Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833760 | XP_024639507.1 | 94.805 | 462 | 11 | 1 | 1 | 462 | 1 | 449 | 0.0 | 903 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833760 | sp|F4JYJ3|SFH11_ARATH | 51.200 | 375 | 149 | 5 | 87 | 461 | 22 | 362 | 1.01e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833760 | G7JW23 | 94.589 | 462 | 11 | 2 | 1 | 462 | 1 | 448 | 0.0 | 897 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094850 | Msa0833760 | 0.815745 | 7.896175e-52 | -8.615850e-47 |
| Msa0102870 | Msa0833760 | 0.802928 | 4.444925e-49 | -8.615850e-47 |
| Msa0699840 | Msa0833760 | 0.809005 | 2.343269e-50 | -8.615850e-47 |
| Msa0703270 | Msa0833760 | 0.800346 | 1.505097e-48 | -8.615850e-47 |
| Msa0742740 | Msa0833760 | 0.823882 | 1.090029e-53 | -8.615850e-47 |
| Msa0796160 | Msa0833760 | 0.942081 | 1.349169e-101 | -8.615850e-47 |
| Msa0823820 | Msa0833760 | 0.819441 | 1.159529e-52 | -8.615850e-47 |
| Msa0833760 | Msa0863010 | 0.819353 | 1.214111e-52 | -8.615850e-47 |
| Msa0833760 | Msa0896410 | 0.809133 | 2.199451e-50 | -8.615850e-47 |
| Msa0833760 | Msa0996680 | 0.802145 | 6.444646e-49 | -8.615850e-47 |
| Msa0833760 | Msa1020630 | 0.838044 | 3.633081e-57 | -8.615850e-47 |
| Msa0833760 | Msa1023290 | 0.811556 | 6.599414e-51 | -8.615850e-47 |
| Msa0833760 | Msa1031930 | 0.834750 | 2.501852e-56 | -8.615850e-47 |
| Msa0833760 | Msa1071770 | 0.819824 | 9.479183e-53 | -8.615850e-47 |
| Msa0833760 | Msa1113800 | 0.836790 | 7.613932e-57 | -8.615850e-47 |
| Msa0833760 | Msa1118600 | 0.802362 | 5.815989e-49 | -8.615850e-47 |
| Msa0833760 | Msa1132700 | 0.996492 | 3.210963e-228 | -8.615850e-47 |
| Msa0833760 | Msa1150820 | 0.818155 | 2.272279e-52 | -8.615850e-47 |
| Msa0833760 | Msa1158830 | 0.817179 | 3.771022e-52 | -8.615850e-47 |
| Msa0833760 | Msa1160500 | 0.843075 | 1.750826e-58 | -8.615850e-47 |
| Msa0833760 | Msa1181190 | 0.825270 | 5.135512e-54 | -8.615850e-47 |
| Msa0833760 | Msa1184330 | 0.855319 | 6.832549e-62 | -8.615850e-47 |
| Msa0833760 | Msa1227940 | 0.834891 | 2.306319e-56 | -8.615850e-47 |
| Msa0833760 | Msa1271040 | 0.814414 | 1.559579e-51 | -8.615850e-47 |
| Msa0833760 | Msa1439610 | 0.803243 | 3.825118e-49 | -8.615850e-47 |
| Msa0129940 | Msa0833760 | 0.818860 | 1.572054e-52 | -8.615850e-47 |
| Msa0186920 | Msa0833760 | 0.802984 | 4.327747e-49 | -8.615850e-47 |
| Msa0190690 | Msa0833760 | 0.811292 | 7.530975e-51 | -8.615850e-47 |
| Msa0191020 | Msa0833760 | 0.804786 | 1.827456e-49 | -8.615850e-47 |
| Msa0206840 | Msa0833760 | 0.822512 | 2.277101e-53 | -8.615850e-47 |
| Msa0233320 | Msa0833760 | 0.800636 | 1.313199e-48 | -8.615850e-47 |
| Msa0388770 | Msa0833760 | 0.826409 | 2.756269e-54 | -8.615850e-47 |
| Msa0393440 | Msa0833760 | 0.806142 | 9.496637e-50 | -8.615850e-47 |
| Msa0432380 | Msa0833760 | 0.805302 | 1.425233e-49 | -8.615850e-47 |
| Msa0462070 | Msa0833760 | 0.809900 | 1.505374e-50 | -8.615850e-47 |
| Msa0465400 | Msa0833760 | 0.802365 | 5.809032e-49 | -8.615850e-47 |
| Msa0475790 | Msa0833760 | 0.811237 | 7.740517e-51 | -8.615850e-47 |
| Msa0300270 | Msa0833760 | 0.804027 | 2.630753e-49 | -8.615850e-47 |
| Msa0311420 | Msa0833760 | 0.806036 | 9.995717e-50 | -8.615850e-47 |
| Msa0337540 | Msa0833760 | 0.802871 | 4.566495e-49 | -8.615850e-47 |
| Msa0361080 | Msa0833760 | 0.847780 | 9.312022e-60 | -8.615850e-47 |
| Msa0488790 | Msa0833760 | 0.818035 | 2.418568e-52 | -8.615850e-47 |
| Msa0513160 | Msa0833760 | 0.800746 | 1.247033e-48 | -8.615850e-47 |
| Msa0580440 | Msa0833760 | 0.891573 | 3.511841e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833760 | MtrunA17_Chr5g0399151 | 94.589 | 462 | 11 | 2 | 1 | 462 | 1 | 448 | 0.0 | 897 |
| Msa0833760 | MtrunA17_Chr4g0035391 | 52.336 | 321 | 133 | 3 | 53 | 369 | 44 | 348 | 6.31e-112 | 343 |
| Msa0833760 | MtrunA17_Chr5g0404711 | 51.266 | 316 | 139 | 2 | 54 | 367 | 13 | 315 | 1.14e-111 | 337 |
| Msa0833760 | MtrunA17_Chr3g0144911 | 48.235 | 340 | 158 | 3 | 54 | 388 | 44 | 370 | 9.88e-110 | 331 |
| Msa0833760 | MtrunA17_Chr1g0155521 | 53.535 | 297 | 123 | 2 | 73 | 369 | 72 | 353 | 4.35e-107 | 330 |
| Msa0833760 | MtrunA17_Chr3g0141821 | 54.579 | 273 | 111 | 1 | 93 | 365 | 71 | 330 | 1.05e-106 | 328 |
| Msa0833760 | MtrunA17_Chr8g0372651 | 52.941 | 289 | 123 | 1 | 81 | 369 | 45 | 320 | 2.90e-105 | 323 |
| Msa0833760 | MtrunA17_Chr3g0144891 | 49.682 | 314 | 143 | 2 | 56 | 367 | 36 | 336 | 4.11e-100 | 311 |
| Msa0833760 | MtrunA17_Chr7g0236461 | 48.276 | 290 | 137 | 1 | 81 | 370 | 66 | 342 | 6.42e-95 | 298 |
