AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1150920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150920 MtrunA17_Chr7g0240681 96.889 225 7 0 1 225 1 225 5.97e-162 446
Msa1150920 MtrunA17_Chr7g0240631 79.464 224 45 1 1 224 1 223 4.18e-132 370
Msa1150920 MtrunA17_Chr7g0240641 78.571 224 47 1 1 224 1 223 1.32e-130 367
Msa1150920 MtrunA17_Chr7g0240691 75.342 219 54 0 6 224 36 254 1.14e-123 350
Msa1150920 MtrunA17_Chr7g0240581 69.333 225 68 1 1 225 1 224 8.31e-115 327
Msa1150920 MtrunA17_Chr7g0240561 68.444 225 70 1 1 225 1 224 6.30e-114 325
Msa1150920 MtrunA17_Chr7g0240551 70.222 225 66 1 1 225 1 224 2.40e-113 323
Msa1150920 MtrunA17_Chr7g0240531 67.111 225 73 1 1 225 1 224 1.27e-106 306
Msa1150920 MtrunA17_Chr4g0008791 65.179 224 77 1 1 224 1 223 3.77e-106 305
Msa1150920 MtrunA17_Chr7g0240541 66.222 225 75 1 1 225 1 224 3.21e-105 303
Msa1150920 MtrunA17_Chr7g0240611 67.857 224 67 2 1 224 1 219 9.25e-105 301
Msa1150920 MtrunA17_Chr7g0240511 65.333 225 72 2 1 225 1 219 6.47e-101 291
Msa1150920 MtrunA17_Chr7g0240521 63.274 226 81 2 1 225 8 232 2.09e-99 288
Msa1150920 MtrunA17_Chr7g0240671 66.346 208 65 2 8 215 5 207 1.81e-97 283
Msa1150920 MtrunA17_Chr4g0008781 63.303 218 76 3 1 216 1 216 1.89e-97 283
Msa1150920 MtrunA17_Chr7g0240651 65.919 223 71 2 1 223 1 218 8.60e-92 268
Msa1150920 MtrunA17_Chr7g0240661 66.512 215 67 2 1 215 1 210 7.64e-90 264
Msa1150920 MtrunA17_Chr8g0379581 45.205 219 117 2 4 221 2 218 3.99e-68 208
Msa1150920 MtrunA17_Chr6g0483141 47.368 209 107 2 7 214 3 209 1.22e-66 205
Msa1150920 MtrunA17_Chr3g0132581 46.154 221 116 2 5 224 3 221 3.12e-66 204
Msa1150920 MtrunA17_Chr8g0379561 47.196 214 109 3 1 213 1 211 2.07e-65 202
Msa1150920 MtrunA17_Chr1g0196771 44.000 225 112 4 6 223 2 219 1.63e-63 197
Msa1150920 MtrunA17_Chr1g0212301 45.972 211 112 1 7 215 3 213 3.27e-62 193
Msa1150920 MtrunA17_Chr1g0196691 44.595 222 117 3 7 224 28 247 8.92e-60 188
Msa1150920 MtrunA17_Chr4g0029341 45.794 214 111 2 6 216 3 214 6.60e-58 182
Msa1150920 MtrunA17_Chr1g0196661 45.045 222 117 3 7 225 3 222 5.07e-57 180
Msa1150920 MtrunA17_Chr1g0196711 45.714 210 109 2 7 213 3 210 3.99e-55 176
Msa1150920 MtrunA17_Chr5g0415411 44.796 221 111 4 1 213 1 218 4.92e-55 175
Msa1150920 MtrunA17_Chr1g0196721 44.545 220 117 3 8 224 3 220 6.15e-55 175
Msa1150920 MtrunA17_Chr5g0417011 40.359 223 124 3 1 216 1 221 7.00e-54 172
Msa1150920 MtrunA17_Chr8g0363751 44.091 220 114 4 5 216 3 221 9.74e-53 169
Msa1150920 MtrunA17_Chr2g0312771 42.654 211 113 5 6 213 3 208 1.09e-50 164
Msa1150920 MtrunA17_Chr2g0312751 42.453 212 114 6 6 214 3 209 5.89e-50 162
Msa1150920 MtrunA17_Chr2g0312791 43.415 205 111 4 6 208 3 204 1.55e-49 161
Msa1150920 MtrunA17_Chr2g0312731 42.584 209 106 5 6 208 3 203 5.51e-48 157
Msa1150920 MtrunA17_Chr3g0107731 42.788 208 113 5 8 213 10 213 9.20e-48 157
Msa1150920 MtrunA17_Chr2g0312781 40.476 210 119 4 1 208 15 220 1.93e-47 156
Msa1150920 MtrunA17_Chr2g0312721 42.512 207 113 5 6 210 3 205 4.17e-47 155
Msa1150920 MtrunA17_Chr8g0357211 41.429 210 117 4 6 213 3 208 8.61e-46 151
