Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157130 | XP_039683923.1 | 98.585 | 424 | 6 | 0 | 1 | 424 | 1 | 424 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157130 | sp|Q8H0Z4|GT121_ARATH | 61.631 | 417 | 116 | 7 | 1 | 415 | 3 | 377 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157130 | G7KV66 | 98.585 | 424 | 6 | 0 | 1 | 424 | 1 | 424 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1157130 | 0.800530 | 1.380276e-48 | -8.615850e-47 |
| Msa0076640 | Msa1157130 | 0.861293 | 1.136001e-63 | -8.615850e-47 |
| Msa0092220 | Msa1157130 | 0.802895 | 4.515513e-49 | -8.615850e-47 |
| Msa0612580 | Msa1157130 | 0.826017 | 3.416811e-54 | -8.615850e-47 |
| Msa0612590 | Msa1157130 | 0.846107 | 2.673656e-59 | -8.615850e-47 |
| Msa0614290 | Msa1157130 | 0.834138 | 3.565059e-56 | -8.615850e-47 |
| Msa0638820 | Msa1157130 | 0.810001 | 1.431677e-50 | -8.615850e-47 |
| Msa0695630 | Msa1157130 | 0.820386 | 7.051080e-53 | -8.615850e-47 |
| Msa0695650 | Msa1157130 | 0.813706 | 2.235215e-51 | -8.615850e-47 |
| Msa0697510 | Msa1157130 | 0.816219 | 6.190972e-52 | -8.615850e-47 |
| Msa0697520 | Msa1157130 | 0.817982 | 2.485578e-52 | -8.615850e-47 |
| Msa0145430 | Msa1157130 | 0.828368 | 9.347773e-55 | -8.615850e-47 |
| Msa0224210 | Msa1157130 | 0.851590 | 8.037022e-61 | -8.615850e-47 |
| Msa0233920 | Msa1157130 | 0.806540 | 7.828055e-50 | -8.615850e-47 |
| Msa0390790 | Msa1157130 | 0.849788 | 2.582893e-60 | -8.615850e-47 |
| Msa1030260 | Msa1157130 | 0.914920 | 1.087518e-84 | -8.615850e-47 |
| Msa1069270 | Msa1157130 | 0.832300 | 1.022660e-55 | -8.615850e-47 |
| Msa1087890 | Msa1157130 | 0.802549 | 5.321586e-49 | -8.615850e-47 |
| Msa0340370 | Msa1157130 | 0.801488 | 8.792892e-49 | -8.615850e-47 |
| Msa1120560 | Msa1157130 | 0.919182 | 6.192981e-87 | -8.615850e-47 |
| Msa1157130 | Msa1344930 | 0.815522 | 8.856222e-52 | -8.615850e-47 |
| Msa1157130 | Msa1345390 | 0.801117 | 1.047416e-48 | -8.615850e-47 |
| Msa0560280 | Msa1157130 | 0.825233 | 5.242161e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157130 | MtrunA17_Chr7g0251151 | 98.585 | 424 | 6 | 0 | 1 | 424 | 1 | 424 | 0.0 | 868 |
| Msa1157130 | MtrunA17_Chr1g0209331 | 69.952 | 416 | 121 | 3 | 3 | 415 | 4 | 418 | 0.0 | 617 |
| Msa1157130 | MtrunA17_Chr6g0449141 | 74.332 | 374 | 72 | 7 | 55 | 423 | 1 | 355 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157130 | AT5G38200.1 | 75.118 | 422 | 101 | 3 | 3 | 421 | 11 | 431 | 0.0 | 656 |
| Msa1157130 | AT1G66860.1 | 72.300 | 426 | 114 | 3 | 2 | 424 | 6 | 430 | 0.0 | 642 |
| Msa1157130 | AT5G38200.2 | 78.198 | 344 | 71 | 3 | 3 | 343 | 11 | 353 | 0.0 | 551 |
| Msa1157130 | AT5G38200.3 | 75.630 | 357 | 83 | 3 | 3 | 356 | 11 | 366 | 0.0 | 550 |
| Msa1157130 | AT1G15040.1 | 61.631 | 417 | 116 | 7 | 1 | 415 | 3 | 377 | 0.0 | 518 |
| Msa1157130 | AT1G15040.2 | 67.500 | 320 | 86 | 5 | 1 | 318 | 3 | 306 | 1.42e-155 | 443 |
Find 115 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTATTCCTTTCTTTATT+TGG | 0.151809 | 7_4:-45923347 | Msa1157130:three_prime_UTR |
| ATCTTCTCTATAATATTTAT+AGG | 0.187698 | 7_4:+45925908 | None:intergenic |
| ACCTTTGCATCATTGGTTTA+AGG | 0.188726 | 7_4:-45925002 | Msa1157130:CDS |
| AGAGGGGAAAATGGATATTT+TGG | 0.200161 | 7_4:-45924969 | Msa1157130:CDS |
| GTCATAGTTCCACGTGTTTC+CGG | 0.202387 | 7_4:-45925421 | Msa1157130:CDS |
| AGAAGAGGGTAAGTTTATTA+TGG | 0.212954 | 7_4:-45924834 | Msa1157130:CDS |
| TTAAAATTTGGATAAGGATT+AGG | 0.229723 | 7_4:+45925932 | None:intergenic |
| ACAGATTTGTTCTGAAGTTT+TGG | 0.231256 | 7_4:-45923513 | Msa1157130:CDS |
