AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1120560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1120560 MtrunA17_Chr7g0251151 98.821 424 5 0 1 424 1 424 0.0 872
Msa1120560 MtrunA17_Chr1g0209331 70.913 416 117 3 3 415 4 418 0.0 626
Msa1120560 MtrunA17_Chr6g0449141 74.064 374 73 7 55 423 1 355 0.0 561
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1120560 AT5G38200.1 74.408 422 104 3 3 421 11 431 0.0 654
Msa1120560 AT1G66860.1 72.131 427 113 4 2 424 6 430 0.0 639
Msa1120560 AT5G38200.2 77.326 344 74 3 3 343 11 353 0.0 549
Msa1120560 AT5G38200.3 76.218 349 79 3 3 348 11 358 0.0 547
Msa1120560 AT1G15040.1 62.110 417 114 7 1 415 3 377 0.0 521
Msa1120560 AT1G15040.2 68.125 320 84 5 1 318 3 306 5.01e-157 447

Find 115 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTATAATATTTATTTAT+AGG 0.125373 7_3:-70056107 None:intergenic
GTATTATTCCTTTCTTTATT+TGG 0.151809 7_3:+70058672 Msa1120560:three_prime_UTR
ACCTTTGCATCATTGGTTTA+AGG 0.188726 7_3:+70057020 Msa1120560:CDS
GTCATAGTTCCACGTGTTTC+CGG 0.202387 7_3:+70056601 Msa1120560:CDS
AGAAGAGGGTAAGTTTATTA+TGG 0.212954 7_3:+70057188 Msa1120560:CDS
TTAAAATTTGGATAAGGATT+AGG 0.229723 7_3:-70056083 None:intergenic
ACAGATTTGTTCTGAAGTTT+TGG 0.231256 7_3:+70058506 Msa1120560:CDS
GGGATGCCCCTTTGCTTATC+AGG 0.245075 7_3:+70057269 Msa1120560:CDS
TTATTTATAGGATTAAAATT+TGG 0.248090 7_3:-70056095 None:intergenic
TTCTTGAAGCTCGGATTCTT+TGG 0.248892 7_3:-70057952 None:intergenic
TTTGGTAAGAGTGCTCATTT+TGG 0.289772 7_3:+70058690 Msa1120560:three_prime_UTR
AAAATACACCTTTGCATCAT+TGG 0.290589 7_3:+70057013 Msa1120560:CDS
TAAAATTTGGATAAGGATTA+GGG 0.293853 7_3:-70056082 None:intergenic
TTGTGAGCTCACATTAATAT+AGG 0.297385 7_3:-70056033 None:intergenic
TTCTTTGGAAGATGATAAAA+TGG 0.302548 7_3:+70057044 Msa1120560:CDS
TCTTCTGGATTATAAGCATT+AGG 0.305874 7_3:-70057171 None:intergenic
AGATGATAAAATGGACATTA+TGG 0.311048 7_3:+70057053 Msa1120560:CDS
ATAATAAACTTACCCTCTTC+TGG 0.314503 7_3:-70057186 None:intergenic
AAAGCCTCTAAAACTTAATA+AGG 0.318860 7_3:+70057845 Msa1120560:CDS
TCATAGTTCCACGTGTTTCC+GGG 0.320130 7_3:+70056602 Msa1120560:CDS
TTCTGATGAATTTGATTATC+CGG 0.321498 7_3:+70057248 Msa1120560:CDS
GGTACTTTATATCAAGATAT+AGG 0.325689 7_3:+70056892 Msa1120560:CDS
TCATTGGTTTAAGGATTCTT+TGG 0.326878 7_3:+70057029 Msa1120560:CDS
GAAGAGGGTAAGTTTATTAT+GGG 0.330211 7_3:+70057189 Msa1120560:CDS
GTTTCTTTCAAGACAAAGTT+TGG 0.332368 7_3:-70056815 None:intergenic
CTTGTCTTTCTATCACACTA+TGG 0.360794 7_3:+70058482 Msa1120560:CDS
TGAAAGAAACATTCCTTACT+TGG 0.361983 7_3:+70056828 Msa1120560:CDS
CTTCTGGATTATAAGCATTA+GGG 0.362338 7_3:-70057170 None:intergenic
ACATACTATGATTTATGAAA+TGG 0.377593 7_3:-70058770 None:intergenic
TGTGAGCTCACATTAATATA+GGG 0.382175 7_3:-70056032 None:intergenic
CTCCTGATGGTTTGATTGAA+GGG 0.397165 7_3:+70057139 Msa1120560:CDS
ATAGGATTAAAATTTGGATA+AGG 0.401661 7_3:-70056089 None:intergenic
GCTCCTGATGGTTTGATTGA+AGG 0.402159 7_3:+70057138 Msa1120560:CDS
TCTAAAACTTAATAAGGAAA+TGG 0.405237 7_3:+70057851 Msa1120560:CDS
CAAAGCTATCTAACAACATA+TGG 0.407726 7_3:-70056627 None:intergenic
