Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408150 | XP_013450667.1 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 4.96e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408150 | sp|Q8RV04|TI141_ARATH | 78.571 | 112 | 22 | 1 | 1 | 110 | 1 | 112 | 1.38e-61 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408150 | I3T234 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 2.37e-74 | 224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa1408150 | 0.811040 | 8.541147e-51 | -8.615850e-47 |
| Msa0006880 | Msa1408150 | 0.862586 | 4.563405e-64 | -8.615850e-47 |
| Msa0027580 | Msa1408150 | 0.804147 | 2.483788e-49 | -8.615850e-47 |
| Msa0055150 | Msa1408150 | 0.852577 | 4.214376e-61 | -8.615850e-47 |
| Msa0057140 | Msa1408150 | 0.824548 | 7.606217e-54 | -8.615850e-47 |
| Msa0061970 | Msa1408150 | 0.827220 | 1.764296e-54 | -8.615850e-47 |
| Msa0067890 | Msa1408150 | 0.800478 | 1.414589e-48 | -8.615850e-47 |
| Msa0075340 | Msa1408150 | 0.805336 | 1.402358e-49 | -8.615850e-47 |
| Msa0077010 | Msa1408150 | 0.806244 | 9.038387e-50 | -8.615850e-47 |
| Msa0090030 | Msa1408150 | 0.800501 | 1.399391e-48 | -8.615850e-47 |
| Msa0100800 | Msa1408150 | 0.821092 | 4.852512e-53 | -8.615850e-47 |
| Msa0104610 | Msa1408150 | 0.808293 | 3.325608e-50 | -8.615850e-47 |
| Msa0111330 | Msa1408150 | 0.807658 | 4.539293e-50 | -8.615850e-47 |
| Msa0115500 | Msa1408150 | 0.809397 | 1.931118e-50 | -8.615850e-47 |
| Msa1358430 | Msa1408150 | 0.806249 | 9.016330e-50 | -8.615850e-47 |
| Msa1365860 | Msa1408150 | 0.844735 | 6.287212e-59 | -8.615850e-47 |
| Msa1369190 | Msa1408150 | 0.805083 | 1.584389e-49 | -8.615850e-47 |
| Msa1389680 | Msa1408150 | 0.812868 | 3.413404e-51 | -8.615850e-47 |
| Msa1397940 | Msa1408150 | 0.814269 | 1.679054e-51 | -8.615850e-47 |
| Msa1408150 | Msa1438640 | 0.817344 | 3.462091e-52 | -8.615850e-47 |
| Msa1408150 | Msa1452470 | 0.800026 | 1.748109e-48 | -8.615850e-47 |
| Msa1408150 | Msa1462860 | 0.808146 | 3.574957e-50 | -8.615850e-47 |
| Msa0603570 | Msa1408150 | 0.802619 | 5.147788e-49 | -8.615850e-47 |
| Msa0607510 | Msa1408150 | 0.803566 | 3.278919e-49 | -8.615850e-47 |
| Msa0609000 | Msa1408150 | 0.860040 | 2.724147e-63 | -8.615850e-47 |
| Msa0610390 | Msa1408150 | 0.816215 | 6.202898e-52 | -8.615850e-47 |
| Msa0614990 | Msa1408150 | 0.809650 | 1.704104e-50 | -8.615850e-47 |
| Msa0618930 | Msa1408150 | 0.835260 | 1.860891e-56 | -8.615850e-47 |
| Msa0619180 | Msa1408150 | 0.805527 | 1.278572e-49 | -8.615850e-47 |
| Msa0619920 | Msa1408150 | 0.828515 | 8.614014e-55 | -8.615850e-47 |
| Msa0626680 | Msa1408150 | 0.802880 | 4.547385e-49 | -8.615850e-47 |
| Msa0651150 | Msa1408150 | 0.802000 | 6.905695e-49 | -8.615850e-47 |
| Msa0659140 | Msa1408150 | 0.844779 | 6.120452e-59 | -8.615850e-47 |
| Msa0687230 | Msa1408150 | 0.809694 | 1.667529e-50 | -8.615850e-47 |
| Msa0704800 | Msa1408150 | 0.839165 | 1.865460e-57 | -8.615850e-47 |
| Msa0705600 | Msa1408150 | 0.839559 | 1.474024e-57 | -8.615850e-47 |
| Msa0706390 | Msa1408150 | 0.813013 | 3.172228e-51 | -8.615850e-47 |
| Msa0707390 | Msa1408150 | 0.852137 | 5.622028e-61 | -8.615850e-47 |
| Msa0724150 | Msa1408150 | 0.807375 | 5.211722e-50 | -8.615850e-47 |
| Msa0735310 | Msa1408150 | 0.831005 | 2.132723e-55 | -8.615850e-47 |
| Msa0774750 | Msa1408150 | 0.828819 | 7.272356e-55 | -8.615850e-47 |
| Msa0793390 | Msa1408150 | 0.801428 | 9.047650e-49 | -8.615850e-47 |
| Msa0805500 | Msa1408150 | 0.812011 | 5.253522e-51 | -8.615850e-47 |
| Msa0806920 | Msa1408150 | 0.832977 | 6.946212e-56 | -8.615850e-47 |
| Msa0817260 | Msa1408150 | 0.819505 | 1.121419e-52 | -8.615850e-47 |
| Msa0839200 | Msa1408150 | 0.813077 | 3.071550e-51 | -8.615850e-47 |
| Msa0131450 | Msa1408150 | 0.821464 | 3.981229e-53 | -8.615850e-47 |
| Msa0165950 | Msa1408150 | 0.808881 | 2.490856e-50 | -8.615850e-47 |
| Msa0166750 | Msa1408150 | 0.832585 | 8.689987e-56 | -8.615850e-47 |
| Msa0177230 | Msa1408150 | 0.820286 | 7.430915e-53 | -8.615850e-47 |
| Msa0182280 | Msa1408150 | 0.804760 | 1.850131e-49 | -8.615850e-47 |
| Msa0183460 | Msa1408150 | 0.846481 | 2.114063e-59 | -8.615850e-47 |
| Msa0186310 | Msa1408150 | 0.825803 | 3.840246e-54 | -8.615850e-47 |
| Msa0186770 | Msa1408150 | 0.800060 | 1.720509e-48 | -8.615850e-47 |
| Msa1227690 | Msa1408150 | 0.808743 | 2.666201e-50 | -8.615850e-47 |
| Msa1253810 | Msa1408150 | 0.816581 | 5.136868e-52 | -8.615850e-47 |
| Msa1256770 | Msa1408150 | 0.822053 | 2.909328e-53 | -8.615850e-47 |
| Msa1269300 | Msa1408150 | 0.819561 | 1.088523e-52 | -8.615850e-47 |
