AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669760 MtrunA17_Chr4g0008801 98.788 165 2 0 1 165 1 165 2.75e-119 333
Msa0669760 MtrunA17_Chr7g0240701 70.701 157 46 0 1 157 1 157 1.95e-83 243
Msa0669760 MtrunA17_Chr4g0032261 65.409 159 55 0 1 159 1 159 4.91e-75 221
Msa0669760 MtrunA17_Chr5g0433951 55.758 165 73 0 1 165 1 165 5.60e-62 188
Msa0669760 MtrunA17_Chr2g0294421 47.500 160 84 0 1 160 1 160 1.36e-48 154
Msa0669760 MtrunA17_Chr5g0427291 37.654 162 85 5 9 157 12 170 1.37e-21 86.3
Msa0669760 MtrunA17_Chr1g0194801 33.742 163 90 6 3 157 4 156 1.00e-17 75.5
Msa0669760 MtrunA17_Chr1g0192651 32.716 162 99 4 5 164 9 162 6.66e-17 73.6
Msa0669760 MtrunA17_Chr4g0001641 48.387 62 32 0 100 161 8 69 1.13e-15 67.8
Msa0669760 MtrunA17_Chr6g0464761 73.171 41 11 0 95 135 12 52 1.15e-15 68.2
Msa0669760 MtrunA17_Chr1g0176321 30.120 166 95 4 9 157 7 168 3.38e-15 69.3
Msa0669760 MtrunA17_Chr1g0176311 29.375 160 98 3 9 157 26 181 2.10e-14 67.4
Msa0669760 MtrunA17_Chr2g0323291 26.994 163 109 4 2 157 22 181 1.87e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669760 AT3G53990.1 75.472 159 39 0 1 159 1 159 2.43e-88 255
Msa0669760 AT3G03270.2 60.377 159 63 0 1 159 1 159 4.56e-63 191
Msa0669760 AT3G17020.1 50.000 154 76 1 5 157 7 160 1.12e-54 170
Msa0669760 AT3G53990.2 74.490 98 25 0 1 98 1 98 2.08e-47 150
Msa0669760 AT3G03270.1 57.037 135 58 0 1 135 1 135 7.60e-47 151
Msa0669760 AT3G17020.2 47.253 91 47 1 5 94 7 97 6.84e-25 93.2
Msa0669760 AT1G09740.2 32.530 166 96 3 9 164 12 171 4.20e-20 82.4
Msa0669760 AT1G09740.1 32.530 166 96 3 9 164 12 171 4.20e-20 82.4
Msa0669760 AT3G62550.1 33.939 165 92 4 3 160 5 159 1.59e-18 78.2
Msa0669760 AT3G58450.1 30.682 176 93 5 9 165 34 199 6.65e-18 77.4
Msa0669760 AT3G58450.2 30.233 172 92 5 9 165 34 192 2.08e-17 75.9
Msa0669760 AT1G68300.1 31.169 154 99 3 5 157 10 157 1.60e-15 70.1
Msa0669760 AT3G11930.2 30.247 162 95 3 9 157 37 193 2.33e-15 70.5
Msa0669760 AT3G11930.1 30.435 161 95 3 9 157 37 192 6.86e-15 69.3
Msa0669760 AT3G11930.4 30.061 163 95 3 9 157 37 194 1.00e-14 68.9
Msa0669760 AT1G11360.2 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669760 AT1G11360.1 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669760 AT1G11360.4 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669760 AT1G11360.3 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669760 AT5G54430.2 31.333 150 86 5 5 144 48 190 4.80e-11 59.7