GTACTTTATATCAAGATATA+GGG 0.427133 7_3:+70056893 Msa1120560:CDS
GACCTCTACAATCATGGCCT+TGG 0.440274 7_3:+70057918 Msa1120560:CDS
ATAAGGAAATGGAGAACAAA+AGG 0.459754 7_3:+70057862 Msa1120560:CDS
CTCTGCCCCTTCTTGAAGCT+CGG 0.461502 7_3:-70057961 None:intergenic
GATTTATGAAATGGATAAAG+TGG 0.465962 7_3:-70058761 None:intergenic
TTGAAGCTCGGATTCTTTGG+TGG 0.468863 7_3:-70057949 None:intergenic
AACCCTTCAATCAAACCATC+AGG 0.478520 7_3:-70057141 None:intergenic
CGAATTACCTGATAAGCAAA+GGG 0.482699 7_3:-70057276 None:intergenic
CCTCTACAAATTCCCAAGTA+AGG 0.489708 7_3:-70056841 None:intergenic
CACTCTTACCAAATAAAGAA+AGG 0.511298 7_3:-70058680 None:intergenic
AACGAACTTGTTCTTGCGAA+GGG 0.515604 7_3:-70056302 None:intergenic
GAAAGAAACATTCCTTACTT+GGG 0.524058 7_3:+70056829 Msa1120560:CDS
GGTGCCACAGTTAGAAATGC+AGG 0.528138 7_3:+70058366 Msa1120560:CDS
TCTGATGAATTTGATTATCC+GGG 0.530989 7_3:+70057249 Msa1120560:CDS
ATTAACTATGATGATTATGA+TGG 0.531284 7_3:+70056964 Msa1120560:CDS
CAACGAACTTGTTCTTGCGA+AGG 0.532178 7_3:-70056303 None:intergenic
GGGAAAGAGCTTTCAAACAA+GGG 0.534109 7_3:+70056913 Msa1120560:CDS
ACGAACATTTCTTCATAACC+TGG 0.535426 7_3:+70056193 Msa1120560:five_prime_UTR
TTGTCTTTCTATCACACTAT+GGG 0.536270 7_3:+70058483 Msa1120560:CDS
GCAAAAGACCTCTACAATCA+TGG 0.537541 7_3:+70057912 Msa1120560:CDS
GCTCACATTAATATAGGGAA+TGG 0.537734 7_3:-70056027 None:intergenic
ACAATGGCTTCCGACCTATC+CGG 0.540181 7_3:+70056244 Msa1120560:exon
AAGAATCCGAGCTTCAAGAA+GGG 0.540579 7_3:+70057955 Msa1120560:CDS
CCTTACTTGGGAATTTGTAG+AGG 0.541458 7_3:+70056841 Msa1120560:CDS
TCGAATTACCTGATAAGCAA+AGG 0.541505 7_3:-70057277 None:intergenic
CCATCAGGAGCAAAAGCCAT+TGG 0.542834 7_3:-70057126 None:intergenic
AGGGAAAGAGCTTTCAAACA+AGG 0.547406 7_3:+70056912 Msa1120560:CDS
CTTGATCTTATAGTCGGCTA+TGG 0.548943 7_3:+70056568 Msa1120560:CDS
CATAGAAGAACACCATGGAT+TGG 0.552815 7_3:-70056652 None:intergenic
AAAGAATCCGAGCTTCAAGA+AGG 0.554557 7_3:+70057954 Msa1120560:CDS
GTTAATAGCTATCATCATCA+AGG 0.559848 7_3:+70057075 Msa1120560:CDS
AAAATGGCAAGAAGTGTGAT+GGG 0.561234 7_3:+70058429 Msa1120560:CDS
CTTACTTGGGAATTTGTAGA+GGG 0.563096 7_3:+70056842 Msa1120560:CDS
CACATCATGTCTTTCTCAAG+AGG 0.563983 7_3:+70056714 Msa1120560:CDS
AAAACTGCAGGAATTTGTAA+AGG 0.565853 7_3:+70057782 Msa1120560:intron
TGATAAGCAAAGGGGCATCC+CGG 0.567231 7_3:-70057267 None:intergenic
TCCTTAAACCAATGATGCAA+AGG 0.567486 7_3:-70057021 None:intergenic
AGGGAGAATGCCGGATAGGT+CGG 0.568641 7_3:-70056254 None:intergenic
CATAGCCGACTATAAGATCA+AGG 0.569028 7_3:-70056567 None:intergenic
CAGTTGTTGCTTATCAGAAG+AGG 0.574778 7_3:+70057805 Msa1120560:CDS
GAGAAGACATTGATCCATCA+TGG 0.578667 7_3:+70056680 Msa1120560:CDS
ATTTATGAAATGGATAAAGT+GGG 0.581323 7_3:-70058760 None:intergenic
ATTTGATGTTGAAGAAAACC+AGG 0.582413 7_3:-70056211 None:intergenic
GATAGCTTTGAACCAATCCA+TGG 0.584098 7_3:+70056640 Msa1120560:CDS
CACGAGGGAGAATGCCGGAT+AGG 0.585129 7_3:-70056258 None:intergenic
GAAACACGTGGAACTATGAC+CGG 0.585277 7_3:-70056598 None:intergenic
TAGAACACGAGGGAGAATGC+CGG 0.587130 7_3:-70056263 None:intergenic
TATCACCTTGATCTTATAGT+CGG 0.588888 7_3:+70056562 Msa1120560:CDS
