AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744540 MtrunA17_Chr5g0447941 98.397 312 5 0 1 312 1 312 0.0 637
Msa0744540 MtrunA17_Chr5g0447951 98.077 312 6 0 1 312 1 312 0.0 636
Msa0744540 MtrunA17_Chr5g0447961 98.077 312 6 0 1 312 1 312 0.0 636
Msa0744540 MtrunA17_Chr3g0121001 68.182 308 97 1 6 312 7 314 5.74e-162 453
Msa0744540 MtrunA17_Chr1g0173621 62.951 305 110 3 1 302 1 305 1.22e-137 392
Msa0744540 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 3.91e-96 286
Msa0744540 MtrunA17_Chr6g0480011 49.186 307 143 8 1 300 1 301 2.46e-94 282
Msa0744540 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 2.79e-92 276
Msa0744540 MtrunA17_Chr8g0368921 42.958 284 159 2 19 300 15 297 2.41e-75 233
Msa0744540 MtrunA17_Chr4g0018921 41.754 285 161 4 18 300 12 293 1.38e-73 229
Msa0744540 MtrunA17_Chr8g0368931 43.403 288 152 4 19 302 15 295 1.08e-70 221
Msa0744540 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 1.15e-70 221
Msa0744540 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 3.10e-66 210
Msa0744540 MtrunA17_Chr4g0009581 41.639 305 150 6 19 312 16 303 1.02e-63 203
Msa0744540 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 1.18e-59 189
Msa0744540 MtrunA17_Chr4g0036051 39.414 307 171 6 15 310 6 308 3.90e-59 192
Msa0744540 MtrunA17_Chr7g0243551 38.686 274 160 5 20 292 23 289 1.16e-58 190
Msa0744540 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 5.33e-51 166
Msa0744540 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 1.05e-49 163
Msa0744540 MtrunA17_Chr4g0009621 42.466 219 114 2 82 300 1 207 8.19e-44 149
Msa0744540 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 1.09e-25 99.0
Msa0744540 MtrunA17_Chr4g0036291 50.000 90 43 2 20 107 17 106 2.17e-23 92.4
Msa0744540 MtrunA17_Chr4g0036311 43.119 109 57 3 1 107 1 106 1.06e-22 90.9
Msa0744540 MtrunA17_Chr4g0036251 46.296 108 49 3 1 107 1 100 1.34e-22 90.1
Msa0744540 MtrunA17_Chr3g0095421 26.140 329 159 13 15 285 42 344 4.09e-17 80.9
Msa0744540 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 2.20e-16 73.6
Msa0744540 MtrunA17_Chr3g0127491 22.867 293 179 8 36 294 71 350 5.73e-14 71.6
Msa0744540 MtrunA17_Chr7g0274071 25.347 288 151 11 41 289 52 314 4.78e-13 68.9
Msa0744540 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 3.30e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744540 AT1G59960.1 53.571 308 132 6 1 300 1 305 7.12e-112 327
Msa0744540 AT1G59950.1 55.903 288 117 5 20 300 15 299 1.25e-104 308
Msa0744540 AT2G37770.2 44.755 286 147 4 19 300 15 293 1.18e-77 239
Msa0744540 AT2G37790.1 43.357 286 151 4 19 300 15 293 2.17e-76 236
Msa0744540 AT5G62420.1 43.662 284 154 4 20 300 14 294 1.13e-73 229
Msa0744540 AT5G01670.1 42.254 284 155 6 19 300 23 299 1.14e-72 227
Msa0744540 AT2G37760.4 43.662 284 147 4 19 299 15 288 4.25e-72 224
Msa0744540 AT2G37760.3 43.662 284 147 4 19 299 15 288 4.25e-72 224
Msa0744540 AT2G37760.5 44.128 281 144 4 19 296 15 285 3.04e-71 223
Msa0744540 AT2G37760.2 43.617 282 146 4 19 297 15 286 2.42e-70 221
Msa0744540 AT2G37760.1 43.617 282 146 4 19 297 15 286 2.42e-70 221
Msa0744540 AT3G53880.1 42.049 283 159 3 19 300 15 293 9.88e-70 219
Msa0744540 AT3G53880.2 42.143 280 151 4 19 294 15 287 2.47e-67 213
Msa0744540 AT2G21260.1 39.384 292 162 6 15 295 6 293 4.64e-67 212
Msa0744540 AT5G01670.2 38.585 311 155 7 19 300 23 326 1.21e-66 213
Msa0744540 AT2G21250.1 38.111 307 175 6 15 310 6 308 8.47e-66 209
Msa0744540 AT2G37760.6 43.515 239 128 3 62 297 6 240 8.08e-58 187
Msa0744540 AT2G37760.7 43.515 239 128 3 62 297 6 240 8.08e-58 187
Msa0744540 AT2G37770.1 48.223 197 92 3 19 212 15 204 6.54e-55 180