Msa1150920 MtrunA17_Chr4g0069471 46.032 189 93 5 3 188 21 203 1.05e-45 150
Msa1150920 MtrunA17_Chr8g0357241 41.096 219 122 5 6 222 3 216 1.29e-45 151
Msa1150920 MtrunA17_Chr3g0107741 40.566 212 120 5 4 213 6 213 1.51e-45 151
Msa1150920 MtrunA17_Chr2g0312811 40.566 212 118 6 6 213 3 210 6.81e-45 149
Msa1150920 MtrunA17_Chr2g0312691 37.788 217 129 4 7 221 4 216 5.08e-42 142
Msa1150920 MtrunA17_Chr5g0433801 38.028 213 126 5 3 213 2 210 1.45e-41 140
Msa1150920 MtrunA17_Chr8g0391631 47.239 163 75 5 1 154 15 175 4.43e-41 138
Msa1150920 MtrunA17_Chr2g0312681 36.792 212 122 5 7 213 4 208 6.00e-41 139
Msa1150920 MtrunA17_Chr2g0312711 38.756 209 121 4 7 213 4 207 1.22e-38 133
Msa1150920 MtrunA17_Chr2g0313561 49.153 59 29 1 51 108 2 60 1.07e-14 67.0
Msa1150920 MtrunA17_Chr5g0415421 46.575 73 36 1 31 100 11 83 9.10e-14 65.9
Msa1150920 MtrunA17_Chr4g0076681 27.670 206 120 6 21 209 29 222 1.55e-13 67.4
Msa1150920 MtrunA17_Chr4g0076691 26.699 206 122 7 21 209 29 222 4.86e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150920 AT2G29420.1 50.455 220 106 2 3 221 5 222 1.25e-76 231
Msa1150920 AT3G09270.1 51.111 225 104 5 4 224 2 224 3.17e-76 229
Msa1150920 AT2G29490.1 48.571 210 104 3 1 208 1 208 6.86e-62 193
Msa1150920 AT2G29480.1 45.714 210 110 3 1 208 1 208 1.46e-56 179
Msa1150920 AT2G29450.1 47.115 208 107 3 3 208 2 208 3.74e-56 178
Msa1150920 AT2G29460.1 43.498 223 122 3 1 221 1 221 4.49e-56 178
Msa1150920 AT1G10370.1 45.673 208 105 3 5 205 3 209 8.47e-56 177
Msa1150920 AT2G29440.1 46.190 210 108 4 1 208 1 207 8.82e-55 175
Msa1150920 AT1G27130.1 42.478 226 120 5 1 218 1 224 3.54e-54 173
Msa1150920 AT2G29470.1 43.128 211 115 4 1 208 1 209 5.04e-54 173
Msa1150920 AT1G10360.1 42.925 212 111 4 1 205 1 209 1.90e-52 169
Msa1150920 AT1G59700.1 46.411 209 103 5 5 205 4 211 3.63e-52 169
Msa1150920 AT1G78340.1 44.286 210 111 4 6 213 3 208 4.84e-52 167
Msa1150920 AT1G69930.1 40.444 225 127 3 2 220 7 230 2.64e-51 166
Msa1150920 AT1G59670.1 44.019 209 108 4 5 205 4 211 2.65e-51 166
Msa1150920 AT1G78370.1 41.748 206 114 4 10 213 7 208 2.59e-50 163
Msa1150920 AT1G78380.1 44.776 201 105 4 7 205 4 200 5.16e-50 162
Msa1150920 AT1G78320.1 42.326 215 118 5 5 217 2 212 6.89e-50 162
Msa1150920 AT1G17170.1 41.284 218 121 4 6 221 3 215 1.44e-48 159
Msa1150920 AT1G53680.1 39.437 213 125 3 1 211 1 211 3.11e-48 158
Msa1150920 AT1G69920.1 40.465 215 117 5 1 205 26 239 1.42e-47 157
Msa1150920 AT1G27140.1 39.827 231 128 5 1 222 1 229 1.79e-47 157
Msa1150920 AT5G62480.1 39.640 222 122 4 5 216 6 225 3.08e-46 154
Msa1150920 AT1G17180.1 41.429 210 117 5 6 213 3 208 4.66e-46 152
Msa1150920 AT1G78360.1 41.429 210 116 5 7 213 4 209 2.14e-43 145
Msa1150920 AT3G43800.1 39.423 208 116 6 4 205 2 205 8.68e-41 139
Msa1150920 AT1G74590.1 34.211 228 142 4 1 222 1 226 2.67e-40 138
Msa1150920 AT1G17190.1 38.605 215 124 5 1 213 1 209 3.24e-39 135
Msa1150920 AT1G78320.2 35.047 214 108 5 5 217 2 185 4.61e-33 118
Msa1150920 AT5G62480.2 31.222 221 116 4 5 216 6 199 1.05e-28 107
Msa1150920 AT5G62480.3 30.769 221 116 4 5 216 6 198 5.40e-28 105
