AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480530 MtrunA17_Chr5g0447941 98.397 312 5 0 1 312 1 312 0.0 637
Msa0480530 MtrunA17_Chr5g0447951 98.077 312 6 0 1 312 1 312 0.0 636
Msa0480530 MtrunA17_Chr5g0447961 98.077 312 6 0 1 312 1 312 0.0 636
Msa0480530 MtrunA17_Chr3g0121001 68.182 308 97 1 6 312 7 314 5.74e-162 453
Msa0480530 MtrunA17_Chr1g0173621 62.951 305 110 3 1 302 1 305 1.22e-137 392
Msa0480530 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 3.91e-96 286
Msa0480530 MtrunA17_Chr6g0480011 49.186 307 143 8 1 300 1 301 2.46e-94 282
Msa0480530 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 2.79e-92 276
Msa0480530 MtrunA17_Chr8g0368921 42.958 284 159 2 19 300 15 297 2.41e-75 233
Msa0480530 MtrunA17_Chr4g0018921 41.754 285 161 4 18 300 12 293 1.38e-73 229
Msa0480530 MtrunA17_Chr8g0368931 43.403 288 152 4 19 302 15 295 1.08e-70 221
Msa0480530 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 1.15e-70 221
Msa0480530 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 3.10e-66 210
Msa0480530 MtrunA17_Chr4g0009581 41.639 305 150 6 19 312 16 303 1.02e-63 203
Msa0480530 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 1.18e-59 189
Msa0480530 MtrunA17_Chr4g0036051 39.414 307 171 6 15 310 6 308 3.90e-59 192
Msa0480530 MtrunA17_Chr7g0243551 38.686 274 160 5 20 292 23 289 1.16e-58 190
Msa0480530 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 5.33e-51 166
Msa0480530 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 1.05e-49 163
Msa0480530 MtrunA17_Chr4g0009621 42.466 219 114 2 82 300 1 207 8.19e-44 149
Msa0480530 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 1.09e-25 99.0
Msa0480530 MtrunA17_Chr4g0036291 50.000 90 43 2 20 107 17 106 2.17e-23 92.4
Msa0480530 MtrunA17_Chr4g0036311 43.119 109 57 3 1 107 1 106 1.06e-22 90.9
Msa0480530 MtrunA17_Chr4g0036251 46.296 108 49 3 1 107 1 100 1.34e-22 90.1
Msa0480530 MtrunA17_Chr3g0095421 26.140 329 159 13 15 285 42 344 4.09e-17 80.9
Msa0480530 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 2.20e-16 73.6
Msa0480530 MtrunA17_Chr3g0127491 22.867 293 179 8 36 294 71 350 5.73e-14 71.6
Msa0480530 MtrunA17_Chr7g0274071 25.347 288 151 11 41 289 52 314 4.78e-13 68.9
Msa0480530 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 3.30e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480530 AT1G59960.1 53.571 308 132 6 1 300 1 305 7.12e-112 327
Msa0480530 AT1G59950.1 55.903 288 117 5 20 300 15 299 1.25e-104 308
Msa0480530 AT2G37770.2 44.755 286 147 4 19 300 15 293 1.18e-77 239
Msa0480530 AT2G37790.1 43.357 286 151 4 19 300 15 293 2.17e-76 236
Msa0480530 AT5G62420.1 43.662 284 154 4 20 300 14 294 1.13e-73 229
Msa0480530 AT5G01670.1 42.254 284 155 6 19 300 23 299 1.14e-72 227
Msa0480530 AT2G37760.4 43.662 284 147 4 19 299 15 288 4.25e-72 224
Msa0480530 AT2G37760.3 43.662 284 147 4 19 299 15 288 4.25e-72 224
Msa0480530 AT2G37760.5 44.128 281 144 4 19 296 15 285 3.04e-71 223
Msa0480530 AT2G37760.2 43.617 282 146 4 19 297 15 286 2.42e-70 221
Msa0480530 AT2G37760.1 43.617 282 146 4 19 297 15 286 2.42e-70 221
Msa0480530 AT3G53880.1 42.049 283 159 3 19 300 15 293 9.88e-70 219
Msa0480530 AT3G53880.2 42.143 280 151 4 19 294 15 287 2.47e-67 213
Msa0480530 AT2G21260.1 39.384 292 162 6 15 295 6 293 4.64e-67 212
Msa0480530 AT5G01670.2 38.585 311 155 7 19 300 23 326 1.21e-66 213
Msa0480530 AT2G21250.1 38.111 307 175 6 15 310 6 308 8.47e-66 209
Msa0480530 AT2G37760.6 43.515 239 128 3 62 297 6 240 8.08e-58 187
Msa0480530 AT2G37760.7 43.515 239 128 3 62 297 6 240 8.08e-58 187
Msa0480530 AT2G37770.1 48.223 197 92 3 19 212 15 204 6.54e-55 180
