCACC+TGG | 0.472912 | 7_1:-12494460 | Msa1010000:CDS |
| GTAATAATTAAAGGGAGAGT+AGG | 0.473203 | 7_1:-12490186 | Msa1010000:three_prime_UTR |
| TGCCAACGTGAATACTTTGT+TGG | 0.484482 | 7_1:+12489987 | None:intergenic |
| AGAGGTTTGAAAATAGGTGT+TGG | 0.489540 | 7_1:+12494720 | None:intergenic |
| ATGATGGATGGAGTTGAAGT+AGG | 0.491118 | 7_1:+12493296 | None:intergenic |
| ATTGGTACCTCTCCTGAAAG+TGG | 0.491756 | 7_1:+12493875 | None:intergenic |
| AATATTACCTTTAAGGGCAG+TGG | 0.498396 | 7_1:+12494295 | None:intergenic |
| GTGGTGAAAGAATATGTAGA+AGG | 0.499571 | 7_1:+12494314 | None:intergenic |
| TTTGCTGATAAACATTCCAT+TGG | 0.503270 | 7_1:+12493857 | None:intergenic |
| AAAGTAATGTACCTTTAAAA+GGG | 0.508301 | 7_1:+12494434 | None:intergenic |
| AGAGGGAATGACAAGAGATG+TGG | 0.508546 | 7_1:-12493363 | Msa1010000:CDS |
| TTTAACCTCTCTATGATGGA+TGG | 0.516217 | 7_1:+12493284 | None:intergenic |
| GTACCTTTAAAAGGGTATCC+AGG | 0.521359 | 7_1:+12494442 | None:intergenic |
| TTCATACAGCATTACAAGCA+AGG | 0.534612 | 7_1:-12493985 | Msa1010000:intron |
| CTATGCAGAAAAGAAGAAAG+AGG | 0.536699 | 7_1:-12493381 | Msa1010000:intron |
| CTTTGTTGTGGAATTTGTAG+AGG | 0.540650 | 7_1:+12494702 | None:intergenic |
| GAGTAGGTTTGAATGAATGA+TGG | 0.542220 | 7_1:-12490170 | Msa1010000:three_prime_UTR |
| GGTTTGAAAATAGGTGTTGG+AGG | 0.543055 | 7_1:+12494723 | None:intergenic |
| AGACTCACCAAGATCAAGAA+AGG | 0.544503 | 7_1:-12490055 | Msa1010000:three_prime_UTR |
| AAAGAGTAGAATCTTTGTTG+TGG | 0.545864 | 7_1:+12494690 | None:intergenic |
| TGATGGATGGAGTTGAAGTA+GGG | 0.547063 | 7_1:+12493297 | None:intergenic |
| TGAAAGATCATTATGAAACA+TGG | 0.556613 | 7_1:-12490384 | Msa1010000:CDS |
| GATGGAGTTGAAGTAGGGCT+AGG | 0.557032 | 7_1:+12493302 | None:intergenic |
| GAGGGAATGACAAGAGATGT+GGG | 0.562323 | 7_1:-12493362 | Msa1010000:CDS |
| TGGGAGTGTTTATCTCCAGA+AGG | 0.567952 | 7_1:-12493947 | Msa1010000:CDS |
| ATCTTCGAAGTGCAATGACA+TGG | 0.570183 | 7_1:+12494890 | None:intergenic |
| TTTGCATTTGAATTTGAACT+AGG | 0.572177 | 7_1:+12493242 | None:intergenic |
| GGACTGCTTGAACTAAGATA+AGG | 0.574582 | 7_1:+12493323 | None:intergenic |
| CAAAGTATTCACGTTGGCAG+CGG | 0.577196 | 7_1:-12489983 | Msa1010000:three_prime_UTR |
| TCATACAGCATTACAAGCAA+GGG | 0.583811 | 7_1:-12493984 | Msa1010000:intron |
| GGGAGTGTTTATCTCCAGAA+GGG | 0.584047 | 7_1:-12493946 | Msa1010000:CDS |
| CTTGAAATAGAAAAGTCAAG+AGG | 0.585793 | 7_1:-12489873 | Msa1010000:three_prime_UTR |
| GGTGCAAATAGTGACTAGAA+AGG | 0.588019 | 7_1:+12494744 | None:intergenic |
| GAAAGATCATTATGAAACAT+GGG | 0.602826 | 7_1:-12490383 | Msa1010000:CDS |
| TATGCAGAAAAGAAGAAAGA+GGG | 0.610950 | 7_1:-12493380 | Msa1010000:intron |
| CTGCTTGAACTAAGATAAGG+AGG | 0.612198 | 7_1:+12493326 | None:intergenic |
| ACTGATCAACCAACTTTAGT+CGG | 0.615528 | 7_1:-12489916 | Msa1010000:three_prime_UTR |
| TGGTGAAAGAATATGTAGAA+GGG | 0.619465 | 7_1:+12494315 | None:intergenic |
| TGTCTTGCAGAATAAACAAG+AGG | 0.624414 | 7_1:+12493779 | None:intergenic |
| GGTTTGCATTAAATTCAAAG+TGG | 0.634839 | 7_1:-12493925 | Msa1010000:CDS |
| AAGGGTAAGCTATAACAGCT+GGG | 0.638858 | 7_1:-12493966 | Msa1010000:CDS |
| ACTTTCAGGAGAGGTACCAA+TGG | 0.645021 | 7_1:-12493873 | Msa1010000:CDS |
| GACTAATATCCACAAAAGTG+TGG | 0.645848 | 7_1:+12489951 | None:intergenic |
| CAACTCCATCCATCATAGAG+AGG | 0.653040 | 7_1:-12493289 | Msa1010000:CDS |
| ATGCAATCCACTTTCAGGAG+AGG | 0.654107 | 7_1:-12493882 | Msa1010000:CDS |
| GAAGCTTTAGAGAAGATACA+AGG | 0.659098 | 7_1:-12494507 | Msa1010000:CDS |
| CACCAACAAAGTATTCACGT+TGG | 0.680946 | 7_1:-12489989 | Msa1010000:three_prime_UTR |
| AGGGAATGACAAGAGATGTG+GGG | 0.701802 | 7_1:-12493361 | Msa1010000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATATTACCTTTAA+GGG | + | chr7_1:12490457-12490476 | None:intergenic | 10.0% |
