Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941520 | XP_003618732.1 | 93.625 | 251 | 16 | 0 | 1 | 251 | 1 | 251 | 5.06e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941520 | sp|Q9M886|LBD41_ARATH | 52.344 | 256 | 98 | 4 | 1 | 251 | 1 | 237 | 8.23e-83 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941520 | G7KMR0 | 93.625 | 251 | 16 | 0 | 1 | 251 | 1 | 251 | 2.41e-165 | 467 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0941520 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021400 | Msa0941520 | 0.806912 | 6.532436e-50 | -8.615850e-47 |
| Msa0036550 | Msa0941520 | 0.809539 | 1.799652e-50 | -8.615850e-47 |
| Msa0043840 | Msa0941520 | 0.830068 | 3.615969e-55 | -8.615850e-47 |
| Msa0046430 | Msa0941520 | 0.824172 | 9.323264e-54 | -8.615850e-47 |
| Msa0064960 | Msa0941520 | 0.807150 | 5.816688e-50 | -8.615850e-47 |
| Msa0090190 | Msa0941520 | 0.804029 | 2.628225e-49 | -8.615850e-47 |
| Msa0090500 | Msa0941520 | 0.827456 | 1.549322e-54 | -8.615850e-47 |
| Msa0104740 | Msa0941520 | 0.807927 | 3.980070e-50 | -8.615850e-47 |
| Msa0110240 | Msa0941520 | 0.806906 | 6.552197e-50 | -8.615850e-47 |
| Msa0711240 | Msa0941520 | 0.828057 | 1.110522e-54 | -8.615850e-47 |
| Msa0716600 | Msa0941520 | 0.803877 | 2.826482e-49 | -8.615850e-47 |
| Msa0735340 | Msa0941520 | 0.813489 | 2.494931e-51 | -8.615850e-47 |
| Msa0758000 | Msa0941520 | 0.802837 | 4.642374e-49 | -8.615850e-47 |
| Msa0777210 | Msa0941520 | 0.804600 | 1.998332e-49 | -8.615850e-47 |
| Msa0128340 | Msa0941520 | 0.808079 | 3.694416e-50 | -8.615850e-47 |
| Msa0128740 | Msa0941520 | 0.809702 | 1.660476e-50 | -8.615850e-47 |
| Msa0129270 | Msa0941520 | 0.824752 | 6.808532e-54 | -8.615850e-47 |
| Msa0137760 | Msa0941520 | 0.826708 | 2.338804e-54 | -8.615850e-47 |
| Msa0137970 | Msa0941520 | 0.831191 | 1.919983e-55 | -8.615850e-47 |
| Msa0144010 | Msa0941520 | 0.803324 | 3.681448e-49 | -8.615850e-47 |
| Msa0176600 | Msa0941520 | 0.809036 | 2.307211e-50 | -8.615850e-47 |
| Msa0182840 | Msa0941520 | 0.812853 | 3.438916e-51 | -8.615850e-47 |
| Msa0183920 | Msa0941520 | 0.811831 | 5.750281e-51 | -8.615850e-47 |
| Msa0223050 | Msa0941520 | 0.808410 | 3.139690e-50 | -8.615850e-47 |
| Msa0228690 | Msa0941520 | 0.808933 | 2.427489e-50 | -8.615850e-47 |
| Msa0375500 | Msa0941520 | 0.802576 | 5.255462e-49 | -8.615850e-47 |
| Msa0375550 | Msa0941520 | 0.803830 | 2.890498e-49 | -8.615850e-47 |
| Msa0424300 | Msa0941520 | 0.834337 | 3.178232e-56 | -8.615850e-47 |
| Msa0444200 | Msa0941520 | 0.816056 | 6.730286e-52 | -8.615850e-47 |
| Msa0471210 | Msa0941520 | 0.820971 | 5.173661e-53 | -8.615850e-47 |
| Msa0261490 | Msa0941520 | 0.815809 | 7.642372e-52 | -8.615850e-47 |
| Msa0267710 | Msa0941520 | 0.806904 | 6.559426e-50 | -8.615850e-47 |
| Msa0515930 | Msa0941520 | 0.834895 | 2.300984e-56 | -8.615850e-47 |
| Msa0538520 | Msa0941520 | 0.808098 | 3.659974e-50 | -8.615850e-47 |
| Msa0575950 | Msa0941520 | 0.824290 | 8.744372e-54 | -8.615850e-47 |
| Msa0847140 | Msa0941520 | 0.809482 | 1.851021e-50 | -8.615850e-47 |
| Msa0876230 | Msa0941520 | 0.834330 | 3.189472e-56 | -8.615850e-47 |
| Msa0902340 | Msa0941520 | 0.805361 | 1.385148e-49 | -8.615850e-47 |
| Msa0921860 | Msa0941520 | 0.805691 | 1.181084e-49 | -8.615850e-47 |
| Msa0931370 | Msa0941520 | 0.813660 | 2.287766e-51 | -8.615850e-47 |
| Msa0941520 | Msa0970040 | 0.820455 | 6.799185e-53 | -8.615850e-47 |
| Msa0941520 | Msa0970100 | 0.841376 | 4.934798e-58 | -8.615850e-47 |
| Msa0941520 | Msa0978530 | 0.948544 | 7.648519e-107 | -8.615850e-47 |
| Msa0941520 | Msa1036590 | 0.829313 | 5.518986e-55 | -8.615850e-47 |
| Msa0941520 | Msa1046220 | 0.803930 | 2.755361e-49 | -8.615850e-47 |
| Msa0941520 | Msa1047320 | 0.814902 | 1.215907e-51 | -8.615850e-47 |
| Msa0941520 | Msa1076830 | 0.806892 | 6.596371e-50 | -8.615850e-47 |
| Msa0941520 | Msa1076900 | 0.834629 | 2.684273e-56 | -8.615850e-47 |
| Msa0941520 | Msa1085560 | 0.823506 | 1.335600e-53 | -8.615850e-47 |
| Msa0941520 | Msa1130770 | 0.809888 | 1.514698e-50 | -8.615850e-47 |
| Msa0941520 | Msa1134740 | 0.817409 | 3.347479e-52 | -8.615850e-47 |
| Msa0941520 | Msa1134770 | 0.841525 | 4.507873e-58 | -8.615850e-47 |
| Msa0941520 | Msa1150860 | 0.812424 | 4.270494e-51 | -8.615850e-47 |
| Msa0941520 | Msa1214960 | 0.802633 | 5.113627e-49 | -8.615850e-47 |
| Msa0941520 | Msa1253270 | 0.805346 | 1.395267e-49 | -8.615850e-47 |
| Msa0941520 | Msa1335500 | 0.828287 | 9.776288e-55 | -8.615850e-47 |
| Msa0941520 | Msa1356450 | 0.805860 | 1.088546e-49 | -8.615850e-47 |