Msa0480530 AT2G21250.2 42.381 210 110 5 15 217 6 211 9.95e-49 163
Msa0480530 AT2G21260.2 35.000 220 130 5 87 295 8 225 1.66e-40 142
Msa0480530 AT1G06690.1 27.336 289 154 9 35 285 85 355 5.60e-20 89.7
Msa0480530 AT5G53580.1 24.211 285 161 9 44 290 80 347 3.38e-15 75.9
Msa0480530 AT1G60680.1 25.982 331 178 15 15 300 14 322 5.88e-14 72.0
Msa0480530 AT1G60750.1 25.532 282 160 12 44 300 50 306 4.56e-11 63.2

Find 72 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 3_3:+85865553 None:intergenic
TAATGTTGAAGCAAACTTAA+AGG 0.268143 3_3:+85865402 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.288960 3_3:+85866080 None:intergenic
TGGACTTGTACTTGATTCAT+TGG 0.300645 3_3:-85866118 Msa0480530:CDS
ATAACTTGGAGAAAATAAAA+TGG 0.308072 3_3:+85865306 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.309651 3_3:+85865721 None:intergenic
CATTTGATGTCAAAGGTGTT+TGG 0.315130 3_3:-85866037 Msa0480530:CDS
GTGTCTATAACCTTGTTTGA+TGG 0.333209 3_3:+85866559 None:intergenic
ATTTGATGTCAAAGGTGTTT+GGG 0.354276 3_3:-85866036 Msa0480530:CDS
AAAATTTGTGTATCTTTGAT+TGG 0.361005 3_3:-85865551 Msa0480530:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 3_3:+85866605 None:intergenic
CTTGGACTCACTAAAGCTAT+TGG 0.375778 3_3:-85865990 Msa0480530:CDS
CAAACACCTTTGACATCAAA+TGG 0.378027 3_3:+85866038 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 3_3:+85866062 None:intergenic
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 3_3:+85865471 None:intergenic
AACACTACCCATGTTGTTGT+TGG 0.397673 3_3:+85866700 None:intergenic
CAGAGGACCTAATGAGGTTA+TGG 0.398751 3_3:-85865700 Msa0480530:CDS
TCATTCTCCATAACCTCATT+AGG 0.399791 3_3:+85865693 None:intergenic
TCTCTCCTTATCGTAGCTCT+TGG 0.404831 3_3:+85865581 None:intergenic
ATCATAGAGGTCATTGAGTC+CGG 0.411816 3_3:+85865455 None:intergenic
CTCTCCTTATCGTAGCTCTT+GGG 0.422362 3_3:+85865582 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.422526 3_3:-85866488 Msa0480530:CDS
TTTGATACAGCTGCTGCATA+TGG 0.438772 3_3:-85866536 Msa0480530:CDS
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 3_3:+85865461 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 3_3:-85865489 Msa0480530:CDS
TGTTCCCAAGAGCTACGATA+AGG 0.457748 3_3:-85865586 Msa0480530:CDS
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 3_3:+85866447 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 3_3:-85866138 Msa0480530:CDS
ATCCCTGGACCAACCAAGCC+CGG 0.482612 3_3:-85865474 Msa0480530:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 3_3:+85866010 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.491850 3_3:-85866518 Msa0480530:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.498271 3_3:+85865720 None:intergenic
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 3_3:-85866008 Msa0480530:CDS
TTGCACAAATATCTCTAAGA+TGG 0.504708 3_3:-85865632 Msa0480530:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 3_3:-85866501 Msa0480530:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 3_3:+85866606 None:intergenic
CAAAGGTGTTTGGGAATCCA+TGG 0.514742 3_3:-85866027 Msa0480530:CDS
CTCTTACCATTTGATGTCAA+AGG 0.516557 3_3:-85866044 Msa0480530:CDS
CAATTGAAGATGCCTGTAGT+TGG 0.517264 3_3:-85866641 Msa0480530:CDS
GTGTTTGTAAGAACCTTTGT+TGG 0.534052 3_3:+85866671 None:intergenic
GCTGATCCCATTCCAACTAC+AGG 0.540084 3_3:+85866629 None:intergenic
AAAGAGATTGCAGATGCTCA+TGG 0.540234 3_3:-85865663 Msa0480530:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 3_3:+85865472 None:intergenic
AATACTACTATGAAATAACT+TGG 0.542284 3_3:+85865292 None:intergenic
GAAGATGCCTGTAGTTGGAA+TGG 0.546457 3_3:-85866636 Msa0480530:CDS