| TTCTTGAAGTTCAGATTCTT+TGG | 0.232601 | 7_4:+45924071 | None:intergenic |
| GGGATGCCCCTTTGCTTATC+AGG | 0.245075 | 7_4:-45924753 | Msa1157130:intron |
| ATATTTATAGGATTAAAATT+TGG | 0.258197 | 7_4:+45925920 | None:intergenic |
| TTCTTTGGAAGAGGGGAAAA+TGG | 0.263628 | 7_4:-45924978 | Msa1157130:CDS |
| TTTGGTAAGAGTGCTCATTT+TGG | 0.289772 | 7_4:-45923329 | Msa1157130:three_prime_UTR |
| AAAATACACCTTTGCATCAT+TGG | 0.290589 | 7_4:-45925009 | Msa1157130:CDS |
| TAAAATTTGGATAAGGATTA+GGG | 0.293853 | 7_4:+45925933 | None:intergenic |
| TTGTGAGCTCACATTAATAT+AGG | 0.297385 | 7_4:+45925982 | None:intergenic |
| ATAATAAACTTACCCTCTTC+TGG | 0.314503 | 7_4:+45924836 | None:intergenic |
| AAAGCCTCTAAAACTTAATA+AGG | 0.318860 | 7_4:-45924178 | Msa1157130:CDS |
| GTTTCTTTCAAGACAAAGTT+TGG | 0.319557 | 7_4:+45925207 | None:intergenic |
| TCATAGTTCCACGTGTTTCC+GGG | 0.320130 | 7_4:-45925420 | Msa1157130:CDS |
| TTCTGATGAATTTGATTATC+CGG | 0.321498 | 7_4:-45924774 | Msa1157130:CDS |
| TCATTGGTTTAAGGATTCTT+TGG | 0.326878 | 7_4:-45924993 | Msa1157130:CDS |
| GAAGAGGGTAAGTTTATTAT+GGG | 0.330211 | 7_4:-45924833 | Msa1157130:CDS |
| CTTGTCTTTCTATCACACTA+TGG | 0.360794 | 7_4:-45923537 | Msa1157130:CDS |
| TGAAAGAAACATTCCTTACT+TGG | 0.361983 | 7_4:-45925194 | Msa1157130:CDS |
| ACATACTATGATTTATGAAA+TGG | 0.377593 | 7_4:+45923249 | None:intergenic |
| TGTGAGCTCACATTAATATA+GGG | 0.382175 | 7_4:+45925983 | None:intergenic |
| TCTTCTGGATTATAAGCATC+AGG | 0.386183 | 7_4:+45924851 | None:intergenic |
| CTCCTGATGGTTTGATTGAA+GGG | 0.397165 | 7_4:-45924883 | Msa1157130:CDS |
| ATAGGATTAAAATTTGGATA+AGG | 0.401661 | 7_4:+45925926 | None:intergenic |
| GCTCCTGATGGTTTGATTGA+AGG | 0.402159 | 7_4:-45924884 | Msa1157130:CDS |
| TCTAAAACTTAATAAGGAAA+TGG | 0.405237 | 7_4:-45924172 | Msa1157130:CDS |
| GACCTCTACAATCATGGCCT+TGG | 0.440274 | 7_4:-45924105 | Msa1157130:CDS |
| ACGAACATTTCTTAATAACT+TGG | 0.440634 | 7_4:-45925826 | Msa1157130:five_prime_UTR |
| TTGAAGTTCAGATTCTTTGG+TGG | 0.459311 | 7_4:+45924074 | None:intergenic |
| GATTTATGAAATGGATAAAG+TGG | 0.465962 | 7_4:+45923258 | None:intergenic |
| AACCCTTCAATCAAACCATC+AGG | 0.478520 | 7_4:+45924881 | None:intergenic |
| GTTAATAGTTATCATCATCA+AGG | 0.482477 | 7_4:-45924947 | Msa1157130:CDS |
| CGAATTACCTGATAAGCAAA+GGG | 0.482699 | 7_4:+45924746 | None:intergenic |
| CCTCTACAAATTCCCAAGTA+AGG | 0.489708 | 7_4:+45925181 | None:intergenic |
| GTTTAAGGATTCTTTGGAAG+AGG | 0.491298 | 7_4:-45924987 | Msa1157130:CDS |
| TTTAAGGATTCTTTGGAAGA+GGG | 0.492185 | 7_4:-45924986 | Msa1157130:CDS |
| ATAAGGAAATGGAAAACAAA+AGG | 0.493176 | 7_4:-45924161 | Msa1157130:CDS |
| CACTCTTACCAAATAAAGAA+AGG | 0.511298 | 7_4:+45923339 | None:intergenic |
| CATAGAAGCACACCATGGAT+TGG | 0.515588 | 7_4:+45925370 | None:intergenic |
| AACGAACTTGTTCTTGCGAA+GGG | 0.515604 | 7_4:+45925717 | None:intergenic |
| GAAAGAAACATTCCTTACTT+GGG | 0.524058 | 7_4:-45925193 | Msa1157130:CDS |
| AAAGAATCTGAACTTCAAGA+AGG | 0.524252 | 7_4:-45924069 | Msa1157130:CDS |
| GGTGCCACAGTTAGAAATGC+AGG | 0.528138 | 7_4:-45923653 | Msa1157130:CDS |
| TCTGATGAATTTGATTATCC+GGG | 0.530989 | 7_4:-45924773 | Msa1157130:CDS |
| TTAAGGATTCTTTGGAAGAG+GGG | 0.531169 | 7_4:-45924985 | Msa1157130:CDS |
| ATTAACTATGATGATTATGA+TGG | 0.531284 | 7_4:-45925058 | Msa1157130:CDS |
| CAACGAACTTGTTCTTGCGA+AGG | 0.532178 | 7_4:+45925716 | None:intergenic |
| ATGTTCGTGTATTAAAATTG+TGG | 0.532867 | 7_4:+45925841 | None:intergenic |
| AAGAATCTGAACTTCAAGAA+GGG | 0.532959 | 7_4:-45924068 | Msa1157130:CDS |
| TTGTCTTTCTATCACACTAT+GGG | 0.536270 | 7_4:-45923536 | Msa1157130:CDS |