Msa0669760 AT5G54430.5 31.333 150 86 5 5 144 48 190 4.80e-11 59.7
Msa0669760 AT5G54430.1 31.333 150 86 5 5 144 48 190 4.90e-11 59.7
Msa0669760 AT5G54430.4 31.333 150 86 5 5 144 48 190 4.90e-11 59.7
Msa0669760 AT5G54430.3 31.333 150 86 5 5 144 48 190 5.54e-11 59.7
Msa0669760 AT5G54430.6 31.333 150 86 5 5 144 48 190 5.54e-11 59.7

Find 48 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTTCTTGCATTGTATT+TGG 0.126929 4_4:-11618780 Msa0669760:three_prime_UTR
ATTGGATAAGTAATAAATTT+TGG 0.148958 4_4:+11618646 None:intergenic
CTGTTTCTTGCATTGTATTT+GGG 0.239381 4_4:-11618779 Msa0669760:three_prime_UTR
AGATGAATAGCATTTAAATT+TGG 0.260690 4_4:-11618810 Msa0669760:three_prime_UTR
AGCATGTGAAACTAATAAAT+TGG 0.262668 4_4:+11618628 None:intergenic
GATTATAAATTCCGACTATC+TGG 0.299506 4_4:-11618723 Msa0669760:three_prime_UTR
CAGAGCATTCTTGCTGCTCT+TGG 0.307367 4_4:+11621078 None:intergenic
GAAGCTGGATTCTCTTGTTA+TGG 0.310746 4_4:-11620135 Msa0669760:CDS
GGGGATCATATCTATACTTT+TGG 0.313679 4_4:+11621365 None:intergenic
TAGAACTATTGGTGTGGCTT+TGG 0.330939 4_4:-11621107 Msa0669760:CDS
TATTGTTACAAAAGTGTATT+GGG 0.331126 4_4:-11620198 Msa0669760:CDS
CTTGAGAATTTAGCTGATAA+AGG 0.345536 4_4:-11621046 Msa0669760:CDS
AAGCTGGATTCTCTTGTTAT+GGG 0.360643 4_4:-11620134 Msa0669760:CDS
GCAGCAAGAATGCTCTGAAA+TGG 0.370068 4_4:-11621072 Msa0669760:CDS
TCTCATGAACAGGATATTAC+TGG 0.374010 4_4:-11618916 Msa0669760:intron
ATTCTCTTGTTATGGGTAGC+AGG 0.383547 4_4:-11620127 Msa0669760:CDS
CCATACTTCTTCATTATCTC+TGG 0.389368 4_4:+11620386 None:intergenic
ATGGCAAAAGATAGAACTAT+TGG 0.392250 4_4:-11621118 Msa0669760:CDS
GTACTTACGAGAACCATCTT+TGG 0.412789 4_4:+11620958 None:intergenic
ATGAAGCTCGTAATCAGTTA+TGG 0.420885 4_4:-11620982 Msa0669760:CDS
TTCTCTTGTTATGGGTAGCA+GGG 0.424515 4_4:-11620126 Msa0669760:CDS
ATATTGTTACAAAAGTGTAT+TGG 0.434652 4_4:-11620199 Msa0669760:CDS
ATTGTGCCATAAATTATTCA+AGG 0.435758 4_4:-11618543 Msa0669760:three_prime_UTR
CCAGAGATAATGAAGAAGTA+TGG 0.442632 4_4:-11620386 Msa0669760:CDS
TGGTGTTCAGATTGATATTG+AGG 0.444872 4_4:-11620366 Msa0669760:CDS
CAGCAAGAATGCTCTGAAAT+GGG 0.466495 4_4:-11621071 Msa0669760:CDS
TGAAGCTCGTAATCAGTTAT+GGG 0.466658 4_4:-11620981 Msa0669760:CDS
TGATGCAAGAGAGAAACTTA+TGG 0.472999 4_4:-11620174 Msa0669760:CDS
TGCTGTTGAAGATCTGAAGC+TGG 0.501707 4_4:-11620150 Msa0669760:CDS
GGTTCTCTGAATTCTTTCAA+AGG 0.511562 4_4:+11620407 None:intergenic
