AlfalfaGEDB | Msa1047320

M. sativa cultivar zhongmu-4 / Msa1047320

KEGG: -
GO: GO:0001101 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047320	XP_013447443.1	97.010	301	9	0	1	301	1	301	0.0	597

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047320	sp\|Q9M886\|LBD41_ARATH	60.351	285	69	4	1	281	1	245	4.02e-112	328

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047320	A0A072TVI9	97.010	301	9	0	1	301	1	301	0.0	597

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TFs/TRs:

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Gene ID	Type	Classification
Msa1047320	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0043840	Msa1047320	0.807744	4.351475e-50	-8.615850e-47
Msa0090500	Msa1047320	0.800717	1.264296e-48	-8.615850e-47
Msa0931370	Msa1047320	0.813409	2.598062e-51	-8.615850e-47
Msa0941520	Msa1047320	0.814902	1.215907e-51	-8.615850e-47
Msa0970100	Msa1047320	0.808960	2.395629e-50	-8.615850e-47
Msa0978530	Msa1047320	0.800925	1.146367e-48	-8.615850e-47
Msa1047320	Msa1061780	0.800783	1.225838e-48	-8.615850e-47
Msa1047320	Msa1134740	0.818644	1.760137e-52	-8.615850e-47
Msa1047320	Msa1134770	0.955623	1.976444e-113	-8.615850e-47
Msa1047320	Msa1342560	0.832419	9.555874e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047320	MtrunA17_Chr7g0215281	97.010	301	9	0	1	301	1	301	0.0	597
Msa1047320	MtrunA17_Chr6g0457431	80.625	160	26	2	1	160	1	155	3.12e-91	268
Msa1047320	MtrunA17_Chr6g0469271	44.395	223	114	4	1	213	1	223	1.32e-57	185
Msa1047320	MtrunA17_Chr4g0053911	50.888	169	67	2	3	159	1	165	1.43e-54	177
Msa1047320	MtrunA17_Chr6g0470651	51.149	174	68	6	1	164	1	167	1.24e-52	172
Msa1047320	MtrunA17_Chr5g0401401	64.545	110	39	0	3	112	1	110	5.13e-52	170
Msa1047320	MtrunA17_Chr6g0470631	50.575	174	69	6	1	164	1	167	1.68e-51	169
Msa1047320	MtrunA17_Chr1g0207471	60.577	104	41	0	3	106	1	104	6.12e-45	151
Msa1047320	MtrunA17_Chr1g0209841	42.029	207	98	5	1	196	1	196	1.04e-44	151

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1047320	AT3G02550.1	60.351	285	69	4	1	281	1	245	4.08e-113	328
Msa1047320	AT1G67100.1	82.270	141	22	2	1	138	1	141	1.42e-82	249
Msa1047320	AT1G68510.1	62.941	170	53	2	1	160	1	170	4.17e-74	227
Msa1047320	AT3G49940.1	70.000	110	33	0	3	112	1	110	4.08e-55	179
Msa1047320	AT5G67420.2	65.455	110	38	0	3	112	1	110	5.67e-54	176
Msa1047320	AT5G67420.1	65.455	110	38	0	3	112	1	110	5.67e-54	176
Msa1047320	AT4G37540.1	66.667	111	37	0	3	113	1	111	3.61e-53	174