| GCAAAAGACCTCTACAATCA+TGG | 0.537541 | 7_4:-45924111 | Msa1157130:CDS |
| GCTCACATTAATATAGGGAA+TGG | 0.537734 | 7_4:+45925988 | None:intergenic |
| ACAATGGCTTCCGACCTATC+CGG | 0.540181 | 7_4:-45925775 | Msa1157130:CDS |
| CCTTACTTGGGAATTTGTAG+AGG | 0.541458 | 7_4:-45925181 | Msa1157130:CDS |
| TCGAATTACCTGATAAGCAA+AGG | 0.541505 | 7_4:+45924745 | None:intergenic |
| CCATCAGGAGCAAAAGCCAT+TGG | 0.542834 | 7_4:+45924896 | None:intergenic |
| CTTGATCTTATAGTCGGCTA+TGG | 0.548943 | 7_4:-45925454 | Msa1157130:CDS |
| AGGAAAAGAGCTTTCAAACA+AGG | 0.550293 | 7_4:-45925110 | Msa1157130:CDS |
| AAAATGGCAAGAAGTGTGAT+GGG | 0.561234 | 7_4:-45923590 | Msa1157130:CDS |
| CTTACTTGGGAATTTGTAGA+GGG | 0.563096 | 7_4:-45925180 | Msa1157130:CDS |
| CACATCATGTCTTTCTCAAG+AGG | 0.563983 | 7_4:-45925308 | Msa1157130:CDS |
| AAAACTGCAGGAATTTGTAA+AGG | 0.565853 | 7_4:-45924241 | Msa1157130:intron |
| TGATAAGCAAAGGGGCATCC+CGG | 0.567231 | 7_4:+45924755 | None:intergenic |
| TCCTTAAACCAATGATGCAA+AGG | 0.567486 | 7_4:+45925001 | None:intergenic |
| AGGGAGAATGCCGGATAGGT+CGG | 0.568641 | 7_4:+45925765 | None:intergenic |
| CATAGCCGACTATAAGATCA+AGG | 0.569028 | 7_4:+45925455 | None:intergenic |
| CAGTTGTTGCTTATCAGAAG+AGG | 0.574778 | 7_4:-45924218 | Msa1157130:CDS |
| GAGAAGACATTGATCCATCA+TGG | 0.578667 | 7_4:-45925342 | Msa1157130:CDS |
| ATTTATGAAATGGATAAAGT+GGG | 0.581323 | 7_4:+45923259 | None:intergenic |
| GGTACTTTATATCAAGACAT+AGG | 0.581651 | 7_4:-45925130 | Msa1157130:CDS |
| GATAGCTTTGAACCAATCCA+TGG | 0.584098 | 7_4:-45925382 | Msa1157130:CDS |
| CACGAGGGAGAATGCCGGAT+AGG | 0.585129 | 7_4:+45925761 | None:intergenic |
| GAAACACGTGGAACTATGAC+CGG | 0.585277 | 7_4:+45925424 | None:intergenic |
| TAGAACACGAGGGAGAATGC+CGG | 0.587130 | 7_4:+45925756 | None:intergenic |
| TATCACCTTGATCTTATAGT+CGG | 0.588888 | 7_4:-45925460 | Msa1157130:CDS |
| CAAAGCTATCTAACAACATG+TGG | 0.591695 | 7_4:+45925395 | None:intergenic |
| TCAAATTCAATCACGTACAA+TGG | 0.592808 | 7_4:-45925791 | Msa1157130:exon |
| GTGTCTTCTTCGTACCATGA+TGG | 0.595392 | 7_4:+45925328 | None:intergenic |
| TGATGCTTATAATCCAGAAG+AGG | 0.598955 | 7_4:-45924849 | Msa1157130:CDS |
| CATAGTTCCACGTGTTTCCG+GGG | 0.599219 | 7_4:-45925419 | Msa1157130:CDS |
| AGAGAGACTGAAGCAGAATG+AGG | 0.600552 | 7_4:-45923621 | Msa1157130:CDS |
| GGAAAAGAGCTTTCAAACAA+GGG | 0.608474 | 7_4:-45925109 | Msa1157130:CDS |
| CTTAGTACAAATACTACACA+TGG | 0.608565 | 7_4:+45923418 | None:intergenic |
| GATGCTTATAATCCAGAAGA+GGG | 0.613931 | 7_4:-45924848 | Msa1157130:CDS |
| ATCTAACAACATGTGGACCC+CGG | 0.615605 | 7_4:+45925402 | None:intergenic |
| TCAACAAAAGACAAAGAGGT+AGG | 0.616792 | 7_4:+45923441 | None:intergenic |
| ATGGTCAACAAAAGACAAAG+AGG | 0.617881 | 7_4:+45923437 | None:intergenic |
| AGAATCTGAACTTCAAGAAG+GGG | 0.620915 | 7_4:-45924067 | Msa1157130:CDS |
| CTAGAAACTATTAGAACACG+AGG | 0.624352 | 7_4:+45925745 | None:intergenic |
| GATGTGCTACACATGGGACA+TGG | 0.625120 | 7_4:-45923392 | Msa1157130:three_prime_UTR |
| TAAGTTTGATGTGCTACACA+TGG | 0.627426 | 7_4:-45923399 | Msa1157130:three_prime_UTR |
| CTTTGGTGGAGTTCATACCA+AGG | 0.629408 | 7_4:+45924088 | None:intergenic |
| CTTCTAAATGTGGCATGTGG+AGG | 0.629521 | 7_4:-45925151 | Msa1157130:CDS |
| ATGTGGACCCCGGAAACACG+TGG | 0.632453 | 7_4:+45925412 | None:intergenic |
| AATGTGAGCTCACAAAACAA+TGG | 0.634611 | 7_4:-45925974 | Msa1157130:five_prime_UTR |
| CAACTTCTAAATGTGGCATG+TGG | 0.641956 | 7_4:-45925154 | Msa1157130:CDS |
| AGAAGGGGCAGAGTTTCTAG+AGG | 0.642561 | 7_4:-45924052 | Msa1157130:intron |
| CTTCTGGATTATAAGCATCA+GGG | 0.643591 | 7_4:+45924852 | None:intergenic |