| Msa0941520 | Msa1373560 | 0.813597 | 2.361276e-51 | -8.615850e-47 |
| Msa0941520 | Msa1376070 | 0.818113 | 2.321383e-52 | -8.615850e-47 |
| Msa0941520 | Msa1377460 | 0.834063 | 3.720998e-56 | -8.615850e-47 |
| Msa0941520 | Msa1379250 | 0.810213 | 1.288916e-50 | -8.615850e-47 |
| Msa0941520 | Msa1395720 | 0.804658 | 1.943767e-49 | -8.615850e-47 |
| Msa0941520 | Msa1402000 | 0.822527 | 2.258790e-53 | -8.615850e-47 |
| Msa0941520 | Msa1409060 | 0.814966 | 1.177109e-51 | -8.615850e-47 |
| Msa0941520 | Msa1434700 | 0.821343 | 4.246712e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941520 | MtrunA17_Chr6g0457431 | 92.547 | 161 | 12 | 0 | 1 | 161 | 1 | 161 | 4.46e-109 | 311 |
| Msa0941520 | MtrunA17_Chr7g0215281 | 60.289 | 277 | 70 | 6 | 1 | 246 | 1 | 268 | 9.46e-102 | 298 |
| Msa0941520 | MtrunA17_Chr6g0469271 | 48.018 | 227 | 94 | 8 | 1 | 208 | 1 | 222 | 1.75e-63 | 198 |
| Msa0941520 | MtrunA17_Chr6g0470651 | 44.934 | 227 | 101 | 8 | 1 | 208 | 1 | 222 | 7.52e-57 | 181 |
| Msa0941520 | MtrunA17_Chr6g0470631 | 44.690 | 226 | 95 | 9 | 1 | 204 | 1 | 218 | 6.89e-55 | 176 |
| Msa0941520 | MtrunA17_Chr4g0053911 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 8.57e-53 | 171 |
| Msa0941520 | MtrunA17_Chr5g0401401 | 51.282 | 156 | 65 | 2 | 3 | 158 | 1 | 145 | 7.04e-51 | 166 |
| Msa0941520 | MtrunA17_Chr1g0209841 | 46.114 | 193 | 79 | 6 | 1 | 182 | 1 | 179 | 1.09e-50 | 165 |
| Msa0941520 | MtrunA17_Chr1g0207471 | 60.952 | 105 | 41 | 0 | 3 | 107 | 1 | 105 | 1.10e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941520 | AT3G02550.1 | 52.344 | 256 | 98 | 4 | 1 | 251 | 1 | 237 | 8.36e-84 | 251 |
| Msa0941520 | AT1G67100.1 | 74.342 | 152 | 32 | 2 | 1 | 150 | 1 | 147 | 1.95e-78 | 236 |
| Msa0941520 | AT1G68510.1 | 49.200 | 250 | 101 | 5 | 1 | 241 | 1 | 233 | 2.13e-71 | 218 |
| Msa0941520 | AT4G37540.1 | 64.865 | 111 | 39 | 0 | 3 | 113 | 1 | 111 | 7.93e-51 | 166 |
| Msa0941520 | AT3G49940.1 | 64.545 | 110 | 39 | 0 | 3 | 112 | 1 | 110 | 8.34e-51 | 166 |
| Msa0941520 | AT5G67420.2 | 61.818 | 110 | 42 | 0 | 3 | 112 | 1 | 110 | 3.46e-50 | 165 |
| Msa0941520 | AT5G67420.1 | 61.818 | 110 | 42 | 0 | 3 | 112 | 1 | 110 | 3.46e-50 | 165 |
Find 81 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGACGATTCATGGCTTT+TGG | 0.201879 | 6_3:-15352446 | None:intergenic |
| AGGATCGTGAACCCTATTTA+TGG | 0.235139 | 6_3:+15352139 | Msa0941520:CDS |
| AGTCCCACGGACCCATAAAT+AGG | 0.249387 | 6_3:-15352151 | None:intergenic |
| TTTGCTTGGCTTCGGCTTCA+TGG | 0.277744 | 6_3:-15352374 | None:intergenic |
| TTTGGACCGGTCCATCTCTT+TGG | 0.293038 | 6_3:-15352428 | None:intergenic |
| CTCATCAACCTCATCAATTC+TGG | 0.302253 | 6_3:+15351254 | Msa0941520:CDS |
| ACTCCGACTCATCATGAAAA+AGG | 0.304175 | 6_3:-15352519 | None:intergenic |
| GTCCATCTCTTTGGCCGAAT+TGG | 0.316087 | 6_3:-15352419 | None:intergenic |
| GCTGGCTCAGCGACGATTCA+TGG | 0.322687 | 6_3:-15352453 | None:intergenic |
| AAAGAAGTTGGGTCTGGTTC+AGG | 0.369264 | 6_3:+15352394 | Msa0941520:CDS |
| CCAACTTCTTTGCTTGGCTT+CGG | 0.382494 | 6_3:-15352382 | None:intergenic |
| TTGTAACATAAGACCATGTT+TGG | 0.384670 | 6_3:+15351160 | Msa0941520:CDS |
| CCAGACCCAACTTCTTTGCT+TGG | 0.386538 | 6_3:-15352388 | None:intergenic |
| TGACACGTGGCGTATGTCAT+AGG | 0.396608 | 6_3:-15352293 | None:intergenic |
| GTTGGCTTGGAGCTGAGGCT+TGG | 0.400046 | 6_3:+15352613 | Msa0941520:CDS |
| CGCTCACACCTTCCTCAGCT+TGG | 0.407332 | 6_3:-15352585 | None:intergenic |
| CCACTTTCACTATCTTTACC+TGG | 0.420513 | 6_3:-15352475 | None:intergenic |
| TTTCACTATCTTTACCTGGC+TGG | 0.430951 | 6_3:-15352471 | None:intergenic |
| GCGTATGTCATAGGCCTTGA+AGG | 0.433445 | 6_3:-15352284 | None:intergenic |
| CGGAGGAGACTAAGCAGGTT+AGG | 0.436816 | 6_3:+15352329 | Msa0941520:CDS |
| GTAGCATTAGCTTGTGATTG+AGG | 0.440070 | 6_3:-15351197 | None:intergenic |
| GGATCGTGAACCCTATTTAT+GGG | 0.455002 | 6_3:+15352140 | Msa0941520:CDS |
| GTCCCACGGACCCATAAATA+GGG | 0.458198 | 6_3:-15352150 | None:intergenic |
| CTGAGGAAGGTGTGAGCGAT+GGG | 0.462871 | 6_3:+15352590 | Msa0941520:CDS |
| TGTGAGCGATGGGGTTGGCT+TGG | 0.465281 | 6_3:+15352600 | Msa0941520:CDS |
| CTTCATGGCTCGTCTGATGC+GGG | 0.465619 | 6_3:-15352359 | None:intergenic |
| CTTACCTTAGCTTGTGACTC+AGG | 0.472502 | 6_3:-15352547 | None:intergenic |
| CATTGCTCTATGAGGCTTGT+GGG | 0.474610 | 6_3:+15352116 | Msa0941520:CDS |
| GTCTGGTTCAGGGTCCAATT+CGG | 0.477350 | 6_3:+15352405 | Msa0941520:CDS |
| CTGAGTCACAAGCTAAGGTA+AGG | 0.488936 | 6_3:+15352548 | Msa0941520:CDS |
| CGGAAGCTGCTGAAAATGAG+AGG | 0.496600 | 6_3:+15352254 | Msa0941520:CDS |