Msa1150920 AT2G02390.3 26.522 230 134 7 3 209 4 221 6.12e-12 63.5

Find 63 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTCCACTTGGAAAGTT+TGG 0.246363 7_4:+34758275 None:intergenic
AAAGAGCCTTGGCTAGATTT+TGG 0.274128 7_4:-34758832 Msa1150920:CDS
GAGCTGAAGGACAAGTTCTT+TGG 0.294063 7_4:-34758405 Msa1150920:CDS
GTCATCGGATCTTTGCTGTT+AGG 0.317849 7_4:-34758110 Msa1150920:three_prime_UTR
AAAATCTAGCCAAGGCTCTT+TGG 0.322049 7_4:+34758834 None:intergenic
CTGGATGGTTGAGAAATTCT+TGG 0.336617 7_4:+34758256 None:intergenic
TGGCTCCACTTGGAAAGTTT+GGG 0.342035 7_4:+34758276 None:intergenic
ATTTCTCCGCGTGACATCTA+AGG 0.345549 7_4:-34758054 Msa1150920:three_prime_UTR
TCTCAACCATCCAGTTGTTA+AGG 0.373954 7_4:-34758247 Msa1150920:CDS
CCTTTGATTCAAGACATTAC+AGG 0.375169 7_4:-34758327 Msa1150920:CDS
ATCTGTACTCTGCACACAAA+TGG 0.384011 7_4:+34759061 None:intergenic
TTCTTTGGAGGAGAGGAGAT+TGG 0.390435 7_4:-34758390 Msa1150920:CDS
TCATCGGATCTTTGCTGTTA+GGG 0.392430 7_4:-34758109 Msa1150920:three_prime_UTR
GTGAAGCTATTGGGAGCTAT+AGG 0.394371 7_4:-34759088 Msa1150920:CDS
CAAGAAGAAGTGAAGCTATT+GGG 0.403464 7_4:-34759097 Msa1150920:CDS
GGCATATTCTCCTTAACAAC+TGG 0.406984 7_4:+34758237 None:intergenic
TCAAGAAGAAGTGAAGCTAT+TGG 0.415262 7_4:-34759098 Msa1150920:CDS
AAGGCAAGTACTTGCACATC+TGG 0.419835 7_4:-34759250 None:intergenic
TATGGATCAGAAGGCAAGAT+AGG 0.453847 7_4:+34758857 None:intergenic
AGGAGAGGAGATTGGAATTG+TGG 0.454908 7_4:-34758382 Msa1150920:CDS
ACAGATTGCTCTCAAGTTGA+AGG 0.458989 7_4:-34759044 Msa1150920:CDS
GAGAAATTCTTGGCTCCACT+TGG 0.459712 7_4:+34758266 None:intergenic
ATCACAAGGGACTCTGATAT+AGG 0.465216 7_4:+34758914 None:intergenic
CTAGCCAAGGCTCTTTGGTA+TGG 0.477671 7_4:+34758839 None:intergenic
TCTGTACTCTGCACACAAAT+GGG 0.477923 7_4:+34759062 None:intergenic
AGAAAATTTGTTTATGAGTG+AGG 0.478436 7_4:+34759169 None:intergenic
CTTAGTGTTGAGTGTGTTGT+GGG 0.483220 7_4:-34757996 Msa1150920:three_prime_UTR
CCTGTAATGTCTTGAATCAA+AGG 0.490769 7_4:+34758327 None:intergenic
CTGAAGGACAAGTTCTTTGG+AGG 0.491967 7_4:-34758402 Msa1150920:CDS
CGATATTTGGAAACAAAGTT+CGG 0.494576 7_4:+34757915 None:intergenic
TTGAGTATATTGATGAGACT+TGG 0.497242 7_4:-34758889 Msa1150920:CDS
CTTTGATTCAAGACATTACA+GGG 0.498166 7_4:-34758326 Msa1150920:CDS
GAGCGCGAGAAGAATATTGA+AGG 0.504203 7_4:-34758459 Msa1150920:CDS
ACTTAGTGTTGAGTGTGTTG+TGG 0.515384 7_4:-34757997 Msa1150920:three_prime_UTR
AGAAAATTGAAGTGCTGCAA+TGG 0.516896 7_4:-34759128 Msa1150920:exon
CTGTAATGTCTTGAATCAAA+GGG 0.522980 7_4:+34758328 None:intergenic
TATAAACTGGGTTATACTTG+AGG 0.528468 7_4:+34758969 None:intergenic
TTATTAATATTATCTGTCAT+CGG 0.528541 7_4:-34758125 Msa1150920:three_prime_UTR
GGACAAGTTCTTTGGAGGAG+AGG 0.532885 7_4:-34758397 Msa1150920:CDS
TCTAAGGTTATAGTTATCAA+AGG 0.540589 7_4:-34758038 Msa1150920:three_prime_UTR
CACATCTGGTCAACAACATG+TGG 0.544136 7_4:-34759236 Msa1150920:five_prime_UTR
CGCTCTGTAGTCAGAGATGT+AGG 0.553215 7_4:-34757947 Msa1150920:three_prime_UTR
TAGTGTTGAGTGTGTTGTGG+GGG 0.563626 7_4:-34757994 Msa1150920:three_prime_UTR