| TACCAAGGCCATGATTGTAG+AGG | 0.646791 | 7_4:+45924103 | None:intergenic |
| AGGGTCACAACTTCTAAATG+TGG | 0.648276 | 7_4:-45925161 | Msa1157130:CDS |
| AAGTTTGATGTGCTACACAT+GGG | 0.661570 | 7_4:-45923398 | Msa1157130:three_prime_UTR |
| TCTTATAGTCGGCTATGGCG+CGG | 0.674953 | 7_4:-45925449 | Msa1157130:CDS |
| CATGGTGTGCTTCTATGTGA+AGG | 0.682068 | 7_4:-45925364 | Msa1157130:CDS |
| TGATCCTGCATTTCTAACTG+TGG | 0.685111 | 7_4:+45923649 | None:intergenic |
| TTATGATGGTCATAGACATG+AGG | 0.696322 | 7_4:-45925044 | Msa1157130:CDS |
| GAATTACCTGATAAGCAAAG+GGG | 0.697423 | 7_4:+45924747 | None:intergenic |
| CTTCACATAGAAGCACACCA+TGG | 0.698034 | 7_4:+45925365 | None:intergenic |
| AGGAATAATACAAAAGTACG+AGG | 0.724267 | 7_4:+45923359 | None:intergenic |
| TAGAAACTATTAGAACACGA+GGG | 0.757631 | 7_4:+45925746 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATAGGATTAAAATT+TGG | + | chr7_4:45923329-45923348 | None:intergenic | 10.0% |
| !! | TTTATGTGAAATATAATATA+TGG | + | chr7_4:45925484-45925503 | None:intergenic | 10.0% |
| !!! | ATAAATTTTCAATACATTAA+AGG | + | chr7_4:45925508-45925527 | None:intergenic | 10.0% |
| !! | ATCTTCTCTATAATATTTAT+AGG | + | chr7_4:45923341-45923360 | None:intergenic | 15.0% |
| !!! | ATTACATGATTATTGTTTTT+AGG | - | chr7_4:45923759-45923778 | Msa1157130:intron | 15.0% |
| !!! | ATAGTACTATTTTCATTTAT+TGG | - | chr7_4:45924842-45924861 | Msa1157130:CDS | 15.0% |
| !!! | TTTATGTTATTTTTTTTCGT+AGG | - | chr7_4:45925244-45925263 | Msa1157130:CDS | 15.0% |
| !! | TAAAATTTGGATAAGGATTA+GGG | + | chr7_4:45923316-45923335 | None:intergenic | 20.0% |
| !! | TTAAAATTTGGATAAGGATT+AGG | + | chr7_4:45923317-45923336 | None:intergenic | 20.0% |
| !! | ATAGGATTAAAATTTGGATA+AGG | + | chr7_4:45923323-45923342 | None:intergenic | 20.0% |
| !! | ATCATTCAATATGAATTCTA+AGG | - | chr7_4:45923604-45923623 | Msa1157130:CDS | 20.0% |
| !! | ATTAACTATGATGATTATGA+TGG | - | chr7_4:45924188-45924207 | Msa1157130:CDS | 20.0% |
| !!! | TTTTGCAAATTTTCATGATT+TGG | + | chr7_4:45924695-45924714 | None:intergenic | 20.0% |
| !!! | ATGTTTTGATCTTATTTTCT+TGG | - | chr7_4:45924737-45924756 | Msa1157130:intron | 20.0% |
| !! | ATAGTGAAAAAAATCAATTG+AGG | + | chr7_4:45924824-45924843 | None:intergenic | 20.0% |
| !! | ACTAGTCAATAATAATGTAT+TGG | + | chr7_4:45924956-45924975 | None:intergenic | 20.0% |
| !!! | ATTTCCTTATTAAGTTTTAG+AGG | + | chr7_4:45925075-45925094 | None:intergenic | 20.0% |
| !!! | TCTAAAACTTAATAAGGAAA+TGG | - | chr7_4:45925074-45925093 | Msa1157130:CDS | 20.0% |
| !!! | TTTTGACTTAATTACACTTT+TGG | - | chr7_4:45925396-45925415 | Msa1157130:CDS | 20.0% |
| !!! | AATATATGGAGGTATAAAAT+CGG | + | chr7_4:45925470-45925489 | None:intergenic | 20.0% |
| !! | ATGTGAAATATAATATATGG+AGG | + | chr7_4:45925481-45925500 | None:intergenic | 20.0% |
| !! | GTATTATTCCTTTCTTTATT+TGG | - | chr7_4:45925899-45925918 | Msa1157130:five_prime_UTR | 20.0% |
| !!! | ACACTTTTGTATTTTTTTTG+AGG | - | chr7_4:45925942-45925961 | Msa1157130:five_prime_UTR | 20.0% |
| !!! | CACTTTTGTATTTTTTTTGA+GGG | - | chr7_4:45925943-45925962 | Msa1157130:five_prime_UTR | 20.0% |
| !!! | ACTTTTGTATTTTTTTTGAG+GGG | - | chr7_4:45925944-45925963 | Msa1157130:five_prime_UTR | 20.0% |
| !! | ATTTATGAAATGGATAAAGT+GGG | + | chr7_4:45925990-45926009 | None:intergenic | 20.0% |
| !! | ACATACTATGATTTATGAAA+TGG | + | chr7_4:45926000-45926019 | None:intergenic | 20.0% |
| ! | ATGTTCGTGTATTAAAATTG+TGG | + | chr7_4:45923408-45923427 | None:intergenic | 25.0% |
| ! | ACGAACATTTCTTAATAACT+TGG | - | chr7_4:45923420-45923439 | Msa1157130:three_prime_UTR | 25.0% |