| Msa1270620 | Msa1408150 | 0.805311 | 1.419503e-49 | -8.615850e-47 |
| Msa1301750 | Msa1408150 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa1317270 | Msa1408150 | 0.802055 | 6.726567e-49 | -8.615850e-47 |
| Msa1331250 | Msa1408150 | 0.808700 | 2.722171e-50 | -8.615850e-47 |
| Msa1331710 | Msa1408150 | 0.829665 | 4.533876e-55 | -8.615850e-47 |
| Msa1340830 | Msa1408150 | 0.803401 | 3.547579e-49 | -8.615850e-47 |
| Msa0384880 | Msa1408150 | 0.813307 | 2.735072e-51 | -8.615850e-47 |
| Msa0386040 | Msa1408150 | 0.822747 | 2.008068e-53 | -8.615850e-47 |
| Msa0387470 | Msa1408150 | 0.801340 | 9.431818e-49 | -8.615850e-47 |
| Msa0387910 | Msa1408150 | 0.814279 | 1.670286e-51 | -8.615850e-47 |
| Msa0392940 | Msa1408150 | 0.802319 | 5.934663e-49 | -8.615850e-47 |
| Msa0419520 | Msa1408150 | 0.845360 | 4.263243e-59 | -8.615850e-47 |
| Msa0439890 | Msa1408150 | 0.804438 | 2.160346e-49 | -8.615850e-47 |
| Msa0465550 | Msa1408150 | 0.805091 | 1.577674e-49 | -8.615850e-47 |
| Msa1001350 | Msa1408150 | 0.816707 | 4.814179e-52 | -8.615850e-47 |
| Msa1025940 | Msa1408150 | 0.852528 | 4.351421e-61 | -8.615850e-47 |
| Msa1026780 | Msa1408150 | 0.806356 | 8.559977e-50 | -8.615850e-47 |
| Msa1029970 | Msa1408150 | 0.809964 | 1.458217e-50 | -8.615850e-47 |
| Msa1040800 | Msa1408150 | 0.808202 | 3.476940e-50 | -8.615850e-47 |
| Msa1073400 | Msa1408150 | 0.831376 | 1.728602e-55 | -8.615850e-47 |
| Msa1083880 | Msa1408150 | 0.803198 | 3.909574e-49 | -8.615850e-47 |
| Msa1089840 | Msa1408150 | 0.825689 | 4.088355e-54 | -8.615850e-47 |
| Msa1093330 | Msa1408150 | 0.817632 | 2.982226e-52 | -8.615850e-47 |
| Msa0239940 | Msa1408150 | 0.815525 | 8.842278e-52 | -8.615850e-47 |
| Msa0245060 | Msa1408150 | 0.810177 | 1.312464e-50 | -8.615850e-47 |
| Msa0280430 | Msa1408150 | 0.804199 | 2.423080e-49 | -8.615850e-47 |
| Msa0291520 | Msa1408150 | 0.834196 | 3.446393e-56 | -8.615850e-47 |
| Msa0308220 | Msa1408150 | 0.830153 | 3.446586e-55 | -8.615850e-47 |
| Msa1122820 | Msa1408150 | 0.811425 | 7.045558e-51 | -8.615850e-47 |
| Msa1126850 | Msa1408150 | 0.827252 | 1.733303e-54 | -8.615850e-47 |
| Msa1131170 | Msa1408150 | 0.822050 | 2.914349e-53 | -8.615850e-47 |
| Msa1138870 | Msa1408150 | 0.800958 | 1.128874e-48 | -8.615850e-47 |
| Msa1166870 | Msa1408150 | 0.805710 | 1.170711e-49 | -8.615850e-47 |
| Msa1184370 | Msa1408150 | 0.807479 | 4.954294e-50 | -8.615850e-47 |
| Msa0493920 | Msa1408150 | 0.829989 | 3.779057e-55 | -8.615850e-47 |
| Msa0523680 | Msa1408150 | 0.830667 | 2.581336e-55 | -8.615850e-47 |
| Msa0527910 | Msa1408150 | 0.808753 | 2.653012e-50 | -8.615850e-47 |
| Msa0550540 | Msa1408150 | 0.810905 | 9.134903e-51 | -8.615850e-47 |
| Msa0550570 | Msa1408150 | 0.821865 | 3.216349e-53 | -8.615850e-47 |
| Msa0580950 | Msa1408150 | 0.981619 | 4.931462e-153 | -8.615850e-47 |
| Msa0583510 | Msa1408150 | 0.812581 | 3.944166e-51 | -8.615850e-47 |
| Msa0879860 | Msa1408150 | 0.809704 | 1.659234e-50 | -8.615850e-47 |
| Msa0895310 | Msa1408150 | 0.804950 | 1.688570e-49 | -8.615850e-47 |
| Msa0901450 | Msa1408150 | 0.821690 | 3.531156e-53 | -8.615850e-47 |
| Msa0924150 | Msa1408150 | -0.822480 | 2.316734e-53 | -8.615850e-47 |
| Msa0933290 | Msa1408150 | 0.828020 | 1.133633e-54 | -8.615850e-47 |
| Msa0960830 | Msa1408150 | 0.825079 | 5.699381e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408150 | MtrunA17_Chr7g0275921 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 4.57e-78 | 224 |
| Msa1408150 | MtrunA17_Chr1g0181591 | 77.273 | 110 | 25 | 0 | 1 | 110 | 1 | 110 | 2.68e-53 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408150 | AT2G35795.1 | 78.571 | 112 | 22 | 1 | 1 | 110 | 1 | 112 | 1.41e-62 | 186 |
| Msa1408150 | AT5G03030.1 | 77.679 | 112 | 23 | 1 | 1 | 110 | 1 | 112 | 3.97e-54 | 165 |
| Msa1408150 | AT5G03030.2 | 77.477 | 111 | 23 | 1 | 2 | 110 | 42 | 152 | 2.85e-53 | 164 |
| Msa1408150 | AT3G09700.1 | 79.787 | 94 | 17 | 1 | 19 | 110 | 19 | 112 | 1.01e-52 | 161 |
Find 48 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACAAAATATACGCATATT+TGG | 0.132252 | tig0023376:+16952 | None:intergenic |
| TTTGGGTCTGATAAAATAAT+TGG | 0.133223 | tig0023376:+16970 | None:intergenic |
| GAAAATGAAGAATTCAAAAT+AGG | 0.316751 | tig0023376:+20189 | None:intergenic |
| ACAGCAATCCCAGCAATTAA+AGG | 0.317983 | tig0023376:+19523 | None:intergenic |
| AAGTCTGAACTGTCGATAAT+TGG | 0.348927 | tig0023376:+17043 | None:intergenic |
| CAGGCTTCACCTTTAATTGC+TGG | 0.363751 | tig0023376:-19532 | Msa1408150:CDS |
| TTGGGTCTGATAAAATAATT+GGG | 0.374418 | tig0023376:+16971 | None:intergenic |
