AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744560 MtrunA17_Chr5g0447941 97.436 312 8 0 1 312 1 312 0.0 632
Msa0744560 MtrunA17_Chr5g0447951 97.115 312 9 0 1 312 1 312 0.0 630
Msa0744560 MtrunA17_Chr5g0447961 97.115 312 9 0 1 312 1 312 0.0 630
Msa0744560 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 3.18e-162 454
Msa0744560 MtrunA17_Chr1g0173621 62.623 305 111 3 1 302 1 305 2.03e-136 389
Msa0744560 MtrunA17_Chr6g0479981 49.505 303 146 5 1 300 1 299 5.75e-95 283
Msa0744560 MtrunA17_Chr6g0480011 49.186 307 143 8 1 300 1 301 9.92e-94 281
Msa0744560 MtrunA17_Chr6g0480021 48.039 306 125 7 19 311 16 300 1.68e-91 274
Msa0744560 MtrunA17_Chr8g0368921 42.254 284 161 2 19 300 15 297 4.15e-74 230
Msa0744560 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 2.93e-71 223
Msa0744560 MtrunA17_Chr4g0018921 40.702 285 164 4 18 300 12 293 6.42e-71 222
Msa0744560 MtrunA17_Chr8g0368931 42.708 288 154 4 19 302 15 295 1.77e-69 218
Msa0744560 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 4.24e-66 209
Msa0744560 MtrunA17_Chr4g0009581 42.295 305 148 6 19 312 16 303 4.08e-65 207
Msa0744560 MtrunA17_Chr4g0036261 58.125 160 66 1 139 297 1 160 8.12e-59 187
Msa0744560 MtrunA17_Chr7g0243551 38.321 274 161 5 20 292 23 289 7.22e-58 188
Msa0744560 MtrunA17_Chr4g0036051 38.816 304 171 6 18 310 9 308 4.00e-57 186
Msa0744560 MtrunA17_Chr4g0036301 52.353 170 71 3 151 311 1 169 2.72e-50 164
Msa0744560 MtrunA17_Chr4g0036321 51.765 170 72 3 151 311 1 169 6.82e-49 160
Msa0744560 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 9.95e-45 152
Msa0744560 MtrunA17_Chr6g0479811 45.133 113 57 2 191 300 1 111 5.90e-25 97.1
Msa0744560 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 6.66e-24 94.0
Msa0744560 MtrunA17_Chr4g0036311 48.352 91 45 2 19 107 16 106 5.66e-23 91.7
Msa0744560 MtrunA17_Chr4g0036251 51.111 90 38 2 19 107 16 100 1.11e-22 90.5
Msa0744560 MtrunA17_Chr3g0095421 26.510 298 147 11 34 285 73 344 4.29e-17 80.9
Msa0744560 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 2.27e-16 73.6
Msa0744560 MtrunA17_Chr3g0127491 22.789 294 178 9 36 294 71 350 4.13e-14 72.0
Msa0744560 MtrunA17_Chr7g0274071 25.347 288 151 11 41 289 52 314 5.50e-13 68.6
Msa0744560 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 5.77e-12 65.5
Msa0744560 MtrunA17_Chr1g0204651 23.301 309 166 10 24 289 29 309 7.53e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744560 AT1G59960.1 54.221 308 130 6 1 300 1 305 1.88e-113 331
Msa0744560 AT1G59950.1 55.903 288 117 5 20 300 15 299 1.60e-104 308
Msa0744560 AT2G37790.1 43.706 286 150 4 19 300 15 293 7.43e-77 238
Msa0744560 AT2G37770.2 44.056 286 149 4 19 300 15 293 3.45e-76 236
Msa0744560 AT5G62420.1 43.310 284 155 4 20 300 14 294 3.92e-73 228
Msa0744560 AT2G37760.4 44.014 284 146 4 19 299 15 288 6.74e-73 227
Msa0744560 AT2G37760.3 44.014 284 146 4 19 299 15 288 6.74e-73 227
Msa0744560 AT5G01670.1 42.254 284 155 6 19 300 23 299 2.89e-72 226
Msa0744560 AT2G37760.5 44.484 281 143 4 19 296 15 285 6.00e-72 224
Msa0744560 AT2G37760.2 43.972 282 145 4 19 297 15 286 3.57e-71 223
Msa0744560 AT2G37760.1 43.972 282 145 4 19 297 15 286 3.57e-71 223
Msa0744560 AT3G53880.1 41.696 283 160 3 19 300 15 293 2.82e-69 218
Msa0744560 AT3G53880.2 41.516 277 157 3 19 294 15 287 6.46e-67 212
Msa0744560 AT5G01670.2 38.585 311 155 7 19 300 23 326 2.59e-66 212
Msa0744560 AT2G21260.1 38.754 289 162 6 18 295 9 293 4.32e-65 207
Msa0744560 AT2G21250.1 37.500 304 175 6 18 310 9 308 9.45e-64 204
Msa0744560 AT2G37760.6 43.933 239 127 3 62 297 6 240 1.12e-58 189
Msa0744560 AT2G37760.7 43.933 239 127 3 62 297 6 240 1.12e-58 189
Msa0744560 AT2G37770.1 47.208 197 94 3 19 212 15 204 1.31e-53 177
Msa0744560 AT2G21250.2 41.546 207 110 5 18 217 9 211 8.26e-47 158
Msa0744560 AT2G21260.2 34.545 220 131 5 87 295 8 225 9.11e-40 140
Msa0744560 AT1G06690.1 27.458 295 146 10 35 285 85 355 2.35e-20 90.9
Msa0744560 AT5G53580.1 24.912 285 159 10 44 290 80 347 4.24e-15 75.5
Msa0744560 AT1G60680.1 26.101 318 171 14 25 300 27 322 1.05e-13 71.2
Msa0744560 AT1G60750.1 25.532 282 160 12 44 300 50 306 2.15e-11 64.3