| ! | ATTCATCTCATAGAAACAAT+AGG | + | chr7_4:45923657-45923676 | None:intergenic | 25.0% |
| ! | TCTTCATCTATTTGATTATG+TGG | - | chr7_4:45923676-45923695 | Msa1157130:CDS | 25.0% |
| ! | TAACAAGATCGATAAAAAAG+AGG | + | chr7_4:45923733-45923752 | None:intergenic | 25.0% |
| ! | GTTAATAGTTATCATCATCA+AGG | - | chr7_4:45924299-45924318 | Msa1157130:intron | 25.0% |
| ! | TTCTGATGAATTTGATTATC+CGG | - | chr7_4:45924472-45924491 | Msa1157130:intron | 25.0% |
| !! | CTAAATTGATAGTTTATTCC+CGG | + | chr7_4:45924529-45924548 | None:intergenic | 25.0% |
| !!! | AAAGCCTCTAAAACTTAATA+AGG | - | chr7_4:45925068-45925087 | Msa1157130:CDS | 25.0% |
| ! | ATAAGGAAATGGAAAACAAA+AGG | - | chr7_4:45925085-45925104 | Msa1157130:CDS | 25.0% |
| ! | AGAAAAAAGGTTAAAGCAAA+TGG | - | chr7_4:45925571-45925590 | Msa1157130:intron | 25.0% |
| ! | GAAAAAAGGTTAAAGCAAAT+GGG | - | chr7_4:45925572-45925591 | Msa1157130:intron | 25.0% |
| ! | GATTTATGAAATGGATAAAG+TGG | + | chr7_4:45925991-45926010 | None:intergenic | 25.0% |
| TGTGAGCTCACATTAATATA+GGG | + | chr7_4:45923266-45923285 | None:intergenic | 30.0% | |
| TTGTGAGCTCACATTAATAT+AGG | + | chr7_4:45923267-45923286 | None:intergenic | 30.0% | |
| TCAAATTCAATCACGTACAA+TGG | - | chr7_4:45923455-45923474 | Msa1157130:exon | 30.0% | |
| TAGAAACTATTAGAACACGA+GGG | + | chr7_4:45923503-45923522 | None:intergenic | 30.0% | |
| !!! | AACAAGTTCGTTGATTTTGT+TGG | - | chr7_4:45923540-45923559 | Msa1157130:CDS | 30.0% |
| TATCACCTTGATCTTATAGT+CGG | - | chr7_4:45923786-45923805 | Msa1157130:intron | 30.0% | |
| GTTTCTTTCAAGACAAAGTT+TGG | + | chr7_4:45924042-45924061 | None:intergenic | 30.0% | |
| TGAAAGAAACATTCCTTACT+TGG | - | chr7_4:45924052-45924071 | Msa1157130:intron | 30.0% | |
| GAAAGAAACATTCCTTACTT+GGG | - | chr7_4:45924053-45924072 | Msa1157130:CDS | 30.0% | |
| GGTACTTTATATCAAGACAT+AGG | - | chr7_4:45924116-45924135 | Msa1157130:CDS | 30.0% | |
| AAAATACACCTTTGCATCAT+TGG | - | chr7_4:45924237-45924256 | Msa1157130:intron | 30.0% | |
| !! | TCATTGGTTTAAGGATTCTT+TGG | - | chr7_4:45924253-45924272 | Msa1157130:intron | 30.0% |
| ! | TTTAAGGATTCTTTGGAAGA+GGG | - | chr7_4:45924260-45924279 | Msa1157130:intron | 30.0% |
| ATAATAAACTTACCCTCTTC+TGG | + | chr7_4:45924413-45924432 | None:intergenic | 30.0% | |
| AGAAGAGGGTAAGTTTATTA+TGG | - | chr7_4:45924412-45924431 | Msa1157130:intron | 30.0% | |
| GAAGAGGGTAAGTTTATTAT+GGG | - | chr7_4:45924413-45924432 | Msa1157130:intron | 30.0% | |
| TCTGATGAATTTGATTATCC+GGG | - | chr7_4:45924473-45924492 | Msa1157130:intron | 30.0% | |
| ATTTATTGGAGAGACAATGT+AGG | - | chr7_4:45924856-45924875 | Msa1157130:CDS | 30.0% | |
| CAAAATTCATGAAAAACTGC+AGG | - | chr7_4:45924993-45925012 | Msa1157130:CDS | 30.0% | |
| AAAACTGCAGGAATTTGTAA+AGG | - | chr7_4:45925005-45925024 | Msa1157130:CDS | 30.0% | |
| TTCTTGAAGTTCAGATTCTT+TGG | + | chr7_4:45925178-45925197 | None:intergenic | 30.0% | |
| AAAGAATCTGAACTTCAAGA+AGG | - | chr7_4:45925177-45925196 | Msa1157130:CDS | 30.0% | |
| AAGAATCTGAACTTCAAGAA+GGG | - | chr7_4:45925178-45925197 | Msa1157130:CDS | 30.0% | |
| !!! | GTTATTTTTTTTCGTAGGAC+AGG | - | chr7_4:45925249-45925268 | Msa1157130:CDS | 30.0% |
| ATACTAGACACACATTCTAT+CGG | + | chr7_4:45925280-45925299 | None:intergenic | 30.0% | |
| ACAAATGACAATGACACATT+CGG | + | chr7_4:45925303-45925322 | None:intergenic | 30.0% | |
| GAATGAGGAAAGAGAAAAAA+TGG | - | chr7_4:45925640-45925659 | Msa1157130:intron | 30.0% | |
| TTGTCTTTCTATCACACTAT+GGG | - | chr7_4:45925710-45925729 | Msa1157130:CDS | 30.0% | |
| !!! | ACAGATTTGTTCTGAAGTTT+TGG | - | chr7_4:45925733-45925752 | Msa1157130:CDS | 30.0% |