CAATATACTCAATAATCACA+AGG 0.568482 7_4:+34758900 None:intergenic
CTCATAGTGAGCTTTGAAGT+AGG 0.574735 7_4:+34758194 None:intergenic
GCTCTTTGGTATGGATCAGA+AGG 0.575621 7_4:+34758848 None:intergenic
TGATCCATACCAAAGAGCCT+TGG 0.580948 7_4:-34758843 Msa1150920:CDS
GAATATTGAAGGAACAATTG+AGG 0.584716 7_4:-34758448 Msa1150920:CDS
TATTCTCCTTAACAACTGGA+TGG 0.588298 7_4:+34758241 None:intergenic
GATTCTTGAGAATGAGCTGA+AGG 0.588727 7_4:-34758418 Msa1150920:CDS
CAGATTGCTCTCAAGTTGAA+GGG 0.590452 7_4:-34759043 Msa1150920:CDS
GTCTAACTTCATCGACGACA+AGG 0.594451 7_4:-34758810 Msa1150920:intron
TGAATTTCTTGAAGAAAACA+TGG 0.601615 7_4:-34759011 Msa1150920:CDS
CAGAGCGGCTGCATACCGCA+TGG 0.602934 7_4:+34757963 None:intergenic
TTAGTGTTGAGTGTGTTGTG+GGG 0.618784 7_4:-34757995 Msa1150920:three_prime_UTR
GTTAGACCAAAATCTAGCCA+AGG 0.639426 7_4:+34758826 None:intergenic
GCGCTCTTTCTCATCATCAA+CGG 0.643070 7_4:+34758476 None:intergenic
AGTGTCCCAAACTTTCCAAG+TGG 0.647650 7_4:-34758281 Msa1150920:CDS
CTATAACCTTAGATGTCACG+CGG 0.672953 7_4:+34758048 None:intergenic
AATATACTCAATAATCACAA+GGG 0.685010 7_4:+34758901 None:intergenic
TGTTTATGAGTGAGGCACTG+TGG 0.726972 7_4:+34759177 None:intergenic
ACATCTGGTCAACAACATGT+GGG 0.746735 7_4:-34759235 Msa1150920:five_prime_UTR
CTACATCTCTGACTACAGAG+CGG 0.781124 7_4:+34757948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATATTATCTGTCAT+CGG - chr7_4:34759039-34759058 Msa1150920:CDS 15.0%
!! TTATTAATATTATCTGTCAT+CGG - chr7_4:34759039-34759058 Msa1150920:CDS 15.0%
!! AATATACTCAATAATCACAA+GGG + chr7_4:34758266-34758285 None:intergenic 20.0%
!! AATATACTCAATAATCACAA+GGG + chr7_4:34758266-34758285 None:intergenic 20.0%
!! AGAAAATTTGTTTATGAGTG+AGG + chr7_4:34757998-34758017 None:intergenic 25.0%
! TGAATTTCTTGAAGAAAACA+TGG - chr7_4:34758153-34758172 Msa1150920:three_prime_UTR 25.0%
!! CTGGAATCTTTTTATAAACT+GGG + chr7_4:34758210-34758229 None:intergenic 25.0%
!! ACTGGAATCTTTTTATAAAC+TGG + chr7_4:34758211-34758230 None:intergenic 25.0%
!! TTTTCATTGTGAACAAAAAC+TGG + chr7_4:34758229-34758248 None:intergenic 25.0%
! CAATATACTCAATAATCACA+AGG + chr7_4:34758267-34758286 None:intergenic 25.0%
! AATACATCATATGTGATTGT+TGG + chr7_4:34758487-34758506 None:intergenic 25.0%
! AATTTACATCTTTGATGTCA+CGG - chr7_4:34758573-34758592 Msa1150920:intron 25.0%
!! ATTTACATTAGAAAAGTACG+CGG + chr7_4:34758611-34758630 None:intergenic 25.0%
!! TCTAAGGTTATAGTTATCAA+AGG - chr7_4:34759126-34759145 Msa1150920:exon 25.0%
!!! ATCAAAGGTTTTTGAGATTA+CGG - chr7_4:34759141-34759160 Msa1150920:five_prime_UTR 25.0%
!! AGAAAATTTGTTTATGAGTG+AGG + chr7_4:34757998-34758017 None:intergenic 25.0%
! TGAATTTCTTGAAGAAAACA+TGG - chr7_4:34758153-34758172 Msa1150920:three_prime_UTR 25.0%
!! CTGGAATCTTTTTATAAACT+GGG + chr7_4:34758210-34758229 None:intergenic 25.0%
!! ACTGGAATCTTTTTATAAAC+TGG + chr7_4:34758211-34758230 None:intergenic 25.0%
!! TTTTCATTGTGAACAAAAAC+TGG + chr7_4:34758229-34758248 None:intergenic 25.0%
! CAATATACTCAATAATCACA+AGG + chr7_4:34758267-34758286 None:intergenic 25.0%
! AATACATCATATGTGATTGT+TGG + chr7_4:34758487-34758506 None:intergenic 25.0%
