Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023250 | XP_003623208.1 | 94.667 | 225 | 11 | 1 | 1 | 224 | 1 | 225 | 2.85e-151 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023250 | sp|P32110|GSTX6_SOYBN | 77.232 | 224 | 49 | 2 | 2 | 224 | 3 | 225 | 1.08e-123 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023250 | G7L6I2 | 94.667 | 225 | 11 | 1 | 1 | 224 | 1 | 225 | 1.36e-151 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064990 | Msa1023250 | 0.813861 | 2.065422e-51 | -8.615850e-47 |
| Msa0645380 | Msa1023250 | 0.807384 | 5.190631e-50 | -8.615850e-47 |
| Msa0744540 | Msa1023250 | 0.800315 | 1.526537e-48 | -8.615850e-47 |
| Msa0744560 | Msa1023250 | 0.805443 | 1.331705e-49 | -8.615850e-47 |
| Msa0826360 | Msa1023250 | 0.801059 | 1.076512e-48 | -8.615850e-47 |
| Msa0826370 | Msa1023250 | 0.818828 | 1.598905e-52 | -8.615850e-47 |
| Msa0480530 | Msa1023250 | 0.800188 | 1.620321e-48 | -8.615850e-47 |
| Msa0480550 | Msa1023250 | 0.802627 | 5.129613e-49 | -8.615850e-47 |
| Msa1023250 | Msa1061840 | 0.816908 | 4.337726e-52 | -8.615850e-47 |
| Msa1023250 | Msa1150920 | 0.827041 | 1.947170e-54 | -8.615850e-47 |
| Msa0513670 | Msa1023250 | 0.803237 | 3.836877e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023250 | MtrunA17_Chr7g0240681 | 94.667 | 225 | 11 | 1 | 1 | 224 | 1 | 225 | 2.63e-155 | 429 |
| Msa1023250 | MtrunA17_Chr7g0240631 | 78.571 | 224 | 46 | 2 | 1 | 223 | 1 | 223 | 4.18e-128 | 360 |
| Msa1023250 | MtrunA17_Chr7g0240641 | 78.125 | 224 | 47 | 2 | 1 | 223 | 1 | 223 | 3.91e-127 | 358 |
| Msa1023250 | MtrunA17_Chr7g0240691 | 74.886 | 219 | 55 | 0 | 5 | 223 | 36 | 254 | 2.30e-122 | 347 |
| Msa1023250 | MtrunA17_Chr7g0240581 | 68.889 | 225 | 68 | 2 | 1 | 224 | 1 | 224 | 6.44e-112 | 320 |
| Msa1023250 | MtrunA17_Chr7g0240561 | 67.556 | 225 | 71 | 2 | 1 | 224 | 1 | 224 | 1.32e-110 | 316 |
| Msa1023250 | MtrunA17_Chr7g0240551 | 69.333 | 225 | 67 | 2 | 1 | 224 | 1 | 224 | 7.22e-110 | 314 |
| Msa1023250 | MtrunA17_Chr7g0240531 | 66.667 | 225 | 73 | 2 | 1 | 224 | 1 | 224 | 2.92e-104 | 300 |
| Msa1023250 | MtrunA17_Chr7g0240611 | 67.568 | 222 | 67 | 2 | 2 | 223 | 3 | 219 | 7.02e-103 | 296 |
| Msa1023250 | MtrunA17_Chr4g0008791 | 64.286 | 224 | 78 | 2 | 1 | 223 | 1 | 223 | 2.87e-102 | 295 |
| Msa1023250 | MtrunA17_Chr7g0240541 | 65.333 | 225 | 76 | 2 | 1 | 224 | 1 | 224 | 6.36e-102 | 294 |
| Msa1023250 | MtrunA17_Chr7g0240511 | 64.444 | 225 | 73 | 3 | 1 | 224 | 1 | 219 | 4.88e-98 | 284 |
| Msa1023250 | MtrunA17_Chr7g0240671 | 66.827 | 208 | 64 | 2 | 7 | 214 | 5 | 207 | 2.25e-97 | 283 |
| Msa1023250 | MtrunA17_Chr7g0240521 | 62.389 | 226 | 82 | 3 | 1 | 224 | 8 | 232 | 1.26e-95 | 278 |
| Msa1023250 | MtrunA17_Chr4g0008781 | 60.829 | 217 | 82 | 2 | 1 | 216 | 3 | 217 | 1.11e-93 | 273 |
| Msa1023250 | MtrunA17_Chr7g0240651 | 65.611 | 221 | 71 | 2 | 2 | 222 | 3 | 218 | 9.91e-91 | 266 |
| Msa1023250 | MtrunA17_Chr7g0240661 | 66.667 | 213 | 66 | 2 | 2 | 214 | 3 | 210 | 2.86e-88 | 259 |
| Msa1023250 | MtrunA17_Chr8g0379581 | 46.330 | 218 | 114 | 2 | 4 | 220 | 3 | 218 | 1.06e-68 | 210 |
| Msa1023250 | MtrunA17_Chr8g0379561 | 47.418 | 213 | 109 | 2 | 1 | 212 | 1 | 211 | 6.12e-67 | 206 |
| Msa1023250 | MtrunA17_Chr6g0483141 | 47.368 | 209 | 107 | 2 | 6 | 213 | 3 | 209 | 1.21e-65 | 202 |
| Msa1023250 | MtrunA17_Chr3g0132581 | 46.789 | 218 | 113 | 2 | 7 | 223 | 6 | 221 | 1.81e-64 | 199 |