| Msa0833760 | MtrunA17_Chr4g0035361 | 45.748 | 341 | 161 | 5 | 116 | 453 | 2 | 321 | 1.96e-91 | 285 |
| Msa0833760 | MtrunA17_Chr3g0080051 | 45.794 | 321 | 156 | 3 | 54 | 369 | 37 | 344 | 2.24e-89 | 284 |
| Msa0833760 | MtrunA17_Chr4g0035381 | 43.279 | 305 | 156 | 3 | 92 | 392 | 61 | 352 | 2.39e-83 | 262 |
| Msa0833760 | MtrunA17_Chr8g0369291 | 47.931 | 290 | 134 | 4 | 81 | 369 | 59 | 332 | 4.16e-83 | 268 |
| Msa0833760 | MtrunA17_Chr3g0102691 | 29.130 | 230 | 140 | 6 | 75 | 301 | 5 | 214 | 3.54e-17 | 82.8 |
| Msa0833760 | MtrunA17_Chr3g0131581 | 28.452 | 239 | 127 | 6 | 109 | 340 | 63 | 264 | 4.39e-16 | 78.2 |
| Msa0833760 | MtrunA17_Chr2g0290661 | 28.042 | 189 | 128 | 3 | 115 | 301 | 38 | 220 | 5.23e-16 | 79.0 |
| Msa0833760 | MtrunA17_Chr4g0076441 | 29.082 | 196 | 129 | 4 | 110 | 301 | 26 | 215 | 2.41e-15 | 77.0 |
| Msa0833760 | MtrunA17_Chr8g0385691 | 29.536 | 237 | 123 | 7 | 109 | 338 | 43 | 242 | 7.09e-14 | 71.6 |
| Msa0833760 | MtrunA17_Chr8g0385681 | 29.630 | 243 | 115 | 9 | 109 | 338 | 46 | 245 | 1.18e-13 | 70.9 |
| Msa0833760 | MtrunA17_Chr1g0155071 | 28.889 | 225 | 127 | 8 | 116 | 338 | 46 | 239 | 5.71e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833760 | AT5G47510.1 | 51.200 | 375 | 149 | 5 | 87 | 461 | 22 | 362 | 1.03e-135 | 395 |
| Msa0833760 | AT5G47510.4 | 51.200 | 375 | 149 | 5 | 87 | 461 | 23 | 363 | 1.66e-135 | 395 |
| Msa0833760 | AT5G47510.2 | 54.192 | 334 | 132 | 2 | 87 | 412 | 23 | 343 | 2.27e-133 | 389 |
| Msa0833760 | AT5G47510.3 | 50.588 | 340 | 134 | 5 | 122 | 461 | 1 | 306 | 6.12e-120 | 353 |
| Msa0833760 | AT2G21540.3 | 48.286 | 350 | 160 | 4 | 54 | 398 | 32 | 365 | 6.80e-111 | 338 |
| Msa0833760 | AT2G21540.5 | 48.286 | 350 | 160 | 4 | 54 | 398 | 32 | 365 | 6.80e-111 | 338 |
| Msa0833760 | AT4G36490.1 | 51.104 | 317 | 139 | 3 | 52 | 366 | 14 | 316 | 1.21e-110 | 337 |
| Msa0833760 | AT2G21540.6 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.00e-110 | 336 |
| Msa0833760 | AT2G21540.2 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.00e-110 | 336 |
| Msa0833760 | AT2G21540.1 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.00e-110 | 336 |
| Msa0833760 | AT2G21540.4 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.00e-110 | 336 |
| Msa0833760 | AT2G18180.2 | 49.045 | 314 | 138 | 3 | 79 | 385 | 45 | 343 | 2.57e-109 | 334 |
| Msa0833760 | AT2G18180.1 | 49.045 | 314 | 138 | 3 | 79 | 385 | 45 | 343 | 4.10e-109 | 334 |
| Msa0833760 | AT4G39180.3 | 49.074 | 324 | 147 | 3 | 54 | 375 | 33 | 340 | 7.24e-109 | 333 |
| Msa0833760 | AT4G39180.2 | 49.074 | 324 | 147 | 3 | 54 | 375 | 33 | 340 | 7.24e-109 | 333 |
| Msa0833760 | AT4G39180.1 | 49.074 | 324 | 147 | 3 | 54 | 375 | 33 | 340 | 7.69e-109 | 333 |
| Msa0833760 | AT1G75370.1 | 51.948 | 308 | 132 | 2 | 81 | 388 | 79 | 370 | 1.43e-106 | 329 |
| Msa0833760 | AT4G39170.1 | 50.000 | 316 | 140 | 3 | 54 | 365 | 44 | 345 | 2.13e-106 | 328 |
| Msa0833760 | AT1G19650.3 | 46.197 | 355 | 165 | 5 | 64 | 414 | 50 | 382 | 4.88e-106 | 322 |
| Msa0833760 | AT1G75370.2 | 51.948 | 308 | 132 | 2 | 81 | 388 | 79 | 370 | 1.09e-105 | 328 |
| Msa0833760 | AT4G39170.2 | 50.160 | 313 | 138 | 3 | 54 | 362 | 44 | 342 | 3.21e-105 | 325 |
| Msa0833760 | AT4G34580.2 | 49.682 | 314 | 142 | 2 | 54 | 364 | 24 | 324 | 7.83e-105 | 323 |
| Msa0833760 | AT4G34580.1 | 49.682 | 314 | 142 | 2 | 54 | 364 | 24 | 324 | 7.83e-105 | 323 |
| Msa0833760 | AT1G19650.1 | 46.197 | 355 | 165 | 5 | 64 | 414 | 50 | 382 | 1.84e-104 | 323 |
| Msa0833760 | AT2G21520.2 | 48.265 | 317 | 146 | 3 | 54 | 365 | 48 | 351 | 2.90e-104 | 324 |
| Msa0833760 | AT2G21520.3 | 48.265 | 317 | 146 | 3 | 54 | 365 | 48 | 351 | 2.90e-104 | 324 |
| Msa0833760 | AT2G21520.1 | 48.265 | 317 | 146 | 3 | 54 | 365 | 44 | 347 | 4.05e-104 | 323 |
| Msa0833760 | AT3G24840.1 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.85e-103 | 319 |
| Msa0833760 | AT3G24840.6 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.85e-103 | 319 |
| Msa0833760 | AT3G24840.4 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.85e-103 | 319 |
| Msa0833760 | AT3G24840.2 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.85e-103 | 319 |
| Msa0833760 | AT3G24840.7 | 46.789 | 327 | 158 | 2 | 48 | 371 | 33 | 346 | 6.52e-103 | 318 |
| Msa0833760 | AT3G24840.3 | 46.789 | 327 | 158 | 2 | 48 | 371 | 33 | 346 | 6.52e-103 | 318 |
| Msa0833760 | AT3G24840.5 | 46.789 | 327 | 158 | 2 | 48 | 371 | 33 | 346 | 6.52e-103 | 318 |
