Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030260 | XP_039683923.1 | 97.877 | 424 | 9 | 0 | 1 | 424 | 1 | 424 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030260 | sp|Q8H0Z4|GT121_ARATH | 61.871 | 417 | 115 | 7 | 1 | 415 | 3 | 377 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030260 | G7KV66 | 97.877 | 424 | 9 | 0 | 1 | 424 | 1 | 424 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1030260 | 0.822755 | 1.999087e-53 | -8.615850e-47 |
| Msa0076640 | Msa1030260 | 0.823117 | 1.646188e-53 | -8.615850e-47 |
| Msa0092220 | Msa1030260 | 0.817305 | 3.533329e-52 | -8.615850e-47 |
| Msa0612580 | Msa1030260 | 0.822094 | 2.846569e-53 | -8.615850e-47 |
| Msa0612590 | Msa1030260 | 0.853477 | 2.328599e-61 | -8.615850e-47 |
| Msa0695650 | Msa1030260 | 0.824791 | 6.666398e-54 | -8.615850e-47 |
| Msa0177320 | Msa1030260 | 0.827654 | 1.388327e-54 | -8.615850e-47 |
| Msa0224210 | Msa1030260 | 0.835995 | 1.212737e-56 | -8.615850e-47 |
| Msa0390790 | Msa1030260 | 0.837679 | 4.508253e-57 | -8.615850e-47 |
| Msa1030260 | Msa1069270 | 0.843698 | 1.194018e-58 | -8.615850e-47 |
| Msa1030260 | Msa1120560 | 0.895864 | 6.388781e-76 | -8.615850e-47 |
| Msa1030260 | Msa1157130 | 0.914920 | 1.087518e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030260 | MtrunA17_Chr7g0251151 | 97.877 | 424 | 9 | 0 | 1 | 424 | 1 | 424 | 0.0 | 865 |
| Msa1030260 | MtrunA17_Chr1g0209331 | 70.433 | 416 | 119 | 3 | 3 | 415 | 4 | 418 | 0.0 | 622 |
| Msa1030260 | MtrunA17_Chr6g0449141 | 74.866 | 374 | 70 | 8 | 55 | 423 | 1 | 355 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030260 | AT5G38200.1 | 75.118 | 422 | 101 | 3 | 3 | 421 | 11 | 431 | 0.0 | 657 |
| Msa1030260 | AT1G66860.1 | 72.834 | 427 | 110 | 4 | 2 | 424 | 6 | 430 | 0.0 | 641 |
| Msa1030260 | AT5G38200.2 | 77.907 | 344 | 72 | 3 | 3 | 343 | 11 | 353 | 0.0 | 550 |
| Msa1030260 | AT5G38200.3 | 76.791 | 349 | 77 | 3 | 3 | 348 | 11 | 358 | 0.0 | 548 |
| Msa1030260 | AT1G15040.1 | 61.871 | 417 | 115 | 7 | 1 | 415 | 3 | 377 | 0.0 | 519 |
| Msa1030260 | AT1G15040.2 | 67.500 | 320 | 86 | 5 | 1 | 318 | 3 | 306 | 4.51e-156 | 444 |
Find 115 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTATATCTTTCTTTATT+TGG | 0.184895 | 7_1:-64222107 | Msa1030260:three_prime_UTR |
| ATCTTCTCTATAATATTTAT+AGG | 0.187698 | 7_1:+64224425 | None:intergenic |
| ACCTTTGCATCATTGGTTTA+AGG | 0.188726 | 7_1:-64223518 | Msa1030260:CDS |
| AGAGGGGAAAATGGATATTT+TGG | 0.200161 | 7_1:-64223485 | Msa1030260:CDS |
| GTCATAGTTCCACGTGTTTC+CGG | 0.202387 | 7_1:-64223937 | Msa1030260:CDS |
| AGAAGAGGGTAAGTTTATTA+TGG | 0.212954 | 7_1:-64223350 | Msa1030260:CDS |
| AGGTTGCCCCTTTGCTTATC+AGG | 0.214145 | 7_1:-64223269 | Msa1030260:intron |
| TTAAAATTTGGATAAGGATT+AGG | 0.229723 | 7_1:+64224449 | None:intergenic |
| ACAGATTTGTTCTGAAGTTT+TGG | 0.231256 | 7_1:-64222273 | Msa1030260:CDS |
| ATATTTATAGGATTAAAATT+TGG | 0.258197 | 7_1:+64224437 | None:intergenic |
| TTCTTTGGAAGAGGGGAAAA+TGG | 0.263628 | 7_1:-64223494 | Msa1030260:CDS |
| AAAATACACCTTTGCATCAT+TGG | 0.290589 | 7_1:-64223525 | Msa1030260:CDS |
| TAAAATTTGGATAAGGATTA+GGG | 0.293853 | 7_1:+64224450 | None:intergenic |
| TTGTGAGCTCACATTAATAT+AGG | 0.297385 | 7_1:+64224499 | None:intergenic |
| ATAATAAACTTACCCTCTTC+TGG | 0.314503 | 7_1:+64223352 | None:intergenic |
| AAAGCCTCTAAAACTTAATA+AGG | 0.318860 | 7_1:-64222934 | Msa1030260:CDS |