| Msa1023250 | MtrunA17_Chr1g0196771 | 44.344 | 221 | 117 | 4 | 5 | 222 | 2 | 219 | 6.46e-63 | 195 |
| Msa1023250 | MtrunA17_Chr1g0212301 | 45.972 | 211 | 112 | 1 | 6 | 214 | 3 | 213 | 7.16e-61 | 190 |
| Msa1023250 | MtrunA17_Chr1g0196691 | 45.291 | 223 | 114 | 4 | 6 | 223 | 28 | 247 | 1.39e-58 | 185 |
| Msa1023250 | MtrunA17_Chr4g0029341 | 46.009 | 213 | 110 | 2 | 6 | 215 | 4 | 214 | 3.40e-56 | 178 |
| Msa1023250 | MtrunA17_Chr1g0196661 | 44.643 | 224 | 115 | 3 | 6 | 224 | 3 | 222 | 1.33e-55 | 177 |
| Msa1023250 | MtrunA17_Chr1g0196721 | 44.545 | 220 | 117 | 3 | 7 | 223 | 3 | 220 | 2.96e-54 | 173 |
| Msa1023250 | MtrunA17_Chr5g0415411 | 44.545 | 220 | 112 | 4 | 1 | 212 | 1 | 218 | 3.77e-54 | 173 |
| Msa1023250 | MtrunA17_Chr1g0196711 | 45.714 | 210 | 109 | 2 | 6 | 212 | 3 | 210 | 7.62e-54 | 172 |
| Msa1023250 | MtrunA17_Chr5g0417011 | 40.639 | 219 | 121 | 3 | 4 | 215 | 5 | 221 | 4.96e-52 | 167 |
| Msa1023250 | MtrunA17_Chr8g0363751 | 42.986 | 221 | 117 | 4 | 3 | 215 | 2 | 221 | 7.66e-51 | 165 |
| Msa1023250 | MtrunA17_Chr2g0312771 | 42.857 | 210 | 112 | 5 | 6 | 212 | 4 | 208 | 2.65e-49 | 160 |
| Msa1023250 | MtrunA17_Chr2g0312751 | 41.706 | 211 | 115 | 5 | 6 | 213 | 4 | 209 | 1.75e-48 | 158 |
| Msa1023250 | MtrunA17_Chr2g0312791 | 43.137 | 204 | 111 | 4 | 6 | 207 | 4 | 204 | 3.62e-48 | 157 |
| Msa1023250 | MtrunA17_Chr3g0107731 | 41.748 | 206 | 113 | 5 | 15 | 218 | 18 | 218 | 6.17e-47 | 154 |
| Msa1023250 | MtrunA17_Chr2g0312731 | 42.788 | 208 | 105 | 5 | 6 | 207 | 4 | 203 | 1.09e-46 | 154 |
| Msa1023250 | MtrunA17_Chr2g0312721 | 42.718 | 206 | 112 | 5 | 6 | 209 | 4 | 205 | 1.13e-45 | 151 |
| Msa1023250 | MtrunA17_Chr2g0312781 | 41.176 | 204 | 114 | 4 | 6 | 207 | 21 | 220 | 2.99e-45 | 150 |
| Msa1023250 | MtrunA17_Chr3g0107741 | 41.589 | 214 | 118 | 6 | 7 | 218 | 10 | 218 | 1.39e-44 | 148 |
| Msa1023250 | MtrunA17_Chr4g0069471 | 45.989 | 187 | 88 | 6 | 6 | 187 | 25 | 203 | 2.15e-44 | 147 |
| Msa1023250 | MtrunA17_Chr8g0357211 | 40.952 | 210 | 118 | 4 | 5 | 212 | 3 | 208 | 3.58e-44 | 147 |
| Msa1023250 | MtrunA17_Chr8g0357241 | 40.952 | 210 | 118 | 4 | 5 | 212 | 3 | 208 | 5.76e-44 | 147 |
| Msa1023250 | MtrunA17_Chr2g0312811 | 39.810 | 211 | 119 | 5 | 6 | 212 | 4 | 210 | 2.51e-43 | 145 |
| Msa1023250 | MtrunA17_Chr5g0433801 | 37.850 | 214 | 127 | 5 | 1 | 212 | 1 | 210 | 4.10e-42 | 142 |
| Msa1023250 | MtrunA17_Chr2g0312691 | 37.156 | 218 | 131 | 4 | 5 | 220 | 3 | 216 | 1.22e-40 | 138 |
| Msa1023250 | MtrunA17_Chr2g0312681 | 36.190 | 210 | 128 | 5 | 5 | 212 | 3 | 208 | 2.52e-40 | 137 |
| Msa1023250 | MtrunA17_Chr8g0391631 | 47.468 | 158 | 72 | 5 | 5 | 153 | 20 | 175 | 3.24e-39 | 133 |
| Msa1023250 | MtrunA17_Chr2g0312711 | 37.156 | 218 | 130 | 5 | 5 | 220 | 3 | 215 | 5.14e-37 | 129 |
| Msa1023250 | MtrunA17_Chr2g0313561 | 49.153 | 59 | 29 | 1 | 50 | 107 | 2 | 60 | 1.11e-14 | 66.6 |
| Msa1023250 | MtrunA17_Chr5g0415421 | 45.205 | 73 | 37 | 1 | 30 | 99 | 11 | 83 | 4.99e-13 | 63.9 |
| Msa1023250 | MtrunA17_Chr4g0076691 | 27.053 | 207 | 120 | 8 | 20 | 208 | 29 | 222 | 2.95e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023250 | AT3G09270.1 | 49.558 | 226 | 109 | 4 | 1 | 223 | 1 | 224 | 1.01e-75 | 228 |
| Msa1023250 | AT2G29420.1 | 50.000 | 220 | 107 | 2 | 2 | 220 | 5 | 222 | 5.38e-75 | 226 |
| Msa1023250 | AT2G29490.1 | 48.571 | 210 | 103 | 4 | 1 | 207 | 1 | 208 | 1.70e-59 | 187 |
| Msa1023250 | AT2G29450.1 | 45.333 | 225 | 120 | 3 | 1 | 223 | 1 | 224 | 8.69e-58 | 182 |