| !! | AAATAATAATATTACCTTTA+AGG | + | chr7_1:12490458-12490477 | None:intergenic | 10.0% |
| !! | AAAGAAAATTATATATATGA+CGG | + | chr7_1:12493679-12493698 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAGTAACAA+CGG | + | chr7_1:12494123-12494142 | None:intergenic | 10.0% |
| !! | ATTCAAAAAAATTCTATAAT+TGG | + | chr7_1:12494264-12494283 | None:intergenic | 10.0% |
| !! | AAAGAAAATGTAATAATTAA+AGG | - | chr7_1:12494548-12494567 | Msa1010000:CDS | 10.0% |
| !! | AAGAAAATGTAATAATTAAA+GGG | - | chr7_1:12494549-12494568 | Msa1010000:CDS | 10.0% |
| !! | AATTCATAAAAGTCAAATAA+AGG | + | chr7_1:12491731-12491750 | None:intergenic | 15.0% |
| !!! | TTGATCTGAATTTTTTTTTT+TGG | + | chr7_1:12492049-12492068 | None:intergenic | 15.0% |
| !!! | TTCAATTTTCATATGAATTT+TGG | + | chr7_1:12492124-12492143 | None:intergenic | 15.0% |
| !! | TATACTATTCATTCATTATT+AGG | - | chr7_1:12493182-12493201 | Msa1010000:intron | 15.0% |
| !! | GTTTATATAATACGAATTAT+TGG | - | chr7_1:12493568-12493587 | Msa1010000:intron | 15.0% |
| !! | AAGAAAATTATATATATGAC+GGG | + | chr7_1:12493678-12493697 | None:intergenic | 15.0% |
| !! | AAAAAAAATCATAAATTAGC+TGG | - | chr7_1:12494027-12494046 | Msa1010000:intron | 15.0% |
| !! | TTGTCTTGAAAAGAAATTAT+AGG | + | chr7_1:12489959-12489978 | None:intergenic | 20.0% |
| !!! | AAAGTAATGTACCTTTAAAA+GGG | + | chr7_1:12490312-12490331 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTACCTTTAAA+AGG | + | chr7_1:12490313-12490332 | None:intergenic | 20.0% |
| !!! | CTATATAGTTTGAGTTAAAA+TGG | + | chr7_1:12490338-12490357 | None:intergenic | 20.0% |
| !! | TATATAGTTCATGAATTTCA+TGG | - | chr7_1:12490351-12490370 | Msa1010000:CDS | 20.0% |
| !!! | ATAATTTTGCTGCAATATAA+AGG | + | chr7_1:12490574-12490593 | None:intergenic | 20.0% |
| !! | TTTATATTGCAGCAAAATTA+TGG | - | chr7_1:12490573-12490592 | Msa1010000:intron | 20.0% |
| !! | AACTTTGTGGATAAATTAAA+TGG | - | chr7_1:12490731-12490750 | Msa1010000:intron | 20.0% |
| !! | AATAAGCTAGAAACAATTTA+TGG | + | chr7_1:12491178-12491197 | None:intergenic | 20.0% |
| !! | AACAGATACTAAAATGTTTA+AGG | + | chr7_1:12491624-12491643 | None:intergenic | 20.0% |
| !! | TAGATTACAACATTATAATG+TGG | - | chr7_1:12492210-12492229 | Msa1010000:intron | 20.0% |
| !! | AGATTACAACATTATAATGT+GGG | - | chr7_1:12492211-12492230 | Msa1010000:intron | 20.0% |
| !!! | TTTTGAAATTTCTCATCAAA+TGG | + | chr7_1:12492437-12492456 | None:intergenic | 20.0% |
| !!! | CAAAACAAATTTTGTTCAAT+TGG | + | chr7_1:12492605-12492624 | None:intergenic | 20.0% |
| !!! | TTTCCTAGTTTTTACTAAAT+CGG | - | chr7_1:12492641-12492660 | Msa1010000:intron | 20.0% |
| !! | ATATTATGCTATATACAAAG+TGG | + | chr7_1:12493242-12493261 | None:intergenic | 20.0% |
| !! | CTATTCTATGATGTTATTAT+TGG | + | chr7_1:12493285-12493304 | None:intergenic | 20.0% |
| !! | TAAAATATAAAAGACAGAAG+AGG | + | chr7_1:12493514-12493533 | None:intergenic | 20.0% |
| !! | TCTTAAAATCCAAACAAATT+AGG | - | chr7_1:12493592-12493611 | Msa1010000:intron | 20.0% |
| !! | TGCAATTTAAAAAATTCAGA+TGG | + | chr7_1:12493744-12493763 | None:intergenic | 20.0% |
| !!! | TGTTTAGAGAAGTTTAATTT+TGG | - | chr7_1:12494665-12494684 | Msa1010000:exon | 20.0% |
| ! | ATTTGTAGAGGTTTGAAAAT+AGG | + | chr7_1:12490032-12490051 | None:intergenic | 25.0% |
| !!! | CAGATTTTAATTTGAGAGAA+TGG | - | chr7_1:12490146-12490165 | Msa1010000:three_prime_UTR | 25.0% |
| ! | AAAAGGCGAAAGAATAATAA+AGG | - | chr7_1:12490486-12490505 | Msa1010000:intron | 25.0% |
| ! | CAGCAAAATTATGGAAAATA+TGG | - | chr7_1:12490582-12490601 | Msa1010000:intron | 25.0% |
