AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0291520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291520 MtrunA17_Chr0c02g0489661 100.000 235 0 0 1 235 1 235 7.48e-175 479
Msa0291520 MtrunA17_Chr8g0371571 38.767 227 134 3 4 228 2 225 8.69e-52 168
Msa0291520 MtrunA17_Chr2g0308541 38.961 231 136 4 6 231 9 239 9.79e-52 168
Msa0291520 MtrunA17_Chr7g0243311 36.752 234 141 4 5 231 4 237 4.81e-49 161
Msa0291520 MtrunA17_Chr8g0360781 38.961 231 136 4 6 231 9 239 4.06e-48 159
Msa0291520 MtrunA17_Chr1g0210811 35.526 228 142 2 4 228 6 231 1.45e-47 157
Msa0291520 MtrunA17_Chr5g0401801 41.270 189 109 2 5 191 4 192 1.04e-46 154
Msa0291520 MtrunA17_Chr2g0283841 37.445 227 137 3 4 228 2 225 1.85e-46 154
Msa0291520 MtrunA17_Chr1g0155371 35.111 225 141 3 1 222 1 223 1.41e-41 143
Msa0291520 MtrunA17_Chr6g0459741 36.612 183 116 0 6 188 8 190 3.43e-39 135
Msa0291520 MtrunA17_Chr4g0004521 31.336 217 130 5 20 222 7 218 2.11e-27 105
Msa0291520 MtrunA17_Chr4g0027841 27.897 233 156 7 9 234 91 318 3.71e-17 79.0
Msa0291520 MtrunA17_Chr6g0453891 28.571 189 123 4 32 214 136 318 7.02e-14 69.7
Msa0291520 MtrunA17_Chr3g0142511 32.692 104 67 2 122 222 30 133 3.45e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291520 AT1G16470.1 94.043 235 14 0 1 235 1 235 5.73e-164 452
Msa0291520 AT1G16470.2 94.043 235 14 0 1 235 1 235 5.73e-164 452
Msa0291520 AT1G79210.1 93.191 235 16 0 1 235 1 235 1.07e-162 449
Msa0291520 AT1G79210.2 93.191 235 16 0 1 235 1 235 1.07e-162 449
Msa0291520 AT1G79210.3 93.191 235 16 0 1 235 1 235 1.07e-162 449
Msa0291520 AT5G66140.1 39.035 228 133 4 4 228 2 226 3.97e-50 164
Msa0291520 AT3G51260.1 38.596 228 134 4 4 228 2 226 9.19e-49 160
Msa0291520 AT3G51260.2 39.623 212 123 3 4 213 2 210 1.66e-48 160
Msa0291520 AT1G53850.1 35.526 228 142 2 4 228 6 231 1.68e-47 157
Msa0291520 AT1G53850.2 35.526 228 142 2 4 228 6 231 1.68e-47 157
Msa0291520 AT3G14290.1 35.526 228 142 2 4 228 6 231 3.61e-47 156
Msa0291520 AT5G35590.1 37.229 231 140 4 6 231 9 239 3.87e-47 156
Msa0291520 AT3G22110.1 36.245 229 136 4 5 230 4 225 2.33e-46 154
Msa0291520 AT2G05840.1 35.931 231 143 4 6 231 9 239 1.97e-44 149
Msa0291520 AT5G42790.1 36.444 225 138 3 1 222 1 223 3.11e-42 145
Msa0291520 AT1G47250.1 34.034 238 152 3 1 235 1 236 1.77e-40 140
Msa0291520 AT2G05840.2 34.928 209 132 3 6 210 9 217 2.01e-38 133
Msa0291520 AT2G27020.1 32.710 214 143 1 6 218 8 221 3.17e-36 128
Msa0291520 AT2G05840.3 35.955 178 112 2 6 181 9 186 4.59e-35 124
Msa0291520 AT2G27020.2 32.710 214 143 1 6 218 110 323 5.52e-35 127
Msa0291520 AT4G15165.1 26.754 228 117 4 5 230 4 183 3.44e-23 93.6

Find 72 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGAAATTGATGATTATT+TGG 0.158426 2_3:-40128901 Msa0291520:CDS
GGAGTGTCCCTGCTTGTTGC+TGG 0.253157 2_3:-40130803 Msa0291520:CDS
GCTTTAACTGCTGTTGGTTC+TGG 0.266268 2_3:-40133971 Msa0291520:CDS
GGGTCCTGATTTCCGAGTTT+TGG 0.297847 2_3:-40132028 Msa0291520:CDS
CTGTATACAACACCTATATT+TGG 0.326037 2_3:+40132713 None:intergenic
CCCTTCCTTCAGTGTCAATA+TGG 0.330202 2_3:+40130282 None:intergenic
GATAGTGGTGTTAGGCCATT+TGG 0.346954 2_3:-40130824 Msa0291520:intron
GTTGCTGGGTTTGATGATAA+TGG 0.347033 2_3:-40130788 Msa0291520:CDS
TCTTTCTCTTTCTAATTCTC+AGG 0.350020 2_3:-40134215 Msa0291520:intron
GAAGAAACTGCCATCTATAT+TGG 0.351234 2_3:-40133186 Msa0291520:CDS
ATGCAGGAATTTACTCAGTC+TGG 0.352073 2_3:-40131523 Msa0291520:CDS
TTTGCCCTGATAGTGGTGTT+AGG 0.363096 2_3:-40130832 Msa0291520:intron
TGAATGTAGGGTTGTTTGTA+AGG 0.366695 2_3:-40134090 Msa0291520:intron
AACATTGAAATCGGCATCAT+TGG 0.369450 2_3:-40129703 Msa0291520:CDS
TTGTAGATACACTGATGATA+TGG 0.375486 2_3:-40130329 Msa0291520:intron
CGAACCAAAACTCGGAAATC+AGG 0.376290 2_3:+40132024 None:intergenic
CAAATATAGGTGTTGTATAC+AGG 0.377485 2_3:-40132712 Msa0291520:intron
GCAGTATCACCGATTGTATA+AGG 0.400018 2_3:-40131980 Msa0291520:intron
GCTGAAATTGATGATTATTT+GGG 0.402207 2_3:-40128900 Msa0291520:CDS
AGCGTAGATGTATGTAAGTC+AGG 0.402226 2_3:+40134283 None:intergenic
ATGAAATAAACACCAACTTC+GGG 0.412111 2_3:+40128835 None:intergenic
TTGGCATTTCCCAGGTTTGA+GGG 0.418418 2_3:-40129742 Msa0291520:intron
TTAAACAAGCTGGATTTGTA+TGG 0.418939 2_3:+40128681 None:intergenic
TAATGGACCACAACTATATC+AGG 0.419917 2_3:-40130771 Msa0291520:intron
TTGCTGTAGGTGGATCCATC+AGG 0.428961 2_3:-40130614 Msa0291520:intron
AGAAAGAGAAAGAGGAAGAA+TGG 0.432175 2_3:+40134231 None:intergenic
GAGTGTCCCTGCTTGTTGCT+GGG 0.436297 2_3:-40130802 Msa0291520:CDS
TTGGTTCTTGCAGCTGCAAA+TGG 0.438100 2_3:-40133227 Msa0291520:intron
TCCCTGTCACTCAACTTGTA+AGG 0.441365 2_3:-40131561 Msa0291520:CDS
GCTTCATCAACCAATATAGA+TGG 0.444983 2_3:+40133176 None:intergenic
TTAGAAAGAGAAAGAGAAAG+AGG 0.449290 2_3:+40134223 None:intergenic
CAGTTATTAACACCAAATAT+AGG 0.451124 2_3:-40132725 Msa0291520:CDS
TCTTGGAAAGCTTCTGCTAT+GGG 0.454997 2_3:-40130581 Msa0291520:CDS
TATCATATATTTAAACAAGC+TGG 0.460852 2_3:+40128671 None:intergenic