Msa0744540 AT2G21250.2 42.381 210 110 5 15 217 6 211 9.95e-49 163
Msa0744540 AT2G21260.2 35.000 220 130 5 87 295 8 225 1.66e-40 142
Msa0744540 AT1G06690.1 27.336 289 154 9 35 285 85 355 5.60e-20 89.7
Msa0744540 AT5G53580.1 24.211 285 161 9 44 290 80 347 3.38e-15 75.9
Msa0744540 AT1G60680.1 25.982 331 178 15 15 300 14 322 5.88e-14 72.0
Msa0744540 AT1G60750.1 25.532 282 160 12 44 300 50 306 4.56e-11 63.2

Find 72 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 5_1:+65385258 None:intergenic
TAATGTTGAAGCAAACTTAA+AGG 0.268143 5_1:+65385107 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.288960 5_1:+65385785 None:intergenic
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_1:-65385823 Msa0744540:CDS
ATAACTTGGAGAAAATAAAA+TGG 0.308072 5_1:+65385011 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.309651 5_1:+65385426 None:intergenic
CATTTGATGTCAAAGGTGTT+TGG 0.315130 5_1:-65385742 Msa0744540:CDS
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_1:+65386264 None:intergenic
ATTTGATGTCAAAGGTGTTT+GGG 0.354276 5_1:-65385741 Msa0744540:CDS
AAAATTTGTGTATCTTTGAT+TGG 0.361005 5_1:-65385256 Msa0744540:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_1:+65386310 None:intergenic
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_1:-65385695 Msa0744540:CDS
CAAACACCTTTGACATCAAA+TGG 0.378027 5_1:+65385743 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_1:+65385767 None:intergenic
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 5_1:+65385176 None:intergenic
AACACTACCCATGTTGTTGT+TGG 0.397673 5_1:+65386405 None:intergenic
CAGAGGACCTAATGAGGTTA+TGG 0.398751 5_1:-65385405 Msa0744540:CDS
TCATTCTCCATAACCTCATT+AGG 0.399791 5_1:+65385398 None:intergenic
TCTCTCCTTATCGTAGCTCT+TGG 0.404831 5_1:+65385286 None:intergenic
ATCATAGAGGTCATTGAGTC+CGG 0.411816 5_1:+65385160 None:intergenic
CTCTCCTTATCGTAGCTCTT+GGG 0.422362 5_1:+65385287 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_1:-65386193 Msa0744540:CDS
TTTGATACAGCTGCTGCATA+TGG 0.438772 5_1:-65386241 Msa0744540:CDS
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 5_1:+65385166 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_1:-65385194 Msa0744540:CDS
TGTTCCCAAGAGCTACGATA+AGG 0.457748 5_1:-65385291 Msa0744540:CDS
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 5_1:+65386152 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 5_1:-65385843 Msa0744540:CDS
ATCCCTGGACCAACCAAGCC+CGG 0.482612 5_1:-65385179 Msa0744540:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_1:+65385715 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.491850 5_1:-65386223 Msa0744540:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.498271 5_1:+65385425 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_1:-65385713 Msa0744540:CDS
TTGCACAAATATCTCTAAGA+TGG 0.504708 5_1:-65385337 Msa0744540:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_1:-65386206 Msa0744540:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_1:+65386311 None:intergenic
CAAAGGTGTTTGGGAATCCA+TGG 0.514742 5_1:-65385732 Msa0744540:CDS
CTCTTACCATTTGATGTCAA+AGG 0.516557 5_1:-65385749 Msa0744540:CDS
CAATTGAAGATGCCTGTAGT+TGG 0.517264 5_1:-65386346 Msa0744540:CDS
GTGTTTGTAAGAACCTTTGT+TGG 0.534052 5_1:+65386376 None:intergenic
GCTGATCCCATTCCAACTAC+AGG 0.540084 5_1:+65386334 None:intergenic
AAAGAGATTGCAGATGCTCA+TGG 0.540234 5_1:-65385368 Msa0744540:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 5_1:+65385177 None:intergenic
AATACTACTATGAAATAACT+TGG 0.542284 5_1:+65384997 None:intergenic
GAAGATGCCTGTAGTTGGAA+TGG 0.546457 5_1:-65386341 Msa0744540:CDS