AGTCACAGGGCAAGGAGCAT+TGG 0.516295 4_4:+11618869 None:intergenic
TGAATAACAATCTATGTGTC+TGG 0.522408 4_4:+11618567 None:intergenic
TTATCCTTGACAATAGTCAC+AGG 0.547714 4_4:+11618855 None:intergenic
GGGGTCTCAGCACAATTCAA+AGG 0.550843 4_4:-11620106 Msa0669760:intron
CTCATGAACAGGATATTACT+GGG 0.555261 4_4:-11618915 Msa0669760:intron
AAGAAGAAACAGCTTTGACA+AGG 0.558354 4_4:+11621194 None:intergenic
TTGACAATAGTCACAGGGCA+AGG 0.568600 4_4:+11618861 None:intergenic
AATCAGTTATGGGCCAAAGA+TGG 0.569005 4_4:-11620971 Msa0669760:CDS
AATAAAGTTAACCAGATAGT+CGG 0.578098 4_4:+11618712 None:intergenic
CAAGAGAATCATGGCTGATG+TGG 0.581024 4_4:+11621005 None:intergenic
GAGCTTCATCAAGAGAATCA+TGG 0.583756 4_4:+11620996 None:intergenic
TCTCTTGTTATGGGTAGCAG+GGG 0.589338 4_4:-11620125 Msa0669760:CDS
AGAAGAAACAGCTTTGACAA+GGG 0.591104 4_4:+11621195 None:intergenic
TTGCCCTGTGACTATTGTCA+AGG 0.603225 4_4:-11618859 Msa0669760:CDS
ATTGTTACAAAAGTGTATTG+GGG 0.627971 4_4:-11620197 Msa0669760:CDS
AAAAGATAGAACTATTGGTG+TGG 0.655375 4_4:-11621113 Msa0669760:CDS
CGAGGATAGAGATTGAGTCA+CGG 0.661707 4_4:+11621276 None:intergenic
TATCCTTGACAATAGTCACA+GGG 0.701905 4_4:+11618856 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTGATTATTGATTTTT+AGG - chr4_4:11619658-11619677 Msa0669760:intron 10.0%
!!! TATACTTTTTTTTTTTTGAG+GGG + chr4_4:11618540-11618559 None:intergenic 15.0%
!!! CTATACTTTTTTTTTTTTGA+GGG + chr4_4:11618541-11618560 None:intergenic 15.0%
!!! TCTATACTTTTTTTTTTTTG+AGG + chr4_4:11618542-11618561 None:intergenic 15.0%
!! AAAAAATGAAGAAAAATGAA+TGG + chr4_4:11618950-11618969 None:intergenic 15.0%
!! CAGAAAAAATATAAAAACAT+AGG + chr4_4:11618990-11619009 None:intergenic 15.0%
!!! AACATACTTTATTTATCTTT+TGG - chr4_4:11619156-11619175 Msa0669760:intron 15.0%
!! TTTGATTCATACATTTATAT+CGG - chr4_4:11619276-11619295 Msa0669760:intron 15.0%
!!! AAATATTTTGATGTATTCAT+AGG + chr4_4:11620905-11620924 None:intergenic 15.0%
!!! ATTGGATAAGTAATAAATTT+TGG + chr4_4:11621240-11621259 None:intergenic 15.0%
!! AAAAATCCTTGAATAATTTA+TGG + chr4_4:11621349-11621368 None:intergenic 15.0%
!!! AAAAATTTTACACGCTTTTT+TGG + chr4_4:11618633-11618652 None:intergenic 20.0%
!! TCAAACTAACAATATAAGAT+CGG + chr4_4:11619015-11619034 None:intergenic 20.0%
!!! GATCAAACTTTATTTATCTT+TGG - chr4_4:11619067-11619086 Msa0669760:intron 20.0%
!!! GACTCTAATAATCTAAAATT+CGG + chr4_4:11619094-11619113 None:intergenic 20.0%