ACAAGTTGAGTGACAGGGAT+TGG 0.462122 2_3:+40131565 None:intergenic
TATGAAATAAACACCAACTT+CGG 0.469621 2_3:+40128834 None:intergenic
ATCACATCAAATCAAACAAT+GGG 0.470673 2_3:-40134061 Msa0291520:exon
TTCTTGGAAAGCTTCTGCTA+TGG 0.473689 2_3:-40130582 Msa0291520:CDS
TCCCTTACAAGTTGAGTGAC+AGG 0.479106 2_3:+40131559 None:intergenic
GAACATGCTTTAACTGCTGT+TGG 0.482096 2_3:-40133977 Msa0291520:CDS
CATCCTTGTGTTCCCGAAGT+TGG 0.487030 2_3:-40128847 Msa0291520:three_prime_UTR
AGTTTAATTGAATTTCAAGA+TGG 0.499567 2_3:-40128807 Msa0291520:three_prime_UTR
GTTGGCATTTCCCAGGTTTG+AGG 0.504319 2_3:-40129743 Msa0291520:intron
CTAAGACATTTCTTGAGAAG+AGG 0.508140 2_3:-40130541 Msa0291520:intron
CATCAAACCCAGCAACAAGC+AGG 0.525359 2_3:+40130795 None:intergenic
GGTTCTGGACAAACTTCTCT+CGG 0.526164 2_3:-40133956 Msa0291520:CDS
CAAACTTCTCTCGGTATCAA+AGG 0.527227 2_3:-40133947 Msa0291520:intron
TATGGTGTACCTTATACAAT+CGG 0.527859 2_3:+40131971 None:intergenic
GGAAGTTGCTGCTGTCATGC+AGG 0.531323 2_3:-40131539 Msa0291520:CDS
CATCACATCAAATCAAACAA+TGG 0.533853 2_3:-40134062 Msa0291520:exon
GTTTAATTGAATTTCAAGAT+GGG 0.536767 2_3:-40128806 Msa0291520:three_prime_UTR
AAATAATCATCAATTTCAGC+TGG 0.537679 2_3:+40128903 None:intergenic
CCCTGTCACTCAACTTGTAA+GGG 0.541679 2_3:-40131560 Msa0291520:CDS
TGCAGGAATTTACTCAGTCT+GGG 0.542143 2_3:-40131522 Msa0291520:intron
CCCTTACAAGTTGAGTGACA+GGG 0.551681 2_3:+40131560 None:intergenic
GCGAGTATTGTGTTGTGTTG+TGG 0.552759 2_3:+40134253 None:intergenic
GCCATATTGACACTGAAGGA+AGG 0.565690 2_3:-40130283 Msa0291520:CDS
ACAAGCAGGGACACTCCAAA+TGG 0.570540 2_3:+40130809 None:intergenic
CAACTTCGGGAACACAAGGA+TGG 0.577648 2_3:+40128848 None:intergenic
GCGTAGATGTATGTAAGTCA+GGG 0.591808 2_3:+40134284 None:intergenic
TGCCATACCTGATATAGTTG+TGG 0.596286 2_3:+40130764 None:intergenic
ACACCAACTTCGGGAACACA+AGG 0.600402 2_3:+40128844 None:intergenic
ATCAAACCCAGCAACAAGCA+GGG 0.606489 2_3:+40130796 None:intergenic
CCATATTGACACTGAAGGAA+GGG 0.609464 2_3:-40130282 Msa0291520:intron
CACAGCCATATTGACACTGA+AGG 0.611228 2_3:-40130287 Msa0291520:CDS
CTTGGAAAGCTTCTGCTATG+GGG 0.618178 2_3:-40130580 Msa0291520:CDS
ATCTGAACAAGCTTACCAGA+AGG 0.620962 2_3:+40134001 None:intergenic
TAAGTCAGGGAAGAATGAGT+AGG 0.625838 2_3:+40134297 None:intergenic
ATGAAGACTTGTGATGGCAC+TGG 0.627971 2_3:-40128776 Msa0291520:three_prime_UTR
AGATGGCAGTTTCTTCTCAG+TGG 0.633159 2_3:+40133193 None:intergenic
TGATGAATGAAGACTTGTGA+TGG 0.639717 2_3:-40128782 Msa0291520:three_prime_UTR
TCAGTGTCAATATGGCTGTG+TGG 0.671904 2_3:+40130290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAACTATATATATATT+CGG - chr2_3:40129717-40129736 Msa0291520:CDS 10.0%
!!! TTTTTTTGTAACTATATTTT+TGG - chr2_3:40129740-40129759 Msa0291520:intron 10.0%
!! AAATAAACAAAAATTAGATA+AGG + chr2_3:40129975-40129994 None:intergenic 10.0%
!!! TATCTAATTTTTGTTTATTT+TGG - chr2_3:40129975-40129994 Msa0291520:intron 10.0%
!!! TTTATTTTATTTTTTGTGAT+GGG + chr2_3:40131597-40131616 None:intergenic 10.0%
!!! TTTTATTTTATTTTTTGTGA+TGG + chr2_3:40131598-40131617 None:intergenic 10.0%
!! AATATTCAAATGATAATAAA+GGG + chr2_3:40132122-40132141 None:intergenic 10.0%
!! TAATATTCAAATGATAATAA+AGG + chr2_3:40132123-40132142 None:intergenic 10.0%
!!! TAAATATGATATTTTCATTA+AGG + chr2_3:40132766-40132785 None:intergenic 10.0%
!!! TATTTCAATGTATTAGTTTA+AGG - chr2_3:40129142-40129161 Msa0291520:intron 15.0%
!!! ATAAAATTTTGTTCTATCAA+TGG + chr2_3:40130106-40130125 None:intergenic 15.0%
!! AAAGAAAAAGAAATTATCTA+AGG + chr2_3:40131212-40131231 None:intergenic 15.0%
!!! ATAATTTCTTTTTCTTTTTC+TGG - chr2_3:40131215-40131234 Msa0291520:intron 15.0%
!!! TGACAATTTTATTTTCTTAT+AGG + chr2_3:40131711-40131730 None:intergenic 15.0%
!! ATATTCAAATGATAATAAAG+GGG + chr2_3:40132121-40132140 None:intergenic 15.0%
!! ATTACATTAATCTCTAATAA+TGG + chr2_3:40132551-40132570 None:intergenic 15.0%
!! TTTAATTGTTATAGTTGATT+AGG - chr2_3:40132782-40132801 Msa0291520:intron 15.0%
!!! AATTAAAAGGTATAAATTTG+AGG - chr2_3:40133479-40133498 Msa0291520:intron 15.0%
!! ATATATGTTGCATAATTTAA+AGG + chr2_3:40133783-40133802 None:intergenic 15.0%
!!! TATGCAACATATATTTTTAA+TGG - chr2_3:40133789-40133808 Msa0291520:intron 15.0%
!!! ATTAGAGTCTTAATATTTTT+GGG + chr2_3:40133872-40133891 None:intergenic 15.0%
!! AAACAAGAGAAAGTAATTAT+GGG + chr2_3:40128817-40128836 None:intergenic 20.0%
!!! AGTTTAAGGTACATAAAATA+TGG - chr2_3:40129156-40129175 Msa0291520:intron 20.0%
!!! GTTTAAGGTACATAAAATAT+GGG - chr2_3:40129157-40129176 Msa0291520:intron 20.0%
!!! GTGTTAATAACTGAATTTTT+TGG + chr2_3:40130254-40130273 None:intergenic 20.0%
!!! TATCTTTTGGTTTTCTATTA+TGG - chr2_3:40131347-40131366 Msa0291520:intron 20.0%
!! ATAACATAAACTTATATGCT+GGG + chr2_3:40131557-40131576 None:intergenic 20.0%
!!! TTAATTTTTATGCAACTGTT+GGG - chr2_3:40131962-40131981 Msa0291520:intron 20.0%
!!! TTCGTTGCATTTTATATTTA+GGG + chr2_3:40132039-40132058 None:intergenic 20.0%