| CAGCTCTTATACTTGGTGTT+AGG | 0.376066 | tig0023376:-19378 | Msa1408150:intron |
| GCAGCATATGCTGGTAAATA+TGG | 0.379014 | tig0023376:-19493 | Msa1408150:CDS |
| CTTTGAATGCTTGCCAAGCC+TGG | 0.382829 | tig0023376:+19467 | None:intergenic |
| TAATGGCTGCCACCAGCATC+TGG | 0.390187 | tig0023376:+17157 | None:intergenic |
| TAATTGGCAGAAAGATTATA+CGG | 0.397951 | tig0023376:+17059 | None:intergenic |
| GACAAAATATACGCATATTT+GGG | 0.411436 | tig0023376:+16953 | None:intergenic |
| GAAGCAAAAGATATGATGAT+TGG | 0.421343 | tig0023376:-17115 | Msa1408150:CDS |
| GTGGCTGCTGCAGCATATGC+TGG | 0.421398 | tig0023376:-19502 | Msa1408150:CDS |
| TAATAATAATTTGAAAACCT+TGG | 0.443987 | tig0023376:+20160 | None:intergenic |
| GCTTCTTTAATCTTATCTGT+TGG | 0.444179 | tig0023376:+17208 | None:intergenic |
| GTGCTAAAGTGGCATAAACT+AGG | 0.463135 | tig0023376:+16850 | None:intergenic |
| TCATTAGAGCTGAGTTGATA+AGG | 0.463445 | tig0023376:-16899 | Msa1408150:three_prime_UTR |
| AGGCTTCACCTTTAATTGCT+GGG | 0.473780 | tig0023376:-19531 | Msa1408150:CDS |
| TCATAAAATTTACGCAATGC+AGG | 0.486334 | tig0023376:+19436 | None:intergenic |
| TGCTGGTAAATATGGTATCC+AGG | 0.489099 | tig0023376:-19485 | Msa1408150:CDS |
| AAATGCTGATCCACCACCCT+TGG | 0.491232 | tig0023376:+17087 | None:intergenic |
| GCTTCCCTCTTCGTCATAGT+AGG | 0.496100 | tig0023376:+19400 | None:intergenic |
| TGCTAAAGTGGCATAAACTA+GGG | 0.497554 | tig0023376:+16851 | None:intergenic |
| GTAAATATGGTATCCAGGCT+TGG | 0.516960 | tig0023376:-19480 | Msa1408150:CDS |
| ATTGGAAAGACCAAGGGTGG+TGG | 0.525296 | tig0023376:-17097 | Msa1408150:CDS |
| GAGTTGATAAGGCAATCAAT+AGG | 0.532682 | tig0023376:-16888 | Msa1408150:three_prime_UTR |
| CATGTTATAGTGTGCTAAAG+TGG | 0.533894 | tig0023376:+16839 | None:intergenic |
| CAGCTCTAATGACACAAGTC+AGG | 0.536542 | tig0023376:+16910 | None:intergenic |
| AGGGAAGCAGCTCTTATACT+TGG | 0.552024 | tig0023376:-19385 | Msa1408150:CDS |
| TTTAATTGCTGGGATTGCTG+TGG | 0.571174 | tig0023376:-19521 | Msa1408150:CDS |
| GTTGCAAACCATCCAGATGC+TGG | 0.574874 | tig0023376:-17169 | Msa1408150:CDS |
| GGCTGCCACCAGCATCTGGA+TGG | 0.580035 | tig0023376:+17161 | None:intergenic |
| TGGGTCTGATAAAATAATTG+GGG | 0.609462 | tig0023376:+16972 | None:intergenic |
| GCTAAAGTGGCATAAACTAG+GGG | 0.611602 | tig0023376:+16852 | None:intergenic |
| AGAAGCACATAGGAGAGTGA+TGG | 0.627347 | tig0023376:-17191 | Msa1408150:CDS |
| TATGATGATTGGAAAGACCA+AGG | 0.628338 | tig0023376:-17104 | Msa1408150:CDS |
| TCAGCCTACTATGACGAAGA+GGG | 0.630053 | tig0023376:-19404 | Msa1408150:CDS |
| TTCAGCCTACTATGACGAAG+AGG | 0.630974 | tig0023376:-19405 | Msa1408150:CDS |
| TAAAATTTACGCAATGCAGG+TGG | 0.638402 | tig0023376:+19439 | None:intergenic |
| ATAAGATTAAAGAAGCACAT+AGG | 0.640913 | tig0023376:-17201 | Msa1408150:CDS |
| ATGATGATTGGAAAGACCAA+GGG | 0.641235 | tig0023376:-17103 | Msa1408150:CDS |
| GGGTCTGATAAAATAATTGG+GGG | 0.645917 | tig0023376:+16973 | None:intergenic |
| CTAAAGTGGCATAAACTAGG+GGG | 0.700913 | tig0023376:+16853 | None:intergenic |
| GGTCTGATAAAATAATTGGG+GGG | 0.702365 | tig0023376:+16974 | None:intergenic |
| ATGATTGGAAAGACCAAGGG+TGG | 0.710004 | tig0023376:-17100 | Msa1408150:CDS |
| GCAAACCATCCAGATGCTGG+TGG | 0.711252 | tig0023376:-17166 | Msa1408150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAAAAAAAAAAAA+AGG | + | tig0023376:17842-17861 | None:intergenic | 0.0% |
| !! | AGTAAGATAAAAAAAAATTA+TGG | + | tig0023376:19785-19804 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGGGAAAA+CGG | + | tig0023376:16769-16788 | None:intergenic | 15.0% |
| !!! | GGGTATTTTTTTTTTTTTTT+GGG | + | tig0023376:16776-16795 | None:intergenic | 15.0% |
| !!! | AGGGTATTTTTTTTTTTTTT+TGG | + | tig0023376:16777-16796 | None:intergenic | 15.0% |
| !! | TAATAATAATTTGAAAACCT+TGG | + | tig0023376:16902-16921 | None:intergenic | 15.0% |
| !!! | TTTTGAATAGAAAAATCAAA+GGG | + | tig0023376:16997-17016 | None:intergenic | 15.0% |
| !!! | GTCAATAAATAAATTTTCAA+AGG | + | tig0023376:17462-17481 | None:intergenic | 15.0% |
| !!! | ATATCTTATTTGATTTTTTC+CGG | + | tig0023376:17780-17799 | None:intergenic | 15.0% |
| !! | ACTATATTAATTATGAATGT+TGG | - | tig0023376:18592-18611 | Msa1408150:intron | 15.0% |
| !! | AACTATATGATTAACAATTA+TGG | - | tig0023376:18748-18767 | Msa1408150:intron | 15.0% |
| !!! | TTTTCTTTTCATGATTAAAA+CGG | - | tig0023376:19180-19199 | Msa1408150:intron | 15.0% |
| !!! | CATGATTTATGAATTTTTTT+TGG | - | tig0023376:19289-19308 | Msa1408150:intron | 15.0% |