!!! ATATTGTTACAAAAGTGTAT+TGG - chr4_4:11619684-11619703 Msa0669760:intron 20.0%
!!! TATTGTTACAAAAGTGTATT+GGG - chr4_4:11619685-11619704 Msa0669760:intron 20.0%
!! AACACAAGATTAAGAAATTA+GGG + chr4_4:11619813-11619832 None:intergenic 20.0%
!! AAACACAAGATTAAGAAATT+AGG + chr4_4:11619814-11619833 None:intergenic 20.0%
!!! AATCTTGTGTTTAATGTTTT+TGG - chr4_4:11619822-11619841 Msa0669760:intron 20.0%
!!! ATCTTGTGTTTAATGTTTTT+GGG - chr4_4:11619823-11619842 Msa0669760:intron 20.0%
!! AGAAAATTAATTAGATCATG+TGG - chr4_4:11619882-11619901 Msa0669760:intron 20.0%
!! GAAAATTAATTAGATCATGT+GGG - chr4_4:11619883-11619902 Msa0669760:intron 20.0%
!! AAAATTAATTAGATCATGTG+GGG - chr4_4:11619884-11619903 Msa0669760:intron 20.0%
!!! TTTTAGTGACATGATATAAT+TGG - chr4_4:11619997-11620016 Msa0669760:intron 20.0%
!!! TTTGTAGCTTTACAAAATAA+GGG - chr4_4:11620140-11620159 Msa0669760:CDS 20.0%
!! ATTTAGATAGAATTGAGATT+GGG + chr4_4:11620440-11620459 None:intergenic 20.0%
!! TATTTAGATAGAATTGAGAT+TGG + chr4_4:11620441-11620460 None:intergenic 20.0%
!!! TTCTCAAATCAATGTTATTT+TGG - chr4_4:11620497-11620516 Msa0669760:intron 20.0%
!! AGATGAATAGCATTTAAATT+TGG - chr4_4:11621073-11621092 Msa0669760:CDS 20.0%
!!! AAGCATTTTTTTTTGAAGAA+TGG + chr4_4:11621289-11621308 None:intergenic 20.0%
!!! TCTGCATTTTAATTTAGACA+AGG - chr4_4:11619604-11619623 Msa0669760:intron 25.0%
!! ATTGTTACAAAAGTGTATTG+GGG - chr4_4:11619686-11619705 Msa0669760:intron 25.0%
! AATTCTATAAACTTAAGCTC+TGG + chr4_4:11619943-11619962 None:intergenic 25.0%
!! GTTTGTAGCTTTACAAAATA+AGG - chr4_4:11620139-11620158 Msa0669760:CDS 25.0%
! CTACTAGAAACTACAATATA+CGG + chr4_4:11620334-11620353 None:intergenic 25.0%
! ACTATAATCAATTATAGGAC+TGG + chr4_4:11620417-11620436 None:intergenic 25.0%
! TTGGGACTATAATCAATTAT+AGG + chr4_4:11620422-11620441 None:intergenic 25.0%
!!! AATATCTATCTAAGTACTGA+AGG - chr4_4:11620842-11620861 Msa0669760:intron 25.0%
!!! CATCAAAATATTTGTTGTGA+TGG - chr4_4:11620912-11620931 Msa0669760:intron 25.0%
! AATAAAGTTAACCAGATAGT+CGG + chr4_4:11621174-11621193 None:intergenic 25.0%
! AGCATGTGAAACTAATAAAT+TGG + chr4_4:11621258-11621277 None:intergenic 25.0%
! ATTGTGCCATAAATTATTCA+AGG - chr4_4:11621340-11621359 Msa0669760:five_prime_UTR 25.0%
TCATCACTCACAAACAAAAA+TGG - chr4_4:11618746-11618765 Msa0669760:three_prime_UTR 30.0%
ATGGCAAAAGATAGAACTAT+TGG - chr4_4:11618765-11618784 Msa0669760:three_prime_UTR 30.0%