| Msa0833760 | AT2G16380.2 | 45.205 | 365 | 174 | 5 | 41 | 392 | 3 | 354 | 1.96e-102 | 317 |
| Msa0833760 | AT2G16380.1 | 45.205 | 365 | 174 | 5 | 41 | 392 | 3 | 354 | 1.96e-102 | 317 |
| Msa0833760 | AT2G18180.4 | 49.281 | 278 | 119 | 3 | 115 | 385 | 10 | 272 | 1.21e-95 | 296 |
| Msa0833760 | AT2G18180.3 | 49.281 | 278 | 119 | 3 | 115 | 385 | 10 | 272 | 2.88e-95 | 296 |
| Msa0833760 | AT1G19650.2 | 47.697 | 304 | 138 | 3 | 111 | 414 | 28 | 310 | 2.26e-94 | 295 |
| Msa0833760 | AT5G56160.2 | 46.250 | 320 | 155 | 4 | 54 | 369 | 30 | 336 | 5.19e-94 | 293 |
| Msa0833760 | AT5G56160.1 | 46.250 | 320 | 155 | 4 | 54 | 369 | 30 | 336 | 1.16e-93 | 295 |
| Msa0833760 | AT5G56160.3 | 46.250 | 320 | 155 | 4 | 54 | 369 | 30 | 336 | 1.16e-93 | 295 |
| Msa0833760 | AT2G18180.5 | 50.769 | 260 | 106 | 3 | 133 | 385 | 1 | 245 | 2.32e-91 | 285 |
| Msa0833760 | AT1G55690.3 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.20e-89 | 285 |
| Msa0833760 | AT1G55690.2 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.61e-89 | 285 |
| Msa0833760 | AT1G55690.4 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.61e-89 | 285 |
| Msa0833760 | AT1G55690.1 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.61e-89 | 285 |
| Msa0833760 | AT1G55690.5 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.61e-89 | 285 |
| Msa0833760 | AT2G16380.3 | 49.237 | 262 | 118 | 2 | 133 | 392 | 1 | 249 | 2.56e-85 | 269 |
| Msa0833760 | AT5G47730.4 | 28.054 | 221 | 144 | 6 | 90 | 301 | 6 | 220 | 2.91e-16 | 80.5 |
| Msa0833760 | AT5G47730.1 | 28.054 | 221 | 144 | 6 | 90 | 301 | 6 | 220 | 2.91e-16 | 80.5 |
| Msa0833760 | AT1G55840.1 | 28.111 | 217 | 136 | 5 | 89 | 301 | 20 | 220 | 7.76e-16 | 79.0 |
| Msa0833760 | AT1G55840.2 | 29.592 | 196 | 128 | 4 | 110 | 301 | 4 | 193 | 9.56e-16 | 78.2 |
| Msa0833760 | AT5G47730.2 | 29.825 | 171 | 112 | 4 | 133 | 301 | 1 | 165 | 2.55e-13 | 70.9 |
| Msa0833760 | AT5G47730.3 | 29.825 | 171 | 112 | 4 | 133 | 301 | 1 | 165 | 2.55e-13 | 70.9 |
| Msa0833760 | AT1G01630.1 | 28.333 | 240 | 122 | 9 | 109 | 338 | 46 | 245 | 9.31e-12 | 65.5 |
Find 96 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACACTAATTATGTATT+TGG | 0.075644 | 5_4:-6857344 | None:intergenic |
| ATTAGTGTTGATAATAATTT+TGG | 0.089634 | 5_4:+6857355 | Msa0833760:three_prime_UTR |
| AACATTCCTGTTTCAGGTTT+TGG | 0.101416 | 5_4:+6856014 | Msa0833760:CDS |
| ATACAAATTTATTGAGTATT+TGG | 0.124347 | 5_4:-6854321 | None:intergenic |
| ATCTCCAACATTCCTGTTTC+AGG | 0.144392 | 5_4:+6856008 | Msa0833760:CDS |
| TGAATCATTTCTAACAATTC+TGG | 0.209519 | 5_4:-6856322 | None:intergenic |
| TCTTATCCGCTCATGAAATT+TGG | 0.248183 | 5_4:+6854538 | Msa0833760:CDS |
| ATTTGGAAGGAGTAAAAGTT+TGG | 0.279082 | 5_4:+6854555 | Msa0833760:CDS |
| TTTATTATTAATGCTGGTTC+TGG | 0.287893 | 5_4:+6855814 | Msa0833760:CDS |
| TCAACAATTTGTTCATCATT+TGG | 0.301735 | 5_4:-6854604 | None:intergenic |
| GATCTTCCTACTACACAAAA+AGG | 0.336401 | 5_4:+6854478 | Msa0833760:CDS |
| CCTGTGTATATTGAGAGAAT+TGG | 0.338897 | 5_4:+6855225 | Msa0833760:CDS |
| ATAATTGAGAAACATATCTT+TGG | 0.343213 | 5_4:-6854829 | None:intergenic |
| ATGATTATCATACTCTTCTA+AGG | 0.346356 | 5_4:+6854677 | Msa0833760:CDS |
| TGCATCATCTTCTGGTGTTA+AGG | 0.348901 | 5_4:+6854411 | Msa0833760:CDS |
| TCCATGAAGATGTACCTTGC+AGG | 0.355379 | 5_4:-6855524 | None:intergenic |
| CTGTCTTCGCCTTTCGCCGT+TGG | 0.369283 | 5_4:-6854355 | None:intergenic |
| TCAACACTAATTATGTATTT+GGG | 0.369346 | 5_4:-6857343 | None:intergenic |
| AGAAAAGATGCATCATCTTC+TGG | 0.370086 | 5_4:+6854403 | Msa0833760:CDS |
| AATAGGAGGATGAATTGATT+TGG | 0.371367 | 5_4:-6854443 | None:intergenic |
| TGTTTCTCAATTATCTGAAA+TGG | 0.373010 | 5_4:+6854838 | Msa0833760:CDS |
| GCATCATCTTCTGGTGTTAA+GGG | 0.378251 | 5_4:+6854412 | Msa0833760:CDS |
| ATTATGTTAGCTTTCTAGAA+TGG | 0.382824 | 5_4:-6857462 | None:intergenic |
| AGAATTGTTAGAAATGATTC+AGG | 0.387877 | 5_4:+6856324 | Msa0833760:CDS |
| GTATGATAATCATTGTGTTT+AGG | 0.394177 | 5_4:-6854667 | None:intergenic |
| GCCTGCAAGGTACATCTTCA+TGG | 0.400385 | 5_4:+6855523 | Msa0833760:CDS |
| AAACTCTTTATTATTAATGC+TGG | 0.402252 | 5_4:+6855808 | Msa0833760:CDS |
| ATAATGATCTGTTACCGTTT+CGG | 0.410038 | 5_4:-6856712 | None:intergenic |
| AGCTTCCACCACAAGTATCT+TGG | 0.410693 | 5_4:+6855377 | Msa0833760:CDS |
| ATTTATTGAGTATTTGGATA+AGG | 0.414304 | 5_4:-6854315 | None:intergenic |
| ATAAGAAAACAATGACTTGA+TGG | 0.436946 | 5_4:-6854521 | None:intergenic |