| GTCATAGGCCTTGAAGGGTG+GGG | 0.497567 | 6_3:-15352278 | None:intergenic |
| ATGGGGTTGGCTTGGAGCTG+AGG | 0.499585 | 6_3:+15352608 | Msa0941520:CDS |
| CGAAGCCAAGCAAAGAAGTT+GGG | 0.505704 | 6_3:+15352383 | Msa0941520:CDS |
| TGTCATAGGCCTTGAAGGGT+GGG | 0.515150 | 6_3:-15352279 | None:intergenic |
| GTCCAATTCGGCCAAAGAGA+TGG | 0.515470 | 6_3:+15352417 | Msa0941520:CDS |
| CCGAAGCCAAGCAAAGAAGT+TGG | 0.516761 | 6_3:+15352382 | Msa0941520:CDS |
| GCCGATCACTCCGATAGCTT+CGG | 0.516934 | 6_3:+15352234 | Msa0941520:CDS |
| GAATCGTCGCTGAGCCAGCC+AGG | 0.516935 | 6_3:+15352457 | Msa0941520:CDS |
| GGTTCTGAAAATCTTCGTCC+TGG | 0.520270 | 6_3:+15351275 | Msa0941520:CDS |
| CCAAGCAAAGAAGTTGGGTC+TGG | 0.522693 | 6_3:+15352388 | Msa0941520:CDS |
| AAGAAGTTGGGTCTGGTTCA+GGG | 0.523176 | 6_3:+15352395 | Msa0941520:CDS |
| CCAGGTAAAGATAGTGAAAG+TGG | 0.523543 | 6_3:+15352475 | Msa0941520:CDS |
| CGTGTCAAAAGTTGAGAACT+CGG | 0.526941 | 6_3:+15352309 | Msa0941520:CDS |
| TCAGCAGCTTCCGAAGCTAT+CGG | 0.530626 | 6_3:-15352244 | None:intergenic |
| GCTGAGGAAGGTGTGAGCGA+TGG | 0.538043 | 6_3:+15352589 | Msa0941520:CDS |
| TCATTGCTCTATGAGGCTTG+TGG | 0.539310 | 6_3:+15352115 | Msa0941520:CDS |
| CGTGTCACATGAGGAGTACA+TGG | 0.540596 | 6_3:+15352645 | Msa0941520:CDS |
| GCTTCATGGCTCGTCTGATG+CGG | 0.547697 | 6_3:-15352360 | None:intergenic |
| AAAATGAGAATGAGTTGTAA+TGG | 0.553876 | 6_3:+15351104 | None:intergenic |
| TAAGGTAAGGGGTCGAGCTG+AGG | 0.555280 | 6_3:+15352561 | Msa0941520:CDS |
| CACTTGATCCATTCCAAACA+TGG | 0.555522 | 6_3:-15351173 | None:intergenic |
| TGAACCTGAGTCACAAGCTA+AGG | 0.556029 | 6_3:+15352543 | Msa0941520:CDS |
| GAACCCTATTTATGGGTCCG+TGG | 0.556160 | 6_3:+15352147 | Msa0941520:CDS |
| AAGGTAAGGGGTCGAGCTGA+GGG | 0.557055 | 6_3:+15352562 | Msa0941520:CDS |
| ACATAAGACCATGTTTGGAA+TGG | 0.560066 | 6_3:+15351165 | Msa0941520:CDS |
| GCACCTCTGTCAAGCCGCTG+TGG | 0.565125 | 6_3:+15352192 | Msa0941520:CDS |
| ATTCGGCCAAAGAGATGGAC+CGG | 0.570458 | 6_3:+15352422 | Msa0941520:CDS |
| AACCCTATTTATGGGTCCGT+GGG | 0.573464 | 6_3:+15352148 | Msa0941520:CDS |
| CAGGTAAAGATAGTGAAAGT+GGG | 0.576306 | 6_3:+15352476 | Msa0941520:CDS |
| TGCTCTATGAGGCTTGTGGG+AGG | 0.581729 | 6_3:+15352119 | Msa0941520:CDS |
| TTTCAGAACCAGAATTGATG+AGG | 0.582737 | 6_3:-15351262 | None:intergenic |
| CATGTACTCCTCATGTGACA+CGG | 0.587922 | 6_3:-15352644 | None:intergenic |
| GCTGAGGGCCAAGCTGAGGA+AGG | 0.588802 | 6_3:+15352577 | Msa0941520:CDS |
| TCGAGCTGAGGGCCAAGCTG+AGG | 0.593883 | 6_3:+15352573 | Msa0941520:CDS |
| GAAGGTGTGAGCGATGGGGT+TGG | 0.599166 | 6_3:+15352595 | Msa0941520:CDS |
| TGAGTCACAAGCTAAGGTAA+GGG | 0.602895 | 6_3:+15352549 | Msa0941520:CDS |
| CGTATGTCATAGGCCTTGAA+GGG | 0.610350 | 6_3:-15352283 | None:intergenic |
| GAACTCGGAGGAGACTAAGC+AGG | 0.613697 | 6_3:+15352324 | Msa0941520:CDS |
| AGACTAAGCAGGTTAGGACT+CGG | 0.616984 | 6_3:+15352335 | Msa0941520:CDS |
| CTTCCACAGCGGCTTGACAG+AGG | 0.620565 | 6_3:-15352195 | None:intergenic |
| TAGTGAAAGTGGGGTCTCTG+TGG | 0.628045 | 6_3:+15352486 | Msa0941520:CDS |
| GGAAGCTGCTGAAAATGAGA+GGG | 0.630324 | 6_3:+15352255 | Msa0941520:CDS |
| ATGTACTCCTCATGTGACAC+GGG | 0.633111 | 6_3:-15352643 | None:intergenic |
| GAGTCACAAGCTAAGGTAAG+GGG | 0.633464 | 6_3:+15352550 | Msa0941520:CDS |
| TATCGAACCCGTGTCACATG+AGG | 0.633807 | 6_3:+15352636 | Msa0941520:CDS |
| ACCAGACCATAAAAGTCCCA+CGG | 0.659463 | 6_3:-15352164 | None:intergenic |
| AGGTAAAGATAGTGAAAGTG+GGG | 0.668264 | 6_3:+15352477 | Msa0941520:CDS |
| CTTCAAAACGGCTTCCACAG+CGG | 0.739571 | 6_3:-15352206 | None:intergenic |
| TGAGGAAGGTGTGAGCGATG+GGG | 0.769651 | 6_3:+15352591 | Msa0941520:CDS |
| GTCAAAAGTTGAGAACTCGG+AGG | 0.783017 | 6_3:+15352312 | Msa0941520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAAGAAAATTACA+AGG | - | chr6_3:15351513-15351532 | None:intergenic | 10.0% |
| !!! | TTGTTAATTGTTTTTTATTT+TGG | + | chr6_3:15351664-15351683 | Msa0941520:intron | 10.0% |
| !!! | AAAAAAATCTTAATTTTTCA+TGG | - | chr6_3:15351773-15351792 | None:intergenic | 10.0% |
| !! | AAATTTAAAAGAAAATTACA+AGG | - | chr6_3:15351513-15351532 | None:intergenic | 10.0% |
| !!! | TTGTTAATTGTTTTTTATTT+TGG | + | chr6_3:15351664-15351683 | Msa0941520:intron | 10.0% |
| !!! | AAAAAAATCTTAATTTTTCA+TGG | - | chr6_3:15351773-15351792 | None:intergenic | 10.0% |
| !!! | TAAATCATAGTAATTTTTTC+AGG | - | chr6_3:15351861-15351880 | None:intergenic | 15.0% |
| !! | GAAAAAATTACTATGATTTA+TGG | + | chr6_3:15351861-15351880 | Msa0941520:intron | 15.0% |