AAAAGATAGAACTATTGGTG+TGG - chr4_4:11618770-11618789 Msa0669760:three_prime_UTR 30.0%
CTTGAGAATTTAGCTGATAA+AGG - chr4_4:11618837-11618856 Msa0669760:CDS 30.0%
!!! AATTAGACTGGATTTTGACT+CGG - chr4_4:11619122-11619141 Msa0669760:intron 30.0%
!! TTCGATTTTGATACGATATC+TGG - chr4_4:11619309-11619328 Msa0669760:intron 30.0%
!!! ACATGACAGGATATTGATTT+TGG - chr4_4:11619382-11619401 Msa0669760:intron 30.0%
!!! CAGGATATTGATTTTGGTTT+TGG - chr4_4:11619388-11619407 Msa0669760:intron 30.0%
!!! ATTTGCTTGACACTTTTTCA+AGG - chr4_4:11619546-11619565 Msa0669760:intron 30.0%
ATAGTGAGATCGAATAATCA+CGG + chr4_4:11620173-11620192 None:intergenic 30.0%
ACTATACAAACATGTACGTT+TGG - chr4_4:11620188-11620207 Msa0669760:CDS 30.0%
! CCAACGTAAATGTGATTTTT+GGG + chr4_4:11620222-11620241 None:intergenic 30.0%
! ACCAACGTAAATGTGATTTT+TGG + chr4_4:11620223-11620242 None:intergenic 30.0%
! CAAATCAAAATAACTTGTGC+CGG + chr4_4:11620257-11620276 None:intergenic 30.0%
! TGATTTTATGTCACTGCAAA+AGG + chr4_4:11620476-11620495 None:intergenic 30.0%
ACTTTGTTGAATTGAAAGTG+TGG - chr4_4:11620530-11620549 Msa0669760:intron 30.0%
GATTCTTGTAAAACTGATCT+TGG + chr4_4:11620693-11620712 None:intergenic 30.0%
! TATTTGACGATTTAGTTCAG+CGG + chr4_4:11620742-11620761 None:intergenic 30.0%
! GTCAAATAATCTGATGATGA+GGG - chr4_4:11620754-11620773 Msa0669760:intron 30.0%
GATTAAGATCTTGTAGTGAA+AGG + chr4_4:11620883-11620902 None:intergenic 30.0%
AAAATTTGAGTCTCATGAAC+AGG - chr4_4:11620957-11620976 Msa0669760:intron 30.0%
! TCTGTTTCTTGCATTGTATT+TGG - chr4_4:11621103-11621122 Msa0669760:CDS 30.0%
! CTGTTTCTTGCATTGTATTT+GGG - chr4_4:11621104-11621123 Msa0669760:CDS 30.0%
GATTATAAATTCCGACTATC+TGG - chr4_4:11621160-11621179 Msa0669760:five_prime_UTR 30.0%
TGAATAACAATCTATGTGTC+TGG + chr4_4:11621319-11621338 None:intergenic 30.0%
! GGGGATCATATCTATACTTT+TGG + chr4_4:11618521-11618540 None:intergenic 35.0%
! AGAAGAAACAGCTTTGACAA+GGG + chr4_4:11618691-11618710 None:intergenic 35.0%
! AAGAAGAAACAGCTTTGACA+AGG + chr4_4:11618692-11618711 None:intergenic 35.0%
ATGAAGCTCGTAATCAGTTA+TGG - chr4_4:11618901-11618920 Msa0669760:CDS 35.0%
TGAAGCTCGTAATCAGTTAT+GGG - chr4_4:11618902-11618921 Msa0669760:CDS 35.0%
!! TTCTTTTTGTTGTCACTCTC+CGG + chr4_4:11619219-11619238 None:intergenic 35.0%
ATAATCAAGAGAACATGCAC+TGG + chr4_4:11619350-11619369 None:intergenic 35.0%
GGTTCTCTGAATTCTTTCAA+AGG + chr4_4:11619479-11619498 None:intergenic 35.0%
