AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480550 MtrunA17_Chr5g0447941 97.436 312 8 0 1 312 1 312 0.0 632
Msa0480550 MtrunA17_Chr5g0447951 97.115 312 9 0 1 312 1 312 0.0 630
Msa0480550 MtrunA17_Chr5g0447961 97.115 312 9 0 1 312 1 312 0.0 630
Msa0480550 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 3.18e-162 454
Msa0480550 MtrunA17_Chr1g0173621 62.623 305 111 3 1 302 1 305 2.03e-136 389
Msa0480550 MtrunA17_Chr6g0479981 49.505 303 146 5 1 300 1 299 5.75e-95 283
Msa0480550 MtrunA17_Chr6g0480011 49.186 307 143 8 1 300 1 301 9.92e-94 281
Msa0480550 MtrunA17_Chr6g0480021 48.039 306 125 7 19 311 16 300 1.68e-91 274
Msa0480550 MtrunA17_Chr8g0368921 42.254 284 161 2 19 300 15 297 4.15e-74 230
Msa0480550 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 2.93e-71 223
Msa0480550 MtrunA17_Chr4g0018921 40.702 285 164 4 18 300 12 293 6.42e-71 222
Msa0480550 MtrunA17_Chr8g0368931 42.708 288 154 4 19 302 15 295 1.77e-69 218
Msa0480550 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 4.24e-66 209
Msa0480550 MtrunA17_Chr4g0009581 42.295 305 148 6 19 312 16 303 4.08e-65 207
Msa0480550 MtrunA17_Chr4g0036261 58.125 160 66 1 139 297 1 160 8.12e-59 187
Msa0480550 MtrunA17_Chr7g0243551 38.321 274 161 5 20 292 23 289 7.22e-58 188
Msa0480550 MtrunA17_Chr4g0036051 38.816 304 171 6 18 310 9 308 4.00e-57 186
Msa0480550 MtrunA17_Chr4g0036301 52.353 170 71 3 151 311 1 169 2.72e-50 164
Msa0480550 MtrunA17_Chr4g0036321 51.765 170 72 3 151 311 1 169 6.82e-49 160
Msa0480550 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 9.95e-45 152
Msa0480550 MtrunA17_Chr6g0479811 45.133 113 57 2 191 300 1 111 5.90e-25 97.1
Msa0480550 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 6.66e-24 94.0
Msa0480550 MtrunA17_Chr4g0036311 48.352 91 45 2 19 107 16 106 5.66e-23 91.7
Msa0480550 MtrunA17_Chr4g0036251 51.111 90 38 2 19 107 16 100 1.11e-22 90.5
Msa0480550 MtrunA17_Chr3g0095421 26.510 298 147 11 34 285 73 344 4.29e-17 80.9
Msa0480550 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 2.27e-16 73.6
Msa0480550 MtrunA17_Chr3g0127491 22.789 294 178 9 36 294 71 350 4.13e-14 72.0
Msa0480550 MtrunA17_Chr7g0274071 25.347 288 151 11 41 289 52 314 5.50e-13 68.6
Msa0480550 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 5.77e-12 65.5
Msa0480550 MtrunA17_Chr1g0204651 23.301 309 166 10 24 289 29 309 7.53e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480550 AT1G59960.1 54.221 308 130 6 1 300 1 305 1.88e-113 331
Msa0480550 AT1G59950.1 55.903 288 117 5 20 300 15 299 1.60e-104 308
Msa0480550 AT2G37790.1 43.706 286 150 4 19 300 15 293 7.43e-77 238
Msa0480550 AT2G37770.2 44.056 286 149 4 19 300 15 293 3.45e-76 236
Msa0480550 AT5G62420.1 43.310 284 155 4 20 300 14 294 3.92e-73 228
Msa0480550 AT2G37760.4 44.014 284 146 4 19 299 15 288 6.74e-73 227
Msa0480550 AT2G37760.3 44.014 284 146 4 19 299 15 288 6.74e-73 227
Msa0480550 AT5G01670.1 42.254 284 155 6 19 300 23 299 2.89e-72 226
Msa0480550 AT2G37760.5 44.484 281 143 4 19 296 15 285 6.00e-72 224
Msa0480550 AT2G37760.2 43.972 282 145 4 19 297 15 286 3.57e-71 223
Msa0480550 AT2G37760.1 43.972 282 145 4 19 297 15 286 3.57e-71 223
Msa0480550 AT3G53880.1 41.696 283 160 3 19 300 15 293 2.82e-69 218
Msa0480550 AT3G53880.2 41.516 277 157 3 19 294 15 287 6.46e-67 212
Msa0480550 AT5G01670.2 38.585 311 155 7 19 300 23 326 2.59e-66 212
Msa0480550 AT2G21260.1 38.754 289 162 6 18 295 9 293 4.32e-65 207
Msa0480550 AT2G21250.1 37.500 304 175 6 18 310 9 308 9.45e-64 204
Msa0480550 AT2G37760.6 43.933 239 127 3 62 297 6 240 1.12e-58 189
Msa0480550 AT2G37760.7 43.933 239 127 3 62 297 6 240 1.12e-58 189
Msa0480550 AT2G37770.1 47.208 197 94 3 19 212 15 204 1.31e-53 177
Msa0480550 AT2G21250.2 41.546 207 110 5 18 217 9 211 8.26e-47 158
Msa0480550 AT2G21260.2 34.545 220 131 5 87 295 8 225 9.11e-40 140
Msa0480550 AT1G06690.1 27.458 295 146 10 35 285 85 355 2.35e-20 90.9
Msa0480550 AT5G53580.1 24.912 285 159 10 44 290 80 347 4.24e-15 75.5
Msa0480550 AT1G60680.1 26.101 318 171 14 25 300 27 322 1.05e-13 71.2
Msa0480550 AT1G60750.1 25.532 282 160 12 44 300 50 306 2.15e-11 64.3