| TCATAGTTCCACGTGTTTCC+GGG | 0.320130 | 7_1:-64223936 | Msa1030260:CDS |
| ATGTTCTGTCACTTACTAAA+TGG | 0.321659 | 7_1:-64221852 | Msa1030260:three_prime_UTR |
| TCATTGGTTTAAGGATTCTT+TGG | 0.326878 | 7_1:-64223509 | Msa1030260:CDS |
| GAAGAGGGTAAGTTTATTAT+GGG | 0.330211 | 7_1:-64223349 | Msa1030260:CDS |
| CTTGTCTTTCTATCACACTA+TGG | 0.360794 | 7_1:-64222297 | Msa1030260:CDS |
| TGAAAGAAACATTCCTTACT+TGG | 0.361983 | 7_1:-64223710 | Msa1030260:CDS |
| TATACATATGATTTATGAAA+TGG | 0.369411 | 7_1:+64222028 | None:intergenic |
| TTCTTGAAGCTCAGATTCCT+TGG | 0.371607 | 7_1:+64222827 | None:intergenic |
| TGTGAGCTCACATTAATATA+GGG | 0.382175 | 7_1:+64224500 | None:intergenic |
| AACCTCTACAATCATGGCCT+TGG | 0.384406 | 7_1:-64222861 | Msa1030260:CDS |
| TCTTCTGGATTATAAGCATC+AGG | 0.386183 | 7_1:+64223367 | None:intergenic |
| CTCCTGATGGTTTGATTGAA+GGG | 0.397165 | 7_1:-64223399 | Msa1030260:CDS |
| ATAGGATTAAAATTTGGATA+AGG | 0.401661 | 7_1:+64224443 | None:intergenic |
| GCTCCTGATGGTTTGATTGA+AGG | 0.402159 | 7_1:-64223400 | Msa1030260:CDS |
| TCTAAAACTTAATAAGGAAA+TGG | 0.405237 | 7_1:-64222928 | Msa1030260:CDS |
| ACCTCTACAATCATGGCCTT+GGG | 0.466208 | 7_1:-64222860 | Msa1030260:CDS |
| TCTGATGAATTTGATTATCC+AGG | 0.473958 | 7_1:-64223289 | Msa1030260:CDS |
| GTTTCTTTCAAGACAAAGCT+TGG | 0.474454 | 7_1:+64223723 | None:intergenic |
| TTGAAGCTCAGATTCCTTGG+TGG | 0.478491 | 7_1:+64222830 | None:intergenic |
| AACCCTTCAATCAAACCATC+AGG | 0.478520 | 7_1:+64223397 | None:intergenic |
| GTTAATAGTTATCATCATCA+AGG | 0.482477 | 7_1:-64223463 | Msa1030260:CDS |
| CGAATTACCTGATAAGCAAA+GGG | 0.482699 | 7_1:+64223262 | None:intergenic |
| AGCAAATGGGTGCAACAGTT+AGG | 0.485989 | 7_1:-64222421 | Msa1030260:CDS |
| CATGTGTAGCACATCAAACT+TGG | 0.487453 | 7_1:+64222160 | None:intergenic |
| CCTCTACAAATTCCCAAGTA+AGG | 0.489708 | 7_1:+64223697 | None:intergenic |
| GTTTAAGGATTCTTTGGAAG+AGG | 0.491298 | 7_1:-64223503 | Msa1030260:CDS |
| TTTAAGGATTCTTTGGAAGA+GGG | 0.492185 | 7_1:-64223502 | Msa1030260:CDS |
| ATAAGGAAATGGAAAACAAA+AGG | 0.493176 | 7_1:-64222917 | Msa1030260:CDS |
| TGATAAGCAAAGGGGCAACC+TGG | 0.504601 | 7_1:+64223271 | None:intergenic |
| CATAGAAGCACACCATGGAT+TGG | 0.515588 | 7_1:+64223886 | None:intergenic |
| AACGAACTTGTTCTTGCGAA+GGG | 0.515604 | 7_1:+64224234 | None:intergenic |
| GAAAGAAACATTCCTTACTT+GGG | 0.524058 | 7_1:-64223709 | Msa1030260:CDS |
| GGTGCAACAGTTAGGAATGC+AGG | 0.528138 | 7_1:-64222413 | Msa1030260:CDS |
| TTAAGGATTCTTTGGAAGAG+GGG | 0.531169 | 7_1:-64223501 | Msa1030260:CDS |
| ATTAACTATGATGATTATGA+TGG | 0.531284 | 7_1:-64223574 | Msa1030260:CDS |
| CAACGAACTTGTTCTTGCGA+AGG | 0.532178 | 7_1:+64224233 | None:intergenic |
| TGCTTATAATAGTGACCAGA+GGG | 0.532781 | 7_1:-64221882 | Msa1030260:three_prime_UTR |
| ACGAACATTTCTTCATAACC+TGG | 0.535426 | 7_1:-64224343 | Msa1030260:five_prime_UTR |
| TTGTCTTTCTATCACACTAT+GGG | 0.536270 | 7_1:-64222296 | Msa1030260:CDS |
| GCTCACATTAATATAGGGAA+TGG | 0.537734 | 7_1:+64224505 | None:intergenic |
| AAGGAATCTGAGCTTCAAGA+AGG | 0.539670 | 7_1:-64222825 | Msa1030260:CDS |
| ACAATGGCTTCCGACCTATC+CGG | 0.540181 | 7_1:-64224292 | Msa1030260:CDS |
| CCTTACTTGGGAATTTGTAG+AGG | 0.541458 | 7_1:-64223697 | Msa1030260:CDS |
| TCGAATTACCTGATAAGCAA+AGG | 0.541505 | 7_1:+64223261 | None:intergenic |
| CCATCAGGAGCAAAAGCCAT+TGG | 0.542834 | 7_1:+64223412 | None:intergenic |
| AGGAATCTGAGCTTCAAGAA+GGG | 0.548439 | 7_1:-64222824 | Msa1030260:CDS |