CCATACTTCTTCATTATCTC+TGG + chr4_4:11619500-11619519 None:intergenic 35.0%
CCAGAGATAATGAAGAAGTA+TGG - chr4_4:11619497-11619516 Msa0669760:intron 35.0%
TGGTGTTCAGATTGATATTG+AGG - chr4_4:11619517-11619536 Msa0669760:intron 35.0%
!!! CACTTTTTCAAGGCAAAAAG+AGG - chr4_4:11619556-11619575 Msa0669760:intron 35.0%
TGATGCAAGAGAGAAACTTA+TGG - chr4_4:11619709-11619728 Msa0669760:intron 35.0%
! AAGCTGGATTCTCTTGTTAT+GGG - chr4_4:11619749-11619768 Msa0669760:intron 35.0%
!!! GTTTGTTTTGGAGTGTAAGT+TGG - chr4_4:11619906-11619925 Msa0669760:intron 35.0%
CGGTGAGATTGACAAAATTA+CGG - chr4_4:11620051-11620070 Msa0669760:intron 35.0%
TGAGATTGACAAAATTACGG+TGG - chr4_4:11620054-11620073 Msa0669760:intron 35.0%
GAGATTGACAAAATTACGGT+GGG - chr4_4:11620055-11620074 Msa0669760:intron 35.0%
! GTAGCTTTACAAAATAAGGG+TGG - chr4_4:11620143-11620162 Msa0669760:CDS 35.0%
!!! TAAATGTGATTTTTGGGTGG+TGG + chr4_4:11620216-11620235 None:intergenic 35.0%
!! ACGTAAATGTGATTTTTGGG+TGG + chr4_4:11620219-11620238 None:intergenic 35.0%
CCCAAAAATCACATTTACGT+TGG - chr4_4:11620219-11620238 Msa0669760:intron 35.0%
!!! CGGCACAAGTTATTTTGATT+TGG - chr4_4:11620255-11620274 Msa0669760:intron 35.0%
TTCATAAGTTCACAGCAGAA+TGG + chr4_4:11620310-11620329 None:intergenic 35.0%
!! TGAATTGAAAGTGTGGCTTT+TGG - chr4_4:11620537-11620556 Msa0669760:intron 35.0%
! CGTCAAATAATCTGATGATG+AGG - chr4_4:11620753-11620772 Msa0669760:intron 35.0%
!! CATATAGAAGAGCGTCTATT+TGG - chr4_4:11620793-11620812 Msa0669760:intron 35.0%
TCTCATGAACAGGATATTAC+TGG - chr4_4:11620967-11620986 Msa0669760:CDS 35.0%
CTCATGAACAGGATATTACT+GGG - chr4_4:11620968-11620987 Msa0669760:CDS 35.0%
TATCCTTGACAATAGTCACA+GGG + chr4_4:11621030-11621049 None:intergenic 35.0%
TTATCCTTGACAATAGTCAC+AGG + chr4_4:11621031-11621050 None:intergenic 35.0%
!!! TTTTACACGCTTTTTTGGCG+AGG + chr4_4:11618628-11618647 None:intergenic 40.0%
TAGAACTATTGGTGTGGCTT+TGG - chr4_4:11618776-11618795 Msa0669760:three_prime_UTR 40.0%
!! CAGCAAGAATGCTCTGAAAT+GGG - chr4_4:11618812-11618831 Msa0669760:three_prime_UTR 40.0%
GAGCTTCATCAAGAGAATCA+TGG + chr4_4:11618890-11618909 None:intergenic 40.0%
AATCAGTTATGGGCCAAAGA+TGG - chr4_4:11618912-11618931 Msa0669760:intron 40.0%
GTACTTACGAGAACCATCTT+TGG + chr4_4:11618928-11618947 None:intergenic 40.0%
AGTCTCGAGTCTAATTAGAC+TGG - chr4_4:11619110-11619129 Msa0669760:intron 40.0%
TCAGTATGACATGACATGAC+AGG - chr4_4:11619369-11619388 Msa0669760:intron 40.0%