| AAGGAGTAAAAGTTTGGAAA+AGG | 0.439103 | 5_4:+6854561 | Msa0833760:CDS |
| TCCTCCTATTGAAACGCATT+GGG | 0.444721 | 5_4:+6854456 | Msa0833760:CDS |
| AGATCCCAATGCGTTTCAAT+AGG | 0.448836 | 5_4:-6854460 | None:intergenic |
| TAGAACCCAAAACCTGAAAC+AGG | 0.449858 | 5_4:-6856020 | None:intergenic |
| AGTTTGGAAAAGGTTCTAGA+AGG | 0.449950 | 5_4:+6854571 | Msa0833760:CDS |
| AATTGCACATGTTCTGAGTA+TGG | 0.450333 | 5_4:+6856262 | Msa0833760:CDS |
| AGATGATCTAAGTATGTGTT+TGG | 0.450664 | 5_4:+6856812 | Msa0833760:CDS |
| CGCGAAATGCTTTCACGTGA+GGG | 0.453780 | 5_4:+6854634 | Msa0833760:CDS |
| TCGAGTCGACATGATTCATA+AGG | 0.459041 | 5_4:+6854872 | Msa0833760:CDS |
| TTATGTTAGCTTTCTAGAAT+GGG | 0.460793 | 5_4:-6857461 | None:intergenic |
| GATTGGCTTGAAGCTAGTCT+TGG | 0.461154 | 5_4:+6856897 | Msa0833760:CDS |
| ATCCTCCTATTGAAACGCAT+TGG | 0.466005 | 5_4:+6854455 | Msa0833760:CDS |
| TGAAAATTATAAGTTACATA+TGG | 0.473694 | 5_4:-6857429 | None:intergenic |
| ATGTTATTATTCTATCATAG+TGG | 0.478240 | 5_4:+6857276 | Msa0833760:three_prime_UTR |
| CTTCTGGTGTTAAGGGATTG+AGG | 0.494321 | 5_4:+6854419 | Msa0833760:CDS |
| CTTGATAAGCCTTTCTTGTG+TGG | 0.496556 | 5_4:-6855280 | None:intergenic |
| CTGTGTATATTGAGAGAATT+GGG | 0.498675 | 5_4:+6855226 | Msa0833760:CDS |
| TGTCATTGAGCTCACCATCT+TGG | 0.505312 | 5_4:-6857056 | None:intergenic |
| ACAAGTATCTTGGATGTCAA+TGG | 0.505672 | 5_4:+6855387 | Msa0833760:CDS |
| AAGTATGTGTTTGGCACTTG+AGG | 0.508698 | 5_4:+6856821 | Msa0833760:CDS |
| TTGCTACTGTGCGTTCACTT+AGG | 0.508717 | 5_4:-6855870 | None:intergenic |
| GGCAAATAACCACACAAGAA+AGG | 0.513788 | 5_4:+6855271 | Msa0833760:CDS |
| TCGCGAAATGCTTTCACGTG+AGG | 0.516953 | 5_4:+6854633 | Msa0833760:CDS |
| GAGACAACAAGGGCTAGAAC+AGG | 0.521228 | 5_4:+6856843 | Msa0833760:CDS |
| CTAGAACAGGCTTGTCATGT+AGG | 0.524567 | 5_4:+6856856 | Msa0833760:CDS |
| CTCCTTCCAAATTTCATGAG+CGG | 0.525376 | 5_4:-6854544 | None:intergenic |
| GTTCTGGCTTTAAGATGTTG+TGG | 0.526574 | 5_4:+6855830 | Msa0833760:CDS |
| AAAACCTGAAACAGGAATGT+TGG | 0.535738 | 5_4:-6856012 | None:intergenic |
| TTAGCTGCTAATGAACATGC+AGG | 0.545388 | 5_4:-6855345 | None:intergenic |
| ATGAGTACTCCAACGGCGAA+AGG | 0.545746 | 5_4:+6854346 | Msa0833760:CDS |
| GGTTGCTTGATGAGTGATCA+AGG | 0.549060 | 5_4:+6856286 | Msa0833760:CDS |
| TACTATCCTCATGGATACCA+TGG | 0.558498 | 5_4:+6855183 | Msa0833760:CDS |
| TCCCAATGCGTTTCAATAGG+AGG | 0.565630 | 5_4:-6854457 | None:intergenic |
| CATGCAGACAACGGAAGAGA+TGG | 0.568473 | 5_4:+6856641 | Msa0833760:intron |
| CTTTGACGTCAAGGTTTCTG+CGG | 0.568605 | 5_4:+6854781 | Msa0833760:intron |
| TTACATATGGTATCATGTTG+TGG | 0.571513 | 5_4:-6857416 | None:intergenic |
| ATCCGCTCATGAAATTTGGA+AGG | 0.576650 | 5_4:+6854542 | Msa0833760:CDS |
| AAATGATGAACAAATTGTTG+AGG | 0.576847 | 5_4:+6854606 | Msa0833760:CDS |
| AGGATCATTGATGTCCGAAA+CGG | 0.582632 | 5_4:+6856698 | Msa0833760:CDS |
| TGATAATCATTGTGTTTAGG+TGG | 0.583255 | 5_4:-6854664 | None:intergenic |
| CACAACAATGTGGTTTCAGA+AGG | 0.586412 | 5_4:+6856678 | Msa0833760:CDS |
| GATGTTGTGGAAAGCAGTGA+AGG | 0.591263 | 5_4:+6855843 | Msa0833760:CDS |
| AGAAAATCAACATTCGTTCG+TGG | 0.592508 | 5_4:+6857379 | Msa0833760:three_prime_UTR |
| CAATTATCTGAAATGGCGAA+AGG | 0.593477 | 5_4:+6854845 | Msa0833760:CDS |
| CTAATTTCTCAAAGCCTGCA+AGG | 0.598822 | 5_4:+6855510 | Msa0833760:CDS |
| TTACCTCAGTGTGTTGCTAG+AGG | 0.609354 | 5_4:+6856044 | Msa0833760:CDS |
| TGCCACATTTATCAACTCCA+TGG | 0.612313 | 5_4:-6855200 | None:intergenic |
| CCAATTCTCTCAATATACAC+AGG | 0.625976 | 5_4:-6855225 | None:intergenic |
| TGGCACTTGAGGAGACAACA+AGG | 0.626058 | 5_4:+6856832 | Msa0833760:CDS |
| TGCACTTCAAGACACCAAGA+TGG | 0.631706 | 5_4:+6857042 | Msa0833760:CDS |
| TAGCTGCTAATGAACATGCA+GGG | 0.636345 | 5_4:-6855344 | None:intergenic |
| TGATGAGTGATCAAGGCCCA+TGG | 0.641896 | 5_4:+6856293 | Msa0833760:CDS |
| ATTGACATCCAAGATACTTG+TGG | 0.642379 | 5_4:-6855385 | None:intergenic |
| TGATAGATATTAACAAACTG+TGG | 0.642658 | 5_4:+6855250 | Msa0833760:CDS |
| TGATAGCAGTTATTATCCTG+AGG | 0.642954 | 5_4:+6855559 | Msa0833760:CDS |
| CAGACAACGGAAGAGATGGA+TGG | 0.654863 | 5_4:+6856645 | Msa0833760:intron |
| GACATCCAAGATACTTGTGG+TGG | 0.658366 | 5_4:-6855382 | None:intergenic |
| TGTATGAATGAGTACTCCAA+CGG | 0.664945 | 5_4:+6854339 | Msa0833760:exon |
| TACCATGGAGTTGATAAATG+TGG | 0.686716 | 5_4:+6855198 | Msa0833760:CDS |
| TGCTAGAGGATATTGATCCG+AGG | 0.699774 | 5_4:+6856058 | Msa0833760:CDS |
| GGCACTTGAGGAGACAACAA+GGG | 0.705217 | 5_4:+6856833 | Msa0833760:CDS |