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 5_1:+65385170 None:intergenic
TCTATATTTAGTCATCATAG+AGG 0.553846 5_1:+65385147 None:intergenic
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 5_1:-65385803 Msa0744540:CDS
CTTTGATTGGTCATTGACAA+AGG 0.559604 5_1:-65385243 Msa0744540:CDS
AAGATGCCTGTAGTTGGAAT+GGG 0.562876 5_1:-65386340 Msa0744540:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 5_1:+65385161 None:intergenic
GGACTTACTTGATTGACTGC+AGG 0.575026 5_1:+65385614 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 5_1:-65385508 Msa0744540:CDS
CTAAGATGGTTATACGAACA+AGG 0.585710 5_1:-65385323 Msa0744540:CDS
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_1:-65386274 Msa0744540:CDS
TGCAAGCAGAGGACCTAATG+AGG 0.592065 5_1:-65385411 Msa0744540:CDS
TAGTGTTGAAATTCCAACAA+AGG 0.595790 5_1:-65386389 Msa0744540:CDS
TTCTCAATCCAACAACAACA+TGG 0.599916 5_1:-65386413 Msa0744540:exon
AAATTGATTATTTAAAACAA+CGG 0.602105 5_1:+65385035 None:intergenic
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_1:+65386312 None:intergenic
ATGTTGTTGTTGGATTGAGA+AGG 0.624157 5_1:+65386415 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 5_1:+65386112 None:intergenic
CAGGAATAACAAGATGAGGA+TGG 0.629084 5_1:+65386116 None:intergenic
TTTCCTCAACGGGGAAAATG+CGG 0.632608 5_1:+65385436 None:intergenic
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 5_1:-65386218 Msa0744540:CDS
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 5_1:-65385422 Msa0744540:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 5_1:+65385800 None:intergenic
TGATTGGTCATTGACAAAGG+AGG 0.655967 5_1:-65385240 Msa0744540:CDS
TCTCAATCCAACAACAACAT+GGG 0.679881 5_1:-65386412 Msa0744540:exon
AGGTGTTTGGGAATCCATGG+AGG 0.700167 5_1:-65385729 Msa0744540:CDS
ATTGACTGCAGGAAGAACAG+TGG 0.718468 5_1:+65385625 None:intergenic
GCTTGCACCTTTCCTCAACG+GGG 0.723595 5_1:+65385427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTATTTAAAACAA+CGG + chr5_1:65386409-65386428 None:intergenic 10.0%
!!! AAATTGATTATTTAAAACAA+CGG + chr5_1:65386409-65386428 None:intergenic 10.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr5_1:65385292-65385311 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr5_1:65385291-65385310 Msa0744540:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr5_1:65385292-65385311 Msa0744540:CDS 20.0%
!! CAATGAACTCATATATTTAT+AGG - chr5_1:65385913-65385932 Msa0744540:intron 20.0%
!!! AATCAAAGATACACAAATTT+TGG + chr5_1:65386186-65386205 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG - chr5_1:65386185-65386204 Msa0744540:CDS 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG + chr5_1:65386433-65386452 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG + chr5_1:65386447-65386466 None:intergenic 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr5_1:65385292-65385311 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr5_1:65385291-65385310 Msa0744540:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr5_1:65385292-65385311 Msa0744540:CDS 20.0%
!! CAATGAACTCATATATTTAT+AGG - chr5_1:65385913-65385932 Msa0744540:intron 20.0%
!!! AATCAAAGATACACAAATTT+TGG + chr5_1:65386186-65386205 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG - chr5_1:65386185-65386204 Msa0744540:CDS 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG + chr5_1:65386433-65386452 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG + chr5_1:65386447-65386466 None:intergenic 20.0%
! GAGTATATTTAGATGACATT+TGG - chr5_1:65385397-65385416 Msa0744540:CDS 25.0%
! TCTAAACTTAGGTTTAATTG+AGG + chr5_1:65385851-65385870 None:intergenic 25.0%