TCAAATTCAATCACGTACAA+TGG 0.592808 7_3:+70056228 Msa1120560:exon
GTGTCTTCCTCGTACCATGA+TGG 0.596983 7_3:-70056694 None:intergenic
CATGGTGTTCTTCTATGTGA+AGG 0.597320 7_3:+70056658 Msa1120560:CDS
CATAGTTCCACGTGTTTCCG+GGG 0.599219 7_3:+70056603 Msa1120560:CDS
AGAGAGACTGAAGCAGAATG+AGG 0.600552 7_3:+70058398 Msa1120560:CDS
AGAATCCGAGCTTCAAGAAG+GGG 0.604138 7_3:+70057956 Msa1120560:CDS
AATGCTTATAATCCAGAAGA+GGG 0.604873 7_3:+70057174 Msa1120560:CDS
TAATGCTTATAATCCAGAAG+AGG 0.605908 7_3:+70057173 Msa1120560:CDS
CTTAGTACAAATACTACACA+TGG 0.608565 7_3:-70058601 None:intergenic
TCAACAAAAGACAAAGAGGT+AGG 0.616792 7_3:-70058578 None:intergenic
ATGGTCAACAAAAGACAAAG+AGG 0.617881 7_3:-70058582 None:intergenic
CTTTGGTGGAACTCATACCA+AGG 0.620553 7_3:-70057935 None:intergenic
CTAGAAACTATTAGAACACG+AGG 0.624352 7_3:-70056274 None:intergenic
TACCAAGGCCATGATTGTAG+AGG 0.624485 7_3:-70057920 None:intergenic
GATGTGCTACACATGGGACA+TGG 0.625120 7_3:+70058627 Msa1120560:three_prime_UTR
TAAGTTTGATGTGCTACACA+TGG 0.627426 7_3:+70058620 Msa1120560:three_prime_UTR
CTTCTAAATGTGGCATGTGG+AGG 0.629521 7_3:+70056871 Msa1120560:CDS
AATGTGAGCTCACAAAACAA+TGG 0.634611 7_3:+70056041 Msa1120560:five_prime_UTR
CAACTTCTAAATGTGGCATG+TGG 0.641956 7_3:+70056868 Msa1120560:CDS
AGAAGGGGCAGAGTTTCTAG+AGG 0.642561 7_3:+70057971 Msa1120560:CDS
ATCTAACAACATATGGACCC+CGG 0.643500 7_3:-70056620 None:intergenic
ATATGGACCCCGGAAACACG+TGG 0.647974 7_3:-70056610 None:intergenic
AGGGTCACAACTTCTAAATG+TGG 0.648276 7_3:+70056861 Msa1120560:CDS
AAGTTTGATGTGCTACACAT+GGG 0.661570 7_3:+70058621 Msa1120560:three_prime_UTR
CATTGATCCATCATGGTACG+AGG 0.661592 7_3:+70056687 Msa1120560:CDS
TCTTATAGTCGGCTATGGCG+CGG 0.674953 7_3:+70056573 Msa1120560:CDS
TGATCCTGCATTTCTAACTG+TGG 0.685111 7_3:-70058370 None:intergenic
TTATGATGGTCATAGACATG+AGG 0.696322 7_3:+70056978 Msa1120560:CDS
GAATTACCTGATAAGCAAAG+GGG 0.697423 7_3:-70057275 None:intergenic
AGGAATAATACAAAAGTACG+AGG 0.724267 7_3:-70058660 None:intergenic
CTTCACATAGAAGAACACCA+TGG 0.730931 7_3:-70056657 None:intergenic
TAGAAACTATTAGAACACGA+GGG 0.757631 7_3:-70056273 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATAGGATTAAAATT+TGG - chr7_3:70056098-70056117 None:intergenic 10.0%
!! TCTCTATAATATTTATTTAT+AGG - chr7_3:70056110-70056129 None:intergenic 10.0%
!!! ATTACATGATTATTGTTTTT+AGG + chr7_3:70056535-70056554 Msa1120560:intron 15.0%
!!! ATAGTACTATTTTCATTTAT+TGG + chr7_3:70057618-70057637 Msa1120560:intron 15.0%
!! AAATCATATATAATTGATGT+AGG - chr7_3:70058252-70058271 None:intergenic 15.0%
!! ACATAAATATATCAATACAT+GGG - chr7_3:70058283-70058302 None:intergenic 15.0%
!! TAAAATTTGGATAAGGATTA+GGG - chr7_3:70056085-70056104 None:intergenic 20.0%
!! TTAAAATTTGGATAAGGATT+AGG - chr7_3:70056086-70056105 None:intergenic 20.0%
!! ATAGGATTAAAATTTGGATA+AGG - chr7_3:70056092-70056111 None:intergenic 20.0%
!! ATCATTCAATATGAATTCTA+AGG + chr7_3:70056377-70056396 Msa1120560:intron 20.0%
!! GTACTTTATATCAAGATATA+GGG + chr7_3:70056893-70056912 Msa1120560:CDS 20.0%
!! ATTAACTATGATGATTATGA+TGG + chr7_3:70056964-70056983 Msa1120560:CDS 20.0%