| !! | TTATTGTGATTCATTATTAA+CGG | - | tig0023376:19377-19396 | Msa1408150:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGGAAAAC+GGG | + | tig0023376:16768-16787 | None:intergenic | 20.0% |
| !! | GAAAATGAAGAATTCAAAAT+AGG | + | tig0023376:16873-16892 | None:intergenic | 20.0% |
| !! | TTTGAATAGAAAAATCAAAG+GGG | + | tig0023376:16996-17015 | None:intergenic | 20.0% |
| !!! | CTTTTGAATAGAAAAATCAA+AGG | + | tig0023376:16998-17017 | None:intergenic | 20.0% |
| !!! | AGATTAGTTGTTTATTGTAT+TGG | - | tig0023376:17073-17092 | Msa1408150:exon | 20.0% |
| !!! | ATTGGTTTGTTTTATTGTTT+CGG | - | tig0023376:17091-17110 | Msa1408150:CDS | 20.0% |
| !! | TTAAATAAGTCAATCCAAAT+GGG | - | tig0023376:17333-17352 | Msa1408150:intron | 20.0% |
| !! | TTCTAACTATCAATACAATA+AGG | + | tig0023376:17360-17379 | None:intergenic | 20.0% |
| !!! | TTGTATTGATAGTTAGAATT+TGG | - | tig0023376:17362-17381 | Msa1408150:intron | 20.0% |
| !! | ATAATCATGGTATCATAAAA+GGG | + | tig0023376:17412-17431 | None:intergenic | 20.0% |
| !! | AATAATCATGGTATCATAAA+AGG | + | tig0023376:17413-17432 | None:intergenic | 20.0% |
| !!! | TTCAAATTATGTTTCTTTTG+TGG | - | tig0023376:17483-17502 | Msa1408150:intron | 20.0% |
| !!! | TTTTGTTTTGTAAGATTTCA+AGG | - | tig0023376:17713-17732 | Msa1408150:intron | 20.0% |
| !! | TGAATTCATTCATTAAACTA+TGG | - | tig0023376:17863-17882 | Msa1408150:intron | 20.0% |
| !! | AAAGCAAAACAAATAAATTG+AGG | + | tig0023376:17940-17959 | None:intergenic | 20.0% |
| !! | ATTTACTATTAAACATGTCT+AGG | - | tig0023376:18132-18151 | Msa1408150:intron | 20.0% |
| !!! | ATTGATTTACTAATTCTTCT+CGG | + | tig0023376:18386-18405 | None:intergenic | 20.0% |
| !!! | ATACTCCAATGTTTAAAATT+AGG | + | tig0023376:18676-18695 | None:intergenic | 20.0% |
| !! | CAGGAAAATAATTTATAACT+TGG | - | tig0023376:18833-18852 | Msa1408150:intron | 20.0% |
| !!! | TTTCTTTTCATGATTAAAAC+GGG | - | tig0023376:19181-19200 | Msa1408150:intron | 20.0% |
| !!! | TACTGTTTTTTTACTGTTTT+TGG | - | tig0023376:19338-19357 | Msa1408150:intron | 20.0% |
| !! | GTAGGAATACAAAAAATAAA+GGG | + | tig0023376:19526-19545 | None:intergenic | 20.0% |
| !!! | TATGATTTTAGACTTCTAAT+TGG | - | tig0023376:19671-19690 | Msa1408150:intron | 20.0% |
| !!! | ATTATGGTAAATTTTTTGTC+AGG | + | tig0023376:19769-19788 | None:intergenic | 20.0% |
| ! | ATCAATCATTGATAAAACGT+TGG | + | tig0023376:17038-17057 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTATTGTTTC+GGG | - | tig0023376:17092-17111 | Msa1408150:CDS | 25.0% |
| ! | AATATGTAAAATTGAGCTTC+TGG | + | tig0023376:17174-17193 | None:intergenic | 25.0% |
| !! | TGAAAGCACATATAATACAT+GGG | + | tig0023376:17201-17220 | None:intergenic | 25.0% |
| !! | ATGAAAGCACATATAATACA+TGG | + | tig0023376:17202-17221 | None:intergenic | 25.0% |
| ! | CTTAAATAAGTCAATCCAAA+TGG | - | tig0023376:17332-17351 | Msa1408150:intron | 25.0% |
| ! | TAAATAAGTCAATCCAAATG+GGG | - | tig0023376:17334-17353 | Msa1408150:intron | 25.0% |
| !!! | AATTTGGATTTTAGTTTTCC+TGG | - | tig0023376:17378-17397 | Msa1408150:intron | 25.0% |
| ! | TAATCATGGTATCATAAAAG+GGG | + | tig0023376:17411-17430 | None:intergenic | 25.0% |
| ! | TATGATACCATGATTATTGA+AGG | - | tig0023376:17415-17434 | Msa1408150:intron | 25.0% |
| ! | ATGATACCATGATTATTGAA+GGG | - | tig0023376:17416-17435 | Msa1408150:intron | 25.0% |
| ! | ATTCATTCATTAAACTATGG+TGG | - | tig0023376:17866-17885 | Msa1408150:intron | 25.0% |
| ! | AATCAGAAAACATCAGATAT+GGG | + | tig0023376:18086-18105 | None:intergenic | 25.0% |
| ! | AAATCAGAAAACATCAGATA+TGG | + | tig0023376:18087-18106 | None:intergenic | 25.0% |
| ! | TACATGTGTTACATTGAATA+AGG | - | tig0023376:18196-18215 | Msa1408150:intron | 25.0% |
| ! | GAATAAGGATTTGACATTTA+CGG | - | tig0023376:18211-18230 | Msa1408150:intron | 25.0% |
| !! | ATTAATTATACCTTAGGTTG+AGG | - | tig0023376:18540-18559 | Msa1408150:intron | 25.0% |
| !!! | TTAATTATACCTTAGGTTGA+GGG | - | tig0023376:18541-18560 | Msa1408150:intron | 25.0% |
| !!! | TGGAGTATGTCTTTAATTTT+TGG | - | tig0023376:18612-18631 | Msa1408150:intron | 25.0% |
| !! | TTTTCAATTGAACAAAGAAC+TGG | + | tig0023376:18991-19010 | None:intergenic | 25.0% |
| ! | GAAATATAACTACAGATTAC+AGG | + | tig0023376:19049-19068 | None:intergenic | 25.0% |
| !! | TTATATGCATTTTCTTGCAT+TGG | - | tig0023376:19224-19243 | Msa1408150:intron | 25.0% |
| !! | TTCATTTTATTCATAGAGAC+TGG | + | tig0023376:19268-19287 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTACTGTTTTTGG+TGG | - | tig0023376:19341-19360 | Msa1408150:intron | 25.0% |
| !!! | GTTTTTTTACTGTTTTTGGT+GGG | - | tig0023376:19342-19361 | Msa1408150:intron | 25.0% |