Find 68 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 5_1:-65395815 None:intergenic
TTGCATTGCAAAACTCTCTA+AGG 0.274401 5_1:-65395599 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.287256 5_1:-65395288 None:intergenic
ATTATCAATGTTATTGTATT+GGG 0.287934 5_1:+65396035 Msa0744560:three_prime_UTR
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_1:+65395250 Msa0744560:CDS
AATTATCAATGTTATTGTAT+TGG 0.323636 5_1:+65396034 Msa0744560:three_prime_UTR
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_1:-65394802 None:intergenic
CTTTGTCACTTCCAAACTTT+GGG 0.341927 5_1:+65394917 Msa0744560:CDS
AGGCCTGGCTTGGTTGGTCC+AGG 0.344379 5_1:-65395897 None:intergenic
AAAATTTGTGTATCTTTGAT+TGG 0.361005 5_1:+65395817 Msa0744560:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_1:-65394756 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_1:+65395331 Msa0744560:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_1:+65395378 Msa0744560:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_1:-65395330 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_1:-65395306 None:intergenic
TCTTTGTCACTTCCAAACTT+TGG 0.379540 5_1:+65394916 Msa0744560:CDS
TCATTCTCCATAACCTCATT+TGG 0.392662 5_1:-65395675 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_1:+65395736 Msa0744560:CDS
TCTTTCCTTATCATAACTCT+TGG 0.404407 5_1:-65395787 None:intergenic
CAGAGGACCAAATGAGGTTA+TGG 0.408273 5_1:+65395668 Msa0744560:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_1:+65395332 Msa0744560:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_1:+65394873 Msa0744560:CDS
TGTTCCCAAGAGTTATGATA+AGG 0.428240 5_1:+65395782 Msa0744560:CDS
TCATTGAGGCCTGGCTTGGT+TGG 0.438358 5_1:-65395903 None:intergenic
CTTTCCTTATCATAACTCTT+GGG 0.442857 5_1:-65395786 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_1:+65395879 Msa0744560:CDS
GACTCTTCAACTAGACTACT+TGG 0.469433 5_1:+65395230 Msa0744560:CDS
GAGGTCATTGAGGCCTGGCT+TGG 0.476217 5_1:-65395907 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.483158 5_1:-65394689 None:intergenic
ATCCCTGGACCAACCAAGCC+AGG 0.483424 5_1:+65395894 Msa0744560:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_1:-65395358 None:intergenic
GGCCTGGCTTGGTTGGTCCA+GGG 0.485174 5_1:-65395896 None:intergenic
TGAATTACTTGATTGACTGC+TGG 0.489360 5_1:-65395459 None:intergenic
TTTGATACTGCTGCTGCGTA+TGG 0.491072 5_1:+65394825 Msa0744560:CDS
TATGGCTCAGAACAAGCTCT+TGG 0.492260 5_1:+65394843 Msa0744560:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_1:+65395360 Msa0744560:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_1:+65394860 Msa0744560:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_1:-65394755 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.513012 5_1:-65394690 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_1:+65395324 Msa0744560:CDS
GAAGATGCCTGTGGTTGGAA+TGG 0.533175 5_1:+65394725 Msa0744560:CDS
TCATAGAGGTCATTGAGGCC+TGG 0.545875 5_1:-65395912 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.552845 5_1:+65394726 Msa0744560:CDS
AAGGTTCTTACCAACACTCC+TGG 0.555463 5_1:+65394696 Msa0744560:CDS
CTGACATTTAGTCATCATAG+AGG 0.564328 5_1:-65395926 None:intergenic
CTTCAGTTGACCAGGAGTGT+TGG 0.569334 5_1:-65394706 None:intergenic
GCTGATCCCATTCCAACCAC+AGG 0.587516 5_1:-65394732 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_1:+65394792 Msa0744560:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_1:+65395341 Msa0744560:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_1:+65395750 Msa0744560:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.589452 5_1:-65395648 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.591438 5_1:+65395565 Msa0744560:intron
TGCAAGCAGAGGACCAAATG+AGG 0.592065 5_1:+65395662 Msa0744560:CDS
ACAGGCATCTTCAGTTGACC+AGG 0.593409 5_1:-65394714 None:intergenic
CAACTGAAGATGCCTGTGGT+TGG 0.604555 5_1:+65394720 Msa0744560:CDS
AGTCATCATAGAGGTCATTG+AGG 0.605914 5_1:-65395917 None:intergenic
TGGTCAACTGAAGATGCCTG+TGG 0.614136 5_1:+65394716 Msa0744560:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_1:-65394754 None:intergenic
TGGCCACTTAGTTCTCAACC+TGG 0.621982 5_1:+65395270 Msa0744560:CDS