! AATTTACATCTTTGATGTCA+CGG - chr7_4:34758573-34758592 Msa1150920:intron 25.0%
!! ATTTACATTAGAAAAGTACG+CGG + chr7_4:34758611-34758630 None:intergenic 25.0%
!! TCTAAGGTTATAGTTATCAA+AGG - chr7_4:34759126-34759145 Msa1150920:exon 25.0%
!!! ATCAAAGGTTTTTGAGATTA+CGG - chr7_4:34759141-34759160 Msa1150920:five_prime_UTR 25.0%
TATAAACTGGGTTATACTTG+AGG + chr7_4:34758198-34758217 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG - chr7_4:34758275-34758294 Msa1150920:CDS 30.0%
ATTACATCATACGTGATTGA+TGG - chr7_4:34758434-34758453 Msa1150920:CDS 30.0%
GAATATTGAAGGAACAATTG+AGG - chr7_4:34758716-34758735 Msa1150920:intron 30.0%
CTGTAATGTCTTGAATCAAA+GGG + chr7_4:34758839-34758858 None:intergenic 30.0%
CTTTGATTCAAGACATTACA+GGG - chr7_4:34758838-34758857 Msa1150920:CDS 30.0%
TATAAACTGGGTTATACTTG+AGG + chr7_4:34758198-34758217 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG - chr7_4:34758275-34758294 Msa1150920:CDS 30.0%
ATTACATCATACGTGATTGA+TGG - chr7_4:34758434-34758453 Msa1150920:CDS 30.0%
GAATATTGAAGGAACAATTG+AGG - chr7_4:34758716-34758735 Msa1150920:intron 30.0%
CTGTAATGTCTTGAATCAAA+GGG + chr7_4:34758839-34758858 None:intergenic 30.0%
CTTTGATTCAAGACATTACA+GGG - chr7_4:34758838-34758857 Msa1150920:CDS 30.0%
! CTGTGGCTTTTTATAGAGTT+TGG + chr7_4:34757973-34757992 None:intergenic 35.0%
!! AGAAAATTGAAGTGCTGCAA+TGG - chr7_4:34758036-34758055 Msa1150920:three_prime_UTR 35.0%
TCAAGAAGAAGTGAAGCTAT+TGG - chr7_4:34758066-34758085 Msa1150920:three_prime_UTR 35.0%
CAAGAAGAAGTGAAGCTATT+GGG - chr7_4:34758067-34758086 Msa1150920:three_prime_UTR 35.0%
CCTGTAATGTCTTGAATCAA+AGG + chr7_4:34758840-34758859 None:intergenic 35.0%
CCTTTGATTCAAGACATTAC+AGG - chr7_4:34758837-34758856 Msa1150920:CDS 35.0%
TATTCTCCTTAACAACTGGA+TGG + chr7_4:34758926-34758945 None:intergenic 35.0%
!!! GAGTCTATTTTGAAGCAAAG+AGG + chr7_4:34758998-34759017 None:intergenic 35.0%
! CTGTGGCTTTTTATAGAGTT+TGG + chr7_4:34757973-34757992 None:intergenic 35.0%
!! AGAAAATTGAAGTGCTGCAA+TGG - chr7_4:34758036-34758055 Msa1150920:three_prime_UTR 35.0%
TCAAGAAGAAGTGAAGCTAT+TGG - chr7_4:34758066-34758085 Msa1150920:three_prime_UTR 35.0%
CAAGAAGAAGTGAAGCTATT+GGG - chr7_4:34758067-34758086 Msa1150920:three_prime_UTR 35.0%
CCTGTAATGTCTTGAATCAA+AGG + chr7_4:34758840-34758859 None:intergenic 35.0%
CCTTTGATTCAAGACATTAC+AGG - chr7_4:34758837-34758856 Msa1150920:CDS 35.0%
TATTCTCCTTAACAACTGGA+TGG + chr7_4:34758926-34758945 None:intergenic 35.0%
!!! GAGTCTATTTTGAAGCAAAG+AGG + chr7_4:34758998-34759017 None:intergenic 35.0%
ACATCTGGTCAACAACATGT+GGG - chr7_4:34757929-34757948 Msa1150920:three_prime_UTR 40.0%
TCTGTACTCTGCACACAAAT+GGG + chr7_4:34758105-34758124 None:intergenic 40.0%
ATCTGTACTCTGCACACAAA+TGG + chr7_4:34758106-34758125 None:intergenic 40.0%
!! ACAGATTGCTCTCAAGTTGA+AGG - chr7_4:34758120-34758139 Msa1150920:three_prime_UTR 40.0%
!! CAGATTGCTCTCAAGTTGAA+GGG - chr7_4:34758121-34758140 Msa1150920:three_prime_UTR 40.0%
!! GAGGAGAAGTTCACTTTTGT+TGG + chr7_4:34758179-34758198 None:intergenic 40.0%
ATCACAAGGGACTCTGATAT+AGG + chr7_4:34758253-34758272 None:intergenic 40.0%