| ! | AACAGTAAAAACAGTACATA+AGG | - | tig0023376:19482-19501 | Msa1408150:CDS | 25.0% |
| ! | GGTAGGAATACAAAAAATAA+AGG | + | tig0023376:19527-19546 | None:intergenic | 25.0% |
| !!! | ATTATCCTCATGTTTTTAAG+CGG | + | tig0023376:19637-19656 | None:intergenic | 25.0% |
| !! | ATAAGATTAAAGAAGCACAT+AGG | - | tig0023376:19858-19877 | Msa1408150:intron | 25.0% |
| ! | TAATTGGCAGAAAGATTATA+CGG | + | tig0023376:20003-20022 | None:intergenic | 25.0% |
| ! | TTGGGTCTGATAAAATAATT+GGG | + | tig0023376:20091-20110 | None:intergenic | 25.0% |
| ! | TTTGGGTCTGATAAAATAAT+TGG | + | tig0023376:20092-20111 | None:intergenic | 25.0% |
| ! | GACAAAATATACGCATATTT+GGG | + | tig0023376:20109-20128 | None:intergenic | 25.0% |
| !! | ATTTTGAATTTGAACGTGAT+CGG | - | tig0023376:20244-20263 | Msa1408150:five_prime_UTR | 25.0% |
| GTTCTTGATAGACAGAAAAA+TGG | + | tig0023376:16807-16826 | None:intergenic | 30.0% | |
| ! | TCTTCATTTTCATTTCTCCA+AGG | - | tig0023376:16882-16901 | Msa1408150:three_prime_UTR | 30.0% |
| ACGTTGGACATAGAAAAATA+AGG | + | tig0023376:17022-17041 | None:intergenic | 30.0% | |
| !!! | TGGTTTGTTTTATTGTTTCG+GGG | - | tig0023376:17093-17112 | Msa1408150:CDS | 30.0% |
| CATGAACATATAAGCTCTTA+TGG | - | tig0023376:17219-17238 | Msa1408150:CDS | 30.0% | |
| AATAAGCTGAAAACACCTTA+CGG | - | tig0023376:17243-17262 | Msa1408150:intron | 30.0% | |
| TCATAAAATTTACGCAATGC+AGG | + | tig0023376:17626-17645 | None:intergenic | 30.0% | |
| ! | GCATTGCGTAAATTTTATGA+AGG | - | tig0023376:17626-17645 | Msa1408150:intron | 30.0% |
| ! | TTGCGTAAATTTTATGAAGG+TGG | - | tig0023376:17629-17648 | Msa1408150:intron | 30.0% |
| TAACGAAAGTTGAAAACTAC+CGG | - | tig0023376:17758-17777 | Msa1408150:intron | 30.0% | |
| ! | CATTAAACTATGGTGGAATA+TGG | - | tig0023376:17873-17892 | Msa1408150:intron | 30.0% |
| AGAACTAATATCAGACAGTT+AGG | + | tig0023376:17978-17997 | None:intergenic | 30.0% | |
| TACATTTGACCTTGTCTATT+GGG | + | tig0023376:18169-18188 | None:intergenic | 30.0% | |
| CTAAATCCTAGAAGTTATGT+TGG | - | tig0023376:18280-18299 | Msa1408150:intron | 30.0% | |
| AGAAAACCAACATAACTTCT+AGG | + | tig0023376:18289-18308 | None:intergenic | 30.0% | |
| ! | TATAGTTTCTGGGTAGTATA+AGG | + | tig0023376:18429-18448 | None:intergenic | 30.0% |
| ACTACCCAGAAACTATAATT+TGG | - | tig0023376:18432-18451 | Msa1408150:intron | 30.0% | |
| GTAGCCAAATTATAGTTTCT+GGG | + | tig0023376:18439-18458 | None:intergenic | 30.0% | |
| AGTAGCCAAATTATAGTTTC+TGG | + | tig0023376:18440-18459 | None:intergenic | 30.0% | |
| GAAACTATAATTTGGCTACT+TGG | - | tig0023376:18440-18459 | Msa1408150:intron | 30.0% | |
| !! | CACATTGCTTTTCTTGTTAA+GGG | - | tig0023376:18514-18533 | Msa1408150:intron | 30.0% |
| GGGCTTATTAATTATACCTT+AGG | - | tig0023376:18534-18553 | Msa1408150:intron | 30.0% | |
| !!! | TGGTTTTGTTATATGACTTC+TGG | - | tig0023376:18632-18651 | Msa1408150:intron | 30.0% |
| ! | GCTGTCCTAATTTTAAACAT+TGG | - | tig0023376:18668-18687 | Msa1408150:intron | 30.0% |
| GAAGGAATAACAACATCAAA+TGG | + | tig0023376:18872-18891 | None:intergenic | 30.0% | |
| ! | AGTTATATTTCTGTACTGTC+TGG | - | tig0023376:19058-19077 | Msa1408150:intron | 30.0% |
| ACAAGTACCATTTCTGATTA+TGG | - | tig0023376:19102-19121 | Msa1408150:intron | 30.0% | |
| AAATGAGCCATAATCAGAAA+TGG | + | tig0023376:19112-19131 | None:intergenic | 30.0% | |
| ATTTCTGATTATGGCTCATT+TGG | - | tig0023376:19111-19130 | Msa1408150:intron | 30.0% | |
| ! | TACACTTGCATTGTTATTAG+AGG | - | tig0023376:19457-19476 | Msa1408150:CDS | 30.0% |
| !! | TACATAAGGTACTGTTTCTA+AGG | - | tig0023376:19496-19515 | Msa1408150:CDS | 30.0% |
| ATTAACCGCTTAAAAACATG+AGG | - | tig0023376:19629-19648 | Msa1408150:intron | 30.0% | |
| GCTTCTTTAATCTTATCTGT+TGG | + | tig0023376:19854-19873 | None:intergenic | 30.0% | |
| !! | TGATTTTGGAAGCAAGATAA+TGG | + | tig0023376:19922-19941 | None:intergenic | 30.0% |
| !!! | ATCTTTTGCTTCGTTGATTT+TGG | + | tig0023376:19936-19955 | None:intergenic | 30.0% |
| GAAGCAAAAGATATGATGAT+TGG | - | tig0023376:19944-19963 | Msa1408150:intron | 30.0% | |
| TGGGTCTGATAAAATAATTG+GGG | + | tig0023376:20090-20109 | None:intergenic | 30.0% | |
| CGACAAAATATACGCATATT+TGG | + | tig0023376:20110-20129 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGGGAAAACGGGT+GGG | + | tig0023376:16764-16783 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTGGGAAAACGGG+TGG | + | tig0023376:16765-16784 | None:intergenic | 35.0% |
| CTTGATAGACAGAAAAATGG+AGG | + | tig0023376:16804-16823 | None:intergenic | 35.0% | |
| ! | AACATAGGGTTTTTGCAGAA+CGG | + | tig0023376:16963-16982 | None:intergenic | 35.0% |