TTTCCAGGTTGAGAACTAAG+TGG 0.629025 5_1:-65395273 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_1:+65395705 Msa0744560:CDS
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 5_1:+65394848 Msa0744560:CDS
AGAGCAGGAATAACAAGATG+AGG 0.638684 5_1:-65394954 None:intergenic
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 5_1:+65395651 Msa0744560:CDS
TTCAAATCTCGAAAGAAACA+AGG 0.648046 5_1:-65396013 None:intergenic
TAGTGTTGAAATCCCAACAA+AGG 0.659490 5_1:+65394677 Msa0744560:CDS
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_1:+65395344 Msa0744560:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 5_1:-65395448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATCAATGTTATTGTAT+TGG + chr5_1:65396034-65396053 Msa0744560:three_prime_UTR 15.0%
!! ATTATCAATGTTATTGTATT+GGG + chr5_1:65396035-65396054 Msa0744560:three_prime_UTR 15.0%
!! AATTATCAATGTTATTGTAT+TGG + chr5_1:65396034-65396053 Msa0744560:three_prime_UTR 15.0%
!! ATTATCAATGTTATTGTATT+GGG + chr5_1:65396035-65396054 Msa0744560:three_prime_UTR 15.0%
!!! TTATTTTTGTTGTTGTTGTT+GGG - chr5_1:65394645-65394664 None:intergenic 20.0%
!! AACAAAAATAACAACAACAT+GGG + chr5_1:65394654-65394673 Msa0744560:exon 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_1:65395818-65395837 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_1:65395817-65395836 Msa0744560:CDS 20.0%
!!! TTATTTTTGTTGTTGTTGTT+GGG - chr5_1:65394645-65394664 None:intergenic 20.0%
!! AACAAAAATAACAACAACAT+GGG + chr5_1:65394654-65394673 Msa0744560:exon 20.0%
!!! AATCAAAGATACACAAATTT+TGG - chr5_1:65395818-65395837 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG + chr5_1:65395817-65395836 Msa0744560:CDS 20.0%
!!! GTTATTTTTGTTGTTGTTGT+TGG - chr5_1:65394646-65394665 None:intergenic 25.0%
! CAACAAAAATAACAACAACA+TGG + chr5_1:65394653-65394672 Msa0744560:exon 25.0%
! TACACTTATTGAGATTAAAC+TGG + chr5_1:65395188-65395207 Msa0744560:intron 25.0%
! CAAGAAGTTAATCAAAACTT+AGG - chr5_1:65395494-65395513 None:intergenic 25.0%
! CAATGAACTCATATATTTAC+AGG + chr5_1:65395545-65395564 Msa0744560:intron 25.0%
!!! GTTATTTTTGTTGTTGTTGT+TGG - chr5_1:65394646-65394665 None:intergenic 25.0%
! CAACAAAAATAACAACAACA+TGG + chr5_1:65394653-65394672 Msa0744560:exon 25.0%
! TACACTTATTGAGATTAAAC+TGG + chr5_1:65395188-65395207 Msa0744560:intron 25.0%
! CAAGAAGTTAATCAAAACTT+AGG - chr5_1:65395494-65395513 None:intergenic 25.0%
! CAATGAACTCATATATTTAC+AGG + chr5_1:65395545-65395564 Msa0744560:intron 25.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_1:65394931-65394950 None:intergenic 30.0%
ATTGGAAATGAAAACTTTCC+AGG - chr5_1:65395291-65395310 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + chr5_1:65395296-65395315 Msa0744560:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_1:65395332-65395351 Msa0744560:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr5_1:65395548-65395567 Msa0744560:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_1:65395736-65395755 Msa0744560:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_1:65395789-65395808 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_1:65395790-65395809 None:intergenic 30.0%
TTCAAATCTCGAAAGAAACA+AGG - chr5_1:65396016-65396035 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG - chr5_1:65394931-65394950 None:intergenic 30.0%
ATTGGAAATGAAAACTTTCC+AGG - chr5_1:65395291-65395310 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + chr5_1:65395296-65395315 Msa0744560:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + chr5_1:65395332-65395351 Msa0744560:CDS 30.0%
TGAACTCATATATTTACAGG+TGG + chr5_1:65395548-65395567 Msa0744560:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + chr5_1:65395736-65395755 Msa0744560:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG - chr5_1:65395789-65395808 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG - chr5_1:65395790-65395809 None:intergenic 30.0%