| CTTGATCTTATAGTCGGCTA+TGG | 0.548943 | 7_1:-64223970 | Msa1030260:CDS |
| AGGAAAAGAGCTTTCAAACA+AGG | 0.550293 | 7_1:-64223626 | Msa1030260:CDS |
| CTTACTTGGGAATTTGTAGA+GGG | 0.563096 | 7_1:-64223696 | Msa1030260:CDS |
| CACATCATGTCTTTCTCAAG+AGG | 0.563983 | 7_1:-64223824 | Msa1030260:CDS |
| AAAACTGCAGGAATTTGTAA+AGG | 0.565853 | 7_1:-64222997 | Msa1030260:intron |
| TCCTTAAACCAATGATGCAA+AGG | 0.567486 | 7_1:+64223517 | None:intergenic |
| AGGGAGAATGCCGGATAGGT+CGG | 0.568641 | 7_1:+64224282 | None:intergenic |
| CATAGCCGACTATAAGATCA+AGG | 0.569028 | 7_1:+64223971 | None:intergenic |
| AAAATGGCAAGAAGTATGAT+GGG | 0.569077 | 7_1:-64222350 | Msa1030260:CDS |
| CAGTTGTTGCTTATCAGAAG+AGG | 0.574778 | 7_1:-64222974 | Msa1030260:CDS |
| GGAATCTGAGCTTCAAGAAG+GGG | 0.577181 | 7_1:-64222823 | Msa1030260:CDS |
| GATTTATGAAATGGATGAAG+TGG | 0.577598 | 7_1:+64222037 | None:intergenic |
| GAGAAGACATTGATCCATCA+TGG | 0.578667 | 7_1:-64223858 | Msa1030260:CDS |
| GGTACTTTATATCAAGACAT+AGG | 0.581651 | 7_1:-64223646 | Msa1030260:CDS |
| ATTTGATGTTGAAGAAAACC+AGG | 0.582413 | 7_1:+64224325 | None:intergenic |
| GATAGCTTTGAACCAATCCA+TGG | 0.584098 | 7_1:-64223898 | Msa1030260:CDS |
| CACGAGGGAGAATGCCGGAT+AGG | 0.585129 | 7_1:+64224278 | None:intergenic |
| GAAACACGTGGAACTATGAC+CGG | 0.585277 | 7_1:+64223940 | None:intergenic |
| CAGAACATACATACTCCCTC+TGG | 0.586065 | 7_1:+64221867 | None:intergenic |
| TAGAACACGAGGGAGAATGC+CGG | 0.587130 | 7_1:+64224273 | None:intergenic |
| TATCACCTTGATCTTATAGT+CGG | 0.588888 | 7_1:-64223976 | Msa1030260:CDS |
| AGAGAGAATGAAGCAGAATG+AGG | 0.589974 | 7_1:-64222381 | Msa1030260:CDS |
| CTTGGTACAAATACTACACA+TGG | 0.591192 | 7_1:+64222178 | None:intergenic |
| CAAAGCTATCTAACAACATG+TGG | 0.591695 | 7_1:+64223911 | None:intergenic |
| TCAAATTCAATCACGTACAA+TGG | 0.592808 | 7_1:-64224308 | Msa1030260:exon |
| GTGTCTTCTTCGTACCATGA+TGG | 0.595392 | 7_1:+64223844 | None:intergenic |
| TCCCAAGGCCATGATTGTAG+AGG | 0.596405 | 7_1:+64222859 | None:intergenic |
| TGATGCTTATAATCCAGAAG+AGG | 0.598955 | 7_1:-64223365 | Msa1030260:CDS |
| CATAGTTCCACGTGTTTCCG+GGG | 0.599219 | 7_1:-64223935 | Msa1030260:CDS |
| CCTTGGTGGAGCTCATCCCA+AGG | 0.600424 | 7_1:+64222844 | None:intergenic |
| GGAAAAGAGCTTTCAAACAA+GGG | 0.608474 | 7_1:-64223625 | Msa1030260:CDS |
| ATGGTCAACAATAGACAAAG+AGG | 0.612299 | 7_1:+64222197 | None:intergenic |
| GATGCTTATAATCCAGAAGA+GGG | 0.613931 | 7_1:-64223364 | Msa1030260:CDS |
| ATCTAACAACATGTGGACCC+CGG | 0.615605 | 7_1:+64223918 | None:intergenic |
| CTAGAAACTATTAGAACACG+AGG | 0.624352 | 7_1:+64224262 | None:intergenic |
| CTTCTAAATGTGGCATGTGG+AGG | 0.629521 | 7_1:-64223667 | Msa1030260:CDS |
| ATGTGGACCCCGGAAACACG+TGG | 0.632453 | 7_1:+64223928 | None:intergenic |
| AATGTGAGCTCACAAAACAA+TGG | 0.634611 | 7_1:-64224491 | Msa1030260:five_prime_UTR |
| ATTTATGAAATGGATGAAGT+GGG | 0.635214 | 7_1:+64222038 | None:intergenic |
| CAACTTCTAAATGTGGCATG+TGG | 0.641956 | 7_1:-64223670 | Msa1030260:CDS |
| TTGCTTATAATAGTGACCAG+AGG | 0.642247 | 7_1:-64221883 | Msa1030260:three_prime_UTR |
| AGAAGGGGCAGAGTTTCTAG+AGG | 0.642561 | 7_1:-64222808 | Msa1030260:intron |
| CTTCTGGATTATAAGCATCA+GGG | 0.643591 | 7_1:+64223368 | None:intergenic |
| AGGGTCACAACTTCTAAATG+TGG | 0.648276 | 7_1:-64223677 | Msa1030260:CDS |
| TCAACAATAGACAAAGAGGT+AGG | 0.653172 | 7_1:+64222201 | None:intergenic |