| TGCACATGTTCTGAGTATGG+AGG | 0.721718 | 5_4:+6856265 | Msa0833760:CDS |
| TCAACTCCATGGTATCCATG+AGG | 0.729821 | 5_4:-6855189 | None:intergenic |
| TATCCTCTAGCAACACACTG+AGG | 0.753762 | 5_4:-6856047 | None:intergenic |
| TGCGTGCGAACACAACAATG+TGG | 0.799380 | 5_4:+6856668 | Msa0833760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGTTTTTAAAAAGTTA+TGG | - | chr5_4:6854993-6855012 | None:intergenic | 10.0% |
| !! | ATACAAATTTATTGAGTATT+TGG | - | chr5_4:6854324-6854343 | None:intergenic | 15.0% |
| !!! | ATATGAAATTTTTATTTGGT+TGG | + | chr5_4:6854937-6854956 | Msa0833760:intron | 15.0% |
| !!! | TAATCAATTAAATTTGTTCT+TGG | - | chr5_4:6856533-6856552 | None:intergenic | 15.0% |
| !!! | ATTAGTGTTGATAATAATTT+TGG | + | chr5_4:6857355-6857374 | Msa0833760:three_prime_UTR | 15.0% |
| !!! | TTAGTGTTGATAATAATTTT+GGG | + | chr5_4:6857356-6857375 | Msa0833760:three_prime_UTR | 15.0% |
| !! | TGAAAATTATAAGTTACATA+TGG | - | chr5_4:6857432-6857451 | None:intergenic | 15.0% |
| !! | ATTTATTGAGTATTTGGATA+AGG | - | chr5_4:6854318-6854337 | None:intergenic | 20.0% |
| !! | ATAATTGAGAAACATATCTT+TGG | - | chr5_4:6854832-6854851 | None:intergenic | 20.0% |
| !! | AACAAATTAAAACTCAACTA+TGG | - | chr5_4:6855094-6855113 | None:intergenic | 20.0% |
| !! | GTGTTTCATAATTTACTATA+TGG | + | chr5_4:6855434-6855453 | Msa0833760:intron | 20.0% |
| !!! | AATTTTAATCGACTTCAATA+GGG | - | chr5_4:6855762-6855781 | None:intergenic | 20.0% |
| !! | AAACTCTTTATTATTAATGC+TGG | + | chr5_4:6855808-6855827 | Msa0833760:CDS | 20.0% |
| !! | GTAACATATTCATCAAAAAA+AGG | - | chr5_4:6856144-6856163 | None:intergenic | 20.0% |
| !! | ATATGTTACTACTTACAATT+AGG | + | chr5_4:6856155-6856174 | Msa0833760:intron | 20.0% |
| !! | AAATCTAAGAGTTTCATTAA+AGG | - | chr5_4:6856199-6856218 | None:intergenic | 20.0% |
| !! | TTGAATAACTCTAATTTATG+TGG | - | chr5_4:6856495-6856514 | None:intergenic | 20.0% |
| !! | TAGCATTACAAAAAATTGAT+TGG | + | chr5_4:6856880-6856899 | Msa0833760:CDS | 20.0% |
| !! | ATGTTATTATTCTATCATAG+TGG | + | chr5_4:6857276-6857295 | Msa0833760:three_prime_UTR | 20.0% |
| !! | TCAACACTAATTATGTATTT+GGG | - | chr5_4:6857346-6857365 | None:intergenic | 20.0% |
| !! | ATCAACACTAATTATGTATT+TGG | - | chr5_4:6857347-6857366 | None:intergenic | 20.0% |
| !!! | TTTTCTGCTTATAGTTTTGA+AGG | + | chr5_4:6854288-6854307 | Msa0833760:five_prime_UTR | 25.0% |
| ! | ATAAGAAAACAATGACTTGA+TGG | - | chr5_4:6854524-6854543 | None:intergenic | 25.0% |
| !! | TCAACAATTTGTTCATCATT+TGG | - | chr5_4:6854607-6854626 | None:intergenic | 25.0% |
| ! | AAATGATGAACAAATTGTTG+AGG | + | chr5_4:6854606-6854625 | Msa0833760:CDS | 25.0% |
| ! | GTATGATAATCATTGTGTTT+AGG | - | chr5_4:6854670-6854689 | None:intergenic | 25.0% |
| ! | ATGATTATCATACTCTTCTA+AGG | + | chr5_4:6854677-6854696 | Msa0833760:CDS | 25.0% |
| !! | TAAACATGATTTAGAACAGA+AGG | - | chr5_4:6854735-6854754 | None:intergenic | 25.0% |
| !! | TCTGTTCTAAATCATGTTTA+TGG | + | chr5_4:6854735-6854754 | Msa0833760:intron | 25.0% |
| ! | TGTTTCTCAATTATCTGAAA+TGG | + | chr5_4:6854838-6854857 | Msa0833760:CDS | 25.0% |
| !! | TTTTGATGTCATTCATTTTC+TGG | + | chr5_4:6855113-6855132 | Msa0833760:intron | 25.0% |
| ! | TGATAGATATTAACAAACTG+TGG | + | chr5_4:6855250-6855269 | Msa0833760:CDS | 25.0% |
| !!! | GAATTTTAATCGACTTCAAT+AGG | - | chr5_4:6855763-6855782 | None:intergenic | 25.0% |
| !!! | TTTATTATTAATGCTGGTTC+TGG | + | chr5_4:6855814-6855833 | Msa0833760:CDS | 25.0% |
| !!! | TATCAAAGATTTTTTCACCT+CGG | + | chr5_4:6855917-6855936 | Msa0833760:intron | 25.0% |
| !!! | ATACAAAAGTCATTTTACCT+CGG | - | chr5_4:6856078-6856097 | None:intergenic | 25.0% |
| ! | TGAATCATTTCTAACAATTC+TGG | - | chr5_4:6856325-6856344 | None:intergenic | 25.0% |
| ! | AGAATTGTTAGAAATGATTC+AGG | + | chr5_4:6856324-6856343 | Msa0833760:CDS | 25.0% |
| ! | TTTATTTGTCTTGTAGAAAC+AGG | + | chr5_4:6856405-6856424 | Msa0833760:intron | 25.0% |
| ! | TATAGTTGTCACGAAAAAAT+GGG | + | chr5_4:6856435-6856454 | Msa0833760:intron | 25.0% |
| ! | AAAATTATTCATGCAGACAA+CGG | + | chr5_4:6856632-6856651 | Msa0833760:intron | 25.0% |
| ! | CATTTAACTATGTTTAAGCA+AGG | - | chr5_4:6856772-6856791 | None:intergenic | 25.0% |
| ! | AATTTCTCTATGTTAAACCT+AGG | + | chr5_4:6856950-6856969 | Msa0833760:intron | 25.0% |
| ! | ATTTCTCTATGTTAAACCTA+GGG | + | chr5_4:6856951-6856970 | Msa0833760:intron | 25.0% |
| !!! | TGTTTCTTTTTTTCTCTTTC+AGG | + | chr5_4:6857118-6857137 | Msa0833760:intron | 25.0% |