TATGGATCAGAAGGCAAGAT+AGG + chr7_4:34758310-34758329 None:intergenic 40.0%
AAAATCTAGCCAAGGCTCTT+TGG + chr7_4:34758333-34758352 None:intergenic 40.0%
! AAAGAGCCTTGGCTAGATTT+TGG - chr7_4:34758332-34758351 Msa1150920:CDS 40.0%
GTTAGACCAAAATCTAGCCA+AGG + chr7_4:34758341-34758360 None:intergenic 40.0%
GATTCTTGAGAATGAGCTGA+AGG - chr7_4:34758746-34758765 Msa1150920:intron 40.0%
! CAGCTGTGTACATAGCTTTT+TGG - chr7_4:34758811-34758830 Msa1150920:CDS 40.0%
CTGGATGGTTGAGAAATTCT+TGG + chr7_4:34758911-34758930 None:intergenic 40.0%
TCTCAACCATCCAGTTGTTA+AGG - chr7_4:34758917-34758936 Msa1150920:CDS 40.0%
GGCATATTCTCCTTAACAAC+TGG + chr7_4:34758930-34758949 None:intergenic 40.0%
TAGGCAAAAAGAGGTTCTCT+AGG + chr7_4:34758954-34758973 None:intergenic 40.0%
!! GCTTTGAAGTAGGCAAAAAG+AGG + chr7_4:34758963-34758982 None:intergenic 40.0%
!! CTCATAGTGAGCTTTGAAGT+AGG + chr7_4:34758973-34758992 None:intergenic 40.0%
!! TCATCGGATCTTTGCTGTTA+GGG - chr7_4:34759055-34759074 Msa1150920:CDS 40.0%
CTATAACCTTAGATGTCACG+CGG + chr7_4:34759119-34759138 None:intergenic 40.0%
! ACTTAGTGTTGAGTGTGTTG+TGG - chr7_4:34759167-34759186 Msa1150920:five_prime_UTR 40.0%
! CTTAGTGTTGAGTGTGTTGT+GGG - chr7_4:34759168-34759187 Msa1150920:five_prime_UTR 40.0%
! TTAGTGTTGAGTGTGTTGTG+GGG - chr7_4:34759169-34759188 Msa1150920:five_prime_UTR 40.0%
ACATCTGGTCAACAACATGT+GGG - chr7_4:34757929-34757948 Msa1150920:three_prime_UTR 40.0%
TCTGTACTCTGCACACAAAT+GGG + chr7_4:34758105-34758124 None:intergenic 40.0%
ATCTGTACTCTGCACACAAA+TGG + chr7_4:34758106-34758125 None:intergenic 40.0%
!! ACAGATTGCTCTCAAGTTGA+AGG - chr7_4:34758120-34758139 Msa1150920:three_prime_UTR 40.0%
!! CAGATTGCTCTCAAGTTGAA+GGG - chr7_4:34758121-34758140 Msa1150920:three_prime_UTR 40.0%
!! GAGGAGAAGTTCACTTTTGT+TGG + chr7_4:34758179-34758198 None:intergenic 40.0%
ATCACAAGGGACTCTGATAT+AGG + chr7_4:34758253-34758272 None:intergenic 40.0%
TATGGATCAGAAGGCAAGAT+AGG + chr7_4:34758310-34758329 None:intergenic 40.0%
AAAATCTAGCCAAGGCTCTT+TGG + chr7_4:34758333-34758352 None:intergenic 40.0%
! AAAGAGCCTTGGCTAGATTT+TGG - chr7_4:34758332-34758351 Msa1150920:CDS 40.0%
GTTAGACCAAAATCTAGCCA+AGG + chr7_4:34758341-34758360 None:intergenic 40.0%
GATTCTTGAGAATGAGCTGA+AGG - chr7_4:34758746-34758765 Msa1150920:intron 40.0%
! CAGCTGTGTACATAGCTTTT+TGG - chr7_4:34758811-34758830 Msa1150920:CDS 40.0%
CTGGATGGTTGAGAAATTCT+TGG + chr7_4:34758911-34758930 None:intergenic 40.0%
TCTCAACCATCCAGTTGTTA+AGG - chr7_4:34758917-34758936 Msa1150920:CDS 40.0%
GGCATATTCTCCTTAACAAC+TGG + chr7_4:34758930-34758949 None:intergenic 40.0%
TAGGCAAAAAGAGGTTCTCT+AGG + chr7_4:34758954-34758973 None:intergenic 40.0%
!! GCTTTGAAGTAGGCAAAAAG+AGG + chr7_4:34758963-34758982 None:intergenic 40.0%
!! CTCATAGTGAGCTTTGAAGT+AGG + chr7_4:34758973-34758992 None:intergenic 40.0%
!! TCATCGGATCTTTGCTGTTA+GGG - chr7_4:34759055-34759074 Msa1150920:CDS 40.0%
CTATAACCTTAGATGTCACG+CGG + chr7_4:34759119-34759138 None:intergenic 40.0%
! ACTTAGTGTTGAGTGTGTTG+TGG - chr7_4:34759167-34759186 Msa1150920:five_prime_UTR 40.0%