Find 68 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 3_3:-85876109 None:intergenic
TTGCATTGCAAAACTCTCTA+AGG 0.274401 3_3:-85875893 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.287256 3_3:-85875582 None:intergenic
ATTATCAATGTTATTGTATT+GGG 0.287934 3_3:+85876329 Msa0480550:three_prime_UTR
TGGACTTGTACTTGATTCAT+TGG 0.300645 3_3:+85875544 Msa0480550:CDS
AATTATCAATGTTATTGTAT+TGG 0.323636 3_3:+85876328 Msa0480550:three_prime_UTR
GTGTCTATAACCTTGTTTGA+TGG 0.333209 3_3:-85875096 None:intergenic
CTTTGTCACTTCCAAACTTT+GGG 0.341927 3_3:+85875211 Msa0480550:CDS
AGGCCTGGCTTGGTTGGTCC+AGG 0.344379 3_3:-85876191 None:intergenic
AAAATTTGTGTATCTTTGAT+TGG 0.361005 3_3:+85876111 Msa0480550:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 3_3:-85875050 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 3_3:+85875625 Msa0480550:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 3_3:+85875672 Msa0480550:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 3_3:-85875624 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 3_3:-85875600 None:intergenic
TCTTTGTCACTTCCAAACTT+TGG 0.379540 3_3:+85875210 Msa0480550:CDS
TCATTCTCCATAACCTCATT+TGG 0.392662 3_3:-85875969 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 3_3:+85876030 Msa0480550:CDS
TCTTTCCTTATCATAACTCT+TGG 0.404407 3_3:-85876081 None:intergenic
CAGAGGACCAAATGAGGTTA+TGG 0.408273 3_3:+85875962 Msa0480550:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 3_3:+85875626 Msa0480550:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.422526 3_3:+85875167 Msa0480550:CDS
TGTTCCCAAGAGTTATGATA+AGG 0.428240 3_3:+85876076 Msa0480550:CDS
TCATTGAGGCCTGGCTTGGT+TGG 0.438358 3_3:-85876197 None:intergenic
CTTTCCTTATCATAACTCTT+GGG 0.442857 3_3:-85876080 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 3_3:+85876173 Msa0480550:CDS
GACTCTTCAACTAGACTACT+TGG 0.469433 3_3:+85875524 Msa0480550:CDS
GAGGTCATTGAGGCCTGGCT+TGG 0.476217 3_3:-85876201 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.483158 3_3:-85874983 None:intergenic
ATCCCTGGACCAACCAAGCC+AGG 0.483424 3_3:+85876188 Msa0480550:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 3_3:-85875652 None:intergenic
GGCCTGGCTTGGTTGGTCCA+GGG 0.485174 3_3:-85876190 None:intergenic
TGAATTACTTGATTGACTGC+TGG 0.489360 3_3:-85875753 None:intergenic
TTTGATACTGCTGCTGCGTA+TGG 0.491072 3_3:+85875119 Msa0480550:CDS
TATGGCTCAGAACAAGCTCT+TGG 0.492260 3_3:+85875137 Msa0480550:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 3_3:+85875654 Msa0480550:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 3_3:+85875154 Msa0480550:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 3_3:-85875049 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.513012 3_3:-85874984 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 3_3:+85875618 Msa0480550:CDS
GAAGATGCCTGTGGTTGGAA+TGG 0.533175 3_3:+85875019 Msa0480550:CDS
TCATAGAGGTCATTGAGGCC+TGG 0.545875 3_3:-85876206 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.552845 3_3:+85875020 Msa0480550:CDS
AAGGTTCTTACCAACACTCC+TGG 0.555463 3_3:+85874990 Msa0480550:CDS
CTGACATTTAGTCATCATAG+AGG 0.564328 3_3:-85876220 None:intergenic
CTTCAGTTGACCAGGAGTGT+TGG 0.569334 3_3:-85875000 None:intergenic
GCTGATCCCATTCCAACCAC+AGG 0.587516 3_3:-85875026 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 3_3:+85875086 Msa0480550:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 3_3:+85875635 Msa0480550:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 3_3:+85876044 Msa0480550:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.589452 3_3:-85875942 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.591438 3_3:+85875859 Msa0480550:intron
TGCAAGCAGAGGACCAAATG+AGG 0.592065 3_3:+85875956 Msa0480550:CDS
ACAGGCATCTTCAGTTGACC+AGG 0.593409 3_3:-85875008 None:intergenic
CAACTGAAGATGCCTGTGGT+TGG 0.604555 3_3:+85875014 Msa0480550:CDS
AGTCATCATAGAGGTCATTG+AGG 0.605914 3_3:-85876211 None:intergenic
TGGTCAACTGAAGATGCCTG+TGG 0.614136 3_3:+85875010 Msa0480550:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 3_3:-85875048 None:intergenic
TGGCCACTTAGTTCTCAACC+TGG 0.621982 3_3:+85875564 Msa0480550:CDS