!!! GAAGAAACATTTTGATTAAA+CGG + chr2_3:40132841-40132860 None:intergenic 20.0%
!!! CATTTTATAATTCTGAAACA+TGG + chr2_3:40132888-40132907 None:intergenic 20.0%
!! CATGTTTCAGAATTATAAAA+TGG - chr2_3:40132886-40132905 Msa0291520:intron 20.0%
!! AAATTTCTTATTAGTGATCT+TGG - chr2_3:40132987-40133006 Msa0291520:intron 20.0%
!! GAAACAAACAACATAAAAAA+TGG + chr2_3:40133140-40133159 None:intergenic 20.0%
!! GAAAAGAATTAAAAAGAAAG+AGG + chr2_3:40133162-40133181 None:intergenic 20.0%
!! CCAAAAGAAAAAAAAATATC+CGG - chr2_3:40133189-40133208 Msa0291520:CDS 20.0%
!! AAATAGACAAATACTGAAAA+GGG + chr2_3:40133384-40133403 None:intergenic 20.0%
!!! AATTTTTAGCTCAATTTGAT+CGG + chr2_3:40133434-40133453 None:intergenic 20.0%
!! ATCCAATCTGAATAATTAAA+AGG - chr2_3:40133466-40133485 Msa0291520:intron 20.0%
!!! TACCTTTTAATTATTCAGAT+TGG + chr2_3:40133471-40133490 None:intergenic 20.0%
!!! GATTAGAGTCTTAATATTTT+TGG + chr2_3:40133873-40133892 None:intergenic 20.0%
!!! TTCTTTTTCTTATTTTTTGC+TGG - chr2_3:40133955-40133974 Msa0291520:CDS 20.0%
!! AGTTTAATTGAATTTCAAGA+TGG - chr2_3:40134179-40134198 Msa0291520:intron 20.0%
!! GTTTAATTGAATTTCAAGAT+GGG - chr2_3:40134180-40134199 Msa0291520:intron 20.0%
!!! TTAGATAAAAGTTTTTCAGA+AGG + chr2_3:40134271-40134290 None:intergenic 20.0%
! GAAACAAGAGAAAGTAATTA+TGG + chr2_3:40128818-40128837 None:intergenic 25.0%
!! CATGTTATTTAACAATACGA+AGG + chr2_3:40128864-40128883 None:intergenic 25.0%
!! TGTTTTCGATTTTGAATGTA+GGG - chr2_3:40128884-40128903 Msa0291520:exon 25.0%
! ATCACATCAAATCAAACAAT+GGG - chr2_3:40128925-40128944 Msa0291520:intron 25.0%
! AACAAATCCACAAATCAAAT+CGG - chr2_3:40129220-40129239 Msa0291520:intron 25.0%
!! TTGATTTCGGTAATTGATTT+CGG - chr2_3:40129248-40129267 Msa0291520:intron 25.0%
!!! TTTTTCCTTATTAGAAGCAT+GGG - chr2_3:40129323-40129342 Msa0291520:intron 25.0%
! AGAGGATATTTGCAAATAAA+TGG + chr2_3:40129609-40129628 None:intergenic 25.0%
! ACAAATTGCAGAAATAATAG+AGG + chr2_3:40129627-40129646 None:intergenic 25.0%
!!! TTTCTAACTTTGATTTTGTG+TGG - chr2_3:40129654-40129673 Msa0291520:intron 25.0%
! GTTTATCTAATAATCCTTCT+CGG - chr2_3:40129997-40130016 Msa0291520:intron 25.0%
! ATTCAAGATTTCATACATTC+TGG - chr2_3:40130196-40130215 Msa0291520:intron 25.0%
! CAGTTATTAACACCAAATAT+AGG - chr2_3:40130261-40130280 Msa0291520:intron 25.0%
! TAAGTTCAAACATGTTTGTA+TGG - chr2_3:40130327-40130346 Msa0291520:intron 25.0%
! GTGATATTTGCTTCATATTA+TGG - chr2_3:40130370-40130389 Msa0291520:intron 25.0%
!! TCTTTCATTTCATTTTGTCT+GGG + chr2_3:40130462-40130481 None:intergenic 25.0%
!! TTCTTTCATTTCATTTTGTC+TGG + chr2_3:40130463-40130482 None:intergenic 25.0%
! TCAATAGTTTATCTCTTACA+AGG + chr2_3:40130769-40130788 None:intergenic 25.0%
!!! TCAATTTTGTTTTTGTTCAG+TGG - chr2_3:40130932-40130951 Msa0291520:intron 25.0%
! GAATATTGCAATACATAGTA+TGG + chr2_3:40131036-40131055 None:intergenic 25.0%
! GAATCATATAGACCAAATAT+AGG + chr2_3:40131074-40131093 None:intergenic 25.0%
! TTACAAGCAATACGAAATAA+AGG + chr2_3:40131147-40131166 None:intergenic 25.0%
! AAACCAAAAGATAACAGAAA+AGG + chr2_3:40131340-40131359 None:intergenic 25.0%
! CATAACATAAACTTATATGC+TGG + chr2_3:40131558-40131577 None:intergenic 25.0%
!!! TTTTATTTTTTGTGATGGGA+GGG + chr2_3:40131593-40131612 None:intergenic 25.0%
!!! ATTTTATTTTTTGTGATGGG+AGG + chr2_3:40131594-40131613 None:intergenic 25.0%
!!! ACTTTGAAAAGCATCAAAAT+GGG + chr2_3:40131763-40131782 None:intergenic 25.0%
!!! AACTTTGAAAAGCATCAAAA+TGG + chr2_3:40131764-40131783 None:intergenic 25.0%
! TTAACATATGATGATAATCG+AGG + chr2_3:40131840-40131859 None:intergenic 25.0%
! TCGATTATCATCATATGTTA+AGG - chr2_3:40131839-40131858 Msa0291520:intron 25.0%
! CGATTATCATCATATGTTAA+GGG - chr2_3:40131840-40131859 Msa0291520:intron 25.0%
!! AAGTTTGAAATGAGTTTCAA+AGG - chr2_3:40131863-40131882 Msa0291520:intron 25.0%
!! GTTAATTTTTATGCAACTGT+TGG - chr2_3:40131961-40131980 Msa0291520:intron 25.0%
!! GATAAACATTTTGTTCCTAT+TGG - chr2_3:40131998-40132017 Msa0291520:CDS 25.0%
! TTATATTTAGGGGTTCATTA+TGG + chr2_3:40132028-40132047 None:intergenic 25.0%
!! TCGTTGCATTTTATATTTAG+GGG + chr2_3:40132038-40132057 None:intergenic 25.0%
!! GTTCGTTGCATTTTATATTT+AGG + chr2_3:40132040-40132059 None:intergenic 25.0%
! TTGTGTGTATAAAAAAGAGT+CGG + chr2_3:40132076-40132095 None:intergenic 25.0%
!! TTGAAGTTACTGTACTTTTA+AGG - chr2_3:40132320-40132339 Msa0291520:intron 25.0%
!! TGAAGTTACTGTACTTTTAA+GGG - chr2_3:40132321-40132340 Msa0291520:intron 25.0%
!! ATTAATGATGGCAATGTTTT+AGG - chr2_3:40132479-40132498 Msa0291520:intron 25.0%
! TTTAATGCATAAACGTTACA+CGG + chr2_3:40132740-40132759 None:intergenic 25.0%
! AGAAATAAACACACAAAAAC+TGG + chr2_3:40132818-40132837 None:intergenic 25.0%
! TCAGAATTATAAAATGGAGA+AGG - chr2_3:40132892-40132911 Msa0291520:intron 25.0%
! ACATAAAAAATGGCAATGAA+GGG + chr2_3:40133130-40133149 None:intergenic 25.0%
! AACATAAAAAATGGCAATGA+AGG + chr2_3:40133131-40133150 None:intergenic 25.0%