!!! TTTTGCAAATTTTCATGATT+TGG - chr7_3:70057471-70057490 None:intergenic 20.0%
!!! ATGTTTTGATCTTATTTTCT+TGG + chr7_3:70057513-70057532 Msa1120560:intron 20.0%
!! ATAGTGAAAAAAATCAATTG+AGG - chr7_3:70057600-70057619 None:intergenic 20.0%
!!! ATTTCCTTATTAAGTTTTAG+AGG - chr7_3:70057852-70057871 None:intergenic 20.0%
!!! TCTAAAACTTAATAAGGAAA+TGG + chr7_3:70057851-70057870 Msa1120560:CDS 20.0%
!!! AGGAATATGATAGTTTTTTT+TGG + chr7_3:70058146-70058165 Msa1120560:intron 20.0%
!!! TTAGAGTTATAATGCAATTT+TGG + chr7_3:70058195-70058214 Msa1120560:intron 20.0%
!! CACATAAATATATCAATACA+TGG - chr7_3:70058284-70058303 None:intergenic 20.0%
!! GTATTATTCCTTTCTTTATT+TGG + chr7_3:70058672-70058691 Msa1120560:three_prime_UTR 20.0%
!!! ACACTTTTGTATTTTTTTTG+AGG + chr7_3:70058715-70058734 Msa1120560:intron 20.0%
!!! CACTTTTGTATTTTTTTTGA+GGG + chr7_3:70058716-70058735 Msa1120560:intron 20.0%
!!! ACTTTTGTATTTTTTTTGAG+GGG + chr7_3:70058717-70058736 Msa1120560:intron 20.0%
!! ATTTATGAAATGGATAAAGT+GGG - chr7_3:70058763-70058782 None:intergenic 20.0%
!! ACATACTATGATTTATGAAA+TGG - chr7_3:70058773-70058792 None:intergenic 20.0%
! ATTCATCACATAGAAACAAT+AGG - chr7_3:70056430-70056449 None:intergenic 25.0%
! ACAAGATCGATAAAAAAAAG+AGG - chr7_3:70056507-70056526 None:intergenic 25.0%
! GGTACTTTATATCAAGATAT+AGG + chr7_3:70056892-70056911 Msa1120560:CDS 25.0%
!! TTCTTTGGAAGATGATAAAA+TGG + chr7_3:70057044-70057063 Msa1120560:CDS 25.0%
! AGATGATAAAATGGACATTA+TGG + chr7_3:70057053-70057072 Msa1120560:CDS 25.0%
! TTCTGATGAATTTGATTATC+CGG + chr7_3:70057248-70057267 Msa1120560:CDS 25.0%
!! CTAAATTGATAGTTTATTCC+CGG - chr7_3:70057305-70057324 None:intergenic 25.0%
! CTAGTCCAATAATAATGTAT+TGG - chr7_3:70057732-70057751 None:intergenic 25.0%
!!! AAAGCCTCTAAAACTTAATA+AGG + chr7_3:70057845-70057864 Msa1120560:CDS 25.0%
! TTCATGATGTGTTACATTAT+AGG + chr7_3:70058126-70058145 Msa1120560:intron 25.0%
! ATTGATGTAGGTACTAAAAT+TGG - chr7_3:70058240-70058259 None:intergenic 25.0%
! AGAAAAAAGGTTAAAGCAAA+TGG + chr7_3:70058344-70058363 Msa1120560:CDS 25.0%
! GAAAAAAGGTTAAAGCAAAT+GGG + chr7_3:70058345-70058364 Msa1120560:CDS 25.0%
! GATTTATGAAATGGATAAAG+TGG - chr7_3:70058764-70058783 None:intergenic 25.0%
TGTGAGCTCACATTAATATA+GGG - chr7_3:70056035-70056054 None:intergenic 30.0%
TTGTGAGCTCACATTAATAT+AGG - chr7_3:70056036-70056055 None:intergenic 30.0%
ATGTTCGTGTGATAAAAATG+TGG - chr7_3:70056181-70056200 None:intergenic 30.0%
ATTTGATGTTGAAGAAAACC+AGG - chr7_3:70056214-70056233 None:intergenic 30.0%
TCAAATTCAATCACGTACAA+TGG + chr7_3:70056228-70056247 Msa1120560:exon 30.0%
TAGAAACTATTAGAACACGA+GGG - chr7_3:70056276-70056295 None:intergenic 30.0%
!!! AACAAGTTCGTTGATTTTGT+TGG + chr7_3:70056313-70056332 Msa1120560:CDS 30.0%
TCTTCATCTACTTGATTATG+TGG + chr7_3:70056449-70056468 Msa1120560:intron 30.0%
TATCACCTTGATCTTATAGT+CGG + chr7_3:70056562-70056581 Msa1120560:CDS 30.0%
CAAAGCTATCTAACAACATA+TGG - chr7_3:70056630-70056649 None:intergenic 30.0%
GTTTCTTTCAAGACAAAGTT+TGG - chr7_3:70056818-70056837 None:intergenic 30.0%
TGAAAGAAACATTCCTTACT+TGG + chr7_3:70056828-70056847 Msa1120560:CDS 30.0%