| !! | AAAAAAGAGTTGATTATGTC+AGG | + | chr5_4:6857320-6857339 | Msa0833760:three_prime_UTR | 25.0% |
| AATAGGAGGATGAATTGATT+TGG | - | chr5_4:6854446-6854465 | None:intergenic | 30.0% | |
| ! | TTCTTTCCTTTTTGTGTAGT+AGG | - | chr5_4:6854487-6854506 | None:intergenic | 30.0% |
| ATTTGGAAGGAGTAAAAGTT+TGG | + | chr5_4:6854555-6854574 | Msa0833760:CDS | 30.0% | |
| AAGGAGTAAAAGTTTGGAAA+AGG | + | chr5_4:6854561-6854580 | Msa0833760:CDS | 30.0% | |
| TGATAATCATTGTGTTTAGG+TGG | - | chr5_4:6854667-6854686 | None:intergenic | 30.0% | |
| CTAAATCATGTTTATGGACT+TGG | + | chr5_4:6854741-6854760 | Msa0833760:intron | 30.0% | |
| ! | ATAAGGTGAATTGACTCAAA+AGG | + | chr5_4:6854889-6854908 | Msa0833760:intron | 30.0% |
| !! | TCATTTTCTGGTACATAATC+AGG | + | chr5_4:6855125-6855144 | Msa0833760:intron | 30.0% |
| GTGAAAAAATACTATCCTCA+TGG | + | chr5_4:6855174-6855193 | Msa0833760:CDS | 30.0% | |
| CTGTGTATATTGAGAGAATT+GGG | + | chr5_4:6855226-6855245 | Msa0833760:CDS | 30.0% | |
| CATAACCAAATCAGCATTAT+TGG | - | chr5_4:6855461-6855480 | None:intergenic | 30.0% | |
| CAGTAGCAAAAATTCAAGTA+CGG | + | chr5_4:6855884-6855903 | Msa0833760:intron | 30.0% | |
| AGTTGCTACTGAAAAAATCA+CGG | - | chr5_4:6856108-6856127 | None:intergenic | 30.0% | |
| AAAGGTAGAACATCACAAAA+AGG | - | chr5_4:6856181-6856200 | None:intergenic | 30.0% | |
| !! | AGTAACTTGCCAACATTTTT+GGG | + | chr5_4:6856235-6856254 | Msa0833760:intron | 30.0% |
| ! | ACAATTCTGGATTTTTCCAT+GGG | - | chr5_4:6856312-6856331 | None:intergenic | 30.0% |
| ! | AACAATTCTGGATTTTTCCA+TGG | - | chr5_4:6856313-6856332 | None:intergenic | 30.0% |
| CTATAGTTGTCACGAAAAAA+TGG | + | chr5_4:6856434-6856453 | Msa0833760:intron | 30.0% | |
| TTATTCAACTACCATGCTTT+CGG | + | chr5_4:6856507-6856526 | Msa0833760:intron | 30.0% | |
| ATAATGATCTGTTACCGTTT+CGG | - | chr5_4:6856715-6856734 | None:intergenic | 30.0% | |
| TACCTATGTCCTTATTATGT+AGG | + | chr5_4:6856743-6856762 | Msa0833760:intron | 30.0% | |
| ACCTATGTCCTTATTATGTA+GGG | + | chr5_4:6856744-6856763 | Msa0833760:intron | 30.0% | |
| GCTTAAACATAGTTAAATGC+AGG | + | chr5_4:6856773-6856792 | Msa0833760:intron | 30.0% | |
| AGATGATCTAAGTATGTGTT+TGG | + | chr5_4:6856812-6856831 | Msa0833760:CDS | 30.0% | |
| TAGGGAATCCAATATGTTTA+GGG | + | chr5_4:6856969-6856988 | Msa0833760:intron | 30.0% | |
| GCAAATTACCCTAAACATAT+TGG | - | chr5_4:6856980-6856999 | None:intergenic | 30.0% | |
| TTACATATGGTATCATGTTG+TGG | - | chr5_4:6857419-6857438 | None:intergenic | 30.0% | |
| TGTATGAATGAGTACTCCAA+CGG | + | chr5_4:6854339-6854358 | Msa0833760:exon | 35.0% | |
| AGAAAAGATGCATCATCTTC+TGG | + | chr5_4:6854403-6854422 | Msa0833760:CDS | 35.0% | |
| GATCTTCCTACTACACAAAA+AGG | + | chr5_4:6854478-6854497 | Msa0833760:CDS | 35.0% | |
| TCTTATCCGCTCATGAAATT+TGG | + | chr5_4:6854538-6854557 | Msa0833760:CDS | 35.0% | |
| !! | AGTTTGGAAAAGGTTCTAGA+AGG | + | chr5_4:6854571-6854590 | Msa0833760:CDS | 35.0% |
| ! | CAATTATCTGAAATGGCGAA+AGG | + | chr5_4:6854845-6854864 | Msa0833760:CDS | 35.0% |
| !! | TACCATGGAGTTGATAAATG+TGG | + | chr5_4:6855198-6855217 | Msa0833760:CDS | 35.0% |
| CCAATTCTCTCAATATACAC+AGG | - | chr5_4:6855228-6855247 | None:intergenic | 35.0% | |
| CCTGTGTATATTGAGAGAAT+TGG | + | chr5_4:6855225-6855244 | Msa0833760:CDS | 35.0% | |
| ATTGACATCCAAGATACTTG+TGG | - | chr5_4:6855388-6855407 | None:intergenic | 35.0% | |
| ACAAGTATCTTGGATGTCAA+TGG | + | chr5_4:6855387-6855406 | Msa0833760:CDS | 35.0% | |
| ! | ATGGTCCAATAATGCTGATT+TGG | + | chr5_4:6855453-6855472 | Msa0833760:intron | 35.0% |
| !! | AATGCTGATTTGGTTATGTG+TGG | + | chr5_4:6855463-6855482 | Msa0833760:intron | 35.0% |
| TGTGGTTGTATTATTCTTCC+AGG | + | chr5_4:6855481-6855500 | Msa0833760:intron | 35.0% | |
| GTGGTTGTATTATTCTTCCA+GGG | + | chr5_4:6855482-6855501 | Msa0833760:intron | 35.0% | |
| TTGAGAAATTAGACATTCCC+TGG | - | chr5_4:6855502-6855521 | None:intergenic | 35.0% | |
| TGATAGCAGTTATTATCCTG+AGG | + | chr5_4:6855559-6855578 | Msa0833760:CDS | 35.0% | |
| !! | TGATCAACAAAAAGTACCTC+AGG | - | chr5_4:6855578-6855597 | None:intergenic | 35.0% |
| TTTGTTGATCATAGCTCATG+CGG | + | chr5_4:6855587-6855606 | Msa0833760:intron | 35.0% | |
| AAAACCTGAAACAGGAATGT+TGG | - | chr5_4:6856015-6856034 | None:intergenic | 35.0% | |
| !!! | AACATTCCTGTTTCAGGTTT+TGG | + | chr5_4:6856014-6856033 | Msa0833760:CDS | 35.0% |
| !!! | ACATTCCTGTTTCAGGTTTT+GGG | + | chr5_4:6856015-6856034 | Msa0833760:CDS | 35.0% |
| !! | CAGTAACTTGCCAACATTTT+TGG | + | chr5_4:6856234-6856253 | Msa0833760:intron | 35.0% |