!!! CCGGATATTTTTTTTTCTTT+TGG + chr2_3:40133192-40133211 None:intergenic 25.0%
! TTAGTTTCAAAGACTAACAA+AGG + chr2_3:40133215-40133234 None:intergenic 25.0%
! TCAGCAAAAAACATTGAAAT+CGG - chr2_3:40133274-40133293 Msa0291520:intron 25.0%
! TTGTTCCCTAAAATATACTT+TGG - chr2_3:40133334-40133353 Msa0291520:intron 25.0%
! AATAGACAAATACTGAAAAG+GGG + chr2_3:40133383-40133402 None:intergenic 25.0%
! CAAATAGACAAATACTGAAA+AGG + chr2_3:40133385-40133404 None:intergenic 25.0%
! TATTTGAACTTTGTATCATC+TGG - chr2_3:40133399-40133418 Msa0291520:intron 25.0%
! TTGAGCTAAAAATTATGCTA+TGG - chr2_3:40133440-40133459 Msa0291520:intron 25.0%
! TGAGCTAAAAATTATGCTAT+GGG - chr2_3:40133441-40133460 Msa0291520:intron 25.0%
! AGCTACTGAAATGAATATTA+TGG - chr2_3:40133532-40133551 Msa0291520:intron 25.0%
! ACTGTGAAGTTATAAATTCT+TGG - chr2_3:40133697-40133716 Msa0291520:intron 25.0%
!!! GCAACATATATTTTTAATGG+AGG - chr2_3:40133792-40133811 Msa0291520:intron 25.0%
!!! TTTTGTTTTACCAATGCAAA+TGG - chr2_3:40133899-40133918 Msa0291520:intron 25.0%
!!! TTTTTCTTATTTTTTGCTGG+TGG - chr2_3:40133958-40133977 Msa0291520:CDS 25.0%
!!! TTTTCTTATTTTTTGCTGGT+GGG - chr2_3:40133959-40133978 Msa0291520:CDS 25.0%
!!! TTTGTTTTGAATACCTGATT+TGG - chr2_3:40134020-40134039 Msa0291520:CDS 25.0%
! TAGTCTGTTAATTATATTGC+AGG - chr2_3:40134051-40134070 Msa0291520:exon 25.0%
! AGTCTGTTAATTATATTGCA+GGG - chr2_3:40134052-40134071 Msa0291520:exon 25.0%
! AAATAATCATCAATTTCAGC+TGG + chr2_3:40134086-40134105 None:intergenic 25.0%
!! AGCTGAAATTGATGATTATT+TGG - chr2_3:40134085-40134104 Msa0291520:intron 25.0%
!! GCTGAAATTGATGATTATTT+GGG - chr2_3:40134086-40134105 Msa0291520:intron 25.0%
! TATGAAATAAACACCAACTT+CGG + chr2_3:40134155-40134174 None:intergenic 25.0%
TTAGAAAGAGAAAGAGAAAG+AGG + chr2_3:40128766-40128785 None:intergenic 30.0%
TCTTTCTCTTTCTAATTCTC+AGG - chr2_3:40128771-40128790 Msa0291520:three_prime_UTR 30.0%
AGTAATTATGGGAAAAACGA+AGG + chr2_3:40128806-40128825 None:intergenic 30.0%
TAACAATACGAAGGAAGTAA+TGG + chr2_3:40128855-40128874 None:intergenic 30.0%
! GTGTTTTCGATTTTGAATGT+AGG - chr2_3:40128883-40128902 Msa0291520:exon 30.0%
CATCACATCAAATCAAACAA+TGG - chr2_3:40128924-40128943 Msa0291520:intron 30.0%
CCTAAAACATGAGGAAAAAA+GGG + chr2_3:40129101-40129120 None:intergenic 30.0%
!!! CCTTTTTTCCTCATGTTTTA+GGG - chr2_3:40129099-40129118 Msa0291520:intron 30.0%
AATAAGAACCCTAAAACATG+AGG + chr2_3:40129110-40129129 None:intergenic 30.0%
! CTTTTTCCTTATTAGAAGCA+TGG - chr2_3:40129322-40129341 Msa0291520:intron 30.0%
ATGCTTCAGTACTATCATAT+TGG - chr2_3:40129553-40129572 Msa0291520:intron 30.0%
! AACTTGTTCATATTGCACAT+AGG - chr2_3:40129579-40129598 Msa0291520:intron 30.0%
!!! TCAGTAAGTTGCTTTTTCTT+TGG - chr2_3:40129834-40129853 Msa0291520:intron 30.0%
AATTGGATACAATCTTGAAG+TGG + chr2_3:40129907-40129926 None:intergenic 30.0%
CTTCAAGATTGTATCCAATT+TGG - chr2_3:40129907-40129926 Msa0291520:intron 30.0%
AGGATGCTGAGTAATTTAAA+GGG + chr2_3:40129955-40129974 None:intergenic 30.0%
AAGGATGCTGAGTAATTTAA+AGG + chr2_3:40129956-40129975 None:intergenic 30.0%
TTCTTATATCGTGATAGTTG+AGG - chr2_3:40130056-40130075 Msa0291520:intron 30.0%
CTGTATACAACACCTATATT+TGG + chr2_3:40130276-40130295 None:intergenic 30.0%
! CAAATATAGGTGTTGTATAC+AGG - chr2_3:40130274-40130293 Msa0291520:intron 30.0%
TGAATATGTTCTTAAACACG+AGG - chr2_3:40130411-40130430 Msa0291520:intron 30.0%
! TGCTATTTGAAGTTTCTGTT+AGG - chr2_3:40130434-40130453 Msa0291520:intron 30.0%
ACATAGCTGAATTATATCCA+AGG - chr2_3:40130530-40130549 Msa0291520:intron 30.0%
CATAGCTGAATTATATCCAA+GGG - chr2_3:40130531-40130550 Msa0291520:intron 30.0%
TGTTTGTGAAAACTGTTTCA+AGG + chr2_3:40130692-40130711 None:intergenic 30.0%
TATGGTGTACCTTATACAAT+CGG + chr2_3:40131018-40131037 None:intergenic 30.0%
TATATCAAATTCCGAAGTAC+AGG + chr2_3:40131113-40131132 None:intergenic 30.0%
GCAATACGAAATAAAGGAAT+AGG + chr2_3:40131141-40131160 None:intergenic 30.0%
! TTGCCTTTTCTGTTATCTTT+TGG - chr2_3:40131334-40131353 Msa0291520:intron 30.0%
ATACTGTAAGTGAAAATTGC+AGG - chr2_3:40131396-40131415 Msa0291520:intron 30.0%
AATGGGTACTTCATATTGAT+TGG + chr2_3:40131746-40131765 None:intergenic 30.0%
AAATACACGTTCTTTCAGAA+AGG + chr2_3:40131917-40131936 None:intergenic 30.0%
! TTTCTGAAAGAACGTGTATT+TGG - chr2_3:40131916-40131935 Msa0291520:intron 30.0%
! TTCTGAAAGAACGTGTATTT+GGG - chr2_3:40131917-40131936 Msa0291520:intron 30.0%
GTTCATTATGGAATTCCAAT+AGG + chr2_3:40132016-40132035 None:intergenic 30.0%
TAAAATGCAACGAACTTAGT+TGG - chr2_3:40132045-40132064 Msa0291520:intron 30.0%
ATGATAATAAAGGGGAGAAA+TGG + chr2_3:40132113-40132132 None:intergenic 30.0%
!! TACTTTTAAGGGAAAGAGAA+GGG - chr2_3:40132332-40132351 Msa0291520:intron 30.0%
!!! TTGAAAGTTGTTTTTGCTGT+AGG - chr2_3:40132359-40132378 Msa0291520:intron 30.0%
CAAGAAAAATATGAACCTGA+TGG + chr2_3:40132390-40132409 None:intergenic 30.0%