TTTCCAGGTTGAGAACTAAG+TGG 0.629025 3_3:-85875567 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 3_3:+85875999 Msa0480550:CDS
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 3_3:+85875142 Msa0480550:CDS
AGAGCAGGAATAACAAGATG+AGG 0.638684 3_3:-85875248 None:intergenic
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 3_3:+85875945 Msa0480550:CDS
TTCAAATCTCGAAAGAAACA+AGG 0.648046 3_3:-85876307 None:intergenic
TAGTGTTGAAATCCCAACAA+AGG 0.659490 3_3:+85874971 Msa0480550:CDS
AGGTGTTTGGGAATCCATGG+AGG 0.719619 3_3:+85875638 Msa0480550:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 3_3:-85875742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATCAATGTTATTGTAT+TGG + chr3_3:85876328-85876347 Msa0480550:three_prime_UTR 15.0%
!! ATTATCAATGTTATTGTATT+GGG + chr3_3:85876329-85876348 Msa0480550:three_prime_UTR 15.0%
!! AATTATCAATGTTATTGTAT+TGG + chr3_3:85876328-85876347 Msa0480550:three_prime_UTR 15.0%
!! ATTATCAATGTTATTGTATT+GGG + chr3_3:85876329-85876348 Msa0480550:three_prime_UTR 15.0%
!!! TTATTTTTGTTGTTGTTGTT+GGG - chr3_3:85874939-85874958 None:intergenic 20.0%
!! AACAAAAATAACAACAACAT+GGG + chr3_3:85874948-85874967 Msa0480550:exon 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr3_3:85876112-85876131 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr3_3:85876111-85876130 Msa0480550:CDS 20.0%
!!! TTATTTTTGTTGTTGTTGTT+GGG - chr3_3:85874939-85874958 None:intergenic 20.0%
!! AACAAAAATAACAACAACAT+GGG + chr3_3:85874948-85874967 Msa0480550:exon 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr3_3:85876112-85876131 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr3_3:85876111-85876130 Msa0480550:CDS 20.0%
!!! GTTATTTTTGTTGTTGTTGT+TGG - chr3_3:85874940-85874959 None:intergenic 25.0%
! CAACAAAAATAACAACAACA+TGG + chr3_3:85874947-85874966 Msa0480550:exon 25.0%
! TACACTTATTGAGATTAAAC+TGG + chr3_3:85875482-85875501 Msa0480550:intron 25.0%
! CAAGAAGTTAATCAAAACTT+AGG - chr3_3:85875788-85875807 None:intergenic 25.0%
! CAATGAACTCATATATTTAC+AGG + chr3_3:85875839-85875858 Msa0480550:intron 25.0%
!!! GTTATTTTTGTTGTTGTTGT+TGG - chr3_3:85874940-85874959 None:intergenic 25.0%
! CAACAAAAATAACAACAACA+TGG + chr3_3:85874947-85874966 Msa0480550:exon 25.0%
! TACACTTATTGAGATTAAAC+TGG + chr3_3:85875482-85875501 Msa0480550:intron 25.0%
! CAAGAAGTTAATCAAAACTT+AGG - chr3_3:85875788-85875807 None:intergenic 25.0%
! CAATGAACTCATATATTTAC+AGG + chr3_3:85875839-85875858 Msa0480550:intron 25.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr3_3:85875225-85875244 None:intergenic 30.0%
ATTGGAAATGAAAACTTTCC+AGG - chr3_3:85875585-85875604 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + chr3_3:85875590-85875609 Msa0480550:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr3_3:85875626-85875645 Msa0480550:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr3_3:85875842-85875861 Msa0480550:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr3_3:85876030-85876049 Msa0480550:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr3_3:85876083-85876102 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr3_3:85876084-85876103 None:intergenic 30.0%
TTCAAATCTCGAAAGAAACA+AGG - chr3_3:85876310-85876329 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr3_3:85875225-85875244 None:intergenic 30.0%
ATTGGAAATGAAAACTTTCC+AGG - chr3_3:85875585-85875604 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + chr3_3:85875590-85875609 Msa0480550:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr3_3:85875626-85875645 Msa0480550:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr3_3:85875842-85875861 Msa0480550:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr3_3:85876030-85876049 Msa0480550:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr3_3:85876083-85876102 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr3_3:85876084-85876103 None:intergenic 30.0%