TTCAAATCTCGAAAGAAACA+AGG - chr5_1:65396016-65396035 None:intergenic 30.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_1:65394677-65394696 Msa0744560:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_1:65394692-65394711 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_1:65394757-65394776 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_1:65394758-65394777 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_1:65394759-65394778 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_1:65394792-65394811 Msa0744560:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_1:65394805-65394824 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_1:65394873-65394892 Msa0744560:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr5_1:65394916-65394935 Msa0744560:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr5_1:65394917-65394936 Msa0744560:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr5_1:65394972-65394991 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_1:65395250-65395269 Msa0744560:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_1:65395324-65395343 Msa0744560:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_1:65395333-65395352 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_1:65395331-65395350 Msa0744560:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr5_1:65395462-65395481 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr5_1:65395602-65395621 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr5_1:65395603-65395622 Msa0744560:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr5_1:65395678-65395697 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_1:65395750-65395769 Msa0744560:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_1:65395782-65395801 Msa0744560:CDS 35.0%
CTGACATTTAGTCATCATAG+AGG - chr5_1:65395929-65395948 None:intergenic 35.0%
! TAGTGTTGAAATCCCAACAA+AGG + chr5_1:65394677-65394696 Msa0744560:CDS 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG - chr5_1:65394692-65394711 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - chr5_1:65394757-65394776 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - chr5_1:65394758-65394777 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - chr5_1:65394759-65394778 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + chr5_1:65394792-65394811 Msa0744560:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - chr5_1:65394805-65394824 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + chr5_1:65394873-65394892 Msa0744560:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG + chr5_1:65394916-65394935 Msa0744560:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG + chr5_1:65394917-65394936 Msa0744560:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG - chr5_1:65394972-65394991 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG + chr5_1:65395250-65395269 Msa0744560:CDS 35.0%
CTCTTACCATTTGATGTGAA+AGG + chr5_1:65395324-65395343 Msa0744560:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG - chr5_1:65395333-65395352 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + chr5_1:65395331-65395350 Msa0744560:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG - chr5_1:65395462-65395481 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG - chr5_1:65395602-65395621 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG + chr5_1:65395603-65395622 Msa0744560:CDS 35.0%
TCATTCTCCATAACCTCATT+TGG - chr5_1:65395678-65395697 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG + chr5_1:65395750-65395769 Msa0744560:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG + chr5_1:65395782-65395801 Msa0744560:CDS 35.0%
CTGACATTTAGTCATCATAG+AGG - chr5_1:65395929-65395948 None:intergenic 35.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_1:65394693-65394712 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_1:65394957-65394976 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_1:65395208-65395227 Msa0744560:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_1:65395230-65395249 Msa0744560:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr5_1:65395276-65395295 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_1:65395309-65395328 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_1:65395361-65395380 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_1:65395360-65395379 Msa0744560:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_1:65395378-65395397 Msa0744560:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_1:65395705-65395724 Msa0744560:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_1:65395879-65395898 Msa0744560:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr5_1:65395920-65395939 None:intergenic 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG - chr5_1:65394693-65394712 None:intergenic 40.0%