| Msa1023250 | AT1G27130.1 | 42.667 | 225 | 120 | 4 | 1 | 217 | 1 | 224 | 3.08e-56 | 179 |
| Msa1023250 | AT2G29440.1 | 43.111 | 225 | 124 | 3 | 1 | 223 | 1 | 223 | 1.45e-55 | 177 |
| Msa1023250 | AT1G10370.1 | 45.455 | 209 | 106 | 3 | 3 | 204 | 2 | 209 | 1.79e-55 | 177 |
| Msa1023250 | AT2G29480.1 | 45.714 | 210 | 109 | 4 | 1 | 207 | 1 | 208 | 2.74e-54 | 174 |
| Msa1023250 | AT2G29460.1 | 43.498 | 223 | 121 | 4 | 1 | 220 | 1 | 221 | 5.62e-54 | 173 |
| Msa1023250 | AT1G59700.1 | 45.755 | 212 | 106 | 5 | 1 | 204 | 1 | 211 | 2.95e-52 | 169 |
| Msa1023250 | AT2G29470.1 | 43.128 | 211 | 114 | 5 | 1 | 207 | 1 | 209 | 6.85e-52 | 167 |
| Msa1023250 | AT1G59670.1 | 41.026 | 234 | 124 | 5 | 1 | 221 | 1 | 233 | 1.37e-51 | 167 |
| Msa1023250 | AT1G10360.1 | 42.180 | 211 | 113 | 4 | 1 | 204 | 1 | 209 | 3.10e-51 | 166 |
| Msa1023250 | AT1G69930.1 | 39.910 | 223 | 127 | 3 | 3 | 219 | 9 | 230 | 1.40e-50 | 164 |
| Msa1023250 | AT1G78340.1 | 43.541 | 209 | 112 | 4 | 6 | 212 | 4 | 208 | 1.23e-49 | 161 |
| Msa1023250 | AT1G78370.1 | 41.748 | 206 | 114 | 4 | 9 | 212 | 7 | 208 | 2.26e-49 | 160 |
| Msa1023250 | AT1G69920.1 | 38.222 | 225 | 130 | 4 | 2 | 218 | 30 | 253 | 9.55e-49 | 160 |
| Msa1023250 | AT1G78380.1 | 44.279 | 201 | 106 | 4 | 6 | 204 | 4 | 200 | 2.44e-48 | 158 |
| Msa1023250 | AT1G17170.1 | 41.284 | 218 | 121 | 4 | 5 | 220 | 3 | 215 | 3.61e-48 | 158 |
| Msa1023250 | AT1G27140.1 | 40.000 | 230 | 128 | 4 | 1 | 221 | 1 | 229 | 4.35e-48 | 158 |
| Msa1023250 | AT1G53680.1 | 40.191 | 209 | 121 | 3 | 4 | 210 | 5 | 211 | 2.04e-47 | 156 |
| Msa1023250 | AT1G78320.1 | 44.059 | 202 | 107 | 5 | 5 | 204 | 3 | 200 | 2.60e-47 | 155 |
| Msa1023250 | AT5G62480.1 | 40.000 | 220 | 120 | 4 | 6 | 215 | 8 | 225 | 5.80e-45 | 150 |
| Msa1023250 | AT1G17180.1 | 41.627 | 209 | 116 | 5 | 6 | 212 | 4 | 208 | 9.50e-45 | 149 |
| Msa1023250 | AT1G78360.1 | 41.429 | 210 | 116 | 5 | 6 | 212 | 4 | 209 | 3.87e-43 | 145 |
| Msa1023250 | AT3G43800.1 | 38.942 | 208 | 117 | 6 | 3 | 204 | 2 | 205 | 3.06e-40 | 137 |
| Msa1023250 | AT1G74590.1 | 35.648 | 216 | 129 | 4 | 6 | 214 | 7 | 219 | 7.34e-39 | 134 |
| Msa1023250 | AT1G17190.1 | 37.736 | 212 | 126 | 4 | 3 | 212 | 2 | 209 | 3.18e-38 | 132 |
| Msa1023250 | AT1G78320.2 | 36.318 | 201 | 97 | 5 | 5 | 204 | 3 | 173 | 1.02e-30 | 112 |
| Msa1023250 | AT5G62480.2 | 31.507 | 219 | 114 | 4 | 6 | 215 | 8 | 199 | 1.47e-27 | 104 |
| Msa1023250 | AT5G62480.3 | 31.050 | 219 | 114 | 4 | 6 | 215 | 8 | 198 | 8.39e-27 | 102 |
| Msa1023250 | AT2G02380.1 | 25.571 | 219 | 135 | 7 | 6 | 208 | 11 | 217 | 8.69e-12 | 62.8 |
Find 56 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTCCACTTGGAAAGTT+TGG | 0.246363 | 7_1:-50634507 | None:intergenic |
| AAAGAGCCTTGGCTCGATTT+TGG | 0.290434 | 7_1:+50634038 | Msa1023250:CDS |
| GAGCTGAAGGACAAGTTCTT+TGG | 0.294063 | 7_1:+50634377 | Msa1023250:CDS |
| GTCATCGGATCTTTGCTGTT+AGG | 0.317849 | 7_1:+50634672 | Msa1023250:three_prime_UTR |
| CTGGATGGTTGAGAAATTCT+TGG | 0.336617 | 7_1:-50634526 | None:intergenic |
| ATTTCTCCGTGTGACATCTA+AGG | 0.337891 | 7_1:+50634728 | Msa1023250:three_prime_UTR |
| TGGCTCCACTTGGAAAGTTT+GGG | 0.342035 | 7_1:-50634506 | None:intergenic |
| AAAATCGAGCCAAGGCTCTT+TGG | 0.365206 | 7_1:-50634036 | None:intergenic |
| ATCTGTACCCTGCACACAAA+TGG | 0.372564 | 7_1:-50633809 | None:intergenic |
| TCTCAACCATCCAGTTGTTA+AGG | 0.373954 | 7_1:+50634535 | Msa1023250:CDS |
| CCTTTGATTCAAGACATAAC+AGG | 0.388085 | 7_1:+50634455 | Msa1023250:CDS |