TTCAAATCTCGAAAGAAACA+AGG - chr3_3:85876310-85876329 None:intergenic 30.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr3_3:85874971-85874990 Msa0480550:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr3_3:85874986-85875005 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr3_3:85875051-85875070 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr3_3:85875052-85875071 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr3_3:85875053-85875072 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr3_3:85875086-85875105 Msa0480550:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr3_3:85875099-85875118 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr3_3:85875167-85875186 Msa0480550:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr3_3:85875210-85875229 Msa0480550:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr3_3:85875211-85875230 Msa0480550:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr3_3:85875266-85875285 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr3_3:85875544-85875563 Msa0480550:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr3_3:85875618-85875637 Msa0480550:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr3_3:85875627-85875646 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr3_3:85875625-85875644 Msa0480550:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr3_3:85875756-85875775 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr3_3:85875896-85875915 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr3_3:85875897-85875916 Msa0480550:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr3_3:85875972-85875991 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr3_3:85876044-85876063 Msa0480550:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr3_3:85876076-85876095 Msa0480550:CDS 35.0%
CTGACATTTAGTCATCATAG+AGG - chr3_3:85876223-85876242 None:intergenic 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr3_3:85874971-85874990 Msa0480550:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr3_3:85874986-85875005 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr3_3:85875051-85875070 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr3_3:85875052-85875071 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr3_3:85875053-85875072 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr3_3:85875086-85875105 Msa0480550:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr3_3:85875099-85875118 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr3_3:85875167-85875186 Msa0480550:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr3_3:85875210-85875229 Msa0480550:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr3_3:85875211-85875230 Msa0480550:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr3_3:85875266-85875285 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr3_3:85875544-85875563 Msa0480550:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr3_3:85875618-85875637 Msa0480550:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr3_3:85875627-85875646 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr3_3:85875625-85875644 Msa0480550:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr3_3:85875756-85875775 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr3_3:85875896-85875915 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr3_3:85875897-85875916 Msa0480550:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr3_3:85875972-85875991 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr3_3:85876044-85876063 Msa0480550:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr3_3:85876076-85876095 Msa0480550:CDS 35.0%
CTGACATTTAGTCATCATAG+AGG - chr3_3:85876223-85876242 None:intergenic 35.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr3_3:85874987-85875006 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr3_3:85875251-85875270 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr3_3:85875502-85875521 Msa0480550:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr3_3:85875524-85875543 Msa0480550:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr3_3:85875570-85875589 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr3_3:85875603-85875622 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr3_3:85875655-85875674 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr3_3:85875654-85875673 Msa0480550:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr3_3:85875672-85875691 