| CCTTGGGATGAGCTCCACCA+AGG | 0.671030 | 7_1:-64222844 | Msa1030260:CDS |
| TCTTATAGTCGGCTATGGCG+CGG | 0.674953 | 7_1:-64223965 | Msa1030260:CDS |
| CATGGTGTGCTTCTATGTGA+AGG | 0.682068 | 7_1:-64223880 | Msa1030260:CDS |
| GAATTACCTGATAAGCAAAG+GGG | 0.690603 | 7_1:+64223263 | None:intergenic |
| TTATGATGGTCATAGACATG+AGG | 0.696322 | 7_1:-64223560 | Msa1030260:CDS |
| CTTCACATAGAAGCACACCA+TGG | 0.698034 | 7_1:+64223881 | None:intergenic |
| AGATATAACACAAAAGTACG+AGG | 0.738665 | 7_1:+64222119 | None:intergenic |
| TAGAAACTATTAGAACACGA+GGG | 0.757631 | 7_1:+64224263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATAGGATTAAAATT+TGG | + | chr7_1:64221930-64221949 | None:intergenic | 10.0% |
| !! | TAAATATATCAATACATTAA+AGG | + | chr7_1:64223865-64223884 | None:intergenic | 10.0% |
| !! | ATCTTCTCTATAATATTTAT+AGG | + | chr7_1:64221942-64221961 | None:intergenic | 15.0% |
| !!! | ATTACATGATTATTGTTTTT+AGG | - | chr7_1:64222361-64222380 | Msa1030260:CDS | 15.0% |
| !! | ATGTGAAATTTAATTGATAT+AGG | + | chr7_1:64223838-64223857 | None:intergenic | 15.0% |
| !! | TATACATATGATTTATGAAA+TGG | + | chr7_1:64224339-64224358 | None:intergenic | 15.0% |
| !! | TAAAATTTGGATAAGGATTA+GGG | + | chr7_1:64221917-64221936 | None:intergenic | 20.0% |
| !! | TTAAAATTTGGATAAGGATT+AGG | + | chr7_1:64221918-64221937 | None:intergenic | 20.0% |
| !! | ATAGGATTAAAATTTGGATA+AGG | + | chr7_1:64221924-64221943 | None:intergenic | 20.0% |
| !! | ATCATTCAATATGAATTCTA+AGG | - | chr7_1:64222205-64222224 | Msa1030260:three_prime_UTR | 20.0% |
| !! | ATTAACTATGATGATTATGA+TGG | - | chr7_1:64222790-64222809 | Msa1030260:intron | 20.0% |
| !!! | CTAAATTGATAGTTTATTTC+CGG | + | chr7_1:64223131-64223150 | None:intergenic | 20.0% |
| !! | ATAGTACTATTTCCATTTAT+TGG | - | chr7_1:64223203-64223222 | Msa1030260:intron | 20.0% |
| !! | ACTAGTCAATAATAATGTAT+TGG | + | chr7_1:64223318-64223337 | None:intergenic | 20.0% |
| !!! | ATTTCCTTATTAAGTTTTAG+AGG | + | chr7_1:64223437-64223456 | None:intergenic | 20.0% |
| !!! | TCTAAAACTTAATAAGGAAA+TGG | - | chr7_1:64223436-64223455 | Msa1030260:CDS | 20.0% |
| !! | ATTGATATAGGTACTAAAAT+CGG | + | chr7_1:64223826-64223845 | None:intergenic | 20.0% |
| !! | GTGTTATATCTTTCTTTATT+TGG | - | chr7_1:64224257-64224276 | Msa1030260:CDS | 20.0% |
| !!! | TAAGCAAAAGTTGATTTTTT+AGG | + | chr7_1:64224468-64224487 | None:intergenic | 20.0% |
| ! | ATTCATCTCATAGAAACAAT+AGG | + | chr7_1:64222258-64222277 | None:intergenic | 25.0% |
| ! | TCTTCATCTATTTGATTATG+TGG | - | chr7_1:64222277-64222296 | Msa1030260:CDS | 25.0% |
| ! | TAACAAGATCGATAAAAAAG+AGG | + | chr7_1:64222335-64222354 | None:intergenic | 25.0% |
| ! | GTTAATAGTTATCATCATCA+AGG | - | chr7_1:64222901-64222920 | Msa1030260:CDS | 25.0% |
| ! | TACTATTTCCATTTATTGGA+GGG | - | chr7_1:64223207-64223226 | Msa1030260:intron | 25.0% |
| !!! | AAAGCCTCTAAAACTTAATA+AGG | - | chr7_1:64223430-64223449 | Msa1030260:CDS | 25.0% |
| ! | ATAAGGAAATGGAAAACAAA+AGG | - | chr7_1:64223447-64223466 | Msa1030260:CDS | 25.0% |
| ! | GTGATGCTACATAAAAAATA+AGG | + | chr7_1:64223613-64223632 | None:intergenic | 25.0% |
| ! | GACACTAATATTTACATGTT+TGG | + | chr7_1:64223663-64223682 | None:intergenic | 25.0% |
| !! | ATAGGAATGTGATAGTTTTT+AGG | - | chr7_1:64223736-64223755 | Msa1030260:CDS | 25.0% |
| ! | AGAAAAAAGGTTAAAGCAAA+TGG | - | chr7_1:64223929-64223948 | Msa1030260:CDS | 25.0% |
| ! | GAAAAAAGGTTAAAGCAAAT+GGG | - | chr7_1:64223930-64223949 | Msa1030260:CDS | 25.0% |