! CTTAGTGTTGAGTGTGTTGT+GGG - chr7_4:34759168-34759187 Msa1150920:five_prime_UTR 40.0%
! TTAGTGTTGAGTGTGTTGTG+GGG - chr7_4:34759169-34759188 Msa1150920:five_prime_UTR 40.0%
CACATCTGGTCAACAACATG+TGG - chr7_4:34757928-34757947 Msa1150920:three_prime_UTR 45.0%
!! TGTTTATGAGTGAGGCACTG+TGG + chr7_4:34757990-34758009 None:intergenic 45.0%
GTGAAGCTATTGGGAGCTAT+AGG - chr7_4:34758076-34758095 Msa1150920:three_prime_UTR 45.0%
GCTCTTTGGTATGGATCAGA+AGG + chr7_4:34758319-34758338 None:intergenic 45.0%
TGATCCATACCAAAGAGCCT+TGG - chr7_4:34758321-34758340 Msa1150920:CDS 45.0%
GTCTAACTTCATCGACGACA+AGG - chr7_4:34758354-34758373 Msa1150920:CDS 45.0%
GCGCTCTTTCTCATCATCAA+CGG + chr7_4:34758691-34758710 None:intergenic 45.0%
GAGCGCGAGAAGAATATTGA+AGG - chr7_4:34758705-34758724 Msa1150920:intron 45.0%
GAGCTGAAGGACAAGTTCTT+TGG - chr7_4:34758759-34758778 Msa1150920:intron 45.0%
CTGAAGGACAAGTTCTTTGG+AGG - chr7_4:34758762-34758781 Msa1150920:intron 45.0%
! TTCTTTGGAGGAGAGGAGAT+TGG - chr7_4:34758774-34758793 Msa1150920:intron 45.0%
AGGAGAGGAGATTGGAATTG+TGG - chr7_4:34758782-34758801 Msa1150920:intron 45.0%
AGTGTCCCAAACTTTCCAAG+TGG - chr7_4:34758883-34758902 Msa1150920:CDS 45.0%
TGGCTCCACTTGGAAAGTTT+GGG + chr7_4:34758891-34758910 None:intergenic 45.0%
TTGGCTCCACTTGGAAAGTT+TGG + chr7_4:34758892-34758911 None:intergenic 45.0%
GAGAAATTCTTGGCTCCACT+TGG + chr7_4:34758901-34758920 None:intergenic 45.0%
GCAAAAAGAGGTTCTCTAGG+TGG + chr7_4:34758951-34758970 None:intergenic 45.0%
!! GTCATCGGATCTTTGCTGTT+AGG - chr7_4:34759054-34759073 Msa1150920:CDS 45.0%
ATTTCTCCGCGTGACATCTA+AGG - chr7_4:34759110-34759129 Msa1150920:CDS 45.0%
! TAGTGTTGAGTGTGTTGTGG+GGG - chr7_4:34759170-34759189 Msa1150920:five_prime_UTR 45.0%
CTACATCTCTGACTACAGAG+CGG + chr7_4:34759219-34759238 None:intergenic 45.0%
GTTGACCAGATGTGCAAGTA+TGG + chr7_4:34757922-34757941 None:intergenic 45.0%
CACATCTGGTCAACAACATG+TGG - chr7_4:34757928-34757947 Msa1150920:three_prime_UTR 45.0%
!! TGTTTATGAGTGAGGCACTG+TGG + chr7_4:34757990-34758009 None:intergenic 45.0%
GTGAAGCTATTGGGAGCTAT+AGG - chr7_4:34758076-34758095 Msa1150920:three_prime_UTR 45.0%
GCTCTTTGGTATGGATCAGA+AGG + chr7_4:34758319-34758338 None:intergenic 45.0%
TGATCCATACCAAAGAGCCT+TGG - chr7_4:34758321-34758340 Msa1150920:CDS 45.0%
GTCTAACTTCATCGACGACA+AGG - chr7_4:34758354-34758373 Msa1150920:CDS 45.0%
GCGCTCTTTCTCATCATCAA+CGG + chr7_4:34758691-34758710 None:intergenic 45.0%
GAGCGCGAGAAGAATATTGA+AGG - chr7_4:34758705-34758724 Msa1150920:intron 45.0%
GAGCTGAAGGACAAGTTCTT+TGG - chr7_4:34758759-34758778 Msa1150920:intron 45.0%
CTGAAGGACAAGTTCTTTGG+AGG - chr7_4:34758762-34758781 Msa1150920:intron 45.0%
! TTCTTTGGAGGAGAGGAGAT+TGG - chr7_4:34758774-34758793 Msa1150920:intron 45.0%
AGGAGAGGAGATTGGAATTG+TGG - chr7_4:34758782-34758801 Msa1150920:intron 45.0%
AGTGTCCCAAACTTTCCAAG+TGG - chr7_4:34758883-34758902 Msa1150920:CDS 45.0%
TGGCTCCACTTGGAAAGTTT+GGG + chr7_4:34758891-34758910 None:intergenic 45.0%
TTGGCTCCACTTGGAAAGTT+TGG + chr7_4:34758892-34758911 None:intergenic 45.0%