| ATAAGCTGAAAACACCTTAC+GGG | - | tig0023376:17244-17263 | Msa1408150:intron | 35.0% | |
| TTTCCAAAAGCTCTCTCAAA+CGG | - | tig0023376:17280-17299 | Msa1408150:intron | 35.0% | |
| TTGAAGGGTGACCTATTTAT+TGG | - | tig0023376:17431-17450 | Msa1408150:intron | 35.0% | |
| TGAAGGGTGACCTATTTATT+GGG | - | tig0023376:17432-17451 | Msa1408150:intron | 35.0% | |
| GTGGAACTGAAATTGAAGTT+TGG | - | tig0023376:17502-17521 | Msa1408150:intron | 35.0% | |
| ! | CTGAAATTGAAGTTTGGAAC+AGG | - | tig0023376:17508-17527 | Msa1408150:intron | 35.0% |
| TAAAATTTACGCAATGCAGG+TGG | + | tig0023376:17623-17642 | None:intergenic | 35.0% | |
| TGGGACATAAACAGATCAAT+GGG | + | tig0023376:18067-18086 | None:intergenic | 35.0% | |
| ATGGGACATAAACAGATCAA+TGG | + | tig0023376:18068-18087 | None:intergenic | 35.0% | |
| CTATTAAACATGTCTAGGTG+AGG | - | tig0023376:18137-18156 | Msa1408150:intron | 35.0% | |
| CTACATTTGACCTTGTCTAT+TGG | + | tig0023376:18170-18189 | None:intergenic | 35.0% | |
| ATTTGACATTTACGGCCATT+CGG | - | tig0023376:18219-18238 | Msa1408150:intron | 35.0% | |
| GAGGTGGTTATAAGAAACAT+GGG | + | tig0023376:18348-18367 | None:intergenic | 35.0% | |
| AGAGGTGGTTATAAGAAACA+TGG | + | tig0023376:18349-18368 | None:intergenic | 35.0% | |
| TTTCTTATAACCACCTCTGT+TGG | - | tig0023376:18351-18370 | Msa1408150:intron | 35.0% | |
| GATTTACTAATTCTTCTCGG+TGG | + | tig0023376:18383-18402 | None:intergenic | 35.0% | |
| TTTCTGGGTAGTATAAGGAT+AGG | + | tig0023376:18424-18443 | None:intergenic | 35.0% | |
| CTGTCGAGAAATGAAAAAAC+AGG | + | tig0023376:18473-18492 | None:intergenic | 35.0% | |
| CCTTAACAAGAAAAGCAATG+TGG | + | tig0023376:18516-18535 | None:intergenic | 35.0% | |
| !! | CCACATTGCTTTTCTTGTTA+AGG | - | tig0023376:18513-18532 | Msa1408150:intron | 35.0% |
| AGCAATCTGAATCAGTTCAA+CGG | + | tig0023376:18806-18825 | None:intergenic | 35.0% | |
| ATTCAGATTGCTGAGAAATC+AGG | - | tig0023376:18814-18833 | Msa1408150:intron | 35.0% | |
| ATCAAGCAAACTAAAGAGGA+AGG | + | tig0023376:18890-18909 | None:intergenic | 35.0% | |
| !! | TTCCTCTTTAGTTTGCTTGA+TGG | - | tig0023376:18889-18908 | Msa1408150:intron | 35.0% |
| GATAAGTCCACTTCAAAAGT+CGG | + | tig0023376:18963-18982 | None:intergenic | 35.0% | |
| AGACTGGATACAATACAACA+TGG | + | tig0023376:19252-19271 | None:intergenic | 35.0% | |
| !!! | TTTTTACTGTTTTTGGTGGG+TGG | - | tig0023376:19345-19364 | Msa1408150:intron | 35.0% |
| AAGTGTTAACAAGATGACGA+GGG | - | tig0023376:19410-19429 | Msa1408150:CDS | 35.0% | |
| ! | TCCTACCTTTTAGACATTCA+TGG | - | tig0023376:19540-19559 | Msa1408150:intron | 35.0% |
| CAAAGTATGAAACACATGCT+CGG | + | tig0023376:19698-19717 | None:intergenic | 35.0% | |
| ! | GTCTGTATTTTCACACTTGT+TGG | - | tig0023376:19717-19736 | Msa1408150:intron | 35.0% |
| !!! | TCTTGCTGATTTTCAACTGT+CGG | - | tig0023376:19804-19823 | Msa1408150:intron | 35.0% |
| TATGATGATTGGAAAGACCA+AGG | - | tig0023376:19955-19974 | Msa1408150:intron | 35.0% | |
| ATGATGATTGGAAAGACCAA+GGG | - | tig0023376:19956-19975 | Msa1408150:intron | 35.0% | |
| AAGTCTGAACTGTCGATAAT+TGG | + | tig0023376:20019-20038 | None:intergenic | 35.0% | |
| GGTCTGATAAAATAATTGGG+GGG | + | tig0023376:20088-20107 | None:intergenic | 35.0% | |
| GGGTCTGATAAAATAATTGG+GGG | + | tig0023376:20089-20108 | None:intergenic | 35.0% | |
| !! | TCATTAGAGCTGAGTTGATA+AGG | - | tig0023376:20160-20179 | Msa1408150:five_prime_UTR | 35.0% |
| !! | GAGTTGATAAGGCAATCAAT+AGG | - | tig0023376:20171-20190 | Msa1408150:five_prime_UTR | 35.0% |
| TGCTAAAGTGGCATAAACTA+GGG | + | tig0023376:20211-20230 | None:intergenic | 35.0% | |
| CATGTTATAGTGTGCTAAAG+TGG | + | tig0023376:20223-20242 | None:intergenic | 35.0% | |
| ACAGAAAAATGGAGGAGGTA+GGG | + | tig0023376:16796-16815 | None:intergenic | 40.0% | |
| GATAGACAGAAAAATGGAGG+AGG | + | tig0023376:16801-16820 | None:intergenic | 40.0% | |
| GCTACGAGGTTAATGATGAA+AGG | + | tig0023376:16938-16957 | None:intergenic | 40.0% | |
| TTTATTGTTTCGGGGTTCTG+AGG | - | tig0023376:17101-17120 | Msa1408150:CDS | 40.0% | |
| TGGCAGAGGGTTTATGAATT+AGG | - | tig0023376:17124-17143 | Msa1408150:CDS | 40.0% | |
| CAATACAATAAGGCCCCATT+TGG | + | tig0023376:17350-17369 | None:intergenic | 40.0% | |
| AGGTCACCCTTCAATAATCA+TGG | + | tig0023376:17425-17444 | None:intergenic | 40.0% | |
| CAAAGGCTCTCCCAATAAAT+AGG | + | tig0023376:17445-17464 | None:intergenic | 40.0% | |
| AGGCTTCACCTTTAATTGCT+GGG | - | tig0023376:17528-17547 | Msa1408150:intron | 40.0% | |
| ACAGCAATCCCAGCAATTAA+AGG | + | tig0023376:17539-17558 | None:intergenic | 40.0% | |
| TTTAATTGCTGGGATTGCTG+TGG | - | tig0023376:17538-17557 | Msa1408150:intron | 40.0% | |