| ! | GAATGAGGAAAAAGAAAAAA+TGG | - | chr7_1:64223998-64224017 | Msa1030260:intron | 25.0% |
| ! | ATTTATGAAATGGATGAAGT+GGG | + | chr7_1:64224329-64224348 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr7_1:64224405-64224424 | None:intergenic | 25.0% |
| TGTGAGCTCACATTAATATA+GGG | + | chr7_1:64221867-64221886 | None:intergenic | 30.0% | |
| TTGTGAGCTCACATTAATAT+AGG | + | chr7_1:64221868-64221887 | None:intergenic | 30.0% | |
| ATGTTCGTGTGATAAAAATG+TGG | + | chr7_1:64222009-64222028 | None:intergenic | 30.0% | |
| ATTTGATGTTGAAGAAAACC+AGG | + | chr7_1:64222042-64222061 | None:intergenic | 30.0% | |
| TCAAATTCAATCACGTACAA+TGG | - | chr7_1:64222056-64222075 | Msa1030260:three_prime_UTR | 30.0% | |
| TAGAAACTATTAGAACACGA+GGG | + | chr7_1:64222104-64222123 | None:intergenic | 30.0% | |
| !!! | AACAAGTTCGTTGATTTTGT+TGG | - | chr7_1:64222141-64222160 | Msa1030260:three_prime_UTR | 30.0% |
| TATCACCTTGATCTTATAGT+CGG | - | chr7_1:64222388-64222407 | Msa1030260:CDS | 30.0% | |
| TGAAAGAAACATTCCTTACT+TGG | - | chr7_1:64222654-64222673 | Msa1030260:intron | 30.0% | |
| GAAAGAAACATTCCTTACTT+GGG | - | chr7_1:64222655-64222674 | Msa1030260:intron | 30.0% | |
| GGTACTTTATATCAAGACAT+AGG | - | chr7_1:64222718-64222737 | Msa1030260:intron | 30.0% | |
| AAAATACACCTTTGCATCAT+TGG | - | chr7_1:64222839-64222858 | Msa1030260:CDS | 30.0% | |
| !! | TCATTGGTTTAAGGATTCTT+TGG | - | chr7_1:64222855-64222874 | Msa1030260:CDS | 30.0% |
| ! | TTTAAGGATTCTTTGGAAGA+GGG | - | chr7_1:64222862-64222881 | Msa1030260:CDS | 30.0% |
| ATAATAAACTTACCCTCTTC+TGG | + | chr7_1:64223015-64223034 | None:intergenic | 30.0% | |
| AGAAGAGGGTAAGTTTATTA+TGG | - | chr7_1:64223014-64223033 | Msa1030260:intron | 30.0% | |
| GAAGAGGGTAAGTTTATTAT+GGG | - | chr7_1:64223015-64223034 | Msa1030260:intron | 30.0% | |
| TCTGATGAATTTGATTATCC+AGG | - | chr7_1:64223075-64223094 | Msa1030260:intron | 30.0% | |
| GTACTATTTCCATTTATTGG+AGG | - | chr7_1:64223206-64223225 | Msa1030260:intron | 30.0% | |
| CAAAATTCATGAAAAACTGC+AGG | - | chr7_1:64223355-64223374 | Msa1030260:CDS | 30.0% | |
| AAAACTGCAGGAATTTGTAA+AGG | - | chr7_1:64223367-64223386 | Msa1030260:CDS | 30.0% | |
| GTAAATATTAGTGTCGTGTT+CGG | - | chr7_1:64223668-64223687 | Msa1030260:CDS | 30.0% | |
| CGAATTAACTTATGAAGTAC+TGG | + | chr7_1:64223702-64223721 | None:intergenic | 30.0% | |
| ! | AAAAATGGCAAGAAGTATGA+TGG | - | chr7_1:64224013-64224032 | Msa1030260:intron | 30.0% |
| ! | AAAATGGCAAGAAGTATGAT+GGG | - | chr7_1:64224014-64224033 | Msa1030260:intron | 30.0% |
| ! | TATGATGGGAAAAATGTCAA+TGG | - | chr7_1:64224028-64224047 | Msa1030260:intron | 30.0% |
| TTGTCTTTCTATCACACTAT+GGG | - | chr7_1:64224068-64224087 | Msa1030260:intron | 30.0% | |
| !!! | ACAGATTTGTTCTGAAGTTT+TGG | - | chr7_1:64224091-64224110 | Msa1030260:intron | 30.0% |
| ! | AGATATAACACAAAAGTACG+AGG | + | chr7_1:64224248-64224267 | None:intergenic | 30.0% |
| GATTTATGAAATGGATGAAG+TGG | + | chr7_1:64224330-64224349 | None:intergenic | 30.0% | |
| ! | CTTTTGCTTATAATAGTGAC+TGG | + | chr7_1:64224478-64224497 | None:intergenic | 30.0% |
| ! | ATGTTCTGTCACTTACTAAA+TGG | - | chr7_1:64224512-64224531 | Msa1030260:five_prime_UTR | 30.0% |
| GCTCACATTAATATAGGGAA+TGG | + | chr7_1:64221862-64221881 | None:intergenic | 35.0% | |
| AATGTGAGCTCACAAAACAA+TGG | - | chr7_1:64221873-64221892 | Msa1030260:three_prime_UTR | 35.0% | |