GAGAAATTCTTGGCTCCACT+TGG + chr7_4:34758901-34758920 None:intergenic 45.0%
GCAAAAAGAGGTTCTCTAGG+TGG + chr7_4:34758951-34758970 None:intergenic 45.0%
!! GTCATCGGATCTTTGCTGTT+AGG - chr7_4:34759054-34759073 Msa1150920:CDS 45.0%
ATTTCTCCGCGTGACATCTA+AGG - chr7_4:34759110-34759129 Msa1150920:CDS 45.0%
! TAGTGTTGAGTGTGTTGTGG+GGG - chr7_4:34759170-34759189 Msa1150920:five_prime_UTR 45.0%
CTACATCTCTGACTACAGAG+CGG + chr7_4:34759219-34759238 None:intergenic 45.0%
CTAGCCAAGGCTCTTTGGTA+TGG + chr7_4:34758328-34758347 None:intergenic 50.0%
! GGACAAGTTCTTTGGAGGAG+AGG - chr7_4:34758767-34758786 Msa1150920:intron 50.0%
CGCTCTGTAGTCAGAGATGT+AGG - chr7_4:34759217-34759236 Msa1150920:five_prime_UTR 50.0%
CTAGCCAAGGCTCTTTGGTA+TGG + chr7_4:34758328-34758347 None:intergenic 50.0%
! GGACAAGTTCTTTGGAGGAG+AGG - chr7_4:34758767-34758786 Msa1150920:intron 50.0%
CGCTCTGTAGTCAGAGATGT+AGG - chr7_4:34759217-34759236 Msa1150920:five_prime_UTR 50.0%
GTGGGGGATGTAGCACCATG+CGG - chr7_4:34759186-34759205 Msa1150920:five_prime_UTR 60.0%
GTGGGGGATGTAGCACCATG+CGG - chr7_4:34759186-34759205 Msa1150920:five_prime_UTR 60.0%
CAGAGCGGCTGCATACCGCA+TGG + chr7_4:34759204-34759223 None:intergenic 65.0%
CAGAGCGGCTGCATACCGCA+TGG + chr7_4:34759204-34759223 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 34757922 34759264 34757922 ID=Msa1150920;Name=Msa1150920
chr7_4 mRNA 34757922 34759264 34757922 ID=Msa1150920-mRNA-1;Parent=Msa1150920;Name=Msa1150920-mRNA-1;_AED=0.38;_eAED=0.38;_QI=133|1|1|1|1|1|2|251|225
chr7_4 exon 34757922 34758529 34757922 ID=Msa1150920-mRNA-1:exon:8250;Parent=Msa1150920-mRNA-1
chr7_4 exon 34758811 34759264 34758811 ID=Msa1150920-mRNA-1:exon:8249;Parent=Msa1150920-mRNA-1
chr7_4 five_prime_UTR 34759132 34759264 34759132 ID=Msa1150920-mRNA-1:five_prime_utr;Parent=Msa1150920-mRNA-1
chr7_4 CDS 34758811 34759131 34758811 ID=Msa1150920-mRNA-1:cds;Parent=Msa1150920-mRNA-1
chr7_4 CDS 34758173 34758529 34758173 ID=Msa1150920-mRNA-1:cds;Parent=Msa1150920-mRNA-1
chr7_4 three_prime_UTR 34757922 34758172 34757922 ID=Msa1150920-mRNA-1:three_prime_utr;Parent=Msa1150920-mRNA-1
Gene Sequence

>Msa1150920

ATGGCTACAAATCAAGAAGAAGTGAAGCTATTGGGAGCTATAGGAAGCCCATTTGTGTGCAGAGTACAGATTGCTCTCAAGTTGAAGGGAATTGAATATGAATTTCTTGAAGAAAACATGGCCAACAAAAGTGAACTTCTCCTCAAGTATAACCCAGTTTATAAAAAGATTCCAGTTTTTGTTCACAATGAAAAGCCTATATCAGAGTCCCTTGTGATTATTGAGTATATTGATGAGACTTGGAAACAAAATCCTATCTTGCCTTCTGATCCATACCAAAGAGCCTTGGCTAGATTTTGGTCTAACTTCATCGACGACAAGATCATAGCTGCTTCGATTAAAGCTGTTCATACCGTTGATGATGAGAAAGAGCGCGAGAAGAATATTGAAGGAACAATTGAGGCACTACAGATTCTTGAGAATGAGCTGAAGGACAAGTTCTTTGGAGGAGAGGAGATTGGAATTGTGGATATTGCAGCTGTGTACATAGCTTTTTGGATCCCTTTGATTCAAGACATTACAGGGTTGCAATTGTTGAATGCTGAAAAGTGTCCCAAACTTTCCAAGTGGAGCCAAGAATTTCTCAACCATCCAGTTGTTAAGGAGAATATGCCACCTAGAGAACCTCTTTTTGCCTACTTCAAAGCTCACTATGAGAGCCTCTTTGCTTCAAAATAG

Protein sequence

>Msa1150920

MATNQEEVKLLGAIGSPFVCRVQIALKLKGIEYEFLEENMANKSELLLKYNPVYKKIPVFVHNEKPISESLVIIEYIDETWKQNPILPSDPYQRALARFWSNFIDDKIIAASIKAVHTVDDEKEREKNIEGTIEALQILENELKDKFFGGEEIGIVDIAAVYIAFWIPLIQDITGLQLLNAEKCPKLSKWSQEFLNHPVVKENMPPREPLFAYFKAHYESLFASK*