GAAAGAAACATTCCTTACTT+GGG + chr7_3:70056829-70056848 Msa1120560:CDS 30.0%
AAAATACACCTTTGCATCAT+TGG + chr7_3:70057013-70057032 Msa1120560:CDS 30.0%
!! TCATTGGTTTAAGGATTCTT+TGG + chr7_3:70057029-70057048 Msa1120560:CDS 30.0%
GTTAATAGCTATCATCATCA+AGG + chr7_3:70057075-70057094 Msa1120560:CDS 30.0%
CTTCTGGATTATAAGCATTA+GGG - chr7_3:70057173-70057192 None:intergenic 30.0%
TCTTCTGGATTATAAGCATT+AGG - chr7_3:70057174-70057193 None:intergenic 30.0%
TAATGCTTATAATCCAGAAG+AGG + chr7_3:70057173-70057192 Msa1120560:CDS 30.0%
AATGCTTATAATCCAGAAGA+GGG + chr7_3:70057174-70057193 Msa1120560:CDS 30.0%
ATAATAAACTTACCCTCTTC+TGG - chr7_3:70057189-70057208 None:intergenic 30.0%
AGAAGAGGGTAAGTTTATTA+TGG + chr7_3:70057188-70057207 Msa1120560:CDS 30.0%
GAAGAGGGTAAGTTTATTAT+GGG + chr7_3:70057189-70057208 Msa1120560:CDS 30.0%
TCTGATGAATTTGATTATCC+GGG + chr7_3:70057249-70057268 Msa1120560:CDS 30.0%
ATTTATTGGAGAGACAATGT+AGG + chr7_3:70057632-70057651 Msa1120560:intron 30.0%
TGACGCCAATACATTATTAT+TGG + chr7_3:70057724-70057743 Msa1120560:intron 30.0%
CAAAATTCATGAAAAACTGC+AGG + chr7_3:70057770-70057789 Msa1120560:intron 30.0%
AAAACTGCAGGAATTTGTAA+AGG + chr7_3:70057782-70057801 Msa1120560:intron 30.0%
ATAAGGAAATGGAGAACAAA+AGG + chr7_3:70057862-70057881 Msa1120560:CDS 30.0%
!! TTAAGTACTGACATAGACAT+CGG - chr7_3:70058101-70058120 None:intergenic 30.0%
!!! TTTTGGCTTAATTACACGTT+TGG + chr7_3:70058163-70058182 Msa1120560:intron 30.0%
CATTATAACTCTAACTACTG+AGG - chr7_3:70058189-70058208 None:intergenic 30.0%
ATGTAGGTACTAAAATTGGT+CGG - chr7_3:70058236-70058255 None:intergenic 30.0%
GAATGAGGAAAGAGAAAAAA+TGG + chr7_3:70058413-70058432 Msa1120560:CDS 30.0%
TTGTCTTTCTATCACACTAT+GGG + chr7_3:70058483-70058502 Msa1120560:CDS 30.0%
!!! ACAGATTTGTTCTGAAGTTT+TGG + chr7_3:70058506-70058525 Msa1120560:CDS 30.0%
CTTAGTACAAATACTACACA+TGG - chr7_3:70058604-70058623 None:intergenic 30.0%
! AGGAATAATACAAAAGTACG+AGG - chr7_3:70058663-70058682 None:intergenic 30.0%
CACTCTTACCAAATAAAGAA+AGG - chr7_3:70058683-70058702 None:intergenic 30.0%
GCTCACATTAATATAGGGAA+TGG - chr7_3:70056030-70056049 None:intergenic 35.0%
AATGTGAGCTCACAAAACAA+TGG + chr7_3:70056041-70056060 Msa1120560:five_prime_UTR 35.0%
ACGAACATTTCTTCATAACC+TGG + chr7_3:70056193-70056212 Msa1120560:five_prime_UTR 35.0%
CTAGAAACTATTAGAACACG+AGG - chr7_3:70056277-70056296 None:intergenic 35.0%
CTTACTTGGGAATTTGTAGA+GGG + chr7_3:70056842-70056861 Msa1120560:CDS 35.0%
TTATGATGGTCATAGACATG+AGG + chr7_3:70056978-70056997 Msa1120560:CDS 35.0%
!! ACCTTTGCATCATTGGTTTA+AGG + chr7_3:70057020-70057039 Msa1120560:CDS 35.0%
TCCTTAAACCAATGATGCAA+AGG - chr7_3:70057024-70057043 None:intergenic 35.0%
GAATTACCTGATAAGCAAAG+GGG - chr7_3:70057278-70057297 None:intergenic 35.0%
CGAATTACCTGATAAGCAAA+GGG - chr7_3:70057279-70057298 None:intergenic 35.0%
TCGAATTACCTGATAAGCAA+AGG - chr7_3:70057280-70057299 None:intergenic 35.0%
CTTATCAGGTAATTCGAAAC+CGG + chr7_3:70057283-70057302 Msa1120560:intron 35.0%
TTATCAGGTAATTCGAAACC+GGG + chr7_3:70057284-70057303 Msa1120560:intron 35.0%