| TTCTTTGGAGGAGAGGAGAT+TGG | 0.390435 | 7_1:+50634392 | Msa1023250:CDS |
| TCATCGGATCTTTGCTGTTA+GGG | 0.392430 | 7_1:+50634673 | Msa1023250:three_prime_UTR |
| GTGAAGCTATTGGGAGCTAT+AGG | 0.394371 | 7_1:+50633782 | Msa1023250:CDS |
| AAATCAAGAAGTGAAGCTAT+TGG | 0.399909 | 7_1:+50633772 | Msa1023250:CDS |
| GGCATATTCTCCTTAACAAC+TGG | 0.406984 | 7_1:-50634545 | None:intergenic |
| AATCAAGAAGTGAAGCTATT+GGG | 0.422073 | 7_1:+50633773 | Msa1023250:CDS |
| AGGAGAGGAGATTGGAATTG+TGG | 0.454908 | 7_1:+50634400 | Msa1023250:CDS |
| ACAGATTGCTCTCAAGTTGA+AGG | 0.459689 | 7_1:+50633826 | Msa1023250:CDS |
| GAGAAATTCTTGGCTCCACT+TGG | 0.459712 | 7_1:-50634516 | None:intergenic |
| AAGGCAACTACTTGCACATC+TGG | 0.460476 | 7_1:+50633624 | None:intergenic |
| TCTGTACCCTGCACACAAAT+GGG | 0.464539 | 7_1:-50633808 | None:intergenic |
| ATCACAAGGGACTCTGATAT+AGG | 0.465216 | 7_1:-50633956 | None:intergenic |
| TTTGTTTATGAGTGAGGCAC+TGG | 0.469553 | 7_1:-50633697 | None:intergenic |
| AGAAAATTTGTTTATGAGTG+AGG | 0.478436 | 7_1:-50633703 | None:intergenic |
| TAGGAAGCCCATTTGTGTGC+AGG | 0.488142 | 7_1:+50633801 | Msa1023250:CDS |
| CTGAAGGACAAGTTCTTTGG+AGG | 0.491967 | 7_1:+50634380 | Msa1023250:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.497242 | 7_1:+50633981 | Msa1023250:CDS |
| CCTGTTATGTCTTGAATCAA+AGG | 0.497589 | 7_1:-50634455 | None:intergenic |
| GAGCGCGAGAAGAATATTGA+AGG | 0.504203 | 7_1:+50634323 | Msa1023250:CDS |
| CGAGCCAAGGCTCTTTGGTA+AGG | 0.514881 | 7_1:-50634031 | None:intergenic |
| AGAAAATTGAAGTGCTGCAA+TGG | 0.514958 | 7_1:+50633745 | Msa1023250:exon |
| TATAAACTGGGTTATACTTG+AGG | 0.528468 | 7_1:-50633901 | None:intergenic |
| TTATTAATATTATCTGTCAT+CGG | 0.528541 | 7_1:+50634657 | Msa1023250:three_prime_UTR |
| GGACAAGTTCTTTGGAGGAG+AGG | 0.532885 | 7_1:+50634385 | Msa1023250:CDS |
| TCTAAGGTTATAGTTATCAA+AGG | 0.540589 | 7_1:+50634744 | Msa1023250:three_prime_UTR |
| CTTTGATTCAAGACATAACA+GGG | 0.541148 | 7_1:+50634456 | Msa1023250:CDS |
| CACATCTGGTCAACAACATG+TGG | 0.544136 | 7_1:+50633638 | Msa1023250:five_prime_UTR |
| CTGTTATGTCTTGAATCAAA+GGG | 0.548966 | 7_1:-50634454 | None:intergenic |
| TGATCCTTACCAAAGAGCCT+TGG | 0.553180 | 7_1:+50634027 | Msa1023250:CDS |
| TAAGGATCAGAAGGCAAGAT+GGG | 0.560542 | 7_1:-50634013 | None:intergenic |
| CAATATACTCAATAATCACA+AGG | 0.568482 | 7_1:-50633970 | None:intergenic |
| GAATATTGAAGGAACAATTG+AGG | 0.577684 | 7_1:+50634334 | Msa1023250:CDS |
| AGGAAGCCCATTTGTGTGCA+GGG | 0.580217 | 7_1:+50633802 | Msa1023250:CDS |
| GTAAGGATCAGAAGGCAAGA+TGG | 0.581892 | 7_1:-50634014 | None:intergenic |
| TATTCTCCTTAACAACTGGA+TGG | 0.588298 | 7_1:-50634541 | None:intergenic |
| GATTCTTGAGAATGAGCTGA+AGG | 0.588727 | 7_1:+50634364 | Msa1023250:CDS |
| GCTCTTTGGTAAGGATCAGA+AGG | 0.590016 | 7_1:-50634022 | None:intergenic |
| GTCTAACTTCATCGACGACA+AGG | 0.594451 | 7_1:+50634060 | Msa1023250:CDS |
| CAGATTGCTCTCAAGTTGAA+GGG | 0.608754 | 7_1:+50633827 | Msa1023250:CDS |
| CTATAACCTTAGATGTCACA+CGG | 0.626537 | 7_1:-50634734 | None:intergenic |
| TCTTTGCTTCAAAATAGACT+CGG | 0.635233 | 7_1:+50634615 | Msa1023250:exon |
| GTTAGACCAAAATCGAGCCA+AGG | 0.638172 | 7_1:-50634044 | None:intergenic |
| AGTGTCCCAAACTTTCCAAG+TGG | 0.647650 | 7_1:+50634501 | Msa1023250:CDS |
| AATATACTCAATAATCACAA+GGG | 0.685010 | 7_1:-50633969 | None:intergenic |