| ACGAACATTTCTTCATAACC+TGG | - | chr7_1:64222021-64222040 | Msa1030260:intron | 35.0% | |
| CTAGAAACTATTAGAACACG+AGG | + | chr7_1:64222105-64222124 | None:intergenic | 35.0% | |
| CAAAGCTATCTAACAACATG+TGG | + | chr7_1:64222456-64222475 | None:intergenic | 35.0% | |
| GTTTCTTTCAAGACAAAGCT+TGG | + | chr7_1:64222644-64222663 | None:intergenic | 35.0% | |
| CTTACTTGGGAATTTGTAGA+GGG | - | chr7_1:64222668-64222687 | Msa1030260:intron | 35.0% | |
| AGGAAAAGAGCTTTCAAACA+AGG | - | chr7_1:64222738-64222757 | Msa1030260:intron | 35.0% | |
| GGAAAAGAGCTTTCAAACAA+GGG | - | chr7_1:64222739-64222758 | Msa1030260:intron | 35.0% | |
| TTATGATGGTCATAGACATG+AGG | - | chr7_1:64222804-64222823 | Msa1030260:intron | 35.0% | |
| !! | ACCTTTGCATCATTGGTTTA+AGG | - | chr7_1:64222846-64222865 | Msa1030260:CDS | 35.0% |
| TCCTTAAACCAATGATGCAA+AGG | + | chr7_1:64222850-64222869 | None:intergenic | 35.0% | |
| ! | GTTTAAGGATTCTTTGGAAG+AGG | - | chr7_1:64222861-64222880 | Msa1030260:CDS | 35.0% |
| ! | TTAAGGATTCTTTGGAAGAG+GGG | - | chr7_1:64222863-64222882 | Msa1030260:CDS | 35.0% |
| ! | AGAGGGGAAAATGGATATTT+TGG | - | chr7_1:64222879-64222898 | Msa1030260:CDS | 35.0% |
| CTTCTGGATTATAAGCATCA+GGG | + | chr7_1:64222999-64223018 | None:intergenic | 35.0% | |
| TCTTCTGGATTATAAGCATC+AGG | + | chr7_1:64223000-64223019 | None:intergenic | 35.0% | |
| TGATGCTTATAATCCAGAAG+AGG | - | chr7_1:64222999-64223018 | Msa1030260:intron | 35.0% | |
| GATGCTTATAATCCAGAAGA+GGG | - | chr7_1:64223000-64223019 | Msa1030260:intron | 35.0% | |
| GAATTACCTGATAAGCAAAG+GGG | + | chr7_1:64223104-64223123 | None:intergenic | 35.0% | |
| CGAATTACCTGATAAGCAAA+GGG | + | chr7_1:64223105-64223124 | None:intergenic | 35.0% | |
| TCGAATTACCTGATAAGCAA+AGG | + | chr7_1:64223106-64223125 | None:intergenic | 35.0% | |
| CTTATCAGGTAATTCGAAAC+CGG | - | chr7_1:64223109-64223128 | Msa1030260:intron | 35.0% | |
| TACATTGTCCCTCCAATAAA+TGG | + | chr7_1:64223218-64223237 | None:intergenic | 35.0% | |
| ATTTATTGGAGGGACAATGT+AGG | - | chr7_1:64223217-64223236 | Msa1030260:intron | 35.0% | |
| GCAAAAAACCTCTACAATCA+TGG | - | chr7_1:64223497-64223516 | Msa1030260:CDS | 35.0% | |
| GATATAGGTACTAAAATCGG+TGG | + | chr7_1:64223823-64223842 | None:intergenic | 35.0% | |
| CTTGTCTTTCTATCACACTA+TGG | - | chr7_1:64224067-64224086 | Msa1030260:intron | 35.0% | |
| TCAACAATAGACAAAGAGGT+AGG | + | chr7_1:64224166-64224185 | None:intergenic | 35.0% | |
| ATGGTCAACAATAGACAAAG+AGG | + | chr7_1:64224170-64224189 | None:intergenic | 35.0% | |
| CTTGGTACAAATACTACACA+TGG | + | chr7_1:64224189-64224208 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | - | chr7_1:64224481-64224500 | Msa1030260:five_prime_UTR | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | - | chr7_1:64224482-64224501 | Msa1030260:five_prime_UTR | 35.0% | |
| ! | AACGAACTTGTTCTTGCGAA+GGG | + | chr7_1:64222133-64222152 | None:intergenic | 40.0% |
| CATAGCCGACTATAAGATCA+AGG | + | chr7_1:64222396-64222415 | None:intergenic | 40.0% | |
| CTTGATCTTATAGTCGGCTA+TGG | - | chr7_1:64222394-64222413 | Msa1030260:CDS | 40.0% | |
| !! | GATAGCTTTGAACCAATCCA+TGG | - | chr7_1:64222466-64222485 | Msa1030260:intron | 40.0% |
| GAGAAGACATTGATCCATCA+TGG | - | chr7_1:64222506-64222525 | Msa1030260:intron | 40.0% | |
| CACATCATGTCTTTCTCAAG+AGG | - | chr7_1:64222540-64222559 | Msa1030260:intron | 40.0% | |
| CCTCTACAAATTCCCAAGTA+AGG | + | chr7_1:64222670-64222689 | None:intergenic | 40.0% | |