TCGTTTCTTTATAGTCCTAC+TGG + chr7_3:70057411-70057430 Msa1120560:intron 35.0%
TGGAACCATAGTCAAAGAAA+CGG + chr7_3:70057431-70057450 Msa1120560:intron 35.0%
! AAAAATGGCAAGAAGTGTGA+TGG + chr7_3:70058428-70058447 Msa1120560:CDS 35.0%
! AAAATGGCAAGAAGTGTGAT+GGG + chr7_3:70058429-70058448 Msa1120560:CDS 35.0%
! TGTGATGGGAAAAATGTCAA+TGG + chr7_3:70058443-70058462 Msa1120560:CDS 35.0%
CTTGTCTTTCTATCACACTA+TGG + chr7_3:70058482-70058501 Msa1120560:CDS 35.0%
TCAACAAAAGACAAAGAGGT+AGG - chr7_3:70058581-70058600 None:intergenic 35.0%
ATGGTCAACAAAAGACAAAG+AGG - chr7_3:70058585-70058604 None:intergenic 35.0%
TAAGTTTGATGTGCTACACA+TGG + chr7_3:70058620-70058639 Msa1120560:three_prime_UTR 35.0%
AAGTTTGATGTGCTACACAT+GGG + chr7_3:70058621-70058640 Msa1120560:three_prime_UTR 35.0%
!!! TTTGGTAAGAGTGCTCATTT+TGG + chr7_3:70058690-70058709 Msa1120560:three_prime_UTR 35.0%
! AACGAACTTGTTCTTGCGAA+GGG - chr7_3:70056305-70056324 None:intergenic 40.0%
CATAGCCGACTATAAGATCA+AGG - chr7_3:70056570-70056589 None:intergenic 40.0%
CTTGATCTTATAGTCGGCTA+TGG + chr7_3:70056568-70056587 Msa1120560:CDS 40.0%
ATCTAACAACATATGGACCC+CGG - chr7_3:70056623-70056642 None:intergenic 40.0%
!! GATAGCTTTGAACCAATCCA+TGG + chr7_3:70056640-70056659 Msa1120560:CDS 40.0%
CATAGAAGAACACCATGGAT+TGG - chr7_3:70056655-70056674 None:intergenic 40.0%
CTTCACATAGAAGAACACCA+TGG - chr7_3:70056660-70056679 None:intergenic 40.0%
CATGGTGTTCTTCTATGTGA+AGG + chr7_3:70056658-70056677 Msa1120560:CDS 40.0%
GAGAAGACATTGATCCATCA+TGG + chr7_3:70056680-70056699 Msa1120560:CDS 40.0%
CACATCATGTCTTTCTCAAG+AGG + chr7_3:70056714-70056733 Msa1120560:CDS 40.0%
CCTCTACAAATTCCCAAGTA+AGG - chr7_3:70056844-70056863 None:intergenic 40.0%
CCTTACTTGGGAATTTGTAG+AGG + chr7_3:70056841-70056860 Msa1120560:CDS 40.0%
AGGGTCACAACTTCTAAATG+TGG + chr7_3:70056861-70056880 Msa1120560:CDS 40.0%
CAACTTCTAAATGTGGCATG+TGG + chr7_3:70056868-70056887 Msa1120560:CDS 40.0%
AGGGAAAGAGCTTTCAAACA+AGG + chr7_3:70056912-70056931 Msa1120560:CDS 40.0%
GGGAAAGAGCTTTCAAACAA+GGG + chr7_3:70056913-70056932 Msa1120560:CDS 40.0%
!! TGCACAACGTTTTGTTCCAA+TGG + chr7_3:70057110-70057129 Msa1120560:CDS 40.0%
CTCCTGATGGTTTGATTGAA+GGG + chr7_3:70057139-70057158 Msa1120560:CDS 40.0%
AACCCTTCAATCAAACCATC+AGG - chr7_3:70057144-70057163 None:intergenic 40.0%
! ATCAGCTTTTCTCATACGCT+CGG - chr7_3:70057229-70057248 None:intergenic 40.0%
TCTTTGACTATGGTTCCAGT+AGG - chr7_3:70057429-70057448 None:intergenic 40.0%
GGAACCATAGTCAAAGAAAC+GGG + chr7_3:70057432-70057451 Msa1120560:intron 40.0%
GAGAGACAATGTAGGAGAAA+TGG + chr7_3:70057640-70057659 Msa1120560:intron 40.0%
! CAGTTGTTGCTTATCAGAAG+AGG + chr7_3:70057805-70057824 Msa1120560:CDS 40.0%
!! TTTTAGAGGCTTTTGCACAG+AGG - chr7_3:70057838-70057857 None:intergenic 40.0%
GCAAAAGACCTCTACAATCA+TGG + chr7_3:70057912-70057931 Msa1120560:CDS 40.0%
TTCTTGAAGCTCGGATTCTT+TGG - chr7_3:70057955-70057974 None:intergenic 40.0%
AAAGAATCCGAGCTTCAAGA+AGG + chr7_3:70057954-70057973 Msa1120560:CDS 40.0%
AAGAATCCGAGCTTCAAGAA+GGG + chr7_3:70057955-70057974 Msa1120560:CDS 40.0%
ATTGGTCGGAGAAAACTAGA+GGG - chr7_3:70058222-70058241 None:intergenic 40.0%