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 3_3:+85865465 None:intergenic
TCTATATTTAGTCATCATAG+AGG 0.553846 3_3:+85865442 None:intergenic
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 3_3:-85866098 Msa0480530:CDS
CTTTGATTGGTCATTGACAA+AGG 0.559604 3_3:-85865538 Msa0480530:CDS
AAGATGCCTGTAGTTGGAAT+GGG 0.562876 3_3:-85866635 Msa0480530:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 3_3:+85865456 None:intergenic
GGACTTACTTGATTGACTGC+AGG 0.575026 3_3:+85865909 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.584406 3_3:-85865803 Msa0480530:CDS
CTAAGATGGTTATACGAACA+AGG 0.585710 3_3:-85865618 Msa0480530:CDS
ATCATTGAAGCCATCAAACA+AGG 0.587661 3_3:-85866569 Msa0480530:CDS
TGCAAGCAGAGGACCTAATG+AGG 0.592065 3_3:-85865706 Msa0480530:CDS
TAGTGTTGAAATTCCAACAA+AGG 0.595790 3_3:-85866684 Msa0480530:CDS
TTCTCAATCCAACAACAACA+TGG 0.599916 3_3:-85866708 Msa0480530:exon
AAATTGATTATTTAAAACAA+CGG 0.602105 3_3:+85865330 None:intergenic
TTTCTTACATGTGAAGTCAG+GGG 0.620409 3_3:+85866607 None:intergenic
ATGTTGTTGTTGGATTGAGA+AGG 0.624157 3_3:+85866710 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 3_3:+85866407 None:intergenic
CAGGAATAACAAGATGAGGA+TGG 0.629084 3_3:+85866411 None:intergenic
TTTCCTCAACGGGGAAAATG+CGG 0.632608 3_3:+85865731 None:intergenic
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 3_3:-85866513 Msa0480530:CDS
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 3_3:-85865717 Msa0480530:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 3_3:+85866095 None:intergenic
TGATTGGTCATTGACAAAGG+AGG 0.655967 3_3:-85865535 Msa0480530:CDS
TCTCAATCCAACAACAACAT+GGG 0.679881 3_3:-85866707 Msa0480530:exon
AGGTGTTTGGGAATCCATGG+AGG 0.700167 3_3:-85866024 Msa0480530:CDS
ATTGACTGCAGGAAGAACAG+TGG 0.718468 3_3:+85865920 None:intergenic
GCTTGCACCTTTCCTCAACG+GGG 0.723595 3_3:+85865722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTATTTAAAACAA+CGG + chr3_3:85866704-85866723 None:intergenic 10.0%
!!! AAATTGATTATTTAAAACAA+CGG + chr3_3:85866704-85866723 None:intergenic 10.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr3_3:85865587-85865606 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr3_3:85865586-85865605 Msa0480530:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr3_3:85865587-85865606 Msa0480530:CDS 20.0%
!! CAATGAACTCATATATTTAT+AGG - chr3_3:85866208-85866227 Msa0480530:intron 20.0%
!!! AATCAAAGATACACAAATTT+TGG + chr3_3:85866481-85866500 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG - chr3_3:85866480-85866499 Msa0480530:CDS 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG + chr3_3:85866728-85866747 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG + chr3_3:85866742-85866761 None:intergenic 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG + chr3_3:85865587-85865606 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG - chr3_3:85865586-85865605 Msa0480530:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG - chr3_3:85865587-85865606 Msa0480530:CDS 20.0%
!! CAATGAACTCATATATTTAT+AGG - chr3_3:85866208-85866227 Msa0480530:intron 20.0%
!!! AATCAAAGATACACAAATTT+TGG + chr3_3:85866481-85866500 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG - chr3_3:85866480-85866499 Msa0480530:CDS 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG + chr3_3:85866728-85866747 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG + chr3_3:85866742-85866761 None:intergenic 20.0%
! GAGTATATTTAGATGACATT+TGG - chr3_3:85865692-85865711 Msa0480530:CDS 25.0%
! TCTAAACTTAGGTTTAATTG+AGG + chr3_3:85866146-85866165 None:intergenic 25.0%