Msa0480550:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr3_3:85875999-85876018 Msa0480550:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr3_3:85876173-85876192 Msa0480550:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr3_3:85876214-85876233 None:intergenic 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr3_3:85874987-85875006 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr3_3:85875251-85875270 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr3_3:85875502-85875521 Msa0480550:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr3_3:85875524-85875543 Msa0480550:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr3_3:85875570-85875589 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr3_3:85875603-85875622 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr3_3:85875655-85875674 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr3_3:85875654-85875673 Msa0480550:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr3_3:85875672-85875691 Msa0480550:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr3_3:85875999-85876018 Msa0480550:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr3_3:85876173-85876192 Msa0480550:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr3_3:85876214-85876233 None:intergenic 40.0%
AAGGTTCTTACCAACACTCC+TGG + chr3_3:85874990-85875009 Msa0480550:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr3_3:85875020-85875039 Msa0480550:CDS 45.0%
TTTGATACTGCTGCTGCGTA+TGG + chr3_3:85875119-85875138 Msa0480550:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + chr3_3:85875137-85875156 Msa0480550:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr3_3:85875154-85875173 Msa0480550:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr3_3:85875635-85875654 Msa0480550:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr3_3:85875745-85875764 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr3_3:85875875-85875894 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr3_3:85875962-85875981 Msa0480550:CDS 45.0%
AAGGTTCTTACCAACACTCC+TGG + chr3_3:85874990-85875009 Msa0480550:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr3_3:85875020-85875039 Msa0480550:CDS 45.0%
TTTGATACTGCTGCTGCGTA+TGG + chr3_3:85875119-85875138 Msa0480550:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + chr3_3:85875137-85875156 Msa0480550:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr3_3:85875154-85875173 Msa0480550:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr3_3:85875635-85875654 Msa0480550:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr3_3:85875745-85875764 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr3_3:85875875-85875894 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr3_3:85875962-85875981 Msa0480550:CDS 45.0%
! CTTCAGTTGACCAGGAGTGT+TGG - chr3_3:85875003-85875022 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG - chr3_3:85875011-85875030 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG + chr3_3:85875010-85875029 Msa0480550:CDS 50.0%
CAACTGAAGATGCCTGTGGT+TGG + chr3_3:85875014-85875033 Msa0480550:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr3_3:85875019-85875038 Msa0480550:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + chr3_3:85875142-85875161 Msa0480550:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr3_3:85875564-85875583 Msa0480550:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr3_3:85875638-85875657 Msa0480550:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr3_3:85875859-85875878 Msa0480550:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr3_3:85875928-85875947 Msa0480550:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr3_3:85875945-85875964 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr3_3:85875945-85875964 Msa0480550:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr3_3:85875956-85875975 Msa0480550:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr3_3:85876209-85876228 None:intergenic 50.0%
! CTTCAGTTGACCAGGAGTGT+TGG - chr3_3:85875003-85875022 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG - chr3_3:85875011-85875030 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG + chr3_3:85875010-85875029 Msa0480550:CDS 50.0%