AATTGGTCGGAGAAAACTAG+AGG - chr7_3:70058223-70058242 None:intergenic 40.0%
! TTTTTCTTGCTGCACACTCA+AGG - chr7_3:70058331-70058350 None:intergenic 40.0%
TGAGTGTGCAGCAAGAAAAA+AGG + chr7_3:70058331-70058350 Msa1120560:CDS 40.0%
TGATCCTGCATTTCTAACTG+TGG - chr7_3:70058373-70058392 None:intergenic 40.0%
! CAACGAACTTGTTCTTGCGA+AGG - chr7_3:70056306-70056325 None:intergenic 45.0%
GAAACACGTGGAACTATGAC+CGG - chr7_3:70056601-70056620 None:intergenic 45.0%
GTCATAGTTCCACGTGTTTC+CGG + chr7_3:70056601-70056620 Msa1120560:CDS 45.0%
TCATAGTTCCACGTGTTTCC+GGG + chr7_3:70056602-70056621 Msa1120560:CDS 45.0%
CATTGATCCATCATGGTACG+AGG + chr7_3:70056687-70056706 Msa1120560:CDS 45.0%
CTTCTAAATGTGGCATGTGG+AGG + chr7_3:70056871-70056890 Msa1120560:CDS 45.0%
GCTCCTGATGGTTTGATTGA+AGG + chr7_3:70057138-70057157 Msa1120560:CDS 45.0%
! TCAGCTTTTCTCATACGCTC+GGG - chr7_3:70057228-70057247 None:intergenic 45.0%
CAAGCCCGTTTCTTTGACTA+TGG - chr7_3:70057439-70057458 None:intergenic 45.0%
! GGTAGAGTACTAGAGTCTTC+TGG + chr7_3:70057534-70057553 Msa1120560:intron 45.0%
TACCAAGGCCATGATTGTAG+AGG - chr7_3:70057923-70057942 None:intergenic 45.0%
CTTTGGTGGAACTCATACCA+AGG - chr7_3:70057938-70057957 None:intergenic 45.0%
TTGAAGCTCGGATTCTTTGG+TGG - chr7_3:70057952-70057971 None:intergenic 45.0%
AGAATCCGAGCTTCAAGAAG+GGG + chr7_3:70057956-70057975 Msa1120560:CDS 45.0%
GACACTGACATTGATGCGTT+CGG - chr7_3:70058079-70058098 None:intergenic 45.0%
AGAGAGACTGAAGCAGAATG+AGG + chr7_3:70058398-70058417 Msa1120560:CDS 45.0%
ACAATGGCTTCCGACCTATC+CGG + chr7_3:70056244-70056263 Msa1120560:exon 50.0%
TAGAACACGAGGGAGAATGC+CGG - chr7_3:70056266-70056285 None:intergenic 50.0%
TCTTATAGTCGGCTATGGCG+CGG + chr7_3:70056573-70056592 Msa1120560:CDS 50.0%
CATAGTTCCACGTGTTTCCG+GGG + chr7_3:70056603-70056622 Msa1120560:CDS 50.0%
GTGTCTTCCTCGTACCATGA+TGG - chr7_3:70056697-70056716 None:intergenic 50.0%
CCATCAGGAGCAAAAGCCAT+TGG - chr7_3:70057129-70057148 None:intergenic 50.0%
! CCAATGGCTTTTGCTCCTGA+TGG + chr7_3:70057126-70057145 Msa1120560:CDS 50.0%
!! TGATAAGCAAAGGGGCATCC+CGG - chr7_3:70057270-70057289 None:intergenic 50.0%
GACCTCTACAATCATGGCCT+TGG + chr7_3:70057918-70057937 Msa1120560:CDS 50.0%
! AGAAGGGGCAGAGTTTCTAG+AGG + chr7_3:70057971-70057990 Msa1120560:CDS 50.0%
! GGTGCCACAGTTAGAAATGC+AGG + chr7_3:70058366-70058385 Msa1120560:CDS 50.0%
GATGTGCTACACATGGGACA+TGG + chr7_3:70058627-70058646 Msa1120560:three_prime_UTR 50.0%
AGGGAGAATGCCGGATAGGT+CGG - chr7_3:70056257-70056276 None:intergenic 55.0%
ATATGGACCCCGGAAACACG+TGG - chr7_3:70056613-70056632 None:intergenic 55.0%
GGGATGCCCCTTTGCTTATC+AGG + chr7_3:70057269-70057288 Msa1120560:CDS 55.0%
CTCTGCCCCTTCTTGAAGCT+CGG - chr7_3:70057964-70057983 None:intergenic 55.0%
CACGAGGGAGAATGCCGGAT+AGG - chr7_3:70056261-70056280 None:intergenic 60.0%
AGTCGGCTATGGCGCGGTAC+CGG + chr7_3:70056579-70056598 Msa1120560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 70055998 70058812 70055998 ID=Msa1120560;Name=Msa1120560