| ! | CCTCAAAATTCTTTATATTC+CGG | - | chr7_1:12490635-12490654 | Msa1010000:intron | 25.0% |
| !!! | TATTTTTGGTCTAAACTTTG+TGG | - | chr7_1:12490718-12490737 | Msa1010000:intron | 25.0% |
| !!! | AATTGTTTCTAGCTTATTTC+TGG | - | chr7_1:12491180-12491199 | Msa1010000:intron | 25.0% |
| ! | TTTGCATTTGAATTTGAACT+AGG | + | chr7_1:12491504-12491523 | None:intergenic | 25.0% |
| ! | AAATGCAAAAACAAAATCTG+AGG | - | chr7_1:12491515-12491534 | Msa1010000:intron | 25.0% |
| ! | ATAATTCAGTGTAATCATAG+AGG | + | chr7_1:12491824-12491843 | None:intergenic | 25.0% |
| !!! | TACTTTATTTTTACAGACAC+CGG | + | chr7_1:12491976-12491995 | None:intergenic | 25.0% |
| !!! | CTTTGTTATTTTCTGTTGTT+TGG | - | chr7_1:12492000-12492019 | Msa1010000:intron | 25.0% |
| !! | TGCAAAATTTTCAAACCAAA+AGG | - | chr7_1:12492094-12492113 | Msa1010000:intron | 25.0% |
| !!! | ATGAATTTTGGAATTCCTTT+TGG | + | chr7_1:12492112-12492131 | None:intergenic | 25.0% |
| !! | AAGATTTGATTCTTTTGTCT+TGG | + | chr7_1:12492177-12492196 | None:intergenic | 25.0% |
| ! | GATTACAACATTATAATGTG+GGG | - | chr7_1:12492212-12492231 | Msa1010000:intron | 25.0% |
| ! | CATCCAAAAAGAAAAAAAAG+TGG | - | chr7_1:12492406-12492425 | Msa1010000:intron | 25.0% |
| ! | TTTACTAAATCGGCATTTAT+TGG | - | chr7_1:12492651-12492670 | Msa1010000:intron | 25.0% |
| ! | TTACTAAATCGGCATTTATT+GGG | - | chr7_1:12492652-12492671 | Msa1010000:intron | 25.0% |
| !!! | TTTTGAAGTGAACTTTTGAA+TGG | + | chr7_1:12492805-12492824 | None:intergenic | 25.0% |
| ! | GAAAATTGAATCATTGAAGA+GGG | + | chr7_1:12493014-12493033 | None:intergenic | 25.0% |
| ! | TGAAAATTGAATCATTGAAG+AGG | + | chr7_1:12493015-12493034 | None:intergenic | 25.0% |
| !!! | AAGTACAACATTTTTTCATC+AGG | - | chr7_1:12493121-12493140 | Msa1010000:intron | 25.0% |
| !!! | AGTACAACATTTTTTCATCA+GGG | - | chr7_1:12493122-12493141 | Msa1010000:intron | 25.0% |
| ! | ATTATTAGGACCATATACAA+AGG | - | chr7_1:12493196-12493215 | Msa1010000:intron | 25.0% |
| ! | ATGTTATTATTGGTGAGATA+AGG | + | chr7_1:12493275-12493294 | None:intergenic | 25.0% |
| ! | GAATAGTCACATTAAACAAA+TGG | - | chr7_1:12493299-12493318 | Msa1010000:CDS | 25.0% |
| !! | AATTATATATATGACGGGAA+TGG | + | chr7_1:12493673-12493692 | None:intergenic | 25.0% |
| ! | TTGTAATGAACTAGTACTAA+TGG | + | chr7_1:12493870-12493889 | None:intergenic | 25.0% |
| ! | TACACTCATATAGATGAAAT+TGG | - | chr7_1:12493893-12493912 | Msa1010000:CDS | 25.0% |
| ! | AATTTCATCTATATCGAACA+TGG | + | chr7_1:12493985-12494004 | None:intergenic | 25.0% |
| ! | GATGAAATTCGTTTACAATT+AGG | - | chr7_1:12493996-12494015 | Msa1010000:intron | 25.0% |
| ! | TGAAAGATCATTATGAAACA+TGG | - | chr7_1:12494359-12494378 | Msa1010000:intron | 25.0% |
| ! | GAAAGATCATTATGAAACAT+GGG | - | chr7_1:12494360-12494379 | Msa1010000:intron | 25.0% |
| !! | TTTTTCACTTATCACTTCAA+AGG | - | chr7_1:12494519-12494538 | Msa1010000:CDS | 25.0% |
| !! | TTTTCACTTATCACTTCAAA+GGG | - | chr7_1:12494520-12494539 | Msa1010000:CDS | 25.0% |
| !! | AAAAAAATACCGACTAAAGT+TGG | + | chr7_1:12494839-12494858 | None:intergenic | 25.0% |
| ! | TTGGAATTATGATCAATAGA+AGG | - | chr7_1:12494895-12494914 | Msa1010000:five_prime_UTR | 25.0% |
| !!! | AGAAAGGTTTTTTAGAGTGA+AGG | + | chr7_1:12489986-12490005 | None:intergenic | 30.0% |
| AAAGAGTAGAATCTTTGTTG+TGG | + | chr7_1:12490056-12490075 | None:intergenic | 30.0% | |
| TTGAGTTCATAACTCATTCA+TGG | - | chr7_1:12490075-12490094 | Msa1010000:three_prime_UTR | 30.0% | |
| TCTCTTCTTCTTGAACTATA+GGG | + | chr7_1:12490121-12490140 | None:intergenic | 30.0% | |
| ATCTCTTCTTCTTGAACTAT+AGG | + | chr7_1:12490122-12490141 | None:intergenic | 30.0% | |
| AGAGTAACAACAATTCTAGA+AGG | - | chr7_1:12490194-12490213 | Msa1010000:three_prime_UTR | 30.0% | |