! CAAGAAGTTAATCTAAACTT+AGG + chr5_1:65385862-65385881 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG - chr5_1:65385916-65385935 Msa0744540:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG + chr5_1:65386297-65386316 None:intergenic 25.0%
! TAATGTTGAAGCAAACTTAA+AGG + chr5_1:65386337-65386356 None:intergenic 25.0%
! GAGTATATTTAGATGACATT+TGG - chr5_1:65385397-65385416 Msa0744540:CDS 25.0%
! TCTAAACTTAGGTTTAATTG+AGG + chr5_1:65385851-65385870 None:intergenic 25.0%
! CAAGAAGTTAATCTAAACTT+AGG + chr5_1:65385862-65385881 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG - chr5_1:65385916-65385935 Msa0744540:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG + chr5_1:65386297-65386316 None:intergenic 25.0%
! TAATGTTGAAGCAAACTTAA+AGG + chr5_1:65386337-65386356 None:intergenic 25.0%
! TAGTGTTGAAATTCCAACAA+AGG - chr5_1:65385052-65385071 Msa0744540:three_prime_UTR 30.0%
ATTGGAAATGAAAACTTTCC+AGG + chr5_1:65385659-65385678 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - chr5_1:65385664-65385683 Msa0744540:CDS 30.0%
!! ATTTGATGTCAAAGGTGTTT+GGG - chr5_1:65385700-65385719 Msa0744540:CDS 30.0%
! TTGCACAAATATCTCTAAGA+TGG - chr5_1:65386104-65386123 Msa0744540:CDS 30.0%
! TAGTGTTGAAATTCCAACAA+AGG - chr5_1:65385052-65385071 Msa0744540:three_prime_UTR 30.0%
ATTGGAAATGAAAACTTTCC+AGG + chr5_1:65385659-65385678 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - chr5_1:65385664-65385683 Msa0744540:CDS 30.0%
!! ATTTGATGTCAAAGGTGTTT+GGG - chr5_1:65385700-65385719 Msa0744540:CDS 30.0%
! TTGCACAAATATCTCTAAGA+TGG - chr5_1:65386104-65386123 Msa0744540:CDS 30.0%
! ATGTTGTTGTTGGATTGAGA+AGG + chr5_1:65385029-65385048 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG - chr5_1:65385028-65385047 Msa0744540:three_prime_UTR 35.0%
TCTCAATCCAACAACAACAT+GGG - chr5_1:65385029-65385048 Msa0744540:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr5_1:65385068-65385087 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_1:65385132-65385151 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_1:65385133-65385152 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_1:65385134-65385153 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_1:65385167-65385186 Msa0744540:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_1:65385180-65385199 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_1:65385248-65385267 Msa0744540:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr5_1:65385347-65385366 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG - chr5_1:65385576-65385595 Msa0744540:intron 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr5_1:65385618-65385637 Msa0744540:intron 35.0%
CTCTTACCATTTGATGTCAA+AGG - chr5_1:65385692-65385711 Msa0744540:CDS 35.0%
CAAACACCTTTGACATCAAA+TGG + chr5_1:65385701-65385720 None:intergenic 35.0%
!! CATTTGATGTCAAAGGTGTT+TGG - chr5_1:65385699-65385718 Msa0744540:CDS 35.0%
TCATTCTCCATAACCTCATT+AGG + chr5_1:65386046-65386065 None:intergenic 35.0%
CTAAGATGGTTATACGAACA+AGG - chr5_1:65386118-65386137 Msa0744540:CDS 35.0%
! CTTTGATTGGTCATTGACAA+AGG - chr5_1:65386198-65386217 Msa0744540:CDS 35.0%
! ATACTTGATGCTTTTGAGCT+TGG - chr5_1:65386378-65386397 Msa0744540:CDS 35.0%
! ATGTTGTTGTTGGATTGAGA+AGG + chr5_1:65385029-65385048 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG - chr5_1:65385028-65385047 Msa0744540:three_prime_UTR 35.0%