| CTTAGTACAAATACTACACA+TGG | + | chr7_4:45925831-45925850 | None:intergenic | 30.0% | |
| ! | AGGAATAATACAAAAGTACG+AGG | + | chr7_4:45925890-45925909 | None:intergenic | 30.0% |
| CACTCTTACCAAATAAAGAA+AGG | + | chr7_4:45925910-45925929 | None:intergenic | 30.0% | |
| GCTCACATTAATATAGGGAA+TGG | + | chr7_4:45923261-45923280 | None:intergenic | 35.0% | |
| AATGTGAGCTCACAAAACAA+TGG | - | chr7_4:45923272-45923291 | Msa1157130:intron | 35.0% | |
| CTAGAAACTATTAGAACACG+AGG | + | chr7_4:45923504-45923523 | None:intergenic | 35.0% | |
| CAAAGCTATCTAACAACATG+TGG | + | chr7_4:45923854-45923873 | None:intergenic | 35.0% | |
| CTTACTTGGGAATTTGTAGA+GGG | - | chr7_4:45924066-45924085 | Msa1157130:CDS | 35.0% | |
| AGGAAAAGAGCTTTCAAACA+AGG | - | chr7_4:45924136-45924155 | Msa1157130:CDS | 35.0% | |
| GGAAAAGAGCTTTCAAACAA+GGG | - | chr7_4:45924137-45924156 | Msa1157130:CDS | 35.0% | |
| TTATGATGGTCATAGACATG+AGG | - | chr7_4:45924202-45924221 | Msa1157130:CDS | 35.0% | |
| !! | ACCTTTGCATCATTGGTTTA+AGG | - | chr7_4:45924244-45924263 | Msa1157130:intron | 35.0% |
| TCCTTAAACCAATGATGCAA+AGG | + | chr7_4:45924248-45924267 | None:intergenic | 35.0% | |
| ! | GTTTAAGGATTCTTTGGAAG+AGG | - | chr7_4:45924259-45924278 | Msa1157130:intron | 35.0% |
| ! | TTAAGGATTCTTTGGAAGAG+GGG | - | chr7_4:45924261-45924280 | Msa1157130:intron | 35.0% |
| ! | AGAGGGGAAAATGGATATTT+TGG | - | chr7_4:45924277-45924296 | Msa1157130:intron | 35.0% |
| CTTCTGGATTATAAGCATCA+GGG | + | chr7_4:45924397-45924416 | None:intergenic | 35.0% | |
| TCTTCTGGATTATAAGCATC+AGG | + | chr7_4:45924398-45924417 | None:intergenic | 35.0% | |
| TGATGCTTATAATCCAGAAG+AGG | - | chr7_4:45924397-45924416 | Msa1157130:intron | 35.0% | |
| GATGCTTATAATCCAGAAGA+GGG | - | chr7_4:45924398-45924417 | Msa1157130:intron | 35.0% | |
| GAATTACCTGATAAGCAAAG+GGG | + | chr7_4:45924502-45924521 | None:intergenic | 35.0% | |
| CGAATTACCTGATAAGCAAA+GGG | + | chr7_4:45924503-45924522 | None:intergenic | 35.0% | |
| TCGAATTACCTGATAAGCAA+AGG | + | chr7_4:45924504-45924523 | None:intergenic | 35.0% | |
| CTTATCAGGTAATTCGAAAC+CGG | - | chr7_4:45924507-45924526 | Msa1157130:intron | 35.0% | |
| TTATCAGGTAATTCGAAACC+GGG | - | chr7_4:45924508-45924527 | Msa1157130:intron | 35.0% | |
| TCGTTTCTTTATAGTCCTAC+TGG | - | chr7_4:45924635-45924654 | Msa1157130:intron | 35.0% | |
| TGGAACCATAGTCAAAGAAA+CGG | - | chr7_4:45924655-45924674 | Msa1157130:intron | 35.0% | |
| TTGAAGTTCAGATTCTTTGG+TGG | + | chr7_4:45925175-45925194 | None:intergenic | 35.0% | |
| AGAATCTGAACTTCAAGAAG+GGG | - | chr7_4:45925179-45925198 | Msa1157130:CDS | 35.0% | |
| ATCGGTCGGAAAAATCTAAA+GGG | + | chr7_4:45925452-45925471 | None:intergenic | 35.0% | |
| AATCGGTCGGAAAAATCTAA+AGG | + | chr7_4:45925453-45925472 | None:intergenic | 35.0% | |
| ! | TATGGAGGTATAAAATCGGT+CGG | + | chr7_4:45925466-45925485 | None:intergenic | 35.0% |
| ! | AAAAATGGCAAGAAGTGTGA+TGG | - | chr7_4:45925655-45925674 | Msa1157130:intron | 35.0% |
| ! | AAAATGGCAAGAAGTGTGAT+GGG | - | chr7_4:45925656-45925675 | Msa1157130:intron | 35.0% |
| ! | TGTGATGGGAAAAATGTCAA+TGG | - | chr7_4:45925670-45925689 | Msa1157130:intron | 35.0% |
| CTTGTCTTTCTATCACACTA+TGG | - | chr7_4:45925709-45925728 | Msa1157130:CDS | 35.0% | |
| TCAACAAAAGACAAAGAGGT+AGG | + | chr7_4:45925808-45925827 | None:intergenic | 35.0% | |
| ATGGTCAACAAAAGACAAAG+AGG | + | chr7_4:45925812-45925831 | None:intergenic | 35.0% | |
| TAAGTTTGATGTGCTACACA+TGG | - | chr7_4:45925847-45925866 | Msa1157130:five_prime_UTR | 35.0% | |