| ACATCTGGTCAACAACATGT+GGG | 0.746735 | 7_1:+50633639 | Msa1023250:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATATTATCTGTCAT+CGG | + | chr7_1:50634657-50634676 | Msa1023250:three_prime_UTR | 15.0% |
| !! | TTATTAATATTATCTGTCAT+CGG | + | chr7_1:50634657-50634676 | Msa1023250:three_prime_UTR | 15.0% |
| !! | AATATACTCAATAATCACAA+GGG | - | chr7_1:50633972-50633991 | None:intergenic | 20.0% |
| !! | ACAAACATAAAAAAAGTAAG+TGG | + | chr7_1:50634197-50634216 | Msa1023250:intron | 20.0% |
| !! | AATATACTCAATAATCACAA+GGG | - | chr7_1:50633972-50633991 | None:intergenic | 20.0% |
| !! | ACAAACATAAAAAAAGTAAG+TGG | + | chr7_1:50634197-50634216 | Msa1023250:intron | 20.0% |
| !! | AGAAAATTTGTTTATGAGTG+AGG | - | chr7_1:50633706-50633725 | None:intergenic | 25.0% |
| !! | CTGGAATCTTTTTATAAACT+GGG | - | chr7_1:50633916-50633935 | None:intergenic | 25.0% |
| !! | ACTGGAATCTTTTTATAAAC+TGG | - | chr7_1:50633917-50633936 | None:intergenic | 25.0% |
| !! | TTTTCATTGTGAACAAAAAC+TGG | - | chr7_1:50633935-50633954 | None:intergenic | 25.0% |
| ! | CAATATACTCAATAATCACA+AGG | - | chr7_1:50633973-50633992 | None:intergenic | 25.0% |
| ! | ATTACATCATATGTGATTGA+AGG | + | chr7_1:50634140-50634159 | Msa1023250:intron | 25.0% |
| !! | TCTAAGGTTATAGTTATCAA+AGG | + | chr7_1:50634744-50634763 | Msa1023250:three_prime_UTR | 25.0% |
| !! | AGAAAATTTGTTTATGAGTG+AGG | - | chr7_1:50633706-50633725 | None:intergenic | 25.0% |
| !! | CTGGAATCTTTTTATAAACT+GGG | - | chr7_1:50633916-50633935 | None:intergenic | 25.0% |
| !! | ACTGGAATCTTTTTATAAAC+TGG | - | chr7_1:50633917-50633936 | None:intergenic | 25.0% |
| !! | TTTTCATTGTGAACAAAAAC+TGG | - | chr7_1:50633935-50633954 | None:intergenic | 25.0% |
| ! | CAATATACTCAATAATCACA+AGG | - | chr7_1:50633973-50633992 | None:intergenic | 25.0% |
| ! | ATTACATCATATGTGATTGA+AGG | + | chr7_1:50634140-50634159 | Msa1023250:intron | 25.0% |
| !! | TCTAAGGTTATAGTTATCAA+AGG | + | chr7_1:50634744-50634763 | Msa1023250:three_prime_UTR | 25.0% |
| AAATCAAGAAGTGAAGCTAT+TGG | + | chr7_1:50633772-50633791 | Msa1023250:CDS | 30.0% | |
| AATCAAGAAGTGAAGCTATT+GGG | + | chr7_1:50633773-50633792 | Msa1023250:CDS | 30.0% | |
| TATAAACTGGGTTATACTTG+AGG | - | chr7_1:50633904-50633923 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7_1:50633981-50634000 | Msa1023250:CDS | 30.0% | |
| ! | ATTTACGTTAGAAAAGTACG+TGG | - | chr7_1:50634229-50634248 | None:intergenic | 30.0% |
| GAATATTGAAGGAACAATTG+AGG | + | chr7_1:50634334-50634353 | Msa1023250:CDS | 30.0% | |
| CTGTTATGTCTTGAATCAAA+GGG | - | chr7_1:50634457-50634476 | None:intergenic | 30.0% | |
| CTTTGATTCAAGACATAACA+GGG | + | chr7_1:50634456-50634475 | Msa1023250:CDS | 30.0% | |
| !! | GCTTTGAAATAAGCAAAAAG+AGG | - | chr7_1:50634581-50634600 | None:intergenic | 30.0% |
| TCTTTGCTTCAAAATAGACT+CGG | + | chr7_1:50634615-50634634 | Msa1023250:exon | 30.0% | |
| AAATCAAGAAGTGAAGCTAT+TGG | + | chr7_1:50633772-50633791 | Msa1023250:CDS | 30.0% | |
| AATCAAGAAGTGAAGCTATT+GGG | + | chr7_1:50633773-50633792 | Msa1023250:CDS | 30.0% | |
| TATAAACTGGGTTATACTTG+AGG | - | chr7_1:50633904-50633923 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7_1:50633981-50634000 | Msa1023250:CDS | 30.0% | |
| ! | ATTTACGTTAGAAAAGTACG+TGG | - | chr7_1:50634229-50634248 | None:intergenic | 30.0% |
| GAATATTGAAGGAACAATTG+AGG | + | chr7_1:50634334-50634353 | Msa1023250:CDS | 30.0% | |
| CTGTTATGTCTTGAATCAAA+GGG | - | chr7_1:50634457-50634476 | None:intergenic | 30.0% | |
| CTTTGATTCAAGACATAACA+GGG | + | chr7_1:50634456-50634475 | Msa1023250:CDS | 30.0% | |