| !! | AACAATTCTAGAAGGTATTC+AGG | - | chr7_1:12490202-12490221 | Msa1010000:exon | 30.0% |
| TGGTGAAAGAATATGTAGAA+GGG | + | chr7_1:12490431-12490450 | None:intergenic | 30.0% | |
| ! | CATGATTCTAGTTAACAATG+TGG | + | chr7_1:12490519-12490538 | None:intergenic | 30.0% |
| CACATTGTTAACTAGAATCA+TGG | - | chr7_1:12490517-12490536 | Msa1010000:intron | 30.0% | |
| !!! | ATGGTTTTAAATTGCGATTG+CGG | - | chr7_1:12490536-12490555 | Msa1010000:intron | 30.0% |
| ! | CCGGAATATAAAGAATTTTG+AGG | + | chr7_1:12490638-12490657 | None:intergenic | 30.0% |
| GGTTTGCATTAAATTCAAAG+TGG | - | chr7_1:12490818-12490837 | Msa1010000:intron | 30.0% | |
| TATATATGCAATCCACTTTC+AGG | - | chr7_1:12490856-12490875 | Msa1010000:intron | 30.0% | |
| TTTGCTGATAAACATTCCAT+TGG | + | chr7_1:12490889-12490908 | None:intergenic | 30.0% | |
| TTATCAGCAAAAACTCTTAG+TGG | - | chr7_1:12490898-12490917 | Msa1010000:intron | 30.0% | |
| ! | TCTGTTTGTTGAGTTTCTAA+AGG | + | chr7_1:12490929-12490948 | None:intergenic | 30.0% |
| TCTTCATGTGTGTAAATTGA+TGG | + | chr7_1:12491003-12491022 | None:intergenic | 30.0% | |
| TCTCTTAAATTTCCAATTCC+AGG | - | chr7_1:12491027-12491046 | Msa1010000:intron | 30.0% | |
| TTTGATTCCCAATTCTACTT+CGG | - | chr7_1:12491060-12491079 | Msa1010000:intron | 30.0% | |
| TAAATAAGTCAATCCGAACA+TGG | + | chr7_1:12491086-12491105 | None:intergenic | 30.0% | |
| TATGCAGAAAAGAAGAAAGA+GGG | - | chr7_1:12491363-12491382 | Msa1010000:intron | 30.0% | |
| ! | AGTTTTTAACCTCTCTATGA+TGG | + | chr7_1:12491466-12491485 | None:intergenic | 30.0% |
| AAAAACAAAATCTGAGGAAG+AGG | - | chr7_1:12491521-12491540 | Msa1010000:intron | 30.0% | |
| ATGAATTTGATTAAGTGCAC+AGG | - | chr7_1:12491919-12491938 | Msa1010000:intron | 30.0% | |
| !!! | TTTTTTTCACTAAGAGTTGC+TGG | - | chr7_1:12492380-12492399 | Msa1010000:intron | 30.0% |
| !!! | CAGCCACTTTTTTTTCTTTT+TGG | + | chr7_1:12492412-12492431 | None:intergenic | 30.0% |
| CAAAAAGAAAAAAAAGTGGC+TGG | - | chr7_1:12492410-12492429 | Msa1010000:intron | 30.0% | |
| TAACTCTTTAGACAATTGCT+AGG | - | chr7_1:12492458-12492477 | Msa1010000:intron | 30.0% | |
| AACTCTTTAGACAATTGCTA+GGG | - | chr7_1:12492459-12492478 | Msa1010000:intron | 30.0% | |
| !! | ATGCCGATTTAGTAAAAACT+AGG | + | chr7_1:12492647-12492666 | None:intergenic | 30.0% |
| !!! | GTACAACATTTTTTCATCAG+GGG | - | chr7_1:12493123-12493142 | Msa1010000:intron | 30.0% |
| ! | ATCCTTTAAAGGAGAATATC+AGG | + | chr7_1:12493348-12493367 | None:intergenic | 30.0% |
| CACATAGCATTATCCTTTAA+AGG | + | chr7_1:12493359-12493378 | None:intergenic | 30.0% | |
| !! | GTGCTCATTTTTCTTTTCAT+AGG | - | chr7_1:12493453-12493472 | Msa1010000:intron | 30.0% |
| !! | GTGTTTCTACCTAATTTGTT+TGG | + | chr7_1:12493604-12493623 | None:intergenic | 30.0% |
| CTGATCTATGCTTAATCTAT+TGG | + | chr7_1:12493830-12493849 | None:intergenic | 30.0% | |
| CAATAGATTAAGCATAGATC+AGG | - | chr7_1:12493828-12493847 | Msa1010000:CDS | 30.0% | |
| ! | TCTACATTTTACAGTTGTAG+AGG | - | chr7_1:12493957-12493976 | Msa1010000:CDS | 30.0% |
| ! | TGTCTCTAAATTTTGTGATG+AGG | - | chr7_1:12494073-12494092 | Msa1010000:intron | 30.0% |
| ! | GTCTCTAAATTTTGTGATGA+GGG | - | chr7_1:12494074-12494093 | Msa1010000:intron | 30.0% |
| ! | AAATTTTGTGATGAGGGAAT+TGG | - | chr7_1:12494080-12494099 | Msa1010000:intron | 30.0% |
| ATGAACCTTGAAACTACATT+TGG | - | chr7_1:12494151-12494170 | Msa1010000:intron | 30.0% | |
| TGAACCTTGAAACTACATTT+GGG | - | chr7_1:12494152-12494171 | Msa1010000:intron | 30.0% | |
| AATTACACATGATTGAGATG+AGG | - | chr7_1:12494218-12494237 | Msa1010000:intron | 30.0% | |
| AGACAAAAAGAGAAAAGAGT+GGG | - | chr7_1:12494383-12494402 | Msa1010000:intron | 30.0% | |