| CAATTACCACCCAAAAATGT+TGG | - | chr5_4:6856247-6856266 | None:intergenic | 35.0% | |
| ! | AATTGCACATGTTCTGAGTA+TGG | + | chr5_4:6856262-6856281 | Msa0833760:CDS | 35.0% |
| AGGTTTGTCAATATCAAGAG+CGG | + | chr5_4:6856344-6856363 | Msa0833760:intron | 35.0% | |
| GAAAAGCTACTTATCGTGAA+AGG | - | chr5_4:6856587-6856606 | None:intergenic | 35.0% | |
| ! | TTCACGATAAGTAGCTTTTC+TGG | + | chr5_4:6856587-6856606 | Msa0833760:intron | 35.0% |
| TCTGGTAGAAATAACTGACA+AGG | + | chr5_4:6856605-6856624 | Msa0833760:intron | 35.0% | |
| TCCCTACATAATAAGGACAT+AGG | - | chr5_4:6856748-6856767 | None:intergenic | 35.0% | |
| CTAAACATATTGGATTCCCT+AGG | - | chr5_4:6856970-6856989 | None:intergenic | 35.0% | |
| CTAGGGAATCCAATATGTTT+AGG | + | chr5_4:6856968-6856987 | Msa0833760:intron | 35.0% | |
| AGAAAATCAACATTCGTTCG+TGG | + | chr5_4:6857379-6857398 | Msa0833760:three_prime_UTR | 35.0% | |
| ! | TGCATCATCTTCTGGTGTTA+AGG | + | chr5_4:6854411-6854430 | Msa0833760:CDS | 40.0% |
| ! | GCATCATCTTCTGGTGTTAA+GGG | + | chr5_4:6854412-6854431 | Msa0833760:CDS | 40.0% |
| ATCCTCCTATTGAAACGCAT+TGG | + | chr5_4:6854455-6854474 | Msa0833760:CDS | 40.0% | |
| TCCTCCTATTGAAACGCATT+GGG | + | chr5_4:6854456-6854475 | Msa0833760:CDS | 40.0% | |
| AGATCCCAATGCGTTTCAAT+AGG | - | chr5_4:6854463-6854482 | None:intergenic | 40.0% | |
| ATCCGCTCATGAAATTTGGA+AGG | + | chr5_4:6854542-6854561 | Msa0833760:CDS | 40.0% | |
| CTCCTTCCAAATTTCATGAG+CGG | - | chr5_4:6854547-6854566 | None:intergenic | 40.0% | |
| TCGAGTCGACATGATTCATA+AGG | + | chr5_4:6854872-6854891 | Msa0833760:CDS | 40.0% | |
| TACTATCCTCATGGATACCA+TGG | + | chr5_4:6855183-6855202 | Msa0833760:CDS | 40.0% | |
| TGCCACATTTATCAACTCCA+TGG | - | chr5_4:6855203-6855222 | None:intergenic | 40.0% | |
| GGCAAATAACCACACAAGAA+AGG | + | chr5_4:6855271-6855290 | Msa0833760:CDS | 40.0% | |
| CTTGATAAGCCTTTCTTGTG+TGG | - | chr5_4:6855283-6855302 | None:intergenic | 40.0% | |
| TAGCTGCTAATGAACATGCA+GGG | - | chr5_4:6855347-6855366 | None:intergenic | 40.0% | |
| TTAGCTGCTAATGAACATGC+AGG | - | chr5_4:6855348-6855367 | None:intergenic | 40.0% | |
| CTAATTTCTCAAAGCCTGCA+AGG | + | chr5_4:6855510-6855529 | Msa0833760:CDS | 40.0% | |
| !! | GTTCTGGCTTTAAGATGTTG+TGG | + | chr5_4:6855830-6855849 | Msa0833760:CDS | 40.0% |
| TGTATCAACCTCTAACTGAC+AGG | + | chr5_4:6855969-6855988 | Msa0833760:intron | 40.0% | |
| AACACAAACCTGTCAGTTAG+AGG | - | chr5_4:6855980-6855999 | None:intergenic | 40.0% | |
| ATCTCCAACATTCCTGTTTC+AGG | + | chr5_4:6856008-6856027 | Msa0833760:CDS | 40.0% | |
| TAGAACCCAAAACCTGAAAC+AGG | - | chr5_4:6856023-6856042 | None:intergenic | 40.0% | |
| !! | AACTTGCCAACATTTTTGGG+TGG | + | chr5_4:6856238-6856257 | Msa0833760:CDS | 40.0% |
| CACAACAATGTGGTTTCAGA+AGG | + | chr5_4:6856678-6856697 | Msa0833760:CDS | 40.0% | |
| AGGATCATTGATGTCCGAAA+CGG | + | chr5_4:6856698-6856717 | Msa0833760:CDS | 40.0% | |
| GCAAGGATCCCTACATAATA+AGG | - | chr5_4:6856755-6856774 | None:intergenic | 40.0% | |
| AAGTATGTGTTTGGCACTTG+AGG | + | chr5_4:6856821-6856840 | Msa0833760:CDS | 40.0% | |
| ! | CTTCTGGTGTTAAGGGATTG+AGG | + | chr5_4:6854419-6854438 | Msa0833760:CDS | 45.0% |
| TCCCAATGCGTTTCAATAGG+AGG | - | chr5_4:6854460-6854479 | None:intergenic | 45.0% | |
| CTGTATTGCCTTTGACGTCA+AGG | + | chr5_4:6854772-6854791 | Msa0833760:intron | 45.0% | |
| CTTTGACGTCAAGGTTTCTG+CGG | + | chr5_4:6854781-6854800 | Msa0833760:intron | 45.0% | |
| TCAACTCCATGGTATCCATG+AGG | - | chr5_4:6855192-6855211 | None:intergenic | 45.0% | |
| AGCTTCCACCACAAGTATCT+TGG | + | chr5_4:6855377-6855396 | Msa0833760:CDS | 45.0% | |
| GACATCCAAGATACTTGTGG+TGG | - | chr5_4:6855385-6855404 | None:intergenic | 45.0% | |
| TCCATGAAGATGTACCTTGC+AGG | - | chr5_4:6855527-6855546 | None:intergenic | 45.0% | |
| TAGCTCATGCGGAGAAGATT+TGG | + | chr5_4:6855598-6855617 | Msa0833760:intron | 45.0% | |
| GATGTTGTGGAAAGCAGTGA+AGG | + | chr5_4:6855843-6855862 | Msa0833760:CDS | 45.0% | |
| TTGCTACTGTGCGTTCACTT+AGG | - | chr5_4:6855873-6855892 | None:intergenic | 45.0% | |
| TGTGCAAAACATTGCATCCG+AGG | - | chr5_4:6855937-6855956 | None:intergenic | 45.0% | |
| ! | TTACCTCAGTGTGTTGCTAG+AGG | + | chr5_4:6856044-6856063 | Msa0833760:CDS | 45.0% |
| TATCCTCTAGCAACACACTG+AGG | - | chr5_4:6856050-6856069 | None:intergenic | 45.0% | |
| TGCTAGAGGATATTGATCCG+AGG | + | chr5_4:6856058-6856077 | Msa0833760:CDS | 45.0% | |
| ! | TGCACATGTTCTGAGTATGG+AGG | + | chr5_4:6856265-6856284 | Msa0833760:CDS | 45.0% |