! CATCAGGTTCATATTTTTCT+TGG - chr2_3:40132388-40132407 Msa0291520:intron 30.0%
GTATGCTTTCACATTAATGA+TGG - chr2_3:40132467-40132486 Msa0291520:intron 30.0%
!! CAATGTTTTAGGCAAATATG+CGG - chr2_3:40132490-40132509 Msa0291520:intron 30.0%
TATCTACAATTGGACAATCA+AGG + chr2_3:40132646-40132665 None:intergenic 30.0%
ATCATCAGTGTATCTACAAT+TGG + chr2_3:40132656-40132675 None:intergenic 30.0%
TTGTAGATACACTGATGATA+TGG - chr2_3:40132657-40132676 Msa0291520:intron 30.0%
GGTTCAACTGAAAAATATTG+AGG - chr2_3:40132940-40132959 Msa0291520:intron 30.0%
! TTGAAACTAATCCCTTTTGT+TGG - chr2_3:40133225-40133244 Msa0291520:intron 30.0%
! GTCAGCCAAAGTATATTTTA+GGG + chr2_3:40133342-40133361 None:intergenic 30.0%
! AGTCAGCCAAAGTATATTTT+AGG + chr2_3:40133343-40133362 None:intergenic 30.0%
ATAGACAAATACTGAAAAGG+GGG + chr2_3:40133382-40133401 None:intergenic 30.0%
! AGGTATAAATTTGAGGCATA+TGG - chr2_3:40133486-40133505 Msa0291520:intron 30.0%
! GGTATAAATTTGAGGCATAT+GGG - chr2_3:40133487-40133506 Msa0291520:intron 30.0%
! TTTGTTATACATTTGCACCA+TGG - chr2_3:40133559-40133578 Msa0291520:intron 30.0%
ATTTACATTGTTCGACAAAC+TGG - chr2_3:40133844-40133863 Msa0291520:intron 30.0%
!!! TTTCTTATTTTTTGCTGGTG+GGG - chr2_3:40133960-40133979 Msa0291520:CDS 30.0%
AAACAAAAACTTGAGCTTAC+TGG + chr2_3:40134007-40134026 None:intergenic 30.0%
GACTATTAAGTTACCAAATC+AGG + chr2_3:40134036-40134055 None:intergenic 30.0%
ATGAAATAAACACCAACTTC+GGG + chr2_3:40134154-40134173 None:intergenic 30.0%
AGAAAGAGAAAGAGGAAGAA+TGG + chr2_3:40128758-40128777 None:intergenic 35.0%
TGAATGTAGGGTTGTTTGTA+AGG - chr2_3:40128896-40128915 Msa0291520:CDS 35.0%
! CTAACAACTTTTAGTCCTTC+TGG - chr2_3:40128970-40128989 Msa0291520:intron 35.0%
AAACATGAGGAAAAAAGGGT+TGG + chr2_3:40129097-40129116 None:intergenic 35.0%
!!! CCCTTTTTTCCTCATGTTTT+AGG - chr2_3:40129098-40129117 Msa0291520:intron 35.0%
CCCTAAAACATGAGGAAAAA+AGG + chr2_3:40129102-40129121 None:intergenic 35.0%
AAATCCACAAATCAAATCGG+TGG - chr2_3:40129223-40129242 Msa0291520:intron 35.0%
TTTCCGAGTTCACTTTATCT+CGG - chr2_3:40129293-40129312 Msa0291520:intron 35.0%
TACAAGTTCAATCTACCACT+AGG + chr2_3:40129371-40129390 None:intergenic 35.0%
! TGAAGCCTTGTGAGTTTATT+TGG - chr2_3:40129457-40129476 Msa0291520:intron 35.0%
! GAAGCCTTGTGAGTTTATTT+GGG - chr2_3:40129458-40129477 Msa0291520:intron 35.0%
TGTGCAGGATAAGTTATGTT+GGG - chr2_3:40129486-40129505 Msa0291520:intron 35.0%
TTGTTCATATTGCACATAGG+AGG - chr2_3:40129582-40129601 Msa0291520:intron 35.0%
GAAGAAACTGCCATCTATAT+TGG - chr2_3:40129800-40129819 Msa0291520:intron 35.0%
GCTTCATCAACCAATATAGA+TGG + chr2_3:40129813-40129832 None:intergenic 35.0%
AAACAATAGCACAGCCAAAT+TGG + chr2_3:40129924-40129943 None:intergenic 35.0%
GGATGCTGAGTAATTTAAAG+GGG + chr2_3:40129954-40129973 None:intergenic 35.0%
GTTGAGGATACTTGAAAGTA+TGG - chr2_3:40130072-40130091 Msa0291520:intron 35.0%
! TACTTGAAAGTATGGCCAAT+TGG - chr2_3:40130080-40130099 Msa0291520:intron 35.0%
TTGTTCTATCAATGGCCAAT+TGG + chr2_3:40130098-40130117 None:intergenic 35.0%
! CTCTTTGTTTATATGACTGC+AGG - chr2_3:40130227-40130246 Msa0291520:intron 35.0%
CTTCATATTATGGCAGTTGA+TGG - chr2_3:40130380-40130399 Msa0291520:intron 35.0%
GATTCATCAAGTACTTCTGA+GGG + chr2_3:40130595-40130614 None:intergenic 35.0%
TGATTCATCAAGTACTTCTG+AGG + chr2_3:40130596-40130615 None:intergenic 35.0%
ATAAATAGGGGGAATCAGTT+TGG + chr2_3:40130620-40130639 None:intergenic 35.0%
!! TGATGGGTTAGATAAATAGG+GGG + chr2_3:40130631-40130650 None:intergenic 35.0%
!! GTGATGGGTTAGATAAATAG+GGG + chr2_3:40130632-40130651 None:intergenic 35.0%
!! GGTGATGGGTTAGATAAATA+GGG + chr2_3:40130633-40130652 None:intergenic 35.0%
!! AGGTGATGGGTTAGATAAAT+AGG + chr2_3:40130634-40130653 None:intergenic 35.0%
CAACAGCAATGGAAAAAAGT+AGG + chr2_3:40130847-40130866 None:intergenic 35.0%
!!! TTTGTTTTTGTTCAGTGGCA+TGG - chr2_3:40130937-40130956 Msa0291520:intron 35.0%
!!! TTGTTTTTGTTCAGTGGCAT+GGG - chr2_3:40130938-40130957 Msa0291520:intron 35.0%
!!! TGCTTTTTCGAACCAAAACT+CGG + chr2_3:40130973-40130992 None:intergenic 35.0%
CAATGTTGTAACCTGTACTT+CGG - chr2_3:40131099-40131118 Msa0291520:intron 35.0%
CGTATTGCTTGTAATGAGTT+AGG - chr2_3:40131153-40131172 Msa0291520:intron 35.0%
AAGATAACAGAAAAGGCAAC+TGG + chr2_3:40131333-40131352 None:intergenic 35.0%
TTATATGCTGGGAGTAGATA+TGG + chr2_3:40131546-40131565 None:intergenic 35.0%
AGAGAAATAACGTGTAATCC+AGG - chr2_3:40131633-40131652 Msa0291520:intron 35.0%
GATAAAACACCAACTTTACC+TGG + chr2_3:40131654-40131673 None:intergenic 35.0%
!! CCAAAAACTCAAAGTTGATG+AGG + chr2_3:40131676-40131695 None:intergenic 35.0%
!! CCTCATCAACTTTGAGTTTT+TGG - chr2_3:40131673-40131692 Msa0291520:intron 35.0%
TCTGAAAGAACGTGTATTTG+GGG - chr2_3:40131918-40131937 Msa0291520:intron 35.0%
TGTGTATAAAAAAGAGTCGG+AGG + chr2_3:40132073-40132092 None:intergenic 35.0%
!!! TTCTTTTTTTGCCCTGATAG+TGG - chr2_3:40132147-40132166 Msa0291520:intron 35.0%
! TAATGGACCACAACTATATC+AGG - chr2_3:40132215-40132234 Msa0291520:intron 35.0%