AGAGCAGGAATAACAAGATG+AGG - chr5_1:65394957-65394976 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG + chr5_1:65395208-65395227 Msa0744560:intron 40.0%
GACTCTTCAACTAGACTACT+TGG + chr5_1:65395230-65395249 Msa0744560:CDS 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG - chr5_1:65395276-65395295 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - chr5_1:65395309-65395328 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - chr5_1:65395361-65395380 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + chr5_1:65395360-65395379 Msa0744560:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + chr5_1:65395378-65395397 Msa0744560:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + chr5_1:65395705-65395724 Msa0744560:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + chr5_1:65395879-65395898 Msa0744560:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG - chr5_1:65395920-65395939 None:intergenic 40.0%
AAGGTTCTTACCAACACTCC+TGG + chr5_1:65394696-65394715 Msa0744560:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_1:65394726-65394745 Msa0744560:CDS 45.0%
TTTGATACTGCTGCTGCGTA+TGG + chr5_1:65394825-65394844 Msa0744560:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + chr5_1:65394843-65394862 Msa0744560:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_1:65394860-65394879 Msa0744560:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_1:65395341-65395360 Msa0744560:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr5_1:65395451-65395470 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr5_1:65395581-65395600 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr5_1:65395668-65395687 Msa0744560:CDS 45.0%
AAGGTTCTTACCAACACTCC+TGG + chr5_1:65394696-65394715 Msa0744560:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + chr5_1:65394726-65394745 Msa0744560:CDS 45.0%
TTTGATACTGCTGCTGCGTA+TGG + chr5_1:65394825-65394844 Msa0744560:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + chr5_1:65394843-65394862 Msa0744560:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + chr5_1:65394860-65394879 Msa0744560:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + chr5_1:65395341-65395360 Msa0744560:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG - chr5_1:65395451-65395470 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG - chr5_1:65395581-65395600 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG + chr5_1:65395668-65395687 Msa0744560:CDS 45.0%
! CTTCAGTTGACCAGGAGTGT+TGG - chr5_1:65394709-65394728 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG - chr5_1:65394717-65394736 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG + chr5_1:65394716-65394735 Msa0744560:CDS 50.0%
CAACTGAAGATGCCTGTGGT+TGG + chr5_1:65394720-65394739 Msa0744560:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_1:65394725-65394744 Msa0744560:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + chr5_1:65394848-65394867 Msa0744560:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr5_1:65395270-65395289 Msa0744560:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_1:65395344-65395363 Msa0744560:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_1:65395565-65395584 Msa0744560:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr5_1:65395634-65395653 Msa0744560:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_1:65395651-65395670 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr5_1:65395651-65395670 Msa0744560:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr5_1:65395662-65395681 Msa0744560:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr5_1:65395915-65395934 None:intergenic 50.0%
! CTTCAGTTGACCAGGAGTGT+TGG - chr5_1:65394709-65394728 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG - chr5_1:65394717-65394736 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG + chr5_1:65394716-65394735 Msa0744560:CDS 50.0%