| !! | GCTTTGAAATAAGCAAAAAG+AGG | - | chr7_1:50634581-50634600 | None:intergenic | 30.0% |
| TCTTTGCTTCAAAATAGACT+CGG | + | chr7_1:50634615-50634634 | Msa1023250:exon | 30.0% | |
| !!! | CACTGGCTTTTTATAGAGTT+TGG | - | chr7_1:50633683-50633702 | None:intergenic | 35.0% |
| !! | AGAAAATTGAAGTGCTGCAA+TGG | + | chr7_1:50633745-50633764 | Msa1023250:exon | 35.0% |
| CCTGTTATGTCTTGAATCAA+AGG | - | chr7_1:50634458-50634477 | None:intergenic | 35.0% | |
| CCTTTGATTCAAGACATAAC+AGG | + | chr7_1:50634455-50634474 | Msa1023250:CDS | 35.0% | |
| TATTCTCCTTAACAACTGGA+TGG | - | chr7_1:50634544-50634563 | None:intergenic | 35.0% | |
| TAAGCAAAAAGAGGTTCTCT+AGG | - | chr7_1:50634572-50634591 | None:intergenic | 35.0% | |
| !!! | GAGTCTATTTTGAAGCAAAG+AGG | - | chr7_1:50634616-50634635 | None:intergenic | 35.0% |
| CTATAACCTTAGATGTCACA+CGG | - | chr7_1:50634737-50634756 | None:intergenic | 35.0% | |
| !!! | CACTGGCTTTTTATAGAGTT+TGG | - | chr7_1:50633683-50633702 | None:intergenic | 35.0% |
| !! | AGAAAATTGAAGTGCTGCAA+TGG | + | chr7_1:50633745-50633764 | Msa1023250:exon | 35.0% |
| CCTGTTATGTCTTGAATCAA+AGG | - | chr7_1:50634458-50634477 | None:intergenic | 35.0% | |
| CCTTTGATTCAAGACATAAC+AGG | + | chr7_1:50634455-50634474 | Msa1023250:CDS | 35.0% | |
| TATTCTCCTTAACAACTGGA+TGG | - | chr7_1:50634544-50634563 | None:intergenic | 35.0% | |
| TAAGCAAAAAGAGGTTCTCT+AGG | - | chr7_1:50634572-50634591 | None:intergenic | 35.0% | |
| !!! | GAGTCTATTTTGAAGCAAAG+AGG | - | chr7_1:50634616-50634635 | None:intergenic | 35.0% |
| CTATAACCTTAGATGTCACA+CGG | - | chr7_1:50634737-50634756 | None:intergenic | 35.0% | |
| ACATCTGGTCAACAACATGT+GGG | + | chr7_1:50633639-50633658 | Msa1023250:five_prime_UTR | 40.0% | |
| TTTGTTTATGAGTGAGGCAC+TGG | - | chr7_1:50633700-50633719 | None:intergenic | 40.0% | |
| !! | ACAGATTGCTCTCAAGTTGA+AGG | + | chr7_1:50633826-50633845 | Msa1023250:CDS | 40.0% |
| !! | CAGATTGCTCTCAAGTTGAA+GGG | + | chr7_1:50633827-50633846 | Msa1023250:CDS | 40.0% |
| !! | GAGGAGAAGTTCACTTTTGT+TGG | - | chr7_1:50633885-50633904 | None:intergenic | 40.0% |
| ATCACAAGGGACTCTGATAT+AGG | - | chr7_1:50633959-50633978 | None:intergenic | 40.0% | |
| TAAGGATCAGAAGGCAAGAT+GGG | - | chr7_1:50634016-50634035 | None:intergenic | 40.0% | |
| TGTGCAGTGTAATTGTAACG+CGG | - | chr7_1:50634180-50634199 | None:intergenic | 40.0% | |
| GATTCTTGAGAATGAGCTGA+AGG | + | chr7_1:50634364-50634383 | Msa1023250:CDS | 40.0% | |
| ! | CAGCTGTGTACATAGCTTTT+TGG | + | chr7_1:50634429-50634448 | Msa1023250:CDS | 40.0% |
| CTGGATGGTTGAGAAATTCT+TGG | - | chr7_1:50634529-50634548 | None:intergenic | 40.0% | |
| TCTCAACCATCCAGTTGTTA+AGG | + | chr7_1:50634535-50634554 | Msa1023250:CDS | 40.0% | |
| GGCATATTCTCCTTAACAAC+TGG | - | chr7_1:50634548-50634567 | None:intergenic | 40.0% | |
| !! | TCATCGGATCTTTGCTGTTA+GGG | + | chr7_1:50634673-50634692 | Msa1023250:three_prime_UTR | 40.0% |
| ATTTCTCCGTGTGACATCTA+AGG | + | chr7_1:50634728-50634747 | Msa1023250:three_prime_UTR | 40.0% | |
| ACATCTGGTCAACAACATGT+GGG | + | chr7_1:50633639-50633658 | Msa1023250:five_prime_UTR | 40.0% | |
| TTTGTTTATGAGTGAGGCAC+TGG | - | chr7_1:50633700-50633719 | None:intergenic | 40.0% | |
| !! | ACAGATTGCTCTCAAGTTGA+AGG | + | chr7_1:50633826-50633845 | Msa1023250:CDS | 40.0% |
| !! | CAGATTGCTCTCAAGTTGAA+GGG | + | chr7_1:50633827-50633846 | Msa1023250:CDS | 40.0% |