| CCTTACTTGGGAATTTGTAG+AGG | - | chr7_1:64222667-64222686 | Msa1030260:intron | 40.0% | |
| AGGGTCACAACTTCTAAATG+TGG | - | chr7_1:64222687-64222706 | Msa1030260:intron | 40.0% | |
| CAACTTCTAAATGTGGCATG+TGG | - | chr7_1:64222694-64222713 | Msa1030260:intron | 40.0% | |
| ! | TTCTTTGGAAGAGGGGAAAA+TGG | - | chr7_1:64222870-64222889 | Msa1030260:CDS | 40.0% |
| !! | TGCACAACGTTTTGTTCCAA+TGG | - | chr7_1:64222936-64222955 | Msa1030260:CDS | 40.0% |
| CTCCTGATGGTTTGATTGAA+GGG | - | chr7_1:64222965-64222984 | Msa1030260:CDS | 40.0% | |
| AACCCTTCAATCAAACCATC+AGG | + | chr7_1:64222970-64222989 | None:intergenic | 40.0% | |
| ! | ATCAGCTTTTCTCATACGCT+CGG | + | chr7_1:64223055-64223074 | None:intergenic | 40.0% |
| ! | CAGTTGTTGCTTATCAGAAG+AGG | - | chr7_1:64223390-64223409 | Msa1030260:CDS | 40.0% |
| !! | TTTTAGAGGCTTTTGCACAG+AGG | + | chr7_1:64223423-64223442 | None:intergenic | 40.0% |
| TTCTTGAAGCTCAGATTCCT+TGG | + | chr7_1:64223540-64223559 | None:intergenic | 40.0% | |
| AAGGAATCTGAGCTTCAAGA+AGG | - | chr7_1:64223539-64223558 | Msa1030260:CDS | 40.0% | |
| AGGAATCTGAGCTTCAAGAA+GGG | - | chr7_1:64223540-64223559 | Msa1030260:CDS | 40.0% | |
| ! | TTTTTCTTGCTGCACACTCA+AGG | + | chr7_1:64223916-64223935 | None:intergenic | 40.0% |
| TGAGTGTGCAGCAAGAAAAA+AGG | - | chr7_1:64223916-64223935 | Msa1030260:CDS | 40.0% | |
| AGAGAGAATGAAGCAGAATG+AGG | - | chr7_1:64223983-64224002 | Msa1030260:CDS | 40.0% | |
| CATGTGTAGCACATCAAACT+TGG | + | chr7_1:64224207-64224226 | None:intergenic | 40.0% | |
| ! | CAACGAACTTGTTCTTGCGA+AGG | + | chr7_1:64222134-64222153 | None:intergenic | 45.0% |
| GAAACACGTGGAACTATGAC+CGG | + | chr7_1:64222427-64222446 | None:intergenic | 45.0% | |
| GTCATAGTTCCACGTGTTTC+CGG | - | chr7_1:64222427-64222446 | Msa1030260:CDS | 45.0% | |
| TCATAGTTCCACGTGTTTCC+GGG | - | chr7_1:64222428-64222447 | Msa1030260:CDS | 45.0% | |
| ATCTAACAACATGTGGACCC+CGG | + | chr7_1:64222449-64222468 | None:intergenic | 45.0% | |
| ! | CATAGAAGCACACCATGGAT+TGG | + | chr7_1:64222481-64222500 | None:intergenic | 45.0% |
| ! | CTTCACATAGAAGCACACCA+TGG | + | chr7_1:64222486-64222505 | None:intergenic | 45.0% |
| CATGGTGTGCTTCTATGTGA+AGG | - | chr7_1:64222484-64222503 | Msa1030260:intron | 45.0% | |
| GTGTCTTCTTCGTACCATGA+TGG | + | chr7_1:64222523-64222542 | None:intergenic | 45.0% | |
| CTTCTAAATGTGGCATGTGG+AGG | - | chr7_1:64222697-64222716 | Msa1030260:intron | 45.0% | |
| GCTCCTGATGGTTTGATTGA+AGG | - | chr7_1:64222964-64222983 | Msa1030260:CDS | 45.0% | |
| ! | TCAGCTTTTCTCATACGCTC+GGG | + | chr7_1:64223054-64223073 | None:intergenic | 45.0% |
| GAGGGACAATGTAGGACAAA+TGG | - | chr7_1:64223225-64223244 | Msa1030260:intron | 45.0% | |
| AACCTCTACAATCATGGCCT+TGG | - | chr7_1:64223503-64223522 | Msa1030260:CDS | 45.0% | |
| ACCTCTACAATCATGGCCTT+GGG | - | chr7_1:64223504-64223523 | Msa1030260:CDS | 45.0% | |
| TTGAAGCTCAGATTCCTTGG+TGG | + | chr7_1:64223537-64223556 | None:intergenic | 45.0% | |
| GGAATCTGAGCTTCAAGAAG+GGG | - | chr7_1:64223541-64223560 | Msa1030260:CDS | 45.0% | |
| TTCGTGATGTGCTGCATCAT+AGG | - | chr7_1:64223718-64223737 | Msa1030260:CDS | 45.0% | |
| ATCGGTGGAAGAAATCTCGA+GGG | + | chr7_1:64223808-64223827 | None:intergenic | 45.0% | |
| AATCGGTGGAAGAAATCTCG+AGG | + | chr7_1:64223809-64223828 | None:intergenic | 45.0% | |
| AGCAAATGGGTGCAACAGTT+AGG | - | chr7_1:64223943-64223962 | Msa1030260:CDS | 45.0% | |