ACTATATCAGGTATGGCATA+TGG - chr2_3:40132227-40132246 Msa0291520:intron 35.0%
!! TGTGTTTGATTAGTTTGCAC+TGG - chr2_3:40132269-40132288 Msa0291520:intron 35.0%
!! GTACTTTTAAGGGAAAGAGA+AGG - chr2_3:40132331-40132350 Msa0291520:intron 35.0%
!!! AAAGTTGTTTTTGCTGTAGG+TGG - chr2_3:40132362-40132381 Msa0291520:intron 35.0%
CTAAGACATTTCTTGAGAAG+AGG - chr2_3:40132445-40132464 Msa0291520:intron 35.0%
ATGAATTGATAGAGATGTCG+AGG + chr2_3:40132617-40132636 None:intergenic 35.0%
TTTATCGTACACTAACTGAC+AGG + chr2_3:40132863-40132882 None:intergenic 35.0%
AAGGAAAATGCACCTAAGAT+TGG - chr2_3:40132911-40132930 Msa0291520:intron 35.0%
! CATGATGATTTTACAGGGAT+GGG + chr2_3:40133026-40133045 None:intergenic 35.0%
! TCATGATGATTTTACAGGGA+TGG + chr2_3:40133027-40133046 None:intergenic 35.0%
! CAGCTCATGATGATTTTACA+GGG + chr2_3:40133031-40133050 None:intergenic 35.0%
TTTCAAAGACTAACAAAGGC+CGG + chr2_3:40133211-40133230 None:intergenic 35.0%
AACATTGAAATCGGCATCAT+TGG - chr2_3:40133283-40133302 Msa0291520:intron 35.0%
! AAATTTGAGGCATATGGGTT+AGG - chr2_3:40133492-40133511 Msa0291520:intron 35.0%
! TGATCTAAGCTTTTTGACCA+TGG + chr2_3:40133579-40133598 None:intergenic 35.0%
AAAGCTTAGATCAAGTCCTT+TGG - chr2_3:40133586-40133605 Msa0291520:intron 35.0%
AAGCTTAGATCAAGTCCTTT+GGG - chr2_3:40133587-40133606 Msa0291520:intron 35.0%
TGCTACTCACAAAATGCATT+GGG + chr2_3:40133932-40133951 None:intergenic 35.0%
TTGCTACTCACAAAATGCAT+TGG + chr2_3:40133933-40133952 None:intergenic 35.0%
TGATGAATGAAGACTTGTGA+TGG - chr2_3:40134204-40134223 Msa0291520:intron 35.0%
AAATTTGTGAGCTACTCTTG+TGG - chr2_3:40134234-40134253 Msa0291520:five_prime_UTR 35.0%
TAAGTCAGGGAAGAATGAGT+AGG + chr2_3:40128692-40128711 None:intergenic 40.0%
GCGTAGATGTATGTAAGTCA+GGG + chr2_3:40128705-40128724 None:intergenic 40.0%
AGCGTAGATGTATGTAAGTC+AGG + chr2_3:40128706-40128725 None:intergenic 40.0%
ATCTGAACAAGCTTACCAGA+AGG + chr2_3:40128988-40129007 None:intergenic 40.0%
GAACATGCTTTAACTGCTGT+TGG - chr2_3:40129009-40129028 Msa0291520:intron 40.0%
CAAACTTCTCTCGGTATCAA+AGG - chr2_3:40129039-40129058 Msa0291520:intron 40.0%
!! AAGTCCACCGATTTGATTTG+TGG + chr2_3:40129230-40129249 None:intergenic 40.0%
! CAAATCGGTGGACTTGATTT+CGG - chr2_3:40129235-40129254 Msa0291520:intron 40.0%
GTACCGAGATAAAGTGAACT+CGG + chr2_3:40129299-40129318 None:intergenic 40.0%
AGTTCAATCTACCACTAGGA+GGG + chr2_3:40129367-40129386 None:intergenic 40.0%
AAGTTCAATCTACCACTAGG+AGG + chr2_3:40129368-40129387 None:intergenic 40.0%
CTTGTATGATTGTCGTCTGA+TGG - chr2_3:40129385-40129404 Msa0291520:intron 40.0%
! ATGATTGTCGTCTGATGGAT+AGG - chr2_3:40129390-40129409 Msa0291520:intron 40.0%
CATGCCCAAATAAACTCACA+AGG + chr2_3:40129465-40129484 None:intergenic 40.0%
CTTGTGAGTTTATTTGGGCA+TGG - chr2_3:40129463-40129482 Msa0291520:intron 40.0%
GTGTGCAGGATAAGTTATGT+TGG - chr2_3:40129485-40129504 Msa0291520:intron 40.0%
TCTCAAATACTAAGCCGAGA+AGG + chr2_3:40130014-40130033 None:intergenic 40.0%
TAGTTTCCGCAAGTTGTTTG+TGG - chr2_3:40130127-40130146 Msa0291520:intron 40.0%
GAAAGTCCACAAACAACTTG+CGG + chr2_3:40130136-40130155 None:intergenic 40.0%
! TTTTGTGAAGGGAAAACCCT+TGG + chr2_3:40130550-40130569 None:intergenic 40.0%
! AAGGGTTTTCCCTTCACAAA+AGG - chr2_3:40130549-40130568 Msa0291520:CDS 40.0%
AGGGTTTGTAAACGAAAGGA+GGG + chr2_3:40130576-40130595 None:intergenic 40.0%
TCTGAGGGTTTGTAAACGAA+AGG + chr2_3:40130580-40130599 None:intergenic 40.0%
CTGTTTCAAGGAGTTACTCA+GGG + chr2_3:40130680-40130699 None:intergenic 40.0%
ACTGTTTCAAGGAGTTACTC+AGG + chr2_3:40130681-40130700 None:intergenic 40.0%
!! TTCCATTGCTGTTGAGCTTT+TGG - chr2_3:40130853-40130872 Msa0291520:intron 40.0%
TACCAAAAGCTCAACAGCAA+TGG + chr2_3:40130858-40130877 None:intergenic 40.0%
! GAGCTTTTGGTATATGACAG+TGG - chr2_3:40130866-40130885 Msa0291520:intron 40.0%
!!! GAGTTTTGGTTCGAAAAAGC+AGG - chr2_3:40130972-40130991 Msa0291520:intron 40.0%
! GCAGTATCACCGATTGTATA+AGG - chr2_3:40131006-40131025 Msa0291520:intron 40.0%
CTTCCTGTTCTGCCTATATT+TGG - chr2_3:40131059-40131078 Msa0291520:intron 40.0%
AGACCAAATATAGGCAGAAC+AGG + chr2_3:40131065-40131084 None:intergenic 40.0%
ATGCAGGAATTTACTCAGTC+TGG - chr2_3:40131463-40131482 Msa0291520:intron 40.0%
TGCAGGAATTTACTCAGTCT+GGG - chr2_3:40131464-40131483 Msa0291520:intron 40.0%
ACGTGTAATCCAGGTAAAGT+TGG - chr2_3:40131642-40131661 Msa0291520:intron 40.0%
! GTTGCTGGGTTTGATGATAA+TGG - chr2_3:40132198-40132217 Msa0291520:intron 40.0%
GACCACAACTATATCAGGTA+TGG - chr2_3:40132220-40132239 Msa0291520:intron 40.0%
TGCCATACCTGATATAGTTG+TGG + chr2_3:40132225-40132244 None:intergenic 40.0%
TTCTTGGAAAGCTTCTGCTA+TGG - chr2_3:40132404-40132423 Msa0291520:intron 40.0%
TCTTGGAAAGCTTCTGCTAT+GGG - chr2_3:40132405-40132424 Msa0291520:intron 40.0%
CCATATTGACACTGAAGGAA+GGG - chr2_3:40132704-40132723 Msa0291520:intron 40.0%
TGAACCAAGAAGCCAATCTT+AGG + chr2_3:40132926-40132945 None:intergenic 40.0%