! CAAGAAGTTAATCTAAACTT+AGG + chr3_3:85866157-85866176 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG - chr3_3:85866211-85866230 Msa0480530:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG + chr3_3:85866592-85866611 None:intergenic 25.0%
! TAATGTTGAAGCAAACTTAA+AGG + chr3_3:85866632-85866651 None:intergenic 25.0%
! GAGTATATTTAGATGACATT+TGG - chr3_3:85865692-85865711 Msa0480530:CDS 25.0%
! TCTAAACTTAGGTTTAATTG+AGG + chr3_3:85866146-85866165 None:intergenic 25.0%
! CAAGAAGTTAATCTAAACTT+AGG + chr3_3:85866157-85866176 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG - chr3_3:85866211-85866230 Msa0480530:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG + chr3_3:85866592-85866611 None:intergenic 25.0%
! TAATGTTGAAGCAAACTTAA+AGG + chr3_3:85866632-85866651 None:intergenic 25.0%
! TAGTGTTGAAATTCCAACAA+AGG - chr3_3:85865347-85865366 Msa0480530:three_prime_UTR 30.0%
ATTGGAAATGAAAACTTTCC+AGG + chr3_3:85865954-85865973 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - chr3_3:85865959-85865978 Msa0480530:CDS 30.0%
!! ATTTGATGTCAAAGGTGTTT+GGG - chr3_3:85865995-85866014 Msa0480530:CDS 30.0%
! TTGCACAAATATCTCTAAGA+TGG - chr3_3:85866399-85866418 Msa0480530:CDS 30.0%
! TAGTGTTGAAATTCCAACAA+AGG - chr3_3:85865347-85865366 Msa0480530:three_prime_UTR 30.0%
ATTGGAAATGAAAACTTTCC+AGG + chr3_3:85865954-85865973 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - chr3_3:85865959-85865978 Msa0480530:CDS 30.0%
!! ATTTGATGTCAAAGGTGTTT+GGG - chr3_3:85865995-85866014 Msa0480530:CDS 30.0%
! TTGCACAAATATCTCTAAGA+TGG - chr3_3:85866399-85866418 Msa0480530:CDS 30.0%
! ATGTTGTTGTTGGATTGAGA+AGG + chr3_3:85865324-85865343 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG - chr3_3:85865323-85865342 Msa0480530:three_prime_UTR 35.0%
TCTCAATCCAACAACAACAT+GGG - chr3_3:85865324-85865343 Msa0480530:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr3_3:85865363-85865382 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr3_3:85865427-85865446 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr3_3:85865428-85865447 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr3_3:85865429-85865448 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr3_3:85865462-85865481 Msa0480530:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr3_3:85865475-85865494 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr3_3:85865543-85865562 Msa0480530:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr3_3:85865642-85865661 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG - chr3_3:85865871-85865890 Msa0480530:intron 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr3_3:85865913-85865932 Msa0480530:intron 35.0%
CTCTTACCATTTGATGTCAA+AGG - chr3_3:85865987-85866006 Msa0480530:CDS 35.0%
CAAACACCTTTGACATCAAA+TGG + chr3_3:85865996-85866015 None:intergenic 35.0%
!! CATTTGATGTCAAAGGTGTT+TGG - chr3_3:85865994-85866013 Msa0480530:CDS 35.0%
TCATTCTCCATAACCTCATT+AGG + chr3_3:85866341-85866360 None:intergenic 35.0%
CTAAGATGGTTATACGAACA+AGG - chr3_3:85866413-85866432 Msa0480530:CDS 35.0%
! CTTTGATTGGTCATTGACAA+AGG - chr3_3:85866493-85866512 Msa0480530:CDS 35.0%
! ATACTTGATGCTTTTGAGCT+TGG - chr3_3:85866673-85866692 Msa0480530:CDS 35.0%
! ATGTTGTTGTTGGATTGAGA+AGG + chr3_3:85865324-85865343 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG - chr3_3:85865323-85865342 Msa0480530:three_prime_UTR 35.0%
TCTCAATCCAACAACAACAT+GGG - chr3_3:85865324-85865343 Msa0480530:three_prime_UTR 35.0%