| CAGAACATACATACTCCCTC+TGG | + | chr7_1:64224500-64224519 | None:intergenic | 45.0% | |
| ACAATGGCTTCCGACCTATC+CGG | - | chr7_1:64222072-64222091 | Msa1030260:three_prime_UTR | 50.0% | |
| TAGAACACGAGGGAGAATGC+CGG | + | chr7_1:64222094-64222113 | None:intergenic | 50.0% | |
| TCTTATAGTCGGCTATGGCG+CGG | - | chr7_1:64222399-64222418 | Msa1030260:CDS | 50.0% | |
| CATAGTTCCACGTGTTTCCG+GGG | - | chr7_1:64222429-64222448 | Msa1030260:CDS | 50.0% | |
| CCATCAGGAGCAAAAGCCAT+TGG | + | chr7_1:64222955-64222974 | None:intergenic | 50.0% | |
| ! | CCAATGGCTTTTGCTCCTGA+TGG | - | chr7_1:64222952-64222971 | Msa1030260:CDS | 50.0% |
| TGATAAGCAAAGGGGCAACC+TGG | + | chr7_1:64223096-64223115 | None:intergenic | 50.0% | |
| AGGTTGCCCCTTTGCTTATC+AGG | - | chr7_1:64223095-64223114 | Msa1030260:intron | 50.0% | |
| TCCCAAGGCCATGATTGTAG+AGG | + | chr7_1:64223508-64223527 | None:intergenic | 50.0% | |
| ! | AGAAGGGGCAGAGTTTCTAG+AGG | - | chr7_1:64223556-64223575 | Msa1030260:CDS | 50.0% |
| TCGGTGGAAGAAATCTCGAG+GGG | + | chr7_1:64223807-64223826 | None:intergenic | 50.0% | |
| GGTGCAACAGTTAGGAATGC+AGG | - | chr7_1:64223951-64223970 | Msa1030260:CDS | 50.0% | |
| AGGGAGAATGCCGGATAGGT+CGG | + | chr7_1:64222085-64222104 | None:intergenic | 55.0% | |
| CACGAGGGAGAATGCCGGAT+AGG | + | chr7_1:64222089-64222108 | None:intergenic | 60.0% | |
| ATGTGGACCCCGGAAACACG+TGG | + | chr7_1:64222439-64222458 | None:intergenic | 60.0% | |
| CCTTGGTGGAGCTCATCCCA+AGG | + | chr7_1:64223523-64223542 | None:intergenic | 60.0% | |
| CCTTGGGATGAGCTCCACCA+AGG | - | chr7_1:64223520-64223539 | Msa1030260:CDS | 60.0% | |
| AGTCGGCTATGGCGCGGTAC+CGG | - | chr7_1:64222405-64222424 | Msa1030260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 64221830 | 64224556 | 64221830 | ID=Msa1030260;Name=Msa1030260 |
| chr7_1 | mRNA | 64221830 | 64224556 | 64221830 | ID=Msa1030260-mRNA-1;Parent=Msa1030260;Name=Msa1030260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=245|1|1|1|0.75|0.6|5|297|424 |
| chr7_1 | exon | 64221830 | 64221927 | 64221830 | ID=Msa1030260-mRNA-1:exon:14033;Parent=Msa1030260-mRNA-1 |
| chr7_1 | exon | 64222033 | 64222483 | 64222033 | ID=Msa1030260-mRNA-1:exon:14032;Parent=Msa1030260-mRNA-1 |
| chr7_1 | exon | 64222809 | 64223009 | 64222809 | ID=Msa1030260-mRNA-1:exon:14031;Parent=Msa1030260-mRNA-1 |
| chr7_1 | exon | 64223270 | 64224003 | 64223270 | ID=Msa1030260-mRNA-1:exon:14030;Parent=Msa1030260-mRNA-1 |
| chr7_1 | exon | 64224224 | 64224556 | 64224224 | ID=Msa1030260-mRNA-1:exon:14029;Parent=Msa1030260-mRNA-1 |
| chr7_1 | five_prime_UTR | 64224312 | 64224556 | 64224312 | ID=Msa1030260-mRNA-1:five_prime_utr;Parent=Msa1030260-mRNA-1 |
| chr7_1 | CDS | 64224224 | 64224311 | 64224224 | ID=Msa1030260-mRNA-1:cds;Parent=Msa1030260-mRNA-1 |
| chr7_1 | CDS | 64223270 | 64224003 | 64223270 | ID=Msa1030260-mRNA-1:cds;Parent=Msa1030260-mRNA-1 |
| chr7_1 | CDS | 64222809 | 64223009 | 64222809 | ID=Msa1030260-mRNA-1:cds;Parent=Msa1030260-mRNA-1 |
| chr7_1 | CDS | 64222232 | 64222483 | 64222232 | ID=Msa1030260-mRNA-1:cds;Parent=Msa1030260-mRNA-1 |
| chr7_1 | three_prime_UTR | 64222033 | 64222231 | 64222033 | ID=Msa1030260-mRNA-1:three_prime_utr;Parent=Msa1030260-mRNA-1 |
| chr7_1 | three_prime_UTR | 64221830 | 64221927 | 64221830 | ID=Msa1030260-mRNA-1:three_prime_utr;Parent=Msa1030260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