| !!! | TAAATCATAGTAATTTTTTC+AGG | - | chr6_3:15351861-15351880 | None:intergenic | 15.0% |
| !! | GAAAAAATTACTATGATTTA+TGG | + | chr6_3:15351861-15351880 | Msa0941520:intron | 15.0% |
| !! | GTACAAAATAAAAATTTACC+AGG | - | chr6_3:15351296-15351315 | None:intergenic | 20.0% |
| !! | ACTATTAAAGCAGAAAATTT+GGG | - | chr6_3:15351577-15351596 | None:intergenic | 20.0% |
| !! | AACTATTAAAGCAGAAAATT+TGG | - | chr6_3:15351578-15351597 | None:intergenic | 20.0% |
| !!! | TGATTTTTATTTGAATCCTT+AGG | + | chr6_3:15351605-15351624 | Msa0941520:intron | 20.0% |
| !!! | TGTTTTTTATTTTGGTACAT+AGG | + | chr6_3:15351672-15351691 | Msa0941520:intron | 20.0% |
| !!! | GAAAATCTTTAGAAGAAATT+TGG | + | chr6_3:15351746-15351765 | Msa0941520:intron | 20.0% |
| !! | ATGGAAAATGAGTATATAAT+TGG | - | chr6_3:15351916-15351935 | None:intergenic | 20.0% |
| !!! | AATTCTTTAGAAATTTGACA+TGG | - | chr6_3:15352015-15352034 | None:intergenic | 20.0% |
| !!! | TGTCAAATTTCTAAAGAATT+TGG | + | chr6_3:15352015-15352034 | Msa0941520:intron | 20.0% |
| !!! | GTCAAATTTCTAAAGAATTT+GGG | + | chr6_3:15352016-15352035 | Msa0941520:intron | 20.0% |
| !!! | TCAAATTTCTAAAGAATTTG+GGG | + | chr6_3:15352017-15352036 | Msa0941520:intron | 20.0% |
| !!! | TTTCATATTGATTGTGATTT+TGG | + | chr6_3:15352065-15352084 | Msa0941520:intron | 20.0% |
| !! | GTACAAAATAAAAATTTACC+AGG | - | chr6_3:15351296-15351315 | None:intergenic | 20.0% |
| !! | ACTATTAAAGCAGAAAATTT+GGG | - | chr6_3:15351577-15351596 | None:intergenic | 20.0% |
| !! | AACTATTAAAGCAGAAAATT+TGG | - | chr6_3:15351578-15351597 | None:intergenic | 20.0% |
| !!! | TGATTTTTATTTGAATCCTT+AGG | + | chr6_3:15351605-15351624 | Msa0941520:intron | 20.0% |
| !!! | TGTTTTTTATTTTGGTACAT+AGG | + | chr6_3:15351672-15351691 | Msa0941520:intron | 20.0% |
| !!! | GAAAATCTTTAGAAGAAATT+TGG | + | chr6_3:15351746-15351765 | Msa0941520:intron | 20.0% |
| !! | ATGGAAAATGAGTATATAAT+TGG | - | chr6_3:15351916-15351935 | None:intergenic | 20.0% |
| !!! | AATTCTTTAGAAATTTGACA+TGG | - | chr6_3:15352015-15352034 | None:intergenic | 20.0% |
| !!! | TGTCAAATTTCTAAAGAATT+TGG | + | chr6_3:15352015-15352034 | Msa0941520:intron | 20.0% |
| !!! | GTCAAATTTCTAAAGAATTT+GGG | + | chr6_3:15352016-15352035 | Msa0941520:intron | 20.0% |
| !!! | TCAAATTTCTAAAGAATTTG+GGG | + | chr6_3:15352017-15352036 | Msa0941520:intron | 20.0% |
| !!! | TTTCATATTGATTGTGATTT+TGG | + | chr6_3:15352065-15352084 | Msa0941520:intron | 20.0% |
| !!! | GTTGTAGAGTTTTAAGAAAA+GGG | + | chr6_3:15351126-15351145 | Msa0941520:CDS | 25.0% |
| !! | GTTTTTCTTGCTAAGTTTTA+TGG | + | chr6_3:15351221-15351240 | Msa0941520:CDS | 25.0% |
| ! | TCAGAATTTCGATAAACAAT+GGG | + | chr6_3:15351428-15351447 | Msa0941520:intron | 25.0% |
| ! | ATTTGATTCTTCTGATAATC+CGG | + | chr6_3:15351802-15351821 | Msa0941520:intron | 25.0% |
| ! | AAAATAACGAGTACAAAACA+TGG | - | chr6_3:15351935-15351954 | None:intergenic | 25.0% |
| ! | AGAAATTTGACATGGAATTA+AGG | - | chr6_3:15352007-15352026 | None:intergenic | 25.0% |
| !!! | GTTGTAGAGTTTTAAGAAAA+GGG | + | chr6_3:15351126-15351145 | Msa0941520:CDS | 25.0% |
| !! | GTTTTTCTTGCTAAGTTTTA+TGG | + | chr6_3:15351221-15351240 | Msa0941520:CDS | 25.0% |
| ! | TCAGAATTTCGATAAACAAT+GGG | + | chr6_3:15351428-15351447 | Msa0941520:intron | 25.0% |
| ! | ATTTGATTCTTCTGATAATC+CGG | + | chr6_3:15351802-15351821 | Msa0941520:intron | 25.0% |
| ! | AAAATAACGAGTACAAAACA+TGG | - | chr6_3:15351935-15351954 | None:intergenic | 25.0% |
| ! | AGAAATTTGACATGGAATTA+AGG | - | chr6_3:15352007-15352026 | None:intergenic | 25.0% |
| !!! | GGTTGTAGAGTTTTAAGAAA+AGG | + | chr6_3:15351125-15351144 | Msa0941520:CDS | 30.0% |
| TTGTAACATAAGACCATGTT+TGG | + | chr6_3:15351160-15351179 | Msa0941520:CDS | 30.0% | |
| TAGGGACACATATCTATAAA+AGG | - | chr6_3:15351331-15351350 | None:intergenic | 30.0% | |
| GTCAGAATTTCGATAAACAA+TGG | + | chr6_3:15351427-15351446 | Msa0941520:intron | 30.0% | |
| GATAAACAATGGGTAATTTG+AGG | + | chr6_3:15351438-15351457 | Msa0941520:intron | 30.0% | |
| !!! | TACAAGGTTTTAGATTTGAG+AGG | - | chr6_3:15351497-15351516 | None:intergenic | 30.0% |
| ! | GGTGTATTTGTTAGTTGTTA+TGG | + | chr6_3:15351693-15351712 | Msa0941520:intron | 30.0% |
| GGATTATCAGAAGAATCAAA+TGG | - | chr6_3:15351803-15351822 | None:intergenic | 30.0% | |
| ! | GAATTAAGGTTTGAAATTGC+TGG | - | chr6_3:15351993-15352012 | None:intergenic | 30.0% |
| !! | AATCCTTTTTCATGATGAGT+CGG | + | chr6_3:15352516-15352535 | Msa0941520:CDS | 30.0% |
| !!! | GGTTGTAGAGTTTTAAGAAA+AGG | + | chr6_3:15351125-15351144 | Msa0941520:CDS | 30.0% |