CAACTGAAGATGCCTGTGGT+TGG + chr3_3:85875014-85875033 Msa0480550:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr3_3:85875019-85875038 Msa0480550:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + chr3_3:85875142-85875161 Msa0480550:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr3_3:85875564-85875583 Msa0480550:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr3_3:85875638-85875657 Msa0480550:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr3_3:85875859-85875878 Msa0480550:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr3_3:85875928-85875947 Msa0480550:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr3_3:85875945-85875964 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr3_3:85875945-85875964 Msa0480550:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr3_3:85875956-85875975 Msa0480550:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr3_3:85876209-85876228 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr3_3:85875029-85875048 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr3_3:85875933-85875952 Msa0480550:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr3_3:85876200-85876219 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr3_3:85875029-85875048 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr3_3:85875933-85875952 Msa0480550:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr3_3:85876200-85876219 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+AGG + chr3_3:85876188-85876207 Msa0480550:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr3_3:85876204-85876223 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+AGG + chr3_3:85876188-85876207 Msa0480550:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr3_3:85876204-85876223 None:intergenic 60.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr3_3:85876193-85876212 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr3_3:85876194-85876213 None:intergenic 65.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr3_3:85876193-85876212 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr3_3:85876194-85876213 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85874904 85876383 85874904 ID=Msa0480550;Name=Msa0480550
chr3_3 mRNA 85874904 85876383 85874904 ID=Msa0480550-mRNA-1;Parent=Msa0480550;Name=Msa0480550-mRNA-1;_AED=0.27;_eAED=0.27;_QI=62|1|1|1|1|1|3|148|312
chr3_3 exon 85874904 85875285 85874904 ID=Msa0480550-mRNA-1:exon:24766;Parent=Msa0480550-mRNA-1
chr3_3 exon 85875524 85875767 85875524 ID=Msa0480550-mRNA-1:exon:24767;Parent=Msa0480550-mRNA-1
chr3_3 exon 85875861 85876383 85875861 ID=Msa0480550-mRNA-1:exon:24768;Parent=Msa0480550-mRNA-1
chr3_3 five_prime_UTR 85874904 85874965 85874904 ID=Msa0480550-mRNA-1:five_prime_utr;Parent=Msa0480550-mRNA-1
chr3_3 CDS 85874966 85875285 85874966 ID=Msa0480550-mRNA-1:cds;Parent=Msa0480550-mRNA-1
chr3_3 CDS 85875524 85875767 85875524 ID=Msa0480550-mRNA-1:cds;Parent=Msa0480550-mRNA-1
chr3_3 CDS 85875861 85876235 85875861 ID=Msa0480550-mRNA-1:cds;Parent=Msa0480550-mRNA-1
chr3_3 three_prime_UTR 85876236 85876383 85876236 ID=Msa0480550-mRNA-1:three_prime_utr;Parent=Msa0480550-mRNA-1
Gene Sequence

>Msa0480550

ATGGGTAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACTCCTGGTCAACTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCGTATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGAACTCTTTGTCACTTCCAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTACAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAACCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAACCTTAGAGAGTTTTGCAATGCAAATGGAATAGTGTTAACTGCGTTTTCGCCGTTGAGGAAAGGTGCAAGCAGAGGACCAAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGTTATGATAAGGAAAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATCGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCAGGCCTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0480550

MGSVEIPTKVLTNTPGQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKNLREFCNANGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*