GTGTTTGTAAGAACCTTTGT+TGG + chr3_3:85865363-85865382 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr3_3:85865427-85865446 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr3_3:85865428-85865447 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr3_3:85865429-85865448 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr3_3:85865462-85865481 Msa0480530:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr3_3:85865475-85865494 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr3_3:85865543-85865562 Msa0480530:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG + chr3_3:85865642-85865661 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG - chr3_3:85865871-85865890 Msa0480530:intron 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr3_3:85865913-85865932 Msa0480530:intron 35.0%
CTCTTACCATTTGATGTCAA+AGG - chr3_3:85865987-85866006 Msa0480530:CDS 35.0%
CAAACACCTTTGACATCAAA+TGG + chr3_3:85865996-85866015 None:intergenic 35.0%
!! CATTTGATGTCAAAGGTGTT+TGG - chr3_3:85865994-85866013 Msa0480530:CDS 35.0%
TCATTCTCCATAACCTCATT+AGG + chr3_3:85866341-85866360 None:intergenic 35.0%
CTAAGATGGTTATACGAACA+AGG - chr3_3:85866413-85866432 Msa0480530:CDS 35.0%
! CTTTGATTGGTCATTGACAA+AGG - chr3_3:85866493-85866512 Msa0480530:CDS 35.0%
! ATACTTGATGCTTTTGAGCT+TGG - chr3_3:85866673-85866692 Msa0480530:CDS 35.0%
AACACTACCCATGTTGTTGT+TGG + chr3_3:85865334-85865353 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr3_3:85865390-85865409 Msa0480530:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr3_3:85865396-85865415 Msa0480530:three_prime_UTR 40.0%
TTTGATACAGCTGCTGCATA+TGG - chr3_3:85865495-85865514 Msa0480530:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr3_3:85865623-85865642 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr3_3:85865627-85865646 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG - chr3_3:85865893-85865912 Msa0480530:intron 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr3_3:85865972-85865991 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr3_3:85866024-85866043 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr3_3:85866023-85866042 Msa0480530:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr3_3:85866041-85866060 Msa0480530:CDS 40.0%
AAAGAGATTGCAGATGCTCA+TGG - chr3_3:85866368-85866387 Msa0480530:intron 40.0%
! TGATTGGTCATTGACAAAGG+AGG - chr3_3:85866496-85866515 Msa0480530:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr3_3:85866542-85866561 Msa0480530:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG + chr3_3:85866579-85866598 None:intergenic 40.0%
AACACTACCCATGTTGTTGT+TGG + chr3_3:85865334-85865353 None:intergenic 40.0%
CAATTGAAGATGCCTGTAGT+TGG - chr3_3:85865390-85865409 Msa0480530:three_prime_UTR 40.0%
AAGATGCCTGTAGTTGGAAT+GGG - chr3_3:85865396-85865415 Msa0480530:three_prime_UTR 40.0%
TTTGATACAGCTGCTGCATA+TGG - chr3_3:85865495-85865514 Msa0480530:CDS 40.0%
CAGGAATAACAAGATGAGGA+TGG + chr3_3:85865623-85865642 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr3_3:85865627-85865646 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG - chr3_3:85865893-85865912 Msa0480530:intron 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr3_3:85865972-85865991 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr3_3:85866024-85866043 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr3_3:85866023-85866042 Msa0480530:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr3_3:85866041-85866060 Msa0480530:CDS 40.0%
AAAGAGATTGCAGATGCTCA+TGG - chr3_3:85866368-85866387 Msa0480530:intron 40.0%