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Find 118 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGGAAAGAAAGAA+GGG	0.546091	7_2:+8122499	None:intergenic
AAAATGCGGATGAGTTGTAA+CGG	0.616520	7_2:-8122385	Msa1047320:CDS
AAACCGAACCAAGCCAAACC+CGG	0.593382	7_2:+8121197	None:intergenic
AAACCGACTGAACCGTAAAT+TGG	0.257065	7_2:+8121867	None:intergenic
AAAGAGAGAGAGAAAGCCAA+TGG	0.572825	7_2:+8122548	None:intergenic
AAAGAGTAGTAATGAGAACA+AGG	0.495367	7_2:-8121598	Msa1047320:CDS
AACCCCAACCTGCCTGAATG+TGG	0.546066	7_2:-8122694	Msa1047320:five_prime_UTR
AAGAAAACACTAACAAAATG+AGG	0.561350	7_2:-8120871	None:intergenic
AAGAGTAGTAATGAGAACAA+GGG	0.634462	7_2:-8121597	Msa1047320:CDS
AAGCCAAACCCGGTCTAAGC+CGG	0.498806	7_2:+8121207	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGTAAACAACCAAATTTG+TGG	+	chr7_2:8120886-8120905	None:intergenic	30.0%
GTATTGCATGTTTGGATAAA+CGG	+	chr7_2:8121519-8121538	None:intergenic	30.0%
CGAATAGTGAATCCAATTTA+CGG	-	chr7_2:8121725-8121744	Msa1047320:CDS	30.0%
AAAGAGTAGTAATGAGAACA+AGG	-	chr7_2:8122006-8122025	Msa1047320:intron	30.0%
AAGAGTAGTAATGAGAACAA+GGG	-	chr7_2:8122007-8122026	Msa1047320:intron	30.0%
ACTTTCTCATCTACATAGTT+TGG	+	chr7_2:8122606-8122625	None:intergenic	30.0%
TGTAAGTTGTAACAACTTGA+TGG	+	chr7_2:8122646-8122665	None:intergenic	30.0%
CAAGTTGTTACAACTTACAA+GGG	-	chr7_2:8122647-8122666	Msa1047320:five_prime_UTR	30.0%
GAAGTAAACAACCAAATTTG+TGG	+	chr7_2:8120886-8120905	None:intergenic	30.0%
GTATTGCATGTTTGGATAAA+CGG	+	chr7_2:8121519-8121538	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	8120872	8122754	8120872	ID=Msa1047320;Name=Msa1047320
chr7_2	mRNA	8120872	8122754	8120872	ID=Msa1047320-mRNA-1;Parent=Msa1047320;Name=Msa1047320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=350\|1\|1\|1\|1\|1\|2\|349\|301
chr7_2	exon	8120872	8121936	8120872	ID=Msa1047320-mRNA-1:exon:2128;Parent=Msa1047320-mRNA-1
chr7_2	exon	8122215	8122754	8122215	ID=Msa1047320-mRNA-1:exon:2127;Parent=Msa1047320-mRNA-1
chr7_2	five_prime_UTR	8122405	8122754	8122405	ID=Msa1047320-mRNA-1:five_prime_utr;Parent=Msa1047320-mRNA-1
chr7_2	CDS	8122215	8122404	8122215	ID=Msa1047320-mRNA-1:cds;Parent=Msa1047320-mRNA-1
chr7_2	CDS	8121221	8121936	8121221	ID=Msa1047320-mRNA-1:cds;Parent=Msa1047320-mRNA-1
chr7_2	three_prime_UTR	8120872	8121220	8120872	ID=Msa1047320-mRNA-1:three_prime_utr;Parent=Msa1047320-mRNA-1

Gene Sequence

>Msa1047320

ATGCGGATGAGTTGTAACGGTTGTAGAGTACTAAGAAAAGGTTGCAGTGAAAACTGTAGCATAAGACCTTGTTTACAATGGATCAAAAGCCCTGAATCACAAGCTAATGCCACCGTGTTTCTCGCCAAATTCTACGGTCGTGCTGGTCTCATGAACCTTGTTAACGCCGGTCCCGAACATCTTCGTCCAGCAATTTTTCGTTCGTTGTTGTACGAAGCATGTGGTCGAATAGTGAATCCAATTTACGGTTCAGTCGGTTTATTATGGTCCGGAAGCTGGCAGCTATGTCAAGCCGCGGTGGAAGCCGTTTTAAAAGGCGCGCCGATCACACCAATAACTTCGGAAGCAGCTGCTAACGGGAGGGGCCCACCACTCAAAGCCTATGACATCCGTCATGTGTCGAAGGAGGAAAACTCGGCCGCGTCGACCGAGTTAACTCAACAAAGAGTCAAGACTCGGTCGCGTAAGCGGTCGAGTTTAGCCAAGCCGAAGATACAAGAAGAGGAAAAGAGTAGTAATGAGAACAAGGGATTTGAATCCGGTTCAACTGAACCGATCGGTTCGGTTGAACCGGTTGAAGAGGTGATGAACCGATCAGCGAGTCATGAGTCGTCGATTAGCCACCAGTCTGAGGCGGTTGCGTTGGTGGATGGAGAGAGTAAAGATAGTGAGAGTGAAACTTCGATGATCTTATTTAGAGATGAACCGGAGTTGGACCGGAAAATGAAGCCGGTTGACCGAACCGGTGAGAGTGGAGAGGAAAAGGTTGGTTTGGAGCTGACTCTTGGGCTTGAACCGGTTTCACGTGTTTATCATGTGGTTCCTGTGAAGAAAAGAAGGGTTGTATTGAAGGATTGTGGTGTTGGCTCATGGAATGTGGAGTTGGGGCTTCAATATCCGGCTTAG

Protein sequence

>Msa1047320

MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKEENSAASTELTQQRVKTRSRKRSSLAKPKIQEEEKSSNENKGFESGSTEPIGSVEPVEEVMNRSASHESSISHQSEAVALVDGESKDSESETSMILFRDEPELDRKMKPVDRTGESGEEKVGLELTLGLEPVSRVYHVVPVKKRRVVLKDCGVGSWNVELGLQYPA*