TCTCAATCCAACAACAACAT+GGG - chr5_1:65385029-65385048 Msa0744540:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr5_1:65385068-65385087 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_1:65385132-65385151 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_1:65385133-65385152 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_1:65385134-65385153 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_1:65385167-65385186 Msa0744540:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_1:65385180-65385199 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_1:65385248-65385267 Msa0744540:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr5_1:65385347-65385366 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG - chr5_1:65385576-65385595 Msa0744540:intron 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr5_1:65385618-65385637 Msa0744540:intron 35.0%
CTCTTACCATTTGATGTCAA+AGG - chr5_1:65385692-65385711 Msa0744540:CDS 35.0%
CAAACACCTTTGACATCAAA+TGG + chr5_1:65385701-65385720 None:intergenic 35.0%
!! CATTTGATGTCAAAGGTGTT+TGG - chr5_1:65385699-65385718 Msa0744540:CDS 35.0%
TCATTCTCCATAACCTCATT+AGG + chr5_1:65386046-65386065 None:intergenic 35.0%
CTAAGATGGTTATACGAACA+AGG - chr5_1:65386118-65386137 Msa0744540:CDS 35.0%
! CTTTGATTGGTCATTGACAA+AGG - chr5_1:65386198-65386217 Msa0744540:CDS 35.0%
! ATACTTGATGCTTTTGAGCT+TGG - chr5_1:65386378-65386397 Msa0744540:CDS 35.0%
AACACTACCCATGTTGTTGT+TGG + chr5_1:65385039-65385058 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr5_1:65385095-65385114 Msa0744540:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr5_1:65385101-65385120 Msa0744540:three_prime_UTR 40.0%
TTTGATACAGCTGCTGCATA+TGG - chr5_1:65385200-65385219 Msa0744540:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr5_1:65385328-65385347 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_1:65385332-65385351 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG - chr5_1:65385598-65385617 Msa0744540:intron 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_1:65385677-65385696 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_1:65385729-65385748 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_1:65385728-65385747 Msa0744540:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_1:65385746-65385765 Msa0744540:CDS 40.0%
AAAGAGATTGCAGATGCTCA+TGG - chr5_1:65386073-65386092 Msa0744540:intron 40.0%
! TGATTGGTCATTGACAAAGG+AGG - chr5_1:65386201-65386220 Msa0744540:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr5_1:65386247-65386266 Msa0744540:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG + chr5_1:65386284-65386303 None:intergenic 40.0%
AACACTACCCATGTTGTTGT+TGG + chr5_1:65385039-65385058 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr5_1:65385095-65385114 Msa0744540:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr5_1:65385101-65385120 Msa0744540:three_prime_UTR 40.0%
TTTGATACAGCTGCTGCATA+TGG - chr5_1:65385200-65385219 Msa0744540:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr5_1:65385328-65385347 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_1:65385332-65385351 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG - chr5_1:65385598-65385617 Msa0744540:intron 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_1:65385677-65385696 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_1:65385729-65385748 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_1:65385728-65385747 Msa0744540:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_1:65385746-65385765 Msa0744540:CDS 40.0%
AAAGAGATTGCAGATGCTCA+TGG - chr5_1:65386073-65386092 Msa0744540:intron 40.0%