| GAAGTGATAAGTGAAAAAGA+TGG | + | chr7_1:12494517-12494536 | None:intergenic | 30.0% | |
| GTAATAATTAAAGGGAGAGT+AGG | - | chr7_1:12494557-12494576 | Msa1010000:CDS | 30.0% | |
| !!! | TGAGCTATTTTTGAAATGCT+TGG | - | chr7_1:12494627-12494646 | Msa1010000:CDS | 30.0% |
| ! | TAGTTAAATCCACACTTTTG+TGG | - | chr7_1:12494783-12494802 | Msa1010000:five_prime_UTR | 30.0% |
| CTTGAAATAGAAAAGTCAAG+AGG | - | chr7_1:12494870-12494889 | Msa1010000:five_prime_UTR | 30.0% | |
| ATAGAAAAGTCAAGAGGAAT+TGG | - | chr7_1:12494876-12494895 | Msa1010000:five_prime_UTR | 30.0% | |
| ! | TGTGTGACTCTTCTGAATTT+TGG | + | chr7_1:12489895-12489914 | None:intergenic | 35.0% |
| ACACTCTCTTCTTAGAACTT+TGG | - | chr7_1:12489924-12489943 | Msa1010000:three_prime_UTR | 35.0% | |
| AGAGGTTTGAAAATAGGTGT+TGG | + | chr7_1:12490026-12490045 | None:intergenic | 35.0% | |
| ! | CTTTGTTGTGGAATTTGTAG+AGG | + | chr7_1:12490044-12490063 | None:intergenic | 35.0% |
| !! | GAAGCTTTAGAGAAGATACA+AGG | - | chr7_1:12490236-12490255 | Msa1010000:CDS | 35.0% |
| TGAAGAAGCAGTACTAGAAA+TGG | + | chr7_1:12490281-12490300 | None:intergenic | 35.0% | |
| GTGGTGAAAGAATATGTAGA+AGG | + | chr7_1:12490432-12490451 | None:intergenic | 35.0% | |
| ! | AATATTACCTTTAAGGGCAG+TGG | + | chr7_1:12490451-12490470 | None:intergenic | 35.0% |
| TTTAAATTGCAGTCTGCAAC+CGG | + | chr7_1:12490657-12490676 | None:intergenic | 35.0% | |
| TTCATACAGCATTACAAGCA+AGG | - | chr7_1:12490758-12490777 | Msa1010000:intron | 35.0% | |
| TCATACAGCATTACAAGCAA+GGG | - | chr7_1:12490759-12490778 | Msa1010000:intron | 35.0% | |
| GAATTTAATGCAAACCCTTC+TGG | + | chr7_1:12490814-12490833 | None:intergenic | 35.0% | |
| TGTCTTGCAGAATAAACAAG+AGG | + | chr7_1:12490967-12490986 | None:intergenic | 35.0% | |
| AAAGCATATGAACCTGGAAT+TGG | + | chr7_1:12491042-12491061 | None:intergenic | 35.0% | |
| ! | GAATCAAAAGCATATGAACC+TGG | + | chr7_1:12491048-12491067 | None:intergenic | 35.0% |
| CTATGCAGAAAAGAAGAAAG+AGG | - | chr7_1:12491362-12491381 | Msa1010000:intron | 35.0% | |
| ! | TTTAACCTCTCTATGATGGA+TGG | + | chr7_1:12491462-12491481 | None:intergenic | 35.0% |
| ! | GTTTTTACTGTGTATGTGAG+TGG | + | chr7_1:12491672-12491691 | None:intergenic | 35.0% |
| TTAAAGCACAGACACAAACA+CGG | + | chr7_1:12491900-12491919 | None:intergenic | 35.0% | |
| ! | TCTAGGACACAAGAAATTTC+CGG | - | chr7_1:12491954-12491973 | Msa1010000:intron | 35.0% |
| ! | AAATTGAACTAGTCTACCCT+TGG | - | chr7_1:12492136-12492155 | Msa1010000:intron | 35.0% |
| GAAACAAAGAGGGACAAAAT+TGG | + | chr7_1:12492250-12492269 | None:intergenic | 35.0% | |
| GCTTTCACATGAAACAAAGA+GGG | + | chr7_1:12492260-12492279 | None:intergenic | 35.0% | |
| ACCAAAAACTATAGAAGGAG+GGG | + | chr7_1:12492282-12492301 | None:intergenic | 35.0% | |
| GACCAAAAACTATAGAAGGA+GGG | + | chr7_1:12492283-12492302 | None:intergenic | 35.0% | |
| !! | TGATAGGAGGAAAGTATTGA+GGG | + | chr7_1:12492305-12492324 | None:intergenic | 35.0% |
| CACCTTTATGTAGAAGTTGA+GGG | - | chr7_1:12492538-12492557 | Msa1010000:intron | 35.0% | |
| AAGTCATTGTTTCAACGGTA+GGG | + | chr7_1:12492574-12492593 | None:intergenic | 35.0% | |
| CGATCAAGTCATTGTTTCAA+CGG | + | chr7_1:12492579-12492598 | None:intergenic | 35.0% | |
| CGTTGAAACAATGACTTGAT+CGG | - | chr7_1:12492577-12492596 | Msa1010000:intron | 35.0% | |
| ! | AAGTGAACTTTTGAATGGAG+AGG | + | chr7_1:12492800-12492819 | None:intergenic | 35.0% |
| GTGACTTCAAATGAGACAAA+GGG | + | chr7_1:12493085-12493104 | None:intergenic | 35.0% | |
| AGTGACTTCAAATGAGACAA+AGG | + | chr7_1:12493086-12493105 | None:intergenic | 35.0% | |
| TAAGTCCACTCCTTTGTATA+TGG | + | chr7_1:12493209-12493228 | None:intergenic | 35.0% | |
| ! | CTTTAAAGGAGAATATCAGG+AGG | + | chr7_1:12493345-12493364 | None:intergenic | 35.0% |