CAACTGAAGATGCCTGTGGT+TGG + chr5_1:65394720-65394739 Msa0744560:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + chr5_1:65394725-65394744 Msa0744560:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + chr5_1:65394848-65394867 Msa0744560:CDS 50.0%
! TGGCCACTTAGTTCTCAACC+TGG + chr5_1:65395270-65395289 Msa0744560:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + chr5_1:65395344-65395363 Msa0744560:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + chr5_1:65395565-65395584 Msa0744560:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG + chr5_1:65395634-65395653 Msa0744560:CDS 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - chr5_1:65395651-65395670 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG + chr5_1:65395651-65395670 Msa0744560:CDS 50.0%
TGCAAGCAGAGGACCAAATG+AGG + chr5_1:65395662-65395681 Msa0744560:CDS 50.0%
TCATAGAGGTCATTGAGGCC+TGG - chr5_1:65395915-65395934 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_1:65394735-65394754 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr5_1:65395639-65395658 Msa0744560:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr5_1:65395906-65395925 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - chr5_1:65394735-65394754 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG + chr5_1:65395639-65395658 Msa0744560:CDS 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG - chr5_1:65395906-65395925 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+AGG + chr5_1:65395894-65395913 Msa0744560:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr5_1:65395910-65395929 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+AGG + chr5_1:65395894-65395913 Msa0744560:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG - chr5_1:65395910-65395929 None:intergenic 60.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr5_1:65395899-65395918 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr5_1:65395900-65395919 None:intergenic 65.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG - chr5_1:65395899-65395918 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG - chr5_1:65395900-65395919 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 65394610 65396089 65394610 ID=Msa0744560;Name=Msa0744560
chr5_1 mRNA 65394610 65396089 65394610 ID=Msa0744560-mRNA-1;Parent=Msa0744560;Name=Msa0744560-mRNA-1;_AED=0.27;_eAED=0.27;_QI=62|1|1|1|1|1|3|148|312
chr5_1 exon 65394610 65394991 65394610 ID=Msa0744560-mRNA-1:exon:19440;Parent=Msa0744560-mRNA-1
chr5_1 exon 65395230 65395473 65395230 ID=Msa0744560-mRNA-1:exon:19441;Parent=Msa0744560-mRNA-1
chr5_1 exon 65395567 65396089 65395567 ID=Msa0744560-mRNA-1:exon:19442;Parent=Msa0744560-mRNA-1
chr5_1 five_prime_UTR 65394610 65394671 65394610 ID=Msa0744560-mRNA-1:five_prime_utr;Parent=Msa0744560-mRNA-1
chr5_1 CDS 65394672 65394991 65394672 ID=Msa0744560-mRNA-1:cds;Parent=Msa0744560-mRNA-1
chr5_1 CDS 65395230 65395473 65395230 ID=Msa0744560-mRNA-1:cds;Parent=Msa0744560-mRNA-1
chr5_1 CDS 65395567 65395941 65395567 ID=Msa0744560-mRNA-1:cds;Parent=Msa0744560-mRNA-1
chr5_1 three_prime_UTR 65395942 65396089 65395942 ID=Msa0744560-mRNA-1:three_prime_utr;Parent=Msa0744560-mRNA-1
Gene Sequence

>Msa0744560

ATGGGTAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACTCCTGGTCAACTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCGTATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGAACTCTTTGTCACTTCCAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTACAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAACCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAACCTTAGAGAGTTTTGCAATGCAAATGGAATAGTGTTAACTGCGTTTTCGCCGTTGAGGAAAGGTGCAAGCAGAGGACCAAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGTTATGATAAGGAAAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATCGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCAGGCCTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0744560

MGSVEIPTKVLTNTPGQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKNLREFCNANGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*