| !! | GAGGAGAAGTTCACTTTTGT+TGG | - | chr7_1:50633885-50633904 | None:intergenic | 40.0% |
| ATCACAAGGGACTCTGATAT+AGG | - | chr7_1:50633959-50633978 | None:intergenic | 40.0% | |
| TAAGGATCAGAAGGCAAGAT+GGG | - | chr7_1:50634016-50634035 | None:intergenic | 40.0% | |
| TGTGCAGTGTAATTGTAACG+CGG | - | chr7_1:50634180-50634199 | None:intergenic | 40.0% | |
| GATTCTTGAGAATGAGCTGA+AGG | + | chr7_1:50634364-50634383 | Msa1023250:CDS | 40.0% | |
| ! | CAGCTGTGTACATAGCTTTT+TGG | + | chr7_1:50634429-50634448 | Msa1023250:CDS | 40.0% |
| CTGGATGGTTGAGAAATTCT+TGG | - | chr7_1:50634529-50634548 | None:intergenic | 40.0% | |
| TCTCAACCATCCAGTTGTTA+AGG | + | chr7_1:50634535-50634554 | Msa1023250:CDS | 40.0% | |
| GGCATATTCTCCTTAACAAC+TGG | - | chr7_1:50634548-50634567 | None:intergenic | 40.0% | |
| !! | TCATCGGATCTTTGCTGTTA+GGG | + | chr7_1:50634673-50634692 | Msa1023250:three_prime_UTR | 40.0% |
| ATTTCTCCGTGTGACATCTA+AGG | + | chr7_1:50634728-50634747 | Msa1023250:three_prime_UTR | 40.0% | |
| CACATCTGGTCAACAACATG+TGG | + | chr7_1:50633638-50633657 | Msa1023250:five_prime_UTR | 45.0% | |
| GTGAAGCTATTGGGAGCTAT+AGG | + | chr7_1:50633782-50633801 | Msa1023250:CDS | 45.0% | |
| TCTGTACCCTGCACACAAAT+GGG | - | chr7_1:50633811-50633830 | None:intergenic | 45.0% | |
| ATCTGTACCCTGCACACAAA+TGG | - | chr7_1:50633812-50633831 | None:intergenic | 45.0% | |
| GTAAGGATCAGAAGGCAAGA+TGG | - | chr7_1:50634017-50634036 | None:intergenic | 45.0% | |
| GCTCTTTGGTAAGGATCAGA+AGG | - | chr7_1:50634025-50634044 | None:intergenic | 45.0% | |
| TGATCCTTACCAAAGAGCCT+TGG | + | chr7_1:50634027-50634046 | Msa1023250:CDS | 45.0% | |
| AAAATCGAGCCAAGGCTCTT+TGG | - | chr7_1:50634039-50634058 | None:intergenic | 45.0% | |
| !! | AAAGAGCCTTGGCTCGATTT+TGG | + | chr7_1:50634038-50634057 | Msa1023250:CDS | 45.0% |
| GTTAGACCAAAATCGAGCCA+AGG | - | chr7_1:50634047-50634066 | None:intergenic | 45.0% | |
| GTCTAACTTCATCGACGACA+AGG | + | chr7_1:50634060-50634079 | Msa1023250:CDS | 45.0% | |
| ! | GTTAGAAAAGTACGTGGCTG+CGG | - | chr7_1:50634223-50634242 | None:intergenic | 45.0% |
| GAGCGCGAGAAGAATATTGA+AGG | + | chr7_1:50634323-50634342 | Msa1023250:CDS | 45.0% | |
| GAGCTGAAGGACAAGTTCTT+TGG | + | chr7_1:50634377-50634396 | Msa1023250:CDS | 45.0% | |
| CTGAAGGACAAGTTCTTTGG+AGG | + | chr7_1:50634380-50634399 | Msa1023250:CDS | 45.0% | |
| ! | TTCTTTGGAGGAGAGGAGAT+TGG | + | chr7_1:50634392-50634411 | Msa1023250:CDS | 45.0% |
| AGGAGAGGAGATTGGAATTG+TGG | + | chr7_1:50634400-50634419 | Msa1023250:CDS | 45.0% | |
| AGTGTCCCAAACTTTCCAAG+TGG | + | chr7_1:50634501-50634520 | Msa1023250:CDS | 45.0% | |
| TGGCTCCACTTGGAAAGTTT+GGG | - | chr7_1:50634509-50634528 | None:intergenic | 45.0% | |
| TTGGCTCCACTTGGAAAGTT+TGG | - | chr7_1:50634510-50634529 | None:intergenic | 45.0% | |
| GAGAAATTCTTGGCTCCACT+TGG | - | chr7_1:50634519-50634538 | None:intergenic | 45.0% | |
| GCAAAAAGAGGTTCTCTAGG+TGG | - | chr7_1:50634569-50634588 | None:intergenic | 45.0% | |
| !! | GTCATCGGATCTTTGCTGTT+AGG | + | chr7_1:50634672-50634691 | Msa1023250:three_prime_UTR | 45.0% |
| TGTTGACCAGATGTGCAAGT+AGG | - | chr7_1:50633633-50633652 | None:intergenic | 45.0% | |
| CACATCTGGTCAACAACATG+TGG | + | chr7_1:50633638-50633657 | Msa1023250:five_prime_UTR | 45.0% | |
| GTGAAGCTATTGGGAGCTAT+AGG | + | chr7_1:50633782-50633801 | Msa1023250:CDS | 45.0% | |
| TCTGTACCCTGCACACAAAT+GGG | - | chr7_1:50633811-50633830 | None:intergenic | 45.0% | |