! TGATTGGTCATTGACAAAGG+AGG - chr3_3:85866496-85866515 Msa0480530:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr3_3:85866542-85866561 Msa0480530:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG + chr3_3:85866579-85866598 None:intergenic 40.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr3_3:85865395-85865414 Msa0480530:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr3_3:85865513-85865532 Msa0480530:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr3_3:85865530-85865549 Msa0480530:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr3_3:85865939-85865958 None:intergenic 45.0%
!! CAAAGGTGTTTGGGAATCCA+TGG - chr3_3:85866004-85866023 Msa0480530:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG + chr3_3:85866114-85866133 None:intergenic 45.0%
GGACTTACTTGATTGACTGC+AGG + chr3_3:85866125-85866144 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr3_3:85866244-85866263 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr3_3:85866266-85866285 Msa0480530:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr3_3:85866303-85866322 None:intergenic 45.0%
CAGAGGACCTAATGAGGTTA+TGG - chr3_3:85866331-85866350 Msa0480530:intron 45.0%
TGTTCCCAAGAGCTACGATA+AGG - chr3_3:85866445-85866464 Msa0480530:CDS 45.0%
CTCTCCTTATCGTAGCTCTT+GGG + chr3_3:85866452-85866471 None:intergenic 45.0%
TCTCTCCTTATCGTAGCTCT+TGG + chr3_3:85866453-85866472 None:intergenic 45.0%
TCATAGAGGTCATTGAGTCC+GGG + chr3_3:85866578-85866597 None:intergenic 45.0%
GAAGATGCCTGTAGTTGGAA+TGG - chr3_3:85865395-85865414 Msa0480530:three_prime_UTR 45.0%
TATGGCTCAGAACAAGCTCT+TGG - chr3_3:85865513-85865532 Msa0480530:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr3_3:85865530-85865549 Msa0480530:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG + chr3_3:85865939-85865958 None:intergenic 45.0%
!! CAAAGGTGTTTGGGAATCCA+TGG - chr3_3:85866004-85866023 Msa0480530:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG + chr3_3:85866114-85866133 None:intergenic 45.0%
GGACTTACTTGATTGACTGC+AGG + chr3_3:85866125-85866144 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG + chr3_3:85866244-85866263 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG - chr3_3:85866266-85866285 Msa0480530:intron 45.0%
TTTCCTCAACGGGGAAAATG+CGG + chr3_3:85866303-85866322 None:intergenic 45.0%
CAGAGGACCTAATGAGGTTA+TGG - chr3_3:85866331-85866350 Msa0480530:intron 45.0%
TGTTCCCAAGAGCTACGATA+AGG - chr3_3:85866445-85866464 Msa0480530:CDS 45.0%
CTCTCCTTATCGTAGCTCTT+GGG + chr3_3:85866452-85866471 None:intergenic 45.0%
TCTCTCCTTATCGTAGCTCT+TGG + chr3_3:85866453-85866472 None:intergenic 45.0%
TCATAGAGGTCATTGAGTCC+GGG + chr3_3:85866578-85866597 None:intergenic 45.0%
GCTGATCCCATTCCAACTAC+AGG + chr3_3:85865405-85865424 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - chr3_3:85865518-85865537 Msa0480530:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr3_3:85866007-85866026 Msa0480530:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr3_3:85866228-85866247 Msa0480530:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr3_3:85866297-85866316 Msa0480530:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr3_3:85866302-85866321 Msa0480530:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr3_3:85866313-85866332 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr3_3:85866314-85866333 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG - chr3_3:85866314-85866333 Msa0480530:intron 50.0%
TGCAAGCAGAGGACCTAATG+AGG - chr3_3:85866325-85866344 Msa0480530:intron 50.0%
GCTGATCCCATTCCAACTAC+AGG + chr3_3:85865405-85865424 None:intergenic 50.0%