| GCAGCATATGCTGGTAAATA+TGG | - | tig0023376:17566-17585 | Msa1408150:intron | 40.0% | |
| TGCTGGTAAATATGGTATCC+AGG | - | tig0023376:17574-17593 | Msa1408150:intron | 40.0% | |
| GTAAATATGGTATCCAGGCT+TGG | - | tig0023376:17579-17598 | Msa1408150:intron | 40.0% | |
| !! | CAGCTCTTATACTTGGTGTT+AGG | - | tig0023376:17681-17700 | Msa1408150:intron | 40.0% |
| TGAGGTGACTAAAACCAGAA+GGG | + | tig0023376:17922-17941 | None:intergenic | 40.0% | |
| TTGAGGTGACTAAAACCAGA+AGG | + | tig0023376:17923-17942 | None:intergenic | 40.0% | |
| CAGACAGTTAGGAAATGTGA+GGG | + | tig0023376:17967-17986 | None:intergenic | 40.0% | |
| TCAGACAGTTAGGAAATGTG+AGG | + | tig0023376:17968-17987 | None:intergenic | 40.0% | |
| !! | TTGTTGTGTGTTGGTTAGGT+TGG | - | tig0023376:18242-18261 | Msa1408150:intron | 40.0% |
| !! | TGTTGTGTGTTGGTTAGGTT+GGG | - | tig0023376:18243-18262 | Msa1408150:intron | 40.0% |
| TTATAACCACCTCTGTTGGA+AGG | - | tig0023376:18355-18374 | Msa1408150:intron | 40.0% | |
| AGAAAAGCAATGTGGTTGAC+TGG | + | tig0023376:18508-18527 | None:intergenic | 40.0% | |
| CACCATCAAGCAAACTAAAG+AGG | + | tig0023376:18894-18913 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAGTGGACTTATCC+TGG | - | tig0023376:18964-18983 | Msa1408150:intron | 40.0% |
| ATTGAACAAAGAACTGGACC+AGG | + | tig0023376:18985-19004 | None:intergenic | 40.0% | |
| AGCTATCTGAATCTCAACGA+TGG | + | tig0023376:19026-19045 | None:intergenic | 40.0% | |
| TCTGATTATGGCTCATTTGG+TGG | - | tig0023376:19114-19133 | Msa1408150:intron | 40.0% | |
| CAAGTGTTAACAAGATGACG+AGG | - | tig0023376:19409-19428 | Msa1408150:CDS | 40.0% | |
| TTAACAAGATGACGAGGGTT+TGG | - | tig0023376:19415-19434 | Msa1408150:CDS | 40.0% | |
| TAACAAGATGACGAGGGTTT+GGG | - | tig0023376:19416-19435 | Msa1408150:CDS | 40.0% | |
| GCCATGAATGTCTAAAAGGT+AGG | + | tig0023376:19544-19563 | None:intergenic | 40.0% | |
| ! | ACCTTTTAGACATTCATGGC+AGG | - | tig0023376:19544-19563 | Msa1408150:intron | 40.0% |
| ACCTGCCATGAATGTCTAAA+AGG | + | tig0023376:19548-19567 | None:intergenic | 40.0% | |
| CATATTCTGAACTTTGCCTC+AGG | + | tig0023376:19604-19623 | None:intergenic | 40.0% | |
| CTAAAGTGGCATAAACTAGG+GGG | + | tig0023376:20209-20228 | None:intergenic | 40.0% | |
| GCTAAAGTGGCATAAACTAG+GGG | + | tig0023376:20210-20229 | None:intergenic | 40.0% | |
| GTGCTAAAGTGGCATAAACT+AGG | + | tig0023376:20212-20231 | None:intergenic | 40.0% | |
| GACAGAAAAATGGAGGAGGT+AGG | + | tig0023376:16797-16816 | None:intergenic | 45.0% | |
| AGAAAAATCAAAGGGGAGCG+AGG | + | tig0023376:16989-17008 | None:intergenic | 45.0% | |
| ! | AGACCGTTTGAGAGAGCTTT+TGG | + | tig0023376:17286-17305 | None:intergenic | 45.0% |
| ! | CATAAAAGGGGCATATTGCC+AGG | + | tig0023376:17399-17418 | None:intergenic | 45.0% |
| CAGGCTTCACCTTTAATTGC+TGG | - | tig0023376:17527-17546 | Msa1408150:intron | 45.0% | |
| TTCAGCCTACTATGACGAAG+AGG | - | tig0023376:17654-17673 | Msa1408150:intron | 45.0% | |
| TCAGCCTACTATGACGAAGA+GGG | - | tig0023376:17655-17674 | Msa1408150:intron | 45.0% | |
| AGGGAAGCAGCTCTTATACT+TGG | - | tig0023376:17674-17693 | Msa1408150:intron | 45.0% | |
| TGACTAAAACCAGAAGGGGA+GGG | + | tig0023376:17917-17936 | None:intergenic | 45.0% | |
| GAGGTGACTAAAACCAGAAG+GGG | + | tig0023376:17921-17940 | None:intergenic | 45.0% | |
| ! | GAGTCAGTTTTTCCCTGATG+TGG | - | tig0023376:18009-18028 | Msa1408150:intron | 45.0% |
| GCACTCTGTATTCCACATCA+GGG | + | tig0023376:18024-18043 | None:intergenic | 45.0% | |
| AGCACTCTGTATTCCACATC+AGG | + | tig0023376:18025-18044 | None:intergenic | 45.0% | |
| ACCAACACACAACAACCGAA+TGG | + | tig0023376:18237-18256 | None:intergenic | 45.0% | |
| !! | TCGGTTGTTGTGTGTTGGTT+AGG | - | tig0023376:18238-18257 | Msa1408150:intron | 45.0% |
| CAATGTGGTTGACTGGATGA+TGG | + | tig0023376:18501-18520 | None:intergenic | 45.0% | |
| !! | GCAAGTTCCGACTTTTGAAG+TGG | - | tig0023376:18953-18972 | Msa1408150:intron | 45.0% |
| TCTGTACTGTCTGGTCTCTT+CGG | - | tig0023376:19067-19086 | Msa1408150:intron | 45.0% | |
| ! | ATACTTTGGGAGGGAGACAA+AGG | + | tig0023376:19578-19597 | None:intergenic | 45.0% |
| TTGCCTCAGGCACATACTTT+GGG | + | tig0023376:19591-19610 | None:intergenic | 45.0% | |
| TTTGCCTCAGGCACATACTT+TGG | + | tig0023376:19592-19611 | None:intergenic | 45.0% | |
| ! | AGAAGCACATAGGAGAGTGA+TGG | - | tig0023376:19868-19887 | Msa1408150:intron | 45.0% |
| ATGATTGGAAAGACCAAGGG+TGG | - | tig0023376:19959-19978 | Msa1408150:intron | 45.0% | |
| ! | CAGCTCTAATGACACAAGTC+AGG | + | tig0023376:20152-20171 | None:intergenic | 45.0% |