| ATCTGTACCCTGCACACAAA+TGG | - | chr7_1:50633812-50633831 | None:intergenic | 45.0% | |
| GTAAGGATCAGAAGGCAAGA+TGG | - | chr7_1:50634017-50634036 | None:intergenic | 45.0% | |
| GCTCTTTGGTAAGGATCAGA+AGG | - | chr7_1:50634025-50634044 | None:intergenic | 45.0% | |
| TGATCCTTACCAAAGAGCCT+TGG | + | chr7_1:50634027-50634046 | Msa1023250:CDS | 45.0% | |
| AAAATCGAGCCAAGGCTCTT+TGG | - | chr7_1:50634039-50634058 | None:intergenic | 45.0% | |
| !! | AAAGAGCCTTGGCTCGATTT+TGG | + | chr7_1:50634038-50634057 | Msa1023250:CDS | 45.0% |
| GTTAGACCAAAATCGAGCCA+AGG | - | chr7_1:50634047-50634066 | None:intergenic | 45.0% | |
| GTCTAACTTCATCGACGACA+AGG | + | chr7_1:50634060-50634079 | Msa1023250:CDS | 45.0% | |
| ! | GTTAGAAAAGTACGTGGCTG+CGG | - | chr7_1:50634223-50634242 | None:intergenic | 45.0% |
| GAGCGCGAGAAGAATATTGA+AGG | + | chr7_1:50634323-50634342 | Msa1023250:CDS | 45.0% | |
| GAGCTGAAGGACAAGTTCTT+TGG | + | chr7_1:50634377-50634396 | Msa1023250:CDS | 45.0% | |
| CTGAAGGACAAGTTCTTTGG+AGG | + | chr7_1:50634380-50634399 | Msa1023250:CDS | 45.0% | |
| ! | TTCTTTGGAGGAGAGGAGAT+TGG | + | chr7_1:50634392-50634411 | Msa1023250:CDS | 45.0% |
| AGGAGAGGAGATTGGAATTG+TGG | + | chr7_1:50634400-50634419 | Msa1023250:CDS | 45.0% | |
| AGTGTCCCAAACTTTCCAAG+TGG | + | chr7_1:50634501-50634520 | Msa1023250:CDS | 45.0% | |
| TGGCTCCACTTGGAAAGTTT+GGG | - | chr7_1:50634509-50634528 | None:intergenic | 45.0% | |
| TTGGCTCCACTTGGAAAGTT+TGG | - | chr7_1:50634510-50634529 | None:intergenic | 45.0% | |
| GAGAAATTCTTGGCTCCACT+TGG | - | chr7_1:50634519-50634538 | None:intergenic | 45.0% | |
| GCAAAAAGAGGTTCTCTAGG+TGG | - | chr7_1:50634569-50634588 | None:intergenic | 45.0% | |
| !! | GTCATCGGATCTTTGCTGTT+AGG | + | chr7_1:50634672-50634691 | Msa1023250:three_prime_UTR | 45.0% |
| TAGGAAGCCCATTTGTGTGC+AGG | + | chr7_1:50633801-50633820 | Msa1023250:CDS | 50.0% | |
| AGGAAGCCCATTTGTGTGCA+GGG | + | chr7_1:50633802-50633821 | Msa1023250:CDS | 50.0% | |
| ! | GGACAAGTTCTTTGGAGGAG+AGG | + | chr7_1:50634385-50634404 | Msa1023250:CDS | 50.0% |
| TAGGAAGCCCATTTGTGTGC+AGG | + | chr7_1:50633801-50633820 | Msa1023250:CDS | 50.0% | |
| AGGAAGCCCATTTGTGTGCA+GGG | + | chr7_1:50633802-50633821 | Msa1023250:CDS | 50.0% | |
| ! | GGACAAGTTCTTTGGAGGAG+AGG | + | chr7_1:50634385-50634404 | Msa1023250:CDS | 50.0% |
| CGAGCCAAGGCTCTTTGGTA+AGG | - | chr7_1:50634034-50634053 | None:intergenic | 55.0% | |
| CGAGCCAAGGCTCTTTGGTA+AGG | - | chr7_1:50634034-50634053 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 50633631 | 50634779 | 50633631 | ID=Msa1023250;Name=Msa1023250 |
| chr7_1 | mRNA | 50633631 | 50634779 | 50633631 | ID=Msa1023250-mRNA-1;Parent=Msa1023250;Name=Msa1023250-mRNA-1;_AED=0.40;_eAED=0.40;_QI=133|1|1|1|1|1|2|148|224 |
| chr7_1 | exon | 50633631 | 50634081 | 50633631 | ID=Msa1023250-mRNA-1:exon:9944;Parent=Msa1023250-mRNA-1 |
| chr7_1 | exon | 50634275 | 50634779 | 50634275 | ID=Msa1023250-mRNA-1:exon:9945;Parent=Msa1023250-mRNA-1 |
| chr7_1 | five_prime_UTR | 50633631 | 50633763 | 50633631 | ID=Msa1023250-mRNA-1:five_prime_utr;Parent=Msa1023250-mRNA-1 |
| chr7_1 | CDS | 50633764 | 50634081 | 50633764 | ID=Msa1023250-mRNA-1:cds;Parent=Msa1023250-mRNA-1 |
| chr7_1 | CDS | 50634275 | 50634631 | 50634275 | ID=Msa1023250-mRNA-1:cds;Parent=Msa1023250-mRNA-1 |
| chr7_1 | three_prime_UTR | 50634632 | 50634779 | 50634632 | ID=Msa1023250-mRNA-1:three_prime_utr;Parent=Msa1023250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