GTGATCTTGGCATATACCAA+AGG - chr2_3:40133000-40133019 Msa0291520:intron 40.0%
! GCAGCTCATGATGATTTTAC+AGG + chr2_3:40133032-40133051 None:intergenic 40.0%
AGTTCCTAATCCAACAAGCT+TGG + chr2_3:40133073-40133092 None:intergenic 40.0%
TTGGTGCAGACAAAAAGTTC+AGG - chr2_3:40133302-40133321 Msa0291520:intron 40.0%
CAAAACCAAACAACACCCAA+AGG + chr2_3:40133605-40133624 None:intergenic 40.0%
CACAAAATTGGACATGGTGT+TGG + chr2_3:40133658-40133677 None:intergenic 40.0%
! CAACACCATGTCCAATTTTG+TGG - chr2_3:40133656-40133675 Msa0291520:intron 40.0%
GGGAAGTTATCCATTTGCAT+TGG + chr2_3:40133912-40133931 None:intergenic 40.0%
!! AAGTTTTTCAGAAGGCTTGC+TGG + chr2_3:40134263-40134282 None:intergenic 40.0%
! GCGAGTATTGTGTTGTGTTG+TGG + chr2_3:40128736-40128755 None:intergenic 45.0%
!! GCTTTAACTGCTGTTGGTTC+TGG - chr2_3:40129015-40129034 Msa0291520:intron 45.0%
!! GGTTCTGGACAAACTTCTCT+CGG - chr2_3:40129030-40129049 Msa0291520:intron 45.0%
! TCCTTATTAGAAGCATGGGC+AGG - chr2_3:40129327-40129346 Msa0291520:intron 45.0%
! CCTTATTAGAAGCATGGGCA+GGG - chr2_3:40129328-40129347 Msa0291520:intron 45.0%
TTAACTTCTGTCCCTCCTAG+TGG - chr2_3:40129353-40129372 Msa0291520:intron 45.0%
TTTATTTGGGCATGGTGTGC+AGG - chr2_3:40129471-40129490 Msa0291520:intron 45.0%
GCAGGATAAGTTATGTTGGG+AGG - chr2_3:40129489-40129508 Msa0291520:intron 45.0%
! TTGGTTCTTGCAGCTGCAAA+TGG - chr2_3:40129759-40129778 Msa0291520:intron 45.0%
AGATGGCAGTTTCTTCTCAG+TGG + chr2_3:40129796-40129815 None:intergenic 45.0%
! AAGGAGGGACCTTTTGTGAA+GGG + chr2_3:40130561-40130580 None:intergenic 45.0%
! AAAGGAGGGACCTTTTGTGA+AGG + chr2_3:40130562-40130581 None:intergenic 45.0%
GAGGGTTTGTAAACGAAAGG+AGG + chr2_3:40130577-40130596 None:intergenic 45.0%
GGAAGGGATTAGAAGGTGAT+GGG + chr2_3:40130647-40130666 None:intergenic 45.0%
TGGAAGGGATTAGAAGGTGA+TGG + chr2_3:40130648-40130667 None:intergenic 45.0%
TCAAGGAGTTACTCAGGGAT+AGG + chr2_3:40130675-40130694 None:intergenic 45.0%
CGAACCAAAACTCGGAAATC+AGG + chr2_3:40130965-40130984 None:intergenic 45.0%
GGTTCGAAAAAGCAGGAAAC+AGG - chr2_3:40130979-40130998 Msa0291520:intron 45.0%
! ACAAGTTGAGTGACAGGGAT+TGG + chr2_3:40131424-40131443 None:intergenic 45.0%
TCCCTGTCACTCAACTTGTA+AGG - chr2_3:40131425-40131444 Msa0291520:intron 45.0%
! CCCTTACAAGTTGAGTGACA+GGG + chr2_3:40131429-40131448 None:intergenic 45.0%
CCCTGTCACTCAACTTGTAA+GGG - chr2_3:40131426-40131445 Msa0291520:intron 45.0%
! TCCCTTACAAGTTGAGTGAC+AGG + chr2_3:40131430-40131449 None:intergenic 45.0%
!! TTTGCCCTGATAGTGGTGTT+AGG - chr2_3:40132154-40132173 Msa0291520:intron 45.0%
ATGGCCTAACACCACTATCA+GGG + chr2_3:40132161-40132180 None:intergenic 45.0%
AATGGCCTAACACCACTATC+AGG + chr2_3:40132162-40132181 None:intergenic 45.0%
! GATAGTGGTGTTAGGCCATT+TGG - chr2_3:40132162-40132181 Msa0291520:intron 45.0%
ATCAAACCCAGCAACAAGCA+GGG + chr2_3:40132193-40132212 None:intergenic 45.0%
CTTGGAAAGCTTCTGCTATG+GGG - chr2_3:40132406-40132425 Msa0291520:intron 45.0%
TCAGTGTCAATATGGCTGTG+TGG + chr2_3:40132699-40132718 None:intergenic 45.0%
CACAGCCATATTGACACTGA+AGG - chr2_3:40132699-40132718 Msa0291520:intron 45.0%
GCCATATTGACACTGAAGGA+AGG - chr2_3:40132703-40132722 Msa0291520:intron 45.0%
CCCTTCCTTCAGTGTCAATA+TGG + chr2_3:40132707-40132726 None:intergenic 45.0%
ATTGACACTGAAGGAAGGGT+AGG - chr2_3:40132708-40132727 Msa0291520:intron 45.0%
!! TGCACCTAAGATTGGCTTCT+TGG - chr2_3:40132919-40132938 Msa0291520:intron 45.0%
! ATTTTACAGGGATGGGCCTT+TGG + chr2_3:40133019-40133038 None:intergenic 45.0%
TTGGAGCCTTGCTAACGTAA+AGG + chr2_3:40133054-40133073 None:intergenic 45.0%
CCTGGGAAATGCCAACAAAA+GGG + chr2_3:40133239-40133258 None:intergenic 45.0%
ACCTGGGAAATGCCAACAAA+AGG + chr2_3:40133240-40133259 None:intergenic 45.0%
TTGGCATTTCCCAGGTTTGA+GGG - chr2_3:40133244-40133263 Msa0291520:intron 45.0%
!! TATGGGTTAGGACTGCGAAA+TGG - chr2_3:40133504-40133523 Msa0291520:intron 45.0%
!! CAAGTCCTTTGGGTGTTGTT+TGG - chr2_3:40133597-40133616 Msa0291520:intron 45.0%
!!! CTTATTTTTTGCTGGTGGGG+TGG - chr2_3:40133963-40133982 Msa0291520:CDS 45.0%
ATGAAGACTTGTGATGGCAC+TGG - chr2_3:40134210-40134229 Msa0291520:intron 45.0%
TTTGTGAGCTACTCTTGTGG+TGG - chr2_3:40134237-40134256 Msa0291520:five_prime_UTR 45.0%
CCCTGCCCATGCTTCTAATA+AGG + chr2_3:40129331-40129350 None:intergenic 50.0%
GGCAGTTGGAAGGGATTAGA+AGG + chr2_3:40130654-40130673 None:intergenic 50.0%
TCAGGGATAGGCAGTTGGAA+GGG + chr2_3:40130663-40130682 None:intergenic 50.0%
GTTACTCAGGGATAGGCAGT+TGG + chr2_3:40130668-40130687 None:intergenic 50.0%
! GGGTCCTGATTTCCGAGTTT+TGG - chr2_3:40130958-40130977 Msa0291520:intron 50.0%
ACAAGCAGGGACACTCCAAA+TGG + chr2_3:40132180-40132199 None:intergenic 50.0%
CATCAAACCCAGCAACAAGC+AGG + chr2_3:40132194-40132213 None:intergenic 50.0%
TTGCTGTAGGTGGATCCATC+AGG - chr2_3:40132372-40132391 Msa0291520:intron 50.0%
GAGCTGCCTTTACGTTAGCA+AGG - chr2_3:40133045-40133064 Msa0291520:intron 50.0%