| TTGTAACATAAGACCATGTT+TGG | + | chr6_3:15351160-15351179 | Msa0941520:CDS | 30.0% | |
| TAGGGACACATATCTATAAA+AGG | - | chr6_3:15351331-15351350 | None:intergenic | 30.0% | |
| GTCAGAATTTCGATAAACAA+TGG | + | chr6_3:15351427-15351446 | Msa0941520:intron | 30.0% | |
| GATAAACAATGGGTAATTTG+AGG | + | chr6_3:15351438-15351457 | Msa0941520:intron | 30.0% | |
| !!! | TACAAGGTTTTAGATTTGAG+AGG | - | chr6_3:15351497-15351516 | None:intergenic | 30.0% |
| ! | GGTGTATTTGTTAGTTGTTA+TGG | + | chr6_3:15351693-15351712 | Msa0941520:intron | 30.0% |
| GGATTATCAGAAGAATCAAA+TGG | - | chr6_3:15351803-15351822 | None:intergenic | 30.0% | |
| ! | GAATTAAGGTTTGAAATTGC+TGG | - | chr6_3:15351993-15352012 | None:intergenic | 30.0% |
| !! | AATCCTTTTTCATGATGAGT+CGG | + | chr6_3:15352516-15352535 | Msa0941520:CDS | 30.0% |
| ACATAAGACCATGTTTGGAA+TGG | + | chr6_3:15351165-15351184 | Msa0941520:CDS | 35.0% | |
| TTTCAGAACCAGAATTGATG+AGG | - | chr6_3:15351265-15351284 | None:intergenic | 35.0% | |
| CACAATCTCAATGTCTATCA+TGG | - | chr6_3:15351471-15351490 | None:intergenic | 35.0% | |
| ATCAACCTTTAGCTACCTTT+CGG | - | chr6_3:15351835-15351854 | None:intergenic | 35.0% | |
| ! | TTTTCGTTCATTGCTCTATG+AGG | + | chr6_3:15352108-15352127 | Msa0941520:CDS | 35.0% |
| CAGGTAAAGATAGTGAAAGT+GGG | + | chr6_3:15352476-15352495 | Msa0941520:CDS | 35.0% | |
| AGGTAAAGATAGTGAAAGTG+GGG | + | chr6_3:15352477-15352496 | Msa0941520:CDS | 35.0% | |
| ACATAAGACCATGTTTGGAA+TGG | + | chr6_3:15351165-15351184 | Msa0941520:CDS | 35.0% | |
| TTTCAGAACCAGAATTGATG+AGG | - | chr6_3:15351265-15351284 | None:intergenic | 35.0% | |
| CACAATCTCAATGTCTATCA+TGG | - | chr6_3:15351471-15351490 | None:intergenic | 35.0% | |
| ATCAACCTTTAGCTACCTTT+CGG | - | chr6_3:15351835-15351854 | None:intergenic | 35.0% | |
| ! | TTTTCGTTCATTGCTCTATG+AGG | + | chr6_3:15352108-15352127 | Msa0941520:CDS | 35.0% |
| CAGGTAAAGATAGTGAAAGT+GGG | + | chr6_3:15352476-15352495 | Msa0941520:CDS | 35.0% | |
| AGGTAAAGATAGTGAAAGTG+GGG | + | chr6_3:15352477-15352496 | Msa0941520:CDS | 35.0% | |
| CACTTGATCCATTCCAAACA+TGG | - | chr6_3:15351176-15351195 | None:intergenic | 40.0% | |
| !! | GTAGCATTAGCTTGTGATTG+AGG | - | chr6_3:15351200-15351219 | None:intergenic | 40.0% |
| CTCATCAACCTCATCAATTC+TGG | + | chr6_3:15351254-15351273 | Msa0941520:CDS | 40.0% | |
| ATGTGTCCCTATGATCTATG+TGG | + | chr6_3:15351340-15351359 | Msa0941520:intron | 40.0% | |
| TGTGTCCCTATGATCTATGT+GGG | + | chr6_3:15351341-15351360 | Msa0941520:intron | 40.0% | |
| ATGTCCCCACATAGATCATA+GGG | - | chr6_3:15351349-15351368 | None:intergenic | 40.0% | |
| !! | TTGTTGTCTCTGAAGTCTTC+TGG | + | chr6_3:15351389-15351408 | Msa0941520:intron | 40.0% |
| ! | TCTGAAGTCTTCTGGTATCA+CGG | + | chr6_3:15351397-15351416 | Msa0941520:intron | 40.0% |
| TCCTTAGGCAATTGAGAGTT+TGG | + | chr6_3:15351620-15351639 | Msa0941520:intron | 40.0% | |
| ACCAAACTCTCAATTGCCTA+AGG | - | chr6_3:15351624-15351643 | None:intergenic | 40.0% | |
| AGAGTTTGGTAAGATCCATG+TGG | + | chr6_3:15351634-15351653 | Msa0941520:intron | 40.0% | |
| TTTGGTAAGATCCATGTGGT+GGG | + | chr6_3:15351638-15351657 | Msa0941520:intron | 40.0% | |
| ATTAACAAACACCCACCACA+TGG | - | chr6_3:15351652-15351671 | None:intergenic | 40.0% | |
| TCTTCTGATAATCCGGAGTT+TGG | + | chr6_3:15351809-15351828 | Msa0941520:intron | 40.0% | |
| AGGATCGTGAACCCTATTTA+TGG | + | chr6_3:15352139-15352158 | Msa0941520:CDS | 40.0% | |
| GGATCGTGAACCCTATTTAT+GGG | + | chr6_3:15352140-15352159 | Msa0941520:CDS | 40.0% | |
| ! | AGTTCTCAACTTTTGACACG+TGG | - | chr6_3:15352309-15352328 | None:intergenic | 40.0% |
| CGTGTCAAAAGTTGAGAACT+CGG | + | chr6_3:15352309-15352328 | Msa0941520:CDS | 40.0% | |
| TTTCACTATCTTTACCTGGC+TGG | - | chr6_3:15352474-15352493 | None:intergenic | 40.0% | |
| CCACTTTCACTATCTTTACC+TGG | - | chr6_3:15352478-15352497 | None:intergenic | 40.0% | |
| CCAGGTAAAGATAGTGAAAG+TGG | + | chr6_3:15352475-15352494 | Msa0941520:CDS | 40.0% | |
| ACTCCGACTCATCATGAAAA+AGG | - | chr6_3:15352522-15352541 | None:intergenic | 40.0% | |
| TGAGTCACAAGCTAAGGTAA+GGG | + | chr6_3:15352549-15352568 | Msa0941520:CDS | 40.0% | |
| CACTTGATCCATTCCAAACA+TGG | - | chr6_3:15351176-15351195 | None:intergenic | 40.0% | |
| !! | GTAGCATTAGCTTGTGATTG+AGG | - | chr6_3:15351200-15351219 | None:intergenic | 40.0% |
| CTCATCAACCTCATCAATTC+TGG | + | chr6_3:15351254-15351273 | Msa0941520:CDS | 40.0% | |
| ATGTGTCCCTATGATCTATG+TGG | + | chr6_3:15351340-15351359 | Msa0941520:intron | 40.0% | |
| TGTGTCCCTATGATCTATGT+GGG | + | chr6_3:15351341-15351360 | Msa0941520:intron | 40.0% | |