| AAGTTTGATGTGCTACACAT+GGG | - | chr7_4:45925848-45925867 | Msa1157130:five_prime_UTR | 35.0% | |
| !!! | TTTGGTAAGAGTGCTCATTT+TGG | - | chr7_4:45925917-45925936 | Msa1157130:five_prime_UTR | 35.0% |
| ! | AACGAACTTGTTCTTGCGAA+GGG | + | chr7_4:45923532-45923551 | None:intergenic | 40.0% |
| CATAGCCGACTATAAGATCA+AGG | + | chr7_4:45923794-45923813 | None:intergenic | 40.0% | |
| CTTGATCTTATAGTCGGCTA+TGG | - | chr7_4:45923792-45923811 | Msa1157130:intron | 40.0% | |
| !! | GATAGCTTTGAACCAATCCA+TGG | - | chr7_4:45923864-45923883 | Msa1157130:intron | 40.0% |
| GAGAAGACATTGATCCATCA+TGG | - | chr7_4:45923904-45923923 | Msa1157130:intron | 40.0% | |
| CACATCATGTCTTTCTCAAG+AGG | - | chr7_4:45923938-45923957 | Msa1157130:intron | 40.0% | |
| CCTCTACAAATTCCCAAGTA+AGG | + | chr7_4:45924068-45924087 | None:intergenic | 40.0% | |
| CCTTACTTGGGAATTTGTAG+AGG | - | chr7_4:45924065-45924084 | Msa1157130:CDS | 40.0% | |
| AGGGTCACAACTTCTAAATG+TGG | - | chr7_4:45924085-45924104 | Msa1157130:CDS | 40.0% | |
| CAACTTCTAAATGTGGCATG+TGG | - | chr7_4:45924092-45924111 | Msa1157130:CDS | 40.0% | |
| ! | TTCTTTGGAAGAGGGGAAAA+TGG | - | chr7_4:45924268-45924287 | Msa1157130:intron | 40.0% |
| !! | TGCACAACGTTTTGTTCCAA+TGG | - | chr7_4:45924334-45924353 | Msa1157130:intron | 40.0% |
| CTCCTGATGGTTTGATTGAA+GGG | - | chr7_4:45924363-45924382 | Msa1157130:intron | 40.0% | |
| AACCCTTCAATCAAACCATC+AGG | + | chr7_4:45924368-45924387 | None:intergenic | 40.0% | |
| ! | ATCAGCTTTTCTCATACGCT+CGG | + | chr7_4:45924453-45924472 | None:intergenic | 40.0% |
| TCTTTGACTATGGTTCCAGT+AGG | + | chr7_4:45924653-45924672 | None:intergenic | 40.0% | |
| GGAACCATAGTCAAAGAAAC+GGG | - | chr7_4:45924656-45924675 | Msa1157130:intron | 40.0% | |
| GAGAGACAATGTAGGAGAAA+TGG | - | chr7_4:45924864-45924883 | Msa1157130:CDS | 40.0% | |
| ! | CAGTTGTTGCTTATCAGAAG+AGG | - | chr7_4:45925028-45925047 | Msa1157130:CDS | 40.0% |
| !! | TTTTAGAGGCTTTTGCACAG+AGG | + | chr7_4:45925061-45925080 | None:intergenic | 40.0% |
| GCAAAAGACCTCTACAATCA+TGG | - | chr7_4:45925135-45925154 | Msa1157130:CDS | 40.0% | |
| ! | CATTGTCATTTGTCAGTGTC+CGG | - | chr7_4:45925310-45925329 | Msa1157130:CDS | 40.0% |
| TCGGTCGGAAAAATCTAAAG+GGG | + | chr7_4:45925451-45925470 | None:intergenic | 40.0% | |
| TGAGTGTGCAGCAAGAAAAA+AGG | - | chr7_4:45925558-45925577 | Msa1157130:intron | 40.0% | |
| TGATCCTGCATTTCTAACTG+TGG | + | chr7_4:45925600-45925619 | None:intergenic | 40.0% | |
| ! | CAACGAACTTGTTCTTGCGA+AGG | + | chr7_4:45923533-45923552 | None:intergenic | 45.0% |
| GAAACACGTGGAACTATGAC+CGG | + | chr7_4:45923825-45923844 | None:intergenic | 45.0% | |
| GTCATAGTTCCACGTGTTTC+CGG | - | chr7_4:45923825-45923844 | Msa1157130:intron | 45.0% | |
| TCATAGTTCCACGTGTTTCC+GGG | - | chr7_4:45923826-45923845 | Msa1157130:intron | 45.0% | |
| ATCTAACAACATGTGGACCC+CGG | + | chr7_4:45923847-45923866 | None:intergenic | 45.0% | |
| ! | CATAGAAGCACACCATGGAT+TGG | + | chr7_4:45923879-45923898 | None:intergenic | 45.0% |
| ! | CTTCACATAGAAGCACACCA+TGG | + | chr7_4:45923884-45923903 | None:intergenic | 45.0% |
| CATGGTGTGCTTCTATGTGA+AGG | - | chr7_4:45923882-45923901 | Msa1157130:intron | 45.0% | |
| GTGTCTTCTTCGTACCATGA+TGG | + | chr7_4:45923921-45923940 | None:intergenic | 45.0% | |
| CTTCTAAATGTGGCATGTGG+AGG | - | chr7_4:45924095-45924114 | Msa1157130:CDS | 45.0% | |
| GCTCCTGATGGTTTGATTGA+AGG | - | chr7_4:45924362-45924381 | Msa1157130:intron | 45.0% | |
| ! | TCAGCTTTTCTCATACGCTC+GGG | + | chr7_4:45924452-45924471 | None:intergenic | 45.0% |
| CAAGCCCGTTTCTTTGACTA+TGG | + | chr7_4:45924663-45924682 | None:intergenic | 45.0% | |