GAAGCTGGATTCTCTTGTTA+TGG - chr4_4:11619748-11619767 Msa0669760:intron 40.0%
! ATTCTCTTGTTATGGGTAGC+AGG - chr4_4:11619756-11619775 Msa0669760:intron 40.0%
! TTCTCTTGTTATGGGTAGCA+GGG - chr4_4:11619757-11619776 Msa0669760:intron 40.0%
!! AGATCATGTGGGGTTTGTTT+TGG - chr4_4:11619894-11619913 Msa0669760:intron 40.0%
! ACATTTACGTTGGTGAAACG+TGG - chr4_4:11620229-11620248 Msa0669760:intron 40.0%
GTTTGTTTCCACTGCAGAAT+GGG + chr4_4:11620371-11620390 None:intergenic 40.0%
TGTTTGTTTCCACTGCAGAA+TGG + chr4_4:11620372-11620391 None:intergenic 40.0%
AGACGCTCTTCTATATGCAT+CGG + chr4_4:11620790-11620809 None:intergenic 40.0%
CGAGGATAGAGATTGAGTCA+CGG + chr4_4:11618610-11618629 None:intergenic 45.0%
!! GCAGCAAGAATGCTCTGAAA+TGG - chr4_4:11618811-11618830 Msa0669760:three_prime_UTR 45.0%
CAAGAGAATCATGGCTGATG+TGG + chr4_4:11618881-11618900 None:intergenic 45.0%
! TTTATCTTTTGGCCGAGCTC+TGG - chr4_4:11619167-11619186 Msa0669760:intron 45.0%
TCTCCGGTTCTTAGAGAAAC+CGG + chr4_4:11619203-11619222 None:intergenic 45.0%
TACGATATCTGGCCAAACTC+TGG - chr4_4:11619320-11619339 Msa0669760:intron 45.0%
! TGCACTGGTAATCCAGAGTT+TGG + chr4_4:11619335-11619354 None:intergenic 45.0%
! TGCTGTTGAAGATCTGAAGC+TGG - chr4_4:11619733-11619752 Msa0669760:intron 45.0%
! TCTCTTGTTATGGGTAGCAG+GGG - chr4_4:11619758-11619777 Msa0669760:intron 45.0%
ATGCTCAAGTCGCTCATGTT+TGG - chr4_4:11620023-11620042 Msa0669760:intron 45.0%
ACAATGATAGATGCGCGTCT+AGG - chr4_4:11620283-11620302 Msa0669760:intron 45.0%
CACTGCAGAATGGGTATAAG+AGG + chr4_4:11620362-11620381 None:intergenic 45.0%
CTCTTATACCCATTCTGCAG+TGG - chr4_4:11620360-11620379 Msa0669760:CDS 45.0%
TTGACAATAGTCACAGGGCA+AGG + chr4_4:11621025-11621044 None:intergenic 45.0%
TTGCCCTGTGACTATTGTCA+AGG - chr4_4:11621024-11621043 Msa0669760:CDS 45.0%
!!! TAATTTATGTTTTTTTTTTT+TGG - chr4_4:11619437-11619456 Msa0669760:intron 5.0%
! CAGAGCATTCTTGCTGCTCT+TGG + chr4_4:11618808-11618827 None:intergenic 50.0%
GGTCCTGATAATCCAGAGCT+CGG + chr4_4:11619182-11619201 None:intergenic 50.0%
!! GAGCTCTGGATTATCAGGAC+CGG - chr4_4:11619181-11619200 Msa0669760:intron 50.0%
! GGACCGGTTTCTCTAAGAAC+CGG - chr4_4:11619197-11619216 Msa0669760:intron 50.0%
GGGGTCTCAGCACAATTCAA+AGG - chr4_4:11619777-11619796 Msa0669760:intron 50.0%
GTCGCTCATGTTTGGATGAG+CGG - chr4_4:11620031-11620050 Msa0669760:intron 50.0%
!!! ACGGTGGGTTAGCACGATTT+TGG - chr4_4:11620070-11620089 Msa0669760:intron 50.0%