| ATGTCCCCACATAGATCATA+GGG | - | chr6_3:15351349-15351368 | None:intergenic | 40.0% | |
| !! | TTGTTGTCTCTGAAGTCTTC+TGG | + | chr6_3:15351389-15351408 | Msa0941520:intron | 40.0% |
| ! | TCTGAAGTCTTCTGGTATCA+CGG | + | chr6_3:15351397-15351416 | Msa0941520:intron | 40.0% |
| TCCTTAGGCAATTGAGAGTT+TGG | + | chr6_3:15351620-15351639 | Msa0941520:intron | 40.0% | |
| ACCAAACTCTCAATTGCCTA+AGG | - | chr6_3:15351624-15351643 | None:intergenic | 40.0% | |
| AGAGTTTGGTAAGATCCATG+TGG | + | chr6_3:15351634-15351653 | Msa0941520:intron | 40.0% | |
| TTTGGTAAGATCCATGTGGT+GGG | + | chr6_3:15351638-15351657 | Msa0941520:intron | 40.0% | |
| ATTAACAAACACCCACCACA+TGG | - | chr6_3:15351652-15351671 | None:intergenic | 40.0% | |
| TCTTCTGATAATCCGGAGTT+TGG | + | chr6_3:15351809-15351828 | Msa0941520:intron | 40.0% | |
| AGGATCGTGAACCCTATTTA+TGG | + | chr6_3:15352139-15352158 | Msa0941520:CDS | 40.0% | |
| GGATCGTGAACCCTATTTAT+GGG | + | chr6_3:15352140-15352159 | Msa0941520:CDS | 40.0% | |
| ! | AGTTCTCAACTTTTGACACG+TGG | - | chr6_3:15352309-15352328 | None:intergenic | 40.0% |
| CGTGTCAAAAGTTGAGAACT+CGG | + | chr6_3:15352309-15352328 | Msa0941520:CDS | 40.0% | |
| TTTCACTATCTTTACCTGGC+TGG | - | chr6_3:15352474-15352493 | None:intergenic | 40.0% | |
| CCACTTTCACTATCTTTACC+TGG | - | chr6_3:15352478-15352497 | None:intergenic | 40.0% | |
| CCAGGTAAAGATAGTGAAAG+TGG | + | chr6_3:15352475-15352494 | Msa0941520:CDS | 40.0% | |
| ACTCCGACTCATCATGAAAA+AGG | - | chr6_3:15352522-15352541 | None:intergenic | 40.0% | |
| TGAGTCACAAGCTAAGGTAA+GGG | + | chr6_3:15352549-15352568 | Msa0941520:CDS | 40.0% | |
| !! | GCTAAGTTTTATGGTCGTGC+TGG | + | chr6_3:15351230-15351249 | Msa0941520:CDS | 45.0% |
| !! | GGTTCTGAAAATCTTCGTCC+TGG | + | chr6_3:15351275-15351294 | Msa0941520:CDS | 45.0% |
| GTGTCCCTATGATCTATGTG+GGG | + | chr6_3:15351342-15351361 | Msa0941520:intron | 45.0% | |
| GATGTCCCCACATAGATCAT+AGG | - | chr6_3:15351350-15351369 | None:intergenic | 45.0% | |
| GTTTGGTAAGATCCATGTGG+TGG | + | chr6_3:15351637-15351656 | Msa0941520:intron | 45.0% | |
| TTTGGCCGAAAGGTAGCTAA+AGG | + | chr6_3:15351827-15351846 | Msa0941520:intron | 45.0% | |
| TCATTGCTCTATGAGGCTTG+TGG | + | chr6_3:15352115-15352134 | Msa0941520:CDS | 45.0% | |
| CATTGCTCTATGAGGCTTGT+GGG | + | chr6_3:15352116-15352135 | Msa0941520:CDS | 45.0% | |
| AACCCTATTTATGGGTCCGT+GGG | + | chr6_3:15352148-15352167 | Msa0941520:CDS | 45.0% | |
| ACCAGACCATAAAAGTCCCA+CGG | - | chr6_3:15352167-15352186 | None:intergenic | 45.0% | |
| ! | GACTTTTATGGTCTGGTAGC+TGG | + | chr6_3:15352170-15352189 | Msa0941520:CDS | 45.0% |
| GGAAGCTGCTGAAAATGAGA+GGG | + | chr6_3:15352255-15352274 | Msa0941520:CDS | 45.0% | |
| CGTATGTCATAGGCCTTGAA+GGG | - | chr6_3:15352286-15352305 | None:intergenic | 45.0% | |
| GTCAAAAGTTGAGAACTCGG+AGG | + | chr6_3:15352312-15352331 | Msa0941520:CDS | 45.0% | |
| AGACTAAGCAGGTTAGGACT+CGG | + | chr6_3:15352335-15352354 | Msa0941520:CDS | 45.0% | |
| CCAACTTCTTTGCTTGGCTT+CGG | - | chr6_3:15352385-15352404 | None:intergenic | 45.0% | |
| CGAAGCCAAGCAAAGAAGTT+GGG | + | chr6_3:15352383-15352402 | Msa0941520:CDS | 45.0% | |
| ! | AAAGAAGTTGGGTCTGGTTC+AGG | + | chr6_3:15352394-15352413 | Msa0941520:CDS | 45.0% |
| ! | AAGAAGTTGGGTCTGGTTCA+GGG | + | chr6_3:15352395-15352414 | Msa0941520:CDS | 45.0% |
| ! | ACGATTCATGGCTTTTGGAC+CGG | - | chr6_3:15352444-15352463 | None:intergenic | 45.0% |
| TGAACCTGAGTCACAAGCTA+AGG | + | chr6_3:15352543-15352562 | Msa0941520:CDS | 45.0% | |
| !! | CTTACCTTAGCTTGTGACTC+AGG | - | chr6_3:15352550-15352569 | None:intergenic | 45.0% |
| CTGAGTCACAAGCTAAGGTA+AGG | + | chr6_3:15352548-15352567 | Msa0941520:CDS | 45.0% | |
| GAGTCACAAGCTAAGGTAAG+GGG | + | chr6_3:15352550-15352569 | Msa0941520:CDS | 45.0% | |
| ATGTACTCCTCATGTGACAC+GGG | - | chr6_3:15352646-15352665 | None:intergenic | 45.0% | |
| CATGTACTCCTCATGTGACA+CGG | - | chr6_3:15352647-15352666 | None:intergenic | 45.0% | |
| !! | GCTAAGTTTTATGGTCGTGC+TGG | + | chr6_3:15351230-15351249 | Msa0941520:CDS | 45.0% |
| !! | GGTTCTGAAAATCTTCGTCC+TGG | + | chr6_3:15351275-15351294 | Msa0941520:CDS | 45.0% |
| GTGTCCCTATGATCTATGTG+GGG | + | chr6_3:15351342-15351361 | Msa0941520:intron | 45.0% | |
| GATGTCCCCACATAGATCAT+AGG | - | chr6_3:15351350-15351369 | None:intergenic | 45.0% | |
| GTTTGGTAAGATCCATGTGG+TGG | + | chr6_3:15351637-15351656 | Msa0941520:intron | 45.0% | |
| TTTGGCCGAAAGGTAGCTAA+AGG | + | chr6_3:15351827-15351846 | Msa0941520:intron | 45.0% | |
| TCATTGCTCTATGAGGCTTG+TGG | + | chr6_3:15352115-15352134 | Msa0941520:CDS | 45.0% | |