chr7_3 mRNA 70055998 70058812 70055998 ID=Msa1120560-mRNA-1;Parent=Msa1120560;Name=Msa1120560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=249|1|1|1|0.75|0.6|5|222|424
chr7_3 exon 70055998 70056334 70055998 ID=Msa1120560-mRNA-1:exon:17794;Parent=Msa1120560-mRNA-1
chr7_3 exon 70056557 70057290 70056557 ID=Msa1120560-mRNA-1:exon:17795;Parent=Msa1120560-mRNA-1
chr7_3 exon 70057792 70057992 70057792 ID=Msa1120560-mRNA-1:exon:17796;Parent=Msa1120560-mRNA-1
chr7_3 exon 70058318 70058731 70058318 ID=Msa1120560-mRNA-1:exon:17797;Parent=Msa1120560-mRNA-1
chr7_3 exon 70058753 70058812 70058753 ID=Msa1120560-mRNA-1:exon:17798;Parent=Msa1120560-mRNA-1
chr7_3 five_prime_UTR 70055998 70056246 70055998 ID=Msa1120560-mRNA-1:five_prime_utr;Parent=Msa1120560-mRNA-1
chr7_3 CDS 70056247 70056334 70056247 ID=Msa1120560-mRNA-1:cds;Parent=Msa1120560-mRNA-1
chr7_3 CDS 70056557 70057290 70056557 ID=Msa1120560-mRNA-1:cds;Parent=Msa1120560-mRNA-1
chr7_3 CDS 70057792 70057992 70057792 ID=Msa1120560-mRNA-1:cds;Parent=Msa1120560-mRNA-1
chr7_3 CDS 70058318 70058569 70058318 ID=Msa1120560-mRNA-1:cds;Parent=Msa1120560-mRNA-1
chr7_3 three_prime_UTR 70058570 70058731 70058570 ID=Msa1120560-mRNA-1:three_prime_utr;Parent=Msa1120560-mRNA-1
chr7_3 three_prime_UTR 70058753 70058812 70058753 ID=Msa1120560-mRNA-1:three_prime_utr;Parent=Msa1120560-mRNA-1
Gene Sequence

>Msa1120560

ATGGCTTCCGACCTATCCGGCATTCTCCCTCGTGTTCTAATAGTTTCTAGACGAACCCTTCGCAAGAACAAGTTCGTTGATTTTGTTGGTGAATATCACCTTGATCTTATAGTCGGCTATGGCGCGGTACCGGTCATAGTTCCACGTGTTTCCGGGGTCCATATGTTGTTAGATAGCTTTGAACCAATCCATGGTGTTCTTCTATGTGAAGGAGAAGACATTGATCCATCATGGTACGAGGAAGACACATCATGTCTTTCTCAAGAGGAATTAGAAGAAATAAGAAGACTTCATGTGAGTGACACATCAATCGACAAAGAAAAAGATTCAATTGAATTAGCACTAGCCAAACTTTGTCTTGAAAGAAACATTCCTTACTTGGGAATTTGTAGAGGGTCACAACTTCTAAATGTGGCATGTGGAGGTACTTTATATCAAGATATAGGGAAAGAGCTTTCAAACAAGGGTTTAGAAGAGAGTGAAATTGTGATGCATATTAACTATGATGATTATGATGGTCATAGACATGAGGTAAAAGTTGTTGAAAATACACCTTTGCATCATTGGTTTAAGGATTCTTTGGAAGATGATAAAATGGACATTATGGTTAATAGCTATCATCATCAAGGTGTTAAGAGACTTGCACAACGTTTTGTTCCAATGGCTTTTGCTCCTGATGGTTTGATTGAAGGGTTTTATGACCCTAATGCTTATAATCCAGAAGAGGGTAAGTTTATTATGGGATTGCAGTTTCATCCCGAGCGTATGAGAAAAGCTGATTCTGATGAATTTGATTATCCGGGATGCCCCTTTGCTTATCAGGAATTTGTAAAGGCAGTTGTTGCTTATCAGAAGAGGCTGAATACCTCTGTGCAAAAGCCTCTAAAACTTAATAAGGAAATGGAGAACAAAAGGAAAAGTATAGTGCGTAGTTTCTCACTTGCAAAAGACCTCTACAATCATGGCCTTGGTATGAGTTCCACCAAAGAATCCGAGCTTCAAGAAGGGGCAGAGTTTCTAGAGTCAAACACAGCCTTGAGTGTGCAGCAAGAAAAAAGGTTAAAGCAAATGGGTGCCACAGTTAGAAATGCAGGATCATACATAGAGAGACTGAAGCAGAATGAGGAAAGAGAAAAAATGGCAAGAAGTGTGATGGGAAAAATGTCAATGGAACAATTATCAGAACTCTTGTCTTTCTATCACACTATGGGACAGATTTGTTCTGAAGTTTTGGAGAAAAAGATACATGACATTGTCAATGACGTTAGTTTATGA

Protein sequence

>Msa1120560

MASDLSGILPRVLIVSRRTLRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSWYEEDTSCLSQEELEEIRRLHVSDTSIDKEKDSIELALAKLCLERNIPYLGICRGSQLLNVACGGTLYQDIGKELSNKGLEESEIVMHINYDDYDGHRHEVKVVENTPLHHWFKDSLEDDKMDIMVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPNAYNPEEGKFIMGLQFHPERMRKADSDEFDYPGCPFAYQEFVKAVVAYQKRLNTSVQKPLKLNKEMENKRKSIVRSFSLAKDLYNHGLGMSSTKESELQEGAEFLESNTALSVQQEKRLKQMGATVRNAGSYIERLKQNEEREKMARSVMGKMSMEQLSELLSFYHTMGQICSEVLEKKIHDIVNDVSL*