| CTCCTGATATTCTCCTTTAA+AGG | - | chr7_1:12493343-12493362 | Msa1010000:CDS | 35.0% | |
| ACATTGTGACTCTGTTGTAT+TGG | - | chr7_1:12493482-12493501 | Msa1010000:intron | 35.0% | |
| CCATTTCTCTCTAGATTCAA+CGG | - | chr7_1:12493932-12493951 | Msa1010000:CDS | 35.0% | |
| CTAACCCAAATGTAGTTTCA+AGG | + | chr7_1:12494159-12494178 | None:intergenic | 35.0% | |
| !! | GAAACTACATTTGGGTTAGT+TGG | - | chr7_1:12494160-12494179 | Msa1010000:intron | 35.0% |
| GAGACAAAAAGAGAAAAGAG+TGG | - | chr7_1:12494382-12494401 | Msa1010000:intron | 35.0% | |
| AAGCAACTTTGCAAGCAAAT+AGG | - | chr7_1:12494424-12494443 | Msa1010000:intron | 35.0% | |
| AGCAACTTTGCAAGCAAATA+GGG | - | chr7_1:12494425-12494444 | Msa1010000:intron | 35.0% | |
| GAGTAGGTTTGAATGAATGA+TGG | - | chr7_1:12494573-12494592 | Msa1010000:CDS | 35.0% | |
| TTCGATTCCTTTCTTGATCT+TGG | + | chr7_1:12494698-12494717 | None:intergenic | 35.0% | |
| GACTAATATCCACAAAAGTG+TGG | + | chr7_1:12494795-12494814 | None:intergenic | 35.0% | |
| ACTGATCAACCAACTTTAGT+CGG | - | chr7_1:12494827-12494846 | Msa1010000:five_prime_UTR | 35.0% | |
| ATCTTCGAAGTGCAATGACA+TGG | + | chr7_1:12489856-12489875 | None:intergenic | 40.0% | |
| GGTGCAAATAGTGACTAGAA+AGG | + | chr7_1:12490002-12490021 | None:intergenic | 40.0% | |
| !! | GGTTTGAAAATAGGTGTTGG+AGG | + | chr7_1:12490023-12490042 | None:intergenic | 40.0% |
| GGGATATGATTCAGCATTGT+AGG | + | chr7_1:12490101-12490120 | None:intergenic | 40.0% | |
| ! | TCACCTGGATACCCTTTTAA+AGG | - | chr7_1:12490298-12490317 | Msa1010000:CDS | 40.0% |
| !! | GTACCTTTAAAAGGGTATCC+AGG | + | chr7_1:12490304-12490323 | None:intergenic | 40.0% |
| !!! | GAATTTTGAGGTCTCTGCAA+CGG | + | chr7_1:12490626-12490645 | None:intergenic | 40.0% |
| TAAGCACGCTATTCTAGTCT+TGG | + | chr7_1:12490681-12490700 | None:intergenic | 40.0% | |
| AAGGGTAAGCTATAACAGCT+GGG | - | chr7_1:12490777-12490796 | Msa1010000:intron | 40.0% | |
| AACATGGCCGAAGTAGAATT+GGG | + | chr7_1:12491070-12491089 | None:intergenic | 40.0% | |
| AATTCTACTTCGGCCATGTT+CGG | - | chr7_1:12491070-12491089 | Msa1010000:intron | 40.0% | |
| !! | TCTAGCTTATTTCTGGTAGC+CGG | - | chr7_1:12491187-12491206 | Msa1010000:intron | 40.0% |
| !! | GTTGTTTTCGTAAGCTATCC+TGG | + | chr7_1:12491220-12491239 | None:intergenic | 40.0% |
| CTGCTTGAACTAAGATAAGG+AGG | + | chr7_1:12491420-12491439 | None:intergenic | 40.0% | |
| GGACTGCTTGAACTAAGATA+AGG | + | chr7_1:12491423-12491442 | None:intergenic | 40.0% | |
| ! | TGATGGATGGAGTTGAAGTA+GGG | + | chr7_1:12491449-12491468 | None:intergenic | 40.0% |
| !! | ATGATGGATGGAGTTGAAGT+AGG | + | chr7_1:12491450-12491469 | None:intergenic | 40.0% |
| AATGAAGCACAGAAACTCCT+TGG | - | chr7_1:12491753-12491772 | Msa1010000:intron | 40.0% | |
| TGTAATCATAGAGGCAGTGT+CGG | + | chr7_1:12491815-12491834 | None:intergenic | 40.0% | |
| TGTCTTGGAAAACACACCAT+TGG | + | chr7_1:12492162-12492181 | None:intergenic | 40.0% | |
| GGCTTTCACATGAAACAAAG+AGG | + | chr7_1:12492261-12492280 | None:intergenic | 40.0% | |
| GGACCAAAAACTATAGAAGG+AGG | + | chr7_1:12492284-12492303 | None:intergenic | 40.0% | |
| GAGGGACCAAAAACTATAGA+AGG | + | chr7_1:12492287-12492306 | None:intergenic | 40.0% | |
| !! | CTGATAGGAGGAAAGTATTG+AGG | + | chr7_1:12492306-12492325 | None:intergenic | 40.0% |
| TGACCAGAAAACAGACTGAT+AGG | + | chr7_1:12492321-12492340 | None:intergenic | 40.0% | |
| CCTCAACTTCTACATAAAGG+TGG | + | chr7_1:12492540-12492559 | None:intergenic | 40.0% | |
| CCACCTTTATGTAGAAGTTG+AGG | - | chr7_1:12492537-12492556 | Msa1010000:intron | 40.0% | |
| GACCCTCAACTTCTACATAA+AGG | + | chr7_1:12492543-12492562 | None:intergenic | 40.0% | |