| !! | TCAAATTATTATTATTATTA+TGG | - | tig0023376:16908-16927 | Msa1408150:three_prime_UTR | 5.0% |
| TTTGCAGAACGGAAGCTACG+AGG | + | tig0023376:16952-16971 | None:intergenic | 50.0% | |
| GGGGAGCGAGGAAAAACATA+GGG | + | tig0023376:16977-16996 | None:intergenic | 50.0% | |
| AGGGGAGCGAGGAAAAACAT+AGG | + | tig0023376:16978-16997 | None:intergenic | 50.0% | |
| !! | ATTGTTTCGGGGTTCTGAGG+TGG | - | tig0023376:17104-17123 | Msa1408150:CDS | 50.0% |
| ACAGCTTATGACAGCCCGTA+AGG | + | tig0023376:17261-17280 | None:intergenic | 50.0% | |
| CTTTGAATGCTTGCCAAGCC+TGG | + | tig0023376:17595-17614 | None:intergenic | 50.0% | |
| GCTTCCCTCTTCGTCATAGT+AGG | + | tig0023376:17662-17681 | None:intergenic | 50.0% | |
| GTGACTAAAACCAGAAGGGG+AGG | + | tig0023376:17918-17937 | None:intergenic | 50.0% | |
| AGGCATTCGCCCAATAGACA+AGG | - | tig0023376:18157-18176 | Msa1408150:intron | 50.0% | |
| GCCATTCGGTTGTTGTGTGT+TGG | - | tig0023376:18233-18252 | Msa1408150:intron | 50.0% | |
| !! | TGTGTTGGTTAGGTTGGGAG+AGG | - | tig0023376:18248-18267 | Msa1408150:intron | 50.0% |
| ! | TGGTTGACTGGATGATGGCA+TGG | + | tig0023376:18496-18515 | None:intergenic | 50.0% |
| TCACAATCGCCCTCAACCTA+AGG | + | tig0023376:18553-18572 | None:intergenic | 50.0% | |
| !!! | CTGTTTTTGGTGGGTGGCTA+TGG | - | tig0023376:19351-19370 | Msa1408150:intron | 50.0% |
| !! | TTTTTGGTGGGTGGCTATGG+CGG | - | tig0023376:19354-19373 | Msa1408150:intron | 50.0% |
| ! | CTCAGGCACATACTTTGGGA+GGG | + | tig0023376:19587-19606 | None:intergenic | 50.0% |
| GTTGCAAACCATCCAGATGC+TGG | - | tig0023376:19890-19909 | Msa1408150:intron | 50.0% | |
| ATTGGAAAGACCAAGGGTGG+TGG | - | tig0023376:19962-19981 | Msa1408150:intron | 50.0% | |
| AAATGCTGATCCACCACCCT+TGG | + | tig0023376:19975-19994 | None:intergenic | 50.0% | |
| !! | AGAAGGGGAGGGTATTCGCA+GGG | + | tig0023376:17906-17925 | None:intergenic | 55.0% |
| !! | TGGTTAGGTTGGGAGAGGCT+AGG | - | tig0023376:18253-18272 | Msa1408150:intron | 55.0% |
| GTGGTACCTTCCAACAGAGG+TGG | + | tig0023376:18364-18383 | None:intergenic | 55.0% | |
| TCGGTGGTACCTTCCAACAG+AGG | + | tig0023376:18367-18386 | None:intergenic | 55.0% | |
| TCGGAACTTGCAACACACGC+GGG | + | tig0023376:18944-18963 | None:intergenic | 55.0% | |
| GTCGGAACTTGCAACACACG+CGG | + | tig0023376:18945-18964 | None:intergenic | 55.0% | |
| CCTCAGGCACATACTTTGGG+AGG | + | tig0023376:19588-19607 | None:intergenic | 55.0% | |
| CCTCCCAAAGTATGTGCCTG+AGG | - | tig0023376:19585-19604 | Msa1408150:intron | 55.0% | |
| GCAAACCATCCAGATGCTGG+TGG | - | tig0023376:19893-19912 | Msa1408150:intron | 55.0% | |
| TAATGGCTGCCACCAGCATC+TGG | + | tig0023376:19905-19924 | None:intergenic | 55.0% | |
| GTGGCTGCTGCAGCATATGC+TGG | - | tig0023376:17557-17576 | Msa1408150:intron | 60.0% | |
| !! | CAGAAGGGGAGGGTATTCGC+AGG | + | tig0023376:17907-17926 | None:intergenic | 60.0% |
| CTGCGAATACCCTCCCCTTC+TGG | - | tig0023376:17905-17924 | Msa1408150:intron | 60.0% | |
| CGGAACTTGCAACACACGCG+GGG | + | tig0023376:18943-18962 | None:intergenic | 60.0% | |
| ACGAGGGTTTGGGTCTGACG+TGG | - | tig0023376:19426-19445 | Msa1408150:CDS | 60.0% | |
| !! | TCGGGGTTCTGAGGTGGCAG+AGG | - | tig0023376:17110-17129 | Msa1408150:CDS | 65.0% |
| !! | CGGGGTTCTGAGGTGGCAGA+GGG | - | tig0023376:17111-17130 | Msa1408150:CDS | 65.0% |
| GGCTGCCACCAGCATCTGGA+TGG | + | tig0023376:19901-19920 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023376 | gene | 16760 | 20321 | 16760 | ID=Msa1408150;Name=Msa1408150 |
| tig0023376 | mRNA | 16760 | 20321 | 16760 | ID=Msa1408150-mRNA-1;Parent=Msa1408150;Name=Msa1408150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=167|1|1|1|0.5|0.66|3|324|110 |
| tig0023376 | exon | 16760 | 17240 | 16760 | ID=Msa1408150-mRNA-1:exon:25509;Parent=Msa1408150-mRNA-1 |
| tig0023376 | exon | 19379 | 19551 | 19379 | ID=Msa1408150-mRNA-1:exon:25508;Parent=Msa1408150-mRNA-1 |
| tig0023376 | exon | 20152 | 20321 | 20152 | ID=Msa1408150-mRNA-1:exon:25507;Parent=Msa1408150-mRNA-1 |
| tig0023376 | five_prime_UTR | 20155 | 20321 | 20155 | ID=Msa1408150-mRNA-1:five_prime_utr;Parent=Msa1408150-mRNA-1 |
| tig0023376 | CDS | 20152 | 20154 | 20152 | ID=Msa1408150-mRNA-1:cds;Parent=Msa1408150-mRNA-1 |
| tig0023376 | CDS | 19379 | 19551 | 19379 | ID=Msa1408150-mRNA-1:cds;Parent=Msa1408150-mRNA-1 |
| tig0023376 | CDS | 17084 | 17240 | 17084 | ID=Msa1408150-mRNA-1:cds;Parent=Msa1408150-mRNA-1 |
| tig0023376 | three_prime_UTR | 16760 | 17083 | 16760 | ID=Msa1408150-mRNA-1:three_prime_utr;Parent=Msa1408150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