| ! | GGTAGAGTACTAGAGTCTTC+TGG | - | chr7_4:45924758-45924777 | Msa1157130:CDS | 45.0% |
| TACCAAGGCCATGATTGTAG+AGG | + | chr7_4:45925146-45925165 | None:intergenic | 45.0% | |
| CTTTGGTGGAGTTCATACCA+AGG | + | chr7_4:45925161-45925180 | None:intergenic | 45.0% | |
| TGAAGTAGTGACTCAGACAC+CGG | + | chr7_4:45925332-45925351 | None:intergenic | 45.0% | |
| AGAGAGACTGAAGCAGAATG+AGG | - | chr7_4:45925625-45925644 | Msa1157130:intron | 45.0% | |
| ACAATGGCTTCCGACCTATC+CGG | - | chr7_4:45923471-45923490 | Msa1157130:exon | 50.0% | |
| TAGAACACGAGGGAGAATGC+CGG | + | chr7_4:45923493-45923512 | None:intergenic | 50.0% | |
| TCTTATAGTCGGCTATGGCG+CGG | - | chr7_4:45923797-45923816 | Msa1157130:intron | 50.0% | |
| CATAGTTCCACGTGTTTCCG+GGG | - | chr7_4:45923827-45923846 | Msa1157130:intron | 50.0% | |
| CCATCAGGAGCAAAAGCCAT+TGG | + | chr7_4:45924353-45924372 | None:intergenic | 50.0% | |
| ! | CCAATGGCTTTTGCTCCTGA+TGG | - | chr7_4:45924350-45924369 | Msa1157130:intron | 50.0% |
| !! | TGATAAGCAAAGGGGCATCC+CGG | + | chr7_4:45924494-45924513 | None:intergenic | 50.0% |
| GACCTCTACAATCATGGCCT+TGG | - | chr7_4:45925141-45925160 | Msa1157130:CDS | 50.0% | |
| ! | AGAAGGGGCAGAGTTTCTAG+AGG | - | chr7_4:45925194-45925213 | Msa1157130:CDS | 50.0% |
| ! | GGTGCCACAGTTAGAAATGC+AGG | - | chr7_4:45925593-45925612 | Msa1157130:intron | 50.0% |
| GATGTGCTACACATGGGACA+TGG | - | chr7_4:45925854-45925873 | Msa1157130:five_prime_UTR | 50.0% | |
| AGGGAGAATGCCGGATAGGT+CGG | + | chr7_4:45923484-45923503 | None:intergenic | 55.0% | |
| GGGATGCCCCTTTGCTTATC+AGG | - | chr7_4:45924493-45924512 | Msa1157130:intron | 55.0% | |
| CACGAGGGAGAATGCCGGAT+AGG | + | chr7_4:45923488-45923507 | None:intergenic | 60.0% | |
| ATGTGGACCCCGGAAACACG+TGG | + | chr7_4:45923837-45923856 | None:intergenic | 60.0% | |
| AGTCGGCTATGGCGCGGTAC+CGG | - | chr7_4:45923803-45923822 | Msa1157130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 45923229 | 45926039 | 45923229 | ID=Msa1157130;Name=Msa1157130 |
| chr7_4 | mRNA | 45923229 | 45926039 | 45923229 | ID=Msa1157130-mRNA-1;Parent=Msa1157130;Name=Msa1157130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=245|1|1|1|0.75|0.6|5|222|424 |
| chr7_4 | exon | 45923229 | 45923288 | 45923229 | ID=Msa1157130-mRNA-1:exon:11941;Parent=Msa1157130-mRNA-1 |
| chr7_4 | exon | 45923310 | 45923723 | 45923310 | ID=Msa1157130-mRNA-1:exon:11940;Parent=Msa1157130-mRNA-1 |
| chr7_4 | exon | 45924053 | 45924253 | 45924053 | ID=Msa1157130-mRNA-1:exon:11939;Parent=Msa1157130-mRNA-1 |
| chr7_4 | exon | 45924754 | 45925487 | 45924754 | ID=Msa1157130-mRNA-1:exon:11938;Parent=Msa1157130-mRNA-1 |
| chr7_4 | exon | 45925707 | 45926039 | 45925707 | ID=Msa1157130-mRNA-1:exon:11937;Parent=Msa1157130-mRNA-1 |
| chr7_4 | five_prime_UTR | 45925795 | 45926039 | 45925795 | ID=Msa1157130-mRNA-1:five_prime_utr;Parent=Msa1157130-mRNA-1 |
| chr7_4 | CDS | 45925707 | 45925794 | 45925707 | ID=Msa1157130-mRNA-1:cds;Parent=Msa1157130-mRNA-1 |
| chr7_4 | CDS | 45924754 | 45925487 | 45924754 | ID=Msa1157130-mRNA-1:cds;Parent=Msa1157130-mRNA-1 |
| chr7_4 | CDS | 45924053 | 45924253 | 45924053 | ID=Msa1157130-mRNA-1:cds;Parent=Msa1157130-mRNA-1 |
| chr7_4 | CDS | 45923472 | 45923723 | 45923472 | ID=Msa1157130-mRNA-1:cds;Parent=Msa1157130-mRNA-1 |
| chr7_4 | three_prime_UTR | 45923310 | 45923471 | 45923310 | ID=Msa1157130-mRNA-1:three_prime_utr;Parent=Msa1157130-mRNA-1 |
| chr7_4 | three_prime_UTR | 45923229 | 45923288 | 45923229 | ID=Msa1157130-mRNA-1:three_prime_utr;Parent=Msa1157130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