| GGTTGCTTGATGAGTGATCA+AGG | + | chr5_4:6856286-6856305 | Msa0833760:CDS | 45.0% | |
| TTTGTTCTTGGCCGAAAGCA+TGG | - | chr5_4:6856521-6856540 | None:intergenic | 45.0% | |
| CTAGAACAGGCTTGTCATGT+AGG | + | chr5_4:6856856-6856875 | Msa0833760:CDS | 45.0% | |
| !! | GATTGGCTTGAAGCTAGTCT+TGG | + | chr5_4:6856897-6856916 | Msa0833760:CDS | 45.0% |
| TGCACTTCAAGACACCAAGA+TGG | + | chr5_4:6857042-6857061 | Msa0833760:CDS | 45.0% | |
| TGTCATTGAGCTCACCATCT+TGG | - | chr5_4:6857059-6857078 | None:intergenic | 45.0% | |
| !!! | TTAAATATGAAATTTTTATT+TGG | + | chr5_4:6854933-6854952 | Msa0833760:intron | 5.0% |
| ATGAGTACTCCAACGGCGAA+AGG | + | chr5_4:6854346-6854365 | Msa0833760:CDS | 50.0% | |
| TCGCGAAATGCTTTCACGTG+AGG | + | chr5_4:6854633-6854652 | Msa0833760:CDS | 50.0% | |
| CGCGAAATGCTTTCACGTGA+GGG | + | chr5_4:6854634-6854653 | Msa0833760:CDS | 50.0% | |
| CGCAGAAACCTTGACGTCAA+AGG | - | chr5_4:6854783-6854802 | None:intergenic | 50.0% | |
| GCCTGCAAGGTACATCTTCA+TGG | + | chr5_4:6855523-6855542 | Msa0833760:CDS | 50.0% | |
| TGATGAGTGATCAAGGCCCA+TGG | + | chr5_4:6856293-6856312 | Msa0833760:CDS | 50.0% | |
| CATGCAGACAACGGAAGAGA+TGG | + | chr5_4:6856641-6856660 | Msa0833760:intron | 50.0% | |
| CAGACAACGGAAGAGATGGA+TGG | + | chr5_4:6856645-6856664 | Msa0833760:intron | 50.0% | |
| TGCGTGCGAACACAACAATG+TGG | + | chr5_4:6856668-6856687 | Msa0833760:CDS | 50.0% | |
| TGGCACTTGAGGAGACAACA+AGG | + | chr5_4:6856832-6856851 | Msa0833760:CDS | 50.0% | |
| GGCACTTGAGGAGACAACAA+GGG | + | chr5_4:6856833-6856852 | Msa0833760:CDS | 50.0% | |
| GAGACAACAAGGGCTAGAAC+AGG | + | chr5_4:6856843-6856862 | Msa0833760:CDS | 50.0% | |
| CTGTCTTCGCCTTTCGCCGT+TGG | - | chr5_4:6854358-6854377 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6854258 | 6857475 | 6854258 | ID=Msa0833760;Name=Msa0833760 |
| chr5_4 | mRNA | 6854258 | 6857475 | 6854258 | ID=Msa0833760-mRNA-1;Parent=Msa0833760;Name=Msa0833760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=88|0.8|0.90|1|1|1|11|300|462 |
| chr5_4 | exon | 6854258 | 6854698 | 6854258 | ID=Msa0833760-mRNA-1:exon:3015;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6854794 | 6854893 | 6854794 | ID=Msa0833760-mRNA-1:exon:3016;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6855147 | 6855413 | 6855147 | ID=Msa0833760-mRNA-1:exon:3017;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6855503 | 6855580 | 6855503 | ID=Msa0833760-mRNA-1:exon:3018;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6855799 | 6855900 | 6855799 | ID=Msa0833760-mRNA-1:exon:3019;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6855991 | 6856079 | 6855991 | ID=Msa0833760-mRNA-1:exon:3020;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6856237 | 6856345 | 6856237 | ID=Msa0833760-mRNA-1:exon:3021;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6856648 | 6856719 | 6856648 | ID=Msa0833760-mRNA-1:exon:3022;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6856795 | 6856932 | 6856795 | ID=Msa0833760-mRNA-1:exon:3023;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6857019 | 6857063 | 6857019 | ID=Msa0833760-mRNA-1:exon:3024;Parent=Msa0833760-mRNA-1 |
| chr5_4 | exon | 6857140 | 6857475 | 6857140 | ID=Msa0833760-mRNA-1:exon:3025;Parent=Msa0833760-mRNA-1 |
| chr5_4 | five_prime_UTR | 6854258 | 6854345 | 6854258 | ID=Msa0833760-mRNA-1:five_prime_utr;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6854346 | 6854698 | 6854346 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6854794 | 6854893 | 6854794 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6855147 | 6855413 | 6855147 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6855503 | 6855580 | 6855503 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6855799 | 6855900 | 6855799 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6855991 | 6856079 | 6855991 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6856237 | 6856345 | 6856237 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6856648 | 6856719 | 6856648 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6856795 | 6856932 | 6856795 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6857019 | 6857063 | 6857019 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | CDS | 6857140 | 6857175 | 6857140 | ID=Msa0833760-mRNA-1:cds;Parent=Msa0833760-mRNA-1 |
| chr5_4 | three_prime_UTR | 6857176 | 6857475 | 6857176 | ID=Msa0833760-mRNA-1:three_prime_utr;Parent=Msa0833760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