| CAAGTCATTGTTTCAACGGT+AGG | + | chr7_1:12492575-12492594 | None:intergenic | 40.0% | |
| ACACCATGAGCTACTACTTA+CGG | - | chr7_1:12492702-12492721 | Msa1010000:intron | 40.0% | |
| GTGTCTCATATGATCTACTG+CGG | + | chr7_1:12492778-12492797 | None:intergenic | 40.0% | |
| TAGGACCATATACAAAGGAG+TGG | - | chr7_1:12493201-12493220 | Msa1010000:intron | 40.0% | |
| CCGTTGAATCTAGAGAGAAA+TGG | + | chr7_1:12493935-12493954 | None:intergenic | 40.0% | |
| CAAAAAGAGAAAAGAGTGGG+TGG | - | chr7_1:12494386-12494405 | Msa1010000:intron | 40.0% | |
| !! | AGCAAATAGGGTGCTTTTCA+TGG | - | chr7_1:12494437-12494456 | Msa1010000:intron | 40.0% |
| AGACTCACCAAGATCAAGAA+AGG | - | chr7_1:12494688-12494707 | Msa1010000:five_prime_UTR | 40.0% | |
| ! | CACCAACAAAGTATTCACGT+TGG | - | chr7_1:12494754-12494773 | Msa1010000:five_prime_UTR | 40.0% |
| TGCCAACGTGAATACTTTGT+TGG | + | chr7_1:12494759-12494778 | None:intergenic | 40.0% | |
| TCTAGTACTGCTTCTTCACC+TGG | - | chr7_1:12490283-12490302 | Msa1010000:CDS | 45.0% | |
| TCTTTCACCACTGCCCTTAA+AGG | - | chr7_1:12490441-12490460 | Msa1010000:intron | 45.0% | |
| CAAGGGTAAGCTATAACAGC+TGG | - | chr7_1:12490776-12490795 | Msa1010000:intron | 45.0% | |
| !! | TGGGAGTGTTTATCTCCAGA+AGG | - | chr7_1:12490796-12490815 | Msa1010000:intron | 45.0% |
| !! | GGGAGTGTTTATCTCCAGAA+GGG | - | chr7_1:12490797-12490816 | Msa1010000:intron | 45.0% |
| ATGCAATCCACTTTCAGGAG+AGG | - | chr7_1:12490861-12490880 | Msa1010000:intron | 45.0% | |
| ATTGGTACCTCTCCTGAAAG+TGG | + | chr7_1:12490871-12490890 | None:intergenic | 45.0% | |
| !! | ACTTTCAGGAGAGGTACCAA+TGG | - | chr7_1:12490870-12490889 | Msa1010000:intron | 45.0% |
| GAACATGGCCGAAGTAGAAT+TGG | + | chr7_1:12491071-12491090 | None:intergenic | 45.0% | |
| AGAGGGAATGACAAGAGATG+TGG | - | chr7_1:12491380-12491399 | Msa1010000:intron | 45.0% | |
| GAGGGAATGACAAGAGATGT+GGG | - | chr7_1:12491381-12491400 | Msa1010000:intron | 45.0% | |
| AGGGAATGACAAGAGATGTG+GGG | - | chr7_1:12491382-12491401 | Msa1010000:intron | 45.0% | |
| CAACTCCATCCATCATAGAG+AGG | - | chr7_1:12491454-12491473 | Msa1010000:intron | 45.0% | |
| GCACAGAAACTCCTTGGATT+AGG | - | chr7_1:12491759-12491778 | Msa1010000:intron | 45.0% | |
| GATTAGGTGTGTCCTGGTAT+CGG | - | chr7_1:12491775-12491794 | Msa1010000:intron | 45.0% | |
| TTAAGTGCACAGGATACACC+AGG | - | chr7_1:12491929-12491948 | Msa1010000:intron | 45.0% | |
| TTTCTTGTGTCCTAGACTCC+TGG | + | chr7_1:12491950-12491969 | None:intergenic | 45.0% | |
| GAAAACACACCATTGGCCAA+GGG | + | chr7_1:12492155-12492174 | None:intergenic | 45.0% | |
| ! | GCCCCTCCTTCTATAGTTTT+TGG | - | chr7_1:12492278-12492297 | Msa1010000:intron | 45.0% |
| CCAGAAAACAGACTGATAGG+AGG | + | chr7_1:12492318-12492337 | None:intergenic | 45.0% | |
| ! | CCTCCTATCAGTCTGTTTTC+TGG | - | chr7_1:12492315-12492334 | Msa1010000:intron | 45.0% |
| ACTCGTCTTCACAACTGAGA+CGG | + | chr7_1:12492681-12492700 | None:intergenic | 45.0% | |
| TCTCCGTAAGTAGTAGCTCA+TGG | + | chr7_1:12492708-12492727 | None:intergenic | 45.0% | |
| TCTGTGTTCGTACTTCGAAC+GGG | + | chr7_1:12492843-12492862 | None:intergenic | 45.0% | |
| GTCTGTGTTCGTACTTCGAA+CGG | + | chr7_1:12492844-12492863 | None:intergenic | 45.0% | |
| TCGAAGTACGAACACAGACA+CGG | - | chr7_1:12492845-12492864 | Msa1010000:intron | 45.0% | |
| CACAAGTGTCTGTGTCGTAT+CGG | - | chr7_1:12492935-12492954 | Msa1010000:intron | 45.0% | |
| GTGTCAGTCACGATACATGT+CGG | - | chr7_1:12492957-12492976 | Msa1010000:intron | 45.0% | |
| !! | CTCTGATTGAAGGCGTGTTT+TGG | + | chr7_1:12492986-12493005 | None:intergenic | 45.0% |
| CAAAACACGCCTTCAATCAG+AGG | - | chr7_1:12492984-12493003 | Msa1010000:intron | 45.0% | |
| GAGAAATGGTGTAGTCGTAG+AGG | + | chr7_1:12493921-12493940 | None:intergenic | 45.0% | |