TAGCAAGGCTCCAAGCTTGT+TGG - chr2_3:40133060-40133079 Msa0291520:intron 50.0%
!! GGCTCCAAGCTTGTTGGATT+AGG - chr2_3:40133066-40133085 Msa0291520:intron 50.0%
! CCCTTTTGTTGGCATTTCCC+AGG - chr2_3:40133236-40133255 Msa0291520:intron 50.0%
GTTGGCATTTCCCAGGTTTG+AGG - chr2_3:40133243-40133262 Msa0291520:intron 50.0%
GAGATCTGTCCCTCAAACCT+GGG + chr2_3:40133256-40133275 None:intergenic 50.0%
TGAGATCTGTCCCTCAAACC+TGG + chr2_3:40133257-40133276 None:intergenic 50.0%
CAACTTCGGGAACACAAGGA+TGG + chr2_3:40134141-40134160 None:intergenic 50.0%
CATCCTTGTGTTCCCGAAGT+TGG - chr2_3:40134139-40134158 Msa0291520:intron 50.0%
ACACCAACTTCGGGAACACA+AGG + chr2_3:40134145-40134164 None:intergenic 50.0%
CTCAGGGATAGGCAGTTGGA+AGG + chr2_3:40130664-40130683 None:intergenic 55.0%
GGAAGTTGCTGCTGTCATGC+AGG - chr2_3:40131447-40131466 Msa0291520:intron 55.0%
! GAGTGTCCCTGCTTGTTGCT+GGG - chr2_3:40132184-40132203 Msa0291520:intron 55.0%
! TTTTGCTGGTGGGGTGGCAT+TGG - chr2_3:40133969-40133988 Msa0291520:CDS 55.0%
TTTGCTGGTGGGGTGGCATT+GGG - chr2_3:40133970-40133989 Msa0291520:CDS 55.0%
! GGAGTGTCCCTGCTTGTTGC+TGG - chr2_3:40132183-40132202 Msa0291520:intron 60.0%
TTGCTGGTGGGGTGGCATTG+GGG - chr2_3:40133971-40133990 Msa0291520:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40128683 40134325 40128683 ID=Msa0291520;Name=Msa0291520
chr2_3 mRNA 40128683 40134325 40128683 ID=Msa0291520-mRNA-1;Parent=Msa0291520;Name=Msa0291520-mRNA-1;_AED=0.16;_eAED=0.16;_QI=148|1|1|1|0.81|0.66|12|181|235
chr2_3 exon 40128683 40128740 40128683 ID=Msa0291520-mRNA-1:exon:12886;Parent=Msa0291520-mRNA-1
chr2_3 exon 40128764 40128935 40128764 ID=Msa0291520-mRNA-1:exon:12885;Parent=Msa0291520-mRNA-1
chr2_3 exon 40129685 40129750 40129685 ID=Msa0291520-mRNA-1:exon:12884;Parent=Msa0291520-mRNA-1
chr2_3 exon 40130283 40130345 40130283 ID=Msa0291520-mRNA-1:exon:12883;Parent=Msa0291520-mRNA-1
chr2_3 exon 40130542 40130627 40130542 ID=Msa0291520-mRNA-1:exon:12882;Parent=Msa0291520-mRNA-1
chr2_3 exon 40130772 40130841 40130772 ID=Msa0291520-mRNA-1:exon:12881;Parent=Msa0291520-mRNA-1
chr2_3 exon 40131523 40131590 40131523 ID=Msa0291520-mRNA-1:exon:12880;Parent=Msa0291520-mRNA-1
chr2_3 exon 40131981 40132056 40131981 ID=Msa0291520-mRNA-1:exon:12879;Parent=Msa0291520-mRNA-1
chr2_3 exon 40132713 40132759 40132713 ID=Msa0291520-mRNA-1:exon:12878;Parent=Msa0291520-mRNA-1
chr2_3 exon 40133172 40133236 40133172 ID=Msa0291520-mRNA-1:exon:12877;Parent=Msa0291520-mRNA-1
chr2_3 exon 40133948 40134103 40133948 ID=Msa0291520-mRNA-1:exon:12876;Parent=Msa0291520-mRNA-1
chr2_3 exon 40134216 40134325 40134216 ID=Msa0291520-mRNA-1:exon:12875;Parent=Msa0291520-mRNA-1
chr2_3 five_prime_UTR 40134216 40134325 40134216 ID=Msa0291520-mRNA-1:five_prime_utr;Parent=Msa0291520-mRNA-1
chr2_3 five_prime_UTR 40134066 40134103 40134066 ID=Msa0291520-mRNA-1:five_prime_utr;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40133948 40134065 40133948 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40133172 40133236 40133172 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40132713 40132759 40132713 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40131981 40132056 40131981 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40131523 40131590 40131523 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40130772 40130841 40130772 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40130542 40130627 40130542 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40130283 40130345 40130283 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40129685 40129750 40129685 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 CDS 40128887 40128935 40128887 ID=Msa0291520-mRNA-1:cds;Parent=Msa0291520-mRNA-1
chr2_3 three_prime_UTR 40128764 40128886 40128764 ID=Msa0291520-mRNA-1:three_prime_utr;Parent=Msa0291520-mRNA-1
chr2_3 three_prime_UTR 40128683 40128740 40128683 ID=Msa0291520-mRNA-1:three_prime_utr;Parent=Msa0291520-mRNA-1
Gene Sequence

>Msa0291520

ATGGGAGATAGTCAATACTCGTTTTCTCTAACAACTTTTAGTCCTTCTGGTAAGCTTGTTCAGATTGAACATGCTTTAACTGCTGTTGGTTCTGGACAAACTTCTCTCGGTATCAAAGCTGCAAATGGAGTTGTCATTGCCACTGAGAAGAAACTGCCATCTATATTGGTTGATGAAGCATCAGTCCAAAAAATTCAGTTATTAACACCAAATATAGGTGTTGTATACAGTGGCATGGGTCCTGATTTCCGAGTTTTGGTTCGAAAAAGCAGGAAACAGGCTGAGCAGTATCACCGATTGTATAAGGAACCAATCCCTGTCACTCAACTTGTAAGGGAAGTTGCTGCTGTCATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCATTTGGAGTGTCCCTGCTTGTTGCTGGGTTTGATGATAATGGACCACAACTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCTAAGACATTTCTTGAGAAGAGATACACTGATGATATGGAGCTTGATGATGCAGTCCACACAGCCATATTGACACTGAAGGAAGGGTTTGAGGGACAGATCTCAGCAAAAAACATTGAAATCGGCATCATTGGTGCAGACAAAAAGTTCAGGGTATTGACACCAGCTGAAATTGATGATTATTTGGGTGAAGTAGAATAA

Protein sequence

>Msa0291520

MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEASVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISAKNIEIGIIGADKKFRVLTPAEIDDYLGEVE*