! TGATTGGTCATTGACAAAGG+AGG - chr5_1:65386201-65386220 Msa0744540:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr5_1:65386247-65386266 Msa0744540:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG + chr5_1:65386284-65386303 None:intergenic 40.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr5_1:65385100-65385119 Msa0744540:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr5_1:65385218-65385237 Msa0744540:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr5_1:65385235-65385254 Msa0744540:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr5_1:65385644-65385663 None:intergenic 45.0%
!! CAAAGGTGTTTGGGAATCCA+TGG - chr5_1:65385709-65385728 Msa0744540:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG + chr5_1:65385819-65385838 None:intergenic 45.0%
GGACTTACTTGATTGACTGC+AGG + chr5_1:65385830-65385849 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr5_1:65385949-65385968 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr5_1:65385971-65385990 Msa0744540:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr5_1:65386008-65386027 None:intergenic 45.0%
CAGAGGACCTAATGAGGTTA+TGG - chr5_1:65386036-65386055 Msa0744540:intron 45.0%
TGTTCCCAAGAGCTACGATA+AGG - chr5_1:65386150-65386169 Msa0744540:CDS 45.0%
CTCTCCTTATCGTAGCTCTT+GGG + chr5_1:65386157-65386176 None:intergenic 45.0%
TCTCTCCTTATCGTAGCTCT+TGG + chr5_1:65386158-65386177 None:intergenic 45.0%
TCATAGAGGTCATTGAGTCC+GGG + chr5_1:65386283-65386302 None:intergenic 45.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr5_1:65385100-65385119 Msa0744540:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr5_1:65385218-65385237 Msa0744540:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr5_1:65385235-65385254 Msa0744540:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr5_1:65385644-65385663 None:intergenic 45.0%
!! CAAAGGTGTTTGGGAATCCA+TGG - chr5_1:65385709-65385728 Msa0744540:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG + chr5_1:65385819-65385838 None:intergenic 45.0%
GGACTTACTTGATTGACTGC+AGG + chr5_1:65385830-65385849 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr5_1:65385949-65385968 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr5_1:65385971-65385990 Msa0744540:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr5_1:65386008-65386027 None:intergenic 45.0%
CAGAGGACCTAATGAGGTTA+TGG - chr5_1:65386036-65386055 Msa0744540:intron 45.0%
TGTTCCCAAGAGCTACGATA+AGG - chr5_1:65386150-65386169 Msa0744540:CDS 45.0%
CTCTCCTTATCGTAGCTCTT+GGG + chr5_1:65386157-65386176 None:intergenic 45.0%
TCTCTCCTTATCGTAGCTCT+TGG + chr5_1:65386158-65386177 None:intergenic 45.0%
TCATAGAGGTCATTGAGTCC+GGG + chr5_1:65386283-65386302 None:intergenic 45.0%
GCTGATCCCATTCCAACTAC+AGG + chr5_1:65385110-65385129 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - chr5_1:65385223-65385242 Msa0744540:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr5_1:65385712-65385731 Msa0744540:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_1:65385933-65385952 Msa0744540:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr5_1:65386002-65386021 Msa0744540:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr5_1:65386007-65386026 Msa0744540:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr5_1:65386018-65386037 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_1:65386019-65386038 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG - chr5_1:65386019-65386038 Msa0744540:intron 50.0%
TGCAAGCAGAGGACCTAATG+AGG - chr5_1:65386030-65386049 Msa0744540:intron 50.0%