| CATTGCTCTATGAGGCTTGT+GGG | + | chr6_3:15352116-15352135 | Msa0941520:CDS | 45.0% | |
| AACCCTATTTATGGGTCCGT+GGG | + | chr6_3:15352148-15352167 | Msa0941520:CDS | 45.0% | |
| ACCAGACCATAAAAGTCCCA+CGG | - | chr6_3:15352167-15352186 | None:intergenic | 45.0% | |
| ! | GACTTTTATGGTCTGGTAGC+TGG | + | chr6_3:15352170-15352189 | Msa0941520:CDS | 45.0% |
| GGAAGCTGCTGAAAATGAGA+GGG | + | chr6_3:15352255-15352274 | Msa0941520:CDS | 45.0% | |
| CGTATGTCATAGGCCTTGAA+GGG | - | chr6_3:15352286-15352305 | None:intergenic | 45.0% | |
| GTCAAAAGTTGAGAACTCGG+AGG | + | chr6_3:15352312-15352331 | Msa0941520:CDS | 45.0% | |
| AGACTAAGCAGGTTAGGACT+CGG | + | chr6_3:15352335-15352354 | Msa0941520:CDS | 45.0% | |
| CCAACTTCTTTGCTTGGCTT+CGG | - | chr6_3:15352385-15352404 | None:intergenic | 45.0% | |
| CGAAGCCAAGCAAAGAAGTT+GGG | + | chr6_3:15352383-15352402 | Msa0941520:CDS | 45.0% | |
| ! | AAAGAAGTTGGGTCTGGTTC+AGG | + | chr6_3:15352394-15352413 | Msa0941520:CDS | 45.0% |
| ! | AAGAAGTTGGGTCTGGTTCA+GGG | + | chr6_3:15352395-15352414 | Msa0941520:CDS | 45.0% |
| ! | ACGATTCATGGCTTTTGGAC+CGG | - | chr6_3:15352444-15352463 | None:intergenic | 45.0% |
| TGAACCTGAGTCACAAGCTA+AGG | + | chr6_3:15352543-15352562 | Msa0941520:CDS | 45.0% | |
| !! | CTTACCTTAGCTTGTGACTC+AGG | - | chr6_3:15352550-15352569 | None:intergenic | 45.0% |
| CTGAGTCACAAGCTAAGGTA+AGG | + | chr6_3:15352548-15352567 | Msa0941520:CDS | 45.0% | |
| GAGTCACAAGCTAAGGTAAG+GGG | + | chr6_3:15352550-15352569 | Msa0941520:CDS | 45.0% | |
| ATGTACTCCTCATGTGACAC+GGG | - | chr6_3:15352646-15352665 | None:intergenic | 45.0% | |
| CATGTACTCCTCATGTGACA+CGG | - | chr6_3:15352647-15352666 | None:intergenic | 45.0% | |
| TAATCCGGAGTTTGGCCGAA+AGG | + | chr6_3:15351817-15351836 | Msa0941520:intron | 50.0% | |
| GAACCCTATTTATGGGTCCG+TGG | + | chr6_3:15352147-15352166 | Msa0941520:CDS | 50.0% | |
| GTCCCACGGACCCATAAATA+GGG | - | chr6_3:15352153-15352172 | None:intergenic | 50.0% | |
| AGTCCCACGGACCCATAAAT+AGG | - | chr6_3:15352154-15352173 | None:intergenic | 50.0% | |
| ! | ATGGGTCCGTGGGACTTTTA+TGG | + | chr6_3:15352158-15352177 | Msa0941520:CDS | 50.0% |
| ! | TCCGTGGGACTTTTATGGTC+TGG | + | chr6_3:15352163-15352182 | Msa0941520:CDS | 50.0% |
| CTTCAAAACGGCTTCCACAG+CGG | - | chr6_3:15352209-15352228 | None:intergenic | 50.0% | |
| !! | GCTGTGGAAGCCGTTTTGAA+GGG | + | chr6_3:15352208-15352227 | Msa0941520:CDS | 50.0% |
| TCCGAAGCTATCGGAGTGAT+CGG | - | chr6_3:15352238-15352257 | None:intergenic | 50.0% | |
| TCAGCAGCTTCCGAAGCTAT+CGG | - | chr6_3:15352247-15352266 | None:intergenic | 50.0% | |
| CGGAAGCTGCTGAAAATGAG+AGG | + | chr6_3:15352254-15352273 | Msa0941520:CDS | 50.0% | |
| TGTCATAGGCCTTGAAGGGT+GGG | - | chr6_3:15352282-15352301 | None:intergenic | 50.0% | |
| ATGTCATAGGCCTTGAAGGG+TGG | - | chr6_3:15352283-15352302 | None:intergenic | 50.0% | |
| GCGTATGTCATAGGCCTTGA+AGG | - | chr6_3:15352287-15352306 | None:intergenic | 50.0% | |
| TGACACGTGGCGTATGTCAT+AGG | - | chr6_3:15352296-15352315 | None:intergenic | 50.0% | |
| TTTGCTTGGCTTCGGCTTCA+TGG | - | chr6_3:15352377-15352396 | None:intergenic | 50.0% | |
| CCGAAGCCAAGCAAAGAAGT+TGG | + | chr6_3:15352382-15352401 | Msa0941520:CDS | 50.0% | |
| CCAGACCCAACTTCTTTGCT+TGG | - | chr6_3:15352391-15352410 | None:intergenic | 50.0% | |
| CCAAGCAAAGAAGTTGGGTC+TGG | + | chr6_3:15352388-15352407 | Msa0941520:CDS | 50.0% | |
| ! | GTCTGGTTCAGGGTCCAATT+CGG | + | chr6_3:15352405-15352424 | Msa0941520:CDS | 50.0% |
| GTCCAATTCGGCCAAAGAGA+TGG | + | chr6_3:15352417-15352436 | Msa0941520:CDS | 50.0% | |
| GTCCATCTCTTTGGCCGAAT+TGG | - | chr6_3:15352422-15352441 | None:intergenic | 50.0% | |
| ATTCGGCCAAAGAGATGGAC+CGG | + | chr6_3:15352422-15352441 | Msa0941520:CDS | 50.0% | |
| TTTGGACCGGTCCATCTCTT+TGG | - | chr6_3:15352431-15352450 | None:intergenic | 50.0% | |
| ! | CAGCGACGATTCATGGCTTT+TGG | - | chr6_3:15352449-15352468 | None:intergenic | 50.0% |
| TAGTGAAAGTGGGGTCTCTG+TGG | + | chr6_3:15352486-15352505 | Msa0941520:CDS | 50.0% | |
| TATCGAACCCGTGTCACATG+AGG | + | chr6_3:15352636-15352655 | Msa0941520:CDS | 50.0% | |
| TAATCCGGAGTTTGGCCGAA+AGG | + | chr6_3:15351817-15351836 | Msa0941520:intron | 50.0% | |
| GAACCCTATTTATGGGTCCG+TGG | + | chr6_3:15352147-15352166 | Msa0941520:CDS | 50.0% | |
| GTCCCACGGACCCATAAATA+GGG | - | chr6_3:15352153-15352172 | None:intergenic | 50.0% | |
| AGTCCCACGGACCCATAAAT+AGG | - | chr6_3:15352154-15352173 | None:intergenic | 50.0% | |
| ! | ATGGGTCCGTGGGACTTTTA+TGG | + | chr6_3:15352158-15352177 | Msa0941520:CDS | 50.0% |