CTCAGAACAAGCTCTTGGAG+AGG - chr3_3:85865518-85865537 Msa0480530:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr3_3:85866007-85866026 Msa0480530:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr3_3:85866228-85866247 Msa0480530:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG - chr3_3:85866297-85866316 Msa0480530:intron 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG - chr3_3:85866302-85866321 Msa0480530:intron 50.0%
TGCTTGCACCTTTCCTCAAC+GGG + chr3_3:85866313-85866332 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr3_3:85866314-85866333 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG - chr3_3:85866314-85866333 Msa0480530:intron 50.0%
TGCAAGCAGAGGACCTAATG+AGG - chr3_3:85866325-85866344 Msa0480530:intron 50.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr3_3:85865933-85865952 Msa0480530:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr3_3:85866312-85866331 None:intergenic 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG + chr3_3:85866569-85866588 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG - chr3_3:85865933-85865952 Msa0480530:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG + chr3_3:85866312-85866331 None:intergenic 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG + chr3_3:85866569-85866588 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+CGG - chr3_3:85866557-85866576 Msa0480530:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG + chr3_3:85866573-85866592 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+CGG - chr3_3:85866557-85866576 Msa0480530:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG + chr3_3:85866573-85866592 None:intergenic 60.0%
! GTCCGGGCTTGGTTGGTCCA+GGG + chr3_3:85866562-85866581 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG + chr3_3:85866563-85866582 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG + chr3_3:85866562-85866581 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG + chr3_3:85866563-85866582 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85865285 85866768 85865285 ID=Msa0480530;Name=Msa0480530
chr3_3 mRNA 85865285 85866768 85865285 ID=Msa0480530-mRNA-1;Parent=Msa0480530;Name=Msa0480530-mRNA-1;_AED=0.15;_eAED=0.15;_QI=57|1|1|1|1|1|3|164|312
chr3_3 exon 85865285 85865823 85865285 ID=Msa0480530-mRNA-1:exon:24771;Parent=Msa0480530-mRNA-1
chr3_3 exon 85865917 85866160 85865917 ID=Msa0480530-mRNA-1:exon:24770;Parent=Msa0480530-mRNA-1
chr3_3 exon 85866392 85866768 85866392 ID=Msa0480530-mRNA-1:exon:24769;Parent=Msa0480530-mRNA-1
chr3_3 five_prime_UTR 85866712 85866768 85866712 ID=Msa0480530-mRNA-1:five_prime_utr;Parent=Msa0480530-mRNA-1
chr3_3 CDS 85866392 85866711 85866392 ID=Msa0480530-mRNA-1:cds;Parent=Msa0480530-mRNA-1
chr3_3 CDS 85865917 85866160 85865917 ID=Msa0480530-mRNA-1:cds;Parent=Msa0480530-mRNA-1
chr3_3 CDS 85865449 85865823 85865449 ID=Msa0480530-mRNA-1:cds;Parent=Msa0480530-mRNA-1
chr3_3 three_prime_UTR 85865285 85865448 85865285 ID=Msa0480530-mRNA-1:three_prime_utr;Parent=Msa0480530-mRNA-1
Gene Sequence

>Msa0480530

ATGGGTAGTGTTGAAATTCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTAGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACAGCTGCTGCATATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGACCTTTTTGTTACTTCTAAACTTTGGGTTACTGAAAACCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTCAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGAGGACCTAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCTCATGGAAAGTCTGTTGCACAAATATCTCTAAGATGGTTATACGAACAAGGAGTCACTTTTGTTCCCAAGAGCTACGATAAGGAGAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAGGAGGATCATGAGAAGATTGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCCGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0480530

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*