| GCATGACATTGATGTGAGAG+TGG | - | chr7_1:12494315-12494334 | Msa1010000:CDS | 45.0% | |
| ! | CAAAGTATTCACGTTGGCAG+CGG | - | chr7_1:12494760-12494779 | Msa1010000:five_prime_UTR | 45.0% |
| !!! | TTATTATTTTTTTTAGTAAA+AGG | - | chr7_1:12490469-12490488 | Msa1010000:intron | 5.0% |
| !!! | TTTCATATATTTTATATTTT+TGG | - | chr7_1:12490704-12490723 | Msa1010000:intron | 5.0% |
| AAGCTATCCTGGAGAGCTAC+CGG | + | chr7_1:12491209-12491228 | None:intergenic | 50.0% | |
| GATGGAGTTGAAGTAGGGCT+AGG | + | chr7_1:12491444-12491463 | None:intergenic | 50.0% | |
| ! | TCCTTGGATTAGGTGTGTCC+TGG | - | chr7_1:12491769-12491788 | Msa1010000:intron | 50.0% |
| ACCAGGACACACCTAATCCA+AGG | + | chr7_1:12491773-12491792 | None:intergenic | 50.0% | |
| ACAGGATACACCAGGAGTCT+AGG | - | chr7_1:12491937-12491956 | Msa1010000:intron | 50.0% | |
| ! | ACTAGTCTACCCTTGGCCAA+TGG | - | chr7_1:12492143-12492162 | Msa1010000:intron | 50.0% |
| GGAAAACACACCATTGGCCA+AGG | + | chr7_1:12492156-12492175 | None:intergenic | 50.0% | |
| GAGCTACTACTTACGGAGAG+TGG | - | chr7_1:12492709-12492728 | Msa1010000:intron | 50.0% | |
| GTACTTCGAACGGGAGAACT+AGG | + | chr7_1:12492834-12492853 | None:intergenic | 50.0% | |
| CTGACACAGACACGTCAACA+CGG | - | chr7_1:12492876-12492895 | Msa1010000:intron | 50.0% | |
| TGACACAGACACGTCAACAC+GGG | - | chr7_1:12492877-12492896 | Msa1010000:intron | 50.0% | |
| GAGGGAGAACCTCTGATTGA+AGG | + | chr7_1:12492996-12493015 | None:intergenic | 50.0% | |
| GAGAGTGGAAATGCATGTGC+AGG | - | chr7_1:12494330-12494349 | Msa1010000:intron | 50.0% | |
| GGAAATGCATGTGCAGGTTG+AGG | - | chr7_1:12494336-12494355 | Msa1010000:intron | 50.0% | |
| ATCAACGCGTGTCCGATACC+AGG | + | chr7_1:12491790-12491809 | None:intergenic | 55.0% | |
| ACGACACAGACACGCAGACA+CGG | + | chr7_1:12491868-12491887 | None:intergenic | 55.0% | |
| CTGCGTGTCTGTGTCGTGTT+CGG | - | chr7_1:12491871-12491890 | Msa1010000:intron | 55.0% | |
| CTGGTAGCCGGTAGCTCTCC+AGG | - | chr7_1:12491199-12491218 | Msa1010000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 12489801 | 12494964 | 12489801 | ID=Msa1010000;Name=Msa1010000 |
| chr7_1 | mRNA | 12489801 | 12494964 | 12489801 | ID=Msa1010000-mRNA-1;Parent=Msa1010000;Name=Msa1010000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=293|1|1|1|1|1|5|415|307 |
| chr7_1 | exon | 12489801 | 12490413 | 12489801 | ID=Msa1010000-mRNA-1:exon:3239;Parent=Msa1010000-mRNA-1 |
| chr7_1 | exon | 12493223 | 12493395 | 12493223 | ID=Msa1010000-mRNA-1:exon:3238;Parent=Msa1010000-mRNA-1 |
| chr7_1 | exon | 12493717 | 12493998 | 12493717 | ID=Msa1010000-mRNA-1:exon:3237;Parent=Msa1010000-mRNA-1 |
| chr7_1 | exon | 12494303 | 12494347 | 12494303 | ID=Msa1010000-mRNA-1:exon:3236;Parent=Msa1010000-mRNA-1 |
| chr7_1 | exon | 12494446 | 12494964 | 12494446 | ID=Msa1010000-mRNA-1:exon:3235;Parent=Msa1010000-mRNA-1 |
| chr7_1 | five_prime_UTR | 12494672 | 12494964 | 12494672 | ID=Msa1010000-mRNA-1:five_prime_utr;Parent=Msa1010000-mRNA-1 |
| chr7_1 | CDS | 12494446 | 12494671 | 12494446 | ID=Msa1010000-mRNA-1:cds;Parent=Msa1010000-mRNA-1 |
| chr7_1 | CDS | 12494303 | 12494347 | 12494303 | ID=Msa1010000-mRNA-1:cds;Parent=Msa1010000-mRNA-1 |
| chr7_1 | CDS | 12493717 | 12493998 | 12493717 | ID=Msa1010000-mRNA-1:cds;Parent=Msa1010000-mRNA-1 |
| chr7_1 | CDS | 12493223 | 12493395 | 12493223 | ID=Msa1010000-mRNA-1:cds;Parent=Msa1010000-mRNA-1 |
| chr7_1 | CDS | 12490216 | 12490413 | 12490216 | ID=Msa1010000-mRNA-1:cds;Parent=Msa1010000-mRNA-1 |
| chr7_1 | three_prime_UTR | 12489801 | 12490215 | 12489801 | ID=Msa1010000-mRNA-1:three_prime_utr;Parent=Msa1010000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