GCTGATCCCATTCCAACTAC+AGG + chr5_1:65385110-65385129 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - chr5_1:65385223-65385242 Msa0744540:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr5_1:65385712-65385731 Msa0744540:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_1:65385933-65385952 Msa0744540:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr5_1:65386002-65386021 Msa0744540:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr5_1:65386007-65386026 Msa0744540:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr5_1:65386018-65386037 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_1:65386019-65386038 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG - chr5_1:65386019-65386038 Msa0744540:intron 50.0%
TGCAAGCAGAGGACCTAATG+AGG - chr5_1:65386030-65386049 Msa0744540:intron 50.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr5_1:65385638-65385657 Msa0744540:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr5_1:65386017-65386036 None:intergenic 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG + chr5_1:65386274-65386293 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr5_1:65385638-65385657 Msa0744540:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr5_1:65386017-65386036 None:intergenic 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG + chr5_1:65386274-65386293 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+CGG - chr5_1:65386262-65386281 Msa0744540:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG + chr5_1:65386278-65386297 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+CGG - chr5_1:65386262-65386281 Msa0744540:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG + chr5_1:65386278-65386297 None:intergenic 60.0%
! GTCCGGGCTTGGTTGGTCCA+GGG + chr5_1:65386267-65386286 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG + chr5_1:65386268-65386287 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG + chr5_1:65386267-65386286 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG + chr5_1:65386268-65386287 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 65384990 65386473 65384990 ID=Msa0744540;Name=Msa0744540
chr5_1 mRNA 65384990 65386473 65384990 ID=Msa0744540-mRNA-1;Parent=Msa0744540;Name=Msa0744540-mRNA-1;_AED=0.15;_eAED=0.15;_QI=57|1|1|1|1|1|3|164|312
chr5_1 exon 65384990 65385528 65384990 ID=Msa0744540-mRNA-1:exon:19468;Parent=Msa0744540-mRNA-1
chr5_1 exon 65385622 65385865 65385622 ID=Msa0744540-mRNA-1:exon:19467;Parent=Msa0744540-mRNA-1
chr5_1 exon 65386097 65386473 65386097 ID=Msa0744540-mRNA-1:exon:19466;Parent=Msa0744540-mRNA-1
chr5_1 five_prime_UTR 65386417 65386473 65386417 ID=Msa0744540-mRNA-1:five_prime_utr;Parent=Msa0744540-mRNA-1
chr5_1 CDS 65386097 65386416 65386097 ID=Msa0744540-mRNA-1:cds;Parent=Msa0744540-mRNA-1
chr5_1 CDS 65385622 65385865 65385622 ID=Msa0744540-mRNA-1:cds;Parent=Msa0744540-mRNA-1
chr5_1 CDS 65385154 65385528 65385154 ID=Msa0744540-mRNA-1:cds;Parent=Msa0744540-mRNA-1
chr5_1 three_prime_UTR 65384990 65385153 65384990 ID=Msa0744540-mRNA-1:three_prime_utr;Parent=Msa0744540-mRNA-1
Gene Sequence

>Msa0744540

ATGGGTAGTGTTGAAATTCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTAGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACAGCTGCTGCATATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGACCTTTTTGTTACTTCTAAACTTTGGGTTACTGAAAACCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTCAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGAGGACCTAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCTCATGGAAAGTCTGTTGCACAAATATCTCTAAGATGGTTATACGAACAAGGAGTCACTTTTGTTCCCAAGAGCTACGATAAGGAGAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAGGAGGATCATGAGAAGATTGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCCGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0744540

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*