! ACGTTGGTGAAACGTGGTTC+CGG - chr4_4:11620235-11620254 Msa0669760:intron 50.0%
!! TGGCCGAGCTCTGGATTATC+AGG - chr4_4:11619176-11619195 Msa0669760:intron 55.0%
! AGTCACAGGGCAAGGAGCAT+TGG + chr4_4:11621017-11621036 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 11618484 11621421 11618484 ID=Msa0669760;Name=Msa0669760
chr4_4 mRNA 11618484 11621421 11618484 ID=Msa0669760-mRNA-1;Parent=Msa0669760;Name=Msa0669760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=281|1|1|1|0.75|0.6|5|319|165
chr4_4 exon 11618484 11618602 11618484 ID=Msa0669760-mRNA-1:exon:3536;Parent=Msa0669760-mRNA-1
chr4_4 exon 11618633 11618926 11618633 ID=Msa0669760-mRNA-1:exon:3535;Parent=Msa0669760-mRNA-1
chr4_4 exon 11620107 11620225 11620107 ID=Msa0669760-mRNA-1:exon:3534;Parent=Msa0669760-mRNA-1
chr4_4 exon 11620328 11620437 11620328 ID=Msa0669760-mRNA-1:exon:3533;Parent=Msa0669760-mRNA-1
chr4_4 exon 11620966 11621421 11620966 ID=Msa0669760-mRNA-1:exon:3532;Parent=Msa0669760-mRNA-1
chr4_4 five_prime_UTR 11621141 11621421 11621141 ID=Msa0669760-mRNA-1:five_prime_utr;Parent=Msa0669760-mRNA-1
chr4_4 CDS 11620966 11621140 11620966 ID=Msa0669760-mRNA-1:cds;Parent=Msa0669760-mRNA-1
chr4_4 CDS 11620328 11620437 11620328 ID=Msa0669760-mRNA-1:cds;Parent=Msa0669760-mRNA-1
chr4_4 CDS 11620107 11620225 11620107 ID=Msa0669760-mRNA-1:cds;Parent=Msa0669760-mRNA-1
chr4_4 CDS 11618833 11618926 11618833 ID=Msa0669760-mRNA-1:cds;Parent=Msa0669760-mRNA-1
chr4_4 three_prime_UTR 11618633 11618832 11618633 ID=Msa0669760-mRNA-1:three_prime_utr;Parent=Msa0669760-mRNA-1
chr4_4 three_prime_UTR 11618484 11618602 11618484 ID=Msa0669760-mRNA-1:three_prime_utr;Parent=Msa0669760-mRNA-1
Gene Sequence

>Msa0669760

ATGGCAAAAGATAGAACTATTGGTGTGGCTTTGGATTTCTCCAAGAGCAGCAAGAATGCTCTGAAATGGGCACTTGAGAATTTAGCTGATAAAGGTGACAACATTTACATCATCCACATCAGCCATGATTCTCTTGATGAAGCTCGTAATCAGTTATGGGCCAAAGATGGTTCTCCTCTTATTCCTTTGAAAGAATTCAGAGAACCAGAGATAATGAAGAAGTATGGTGTTCAGATTGATATTGAGGTTCTTGATTTGCTTGACACTTTTTCAAGGCAAAAAGAGGTGAATATTGTTACAAAAGTGTATTGGGGTGATGCAAGAGAGAAACTTATGGATGCTGTTGAAGATCTGAAGCTGGATTCTCTTGTTATGGGTAGCAGGGGTCTCAGCACAATTCAAAGGATATTACTGGGAAGTGTAAGCAATTTTGTGATGACCAATGCTCCTTGCCCTGTGACTATTGTCAAGGATAATAGCAGCAGCAGCAGCAAGTAA

Protein sequence

>Msa0669760

MAKDRTIGVALDFSKSSKNALKWALENLADKGDNIYIIHISHDSLDEARNQLWAKDGSPLIPLKEFREPEIMKKYGVQIDIEVLDLLDTFSRQKEVNIVTKVYWGDAREKLMDAVEDLKLDSLVMGSRGLSTIQRILLGSVSNFVMTNAPCPVTIVKDNSSSSSK*