| ! | TCCGTGGGACTTTTATGGTC+TGG | + | chr6_3:15352163-15352182 | Msa0941520:CDS | 50.0% |
| CTTCAAAACGGCTTCCACAG+CGG | - | chr6_3:15352209-15352228 | None:intergenic | 50.0% | |
| !! | GCTGTGGAAGCCGTTTTGAA+GGG | + | chr6_3:15352208-15352227 | Msa0941520:CDS | 50.0% |
| TCCGAAGCTATCGGAGTGAT+CGG | - | chr6_3:15352238-15352257 | None:intergenic | 50.0% | |
| TCAGCAGCTTCCGAAGCTAT+CGG | - | chr6_3:15352247-15352266 | None:intergenic | 50.0% | |
| CGGAAGCTGCTGAAAATGAG+AGG | + | chr6_3:15352254-15352273 | Msa0941520:CDS | 50.0% | |
| TGTCATAGGCCTTGAAGGGT+GGG | - | chr6_3:15352282-15352301 | None:intergenic | 50.0% | |
| ATGTCATAGGCCTTGAAGGG+TGG | - | chr6_3:15352283-15352302 | None:intergenic | 50.0% | |
| GCGTATGTCATAGGCCTTGA+AGG | - | chr6_3:15352287-15352306 | None:intergenic | 50.0% | |
| TGACACGTGGCGTATGTCAT+AGG | - | chr6_3:15352296-15352315 | None:intergenic | 50.0% | |
| TTTGCTTGGCTTCGGCTTCA+TGG | - | chr6_3:15352377-15352396 | None:intergenic | 50.0% | |
| CCGAAGCCAAGCAAAGAAGT+TGG | + | chr6_3:15352382-15352401 | Msa0941520:CDS | 50.0% | |
| CCAGACCCAACTTCTTTGCT+TGG | - | chr6_3:15352391-15352410 | None:intergenic | 50.0% | |
| CCAAGCAAAGAAGTTGGGTC+TGG | + | chr6_3:15352388-15352407 | Msa0941520:CDS | 50.0% | |
| ! | GTCTGGTTCAGGGTCCAATT+CGG | + | chr6_3:15352405-15352424 | Msa0941520:CDS | 50.0% |
| GTCCAATTCGGCCAAAGAGA+TGG | + | chr6_3:15352417-15352436 | Msa0941520:CDS | 50.0% | |
| GTCCATCTCTTTGGCCGAAT+TGG | - | chr6_3:15352422-15352441 | None:intergenic | 50.0% | |
| ATTCGGCCAAAGAGATGGAC+CGG | + | chr6_3:15352422-15352441 | Msa0941520:CDS | 50.0% | |
| TTTGGACCGGTCCATCTCTT+TGG | - | chr6_3:15352431-15352450 | None:intergenic | 50.0% | |
| ! | CAGCGACGATTCATGGCTTT+TGG | - | chr6_3:15352449-15352468 | None:intergenic | 50.0% |
| TAGTGAAAGTGGGGTCTCTG+TGG | + | chr6_3:15352486-15352505 | Msa0941520:CDS | 50.0% | |
| TATCGAACCCGTGTCACATG+AGG | + | chr6_3:15352636-15352655 | Msa0941520:CDS | 50.0% | |
| GCTACCTTTCGGCCAAACTC+CGG | - | chr6_3:15351824-15351843 | None:intergenic | 55.0% | |
| TGCTCTATGAGGCTTGTGGG+AGG | + | chr6_3:15352119-15352138 | Msa0941520:CDS | 55.0% | |
| !! | CGCTGTGGAAGCCGTTTTGA+AGG | + | chr6_3:15352207-15352226 | Msa0941520:CDS | 55.0% |
| !! | GATCGGCTCGCCCTTCAAAA+CGG | - | chr6_3:15352221-15352240 | None:intergenic | 55.0% |
| GCCGATCACTCCGATAGCTT+CGG | + | chr6_3:15352234-15352253 | Msa0941520:CDS | 55.0% | |
| GTCATAGGCCTTGAAGGGTG+GGG | - | chr6_3:15352281-15352300 | None:intergenic | 55.0% | |
| GAACTCGGAGGAGACTAAGC+AGG | + | chr6_3:15352324-15352343 | Msa0941520:CDS | 55.0% | |
| CGGAGGAGACTAAGCAGGTT+AGG | + | chr6_3:15352329-15352348 | Msa0941520:CDS | 55.0% | |
| CTTCATGGCTCGTCTGATGC+GGG | - | chr6_3:15352362-15352381 | None:intergenic | 55.0% | |
| GCTTCATGGCTCGTCTGATG+CGG | - | chr6_3:15352363-15352382 | None:intergenic | 55.0% | |
| TAAGGTAAGGGGTCGAGCTG+AGG | + | chr6_3:15352561-15352580 | Msa0941520:CDS | 55.0% | |
| AAGGTAAGGGGTCGAGCTGA+GGG | + | chr6_3:15352562-15352581 | Msa0941520:CDS | 55.0% | |
| ! | CTGAGGAAGGTGTGAGCGAT+GGG | + | chr6_3:15352590-15352609 | Msa0941520:CDS | 55.0% |
| ! | TGAGGAAGGTGTGAGCGATG+GGG | + | chr6_3:15352591-15352610 | Msa0941520:CDS | 55.0% |
| GCTACCTTTCGGCCAAACTC+CGG | - | chr6_3:15351824-15351843 | None:intergenic | 55.0% | |
| TGCTCTATGAGGCTTGTGGG+AGG | + | chr6_3:15352119-15352138 | Msa0941520:CDS | 55.0% | |
| !! | CGCTGTGGAAGCCGTTTTGA+AGG | + | chr6_3:15352207-15352226 | Msa0941520:CDS | 55.0% |
| !! | GATCGGCTCGCCCTTCAAAA+CGG | - | chr6_3:15352221-15352240 | None:intergenic | 55.0% |
| GCCGATCACTCCGATAGCTT+CGG | + | chr6_3:15352234-15352253 | Msa0941520:CDS | 55.0% | |
| GTCATAGGCCTTGAAGGGTG+GGG | - | chr6_3:15352281-15352300 | None:intergenic | 55.0% | |
| GAACTCGGAGGAGACTAAGC+AGG | + | chr6_3:15352324-15352343 | Msa0941520:CDS | 55.0% | |
| CGGAGGAGACTAAGCAGGTT+AGG | + | chr6_3:15352329-15352348 | Msa0941520:CDS | 55.0% | |
| CTTCATGGCTCGTCTGATGC+GGG | - | chr6_3:15352362-15352381 | None:intergenic | 55.0% | |
| GCTTCATGGCTCGTCTGATG+CGG | - | chr6_3:15352363-15352382 | None:intergenic | 55.0% | |
| TAAGGTAAGGGGTCGAGCTG+AGG | + | chr6_3:15352561-15352580 | Msa0941520:CDS | 55.0% | |
| AAGGTAAGGGGTCGAGCTGA+GGG | + | chr6_3:15352562-15352581 | Msa0941520:CDS | 55.0% | |
| ! | CTGAGGAAGGTGTGAGCGAT+GGG | + | chr6_3:15352590-15352609 | Msa0941520:CDS | 55.0% |
| ! | TGAGGAAGGTGTGAGCGATG+GGG | + | chr6_3:15352591-15352610 | Msa0941520:CDS | 55.0% |
| CTTCCACAGCGGCTTGACAG+AGG | - | chr6_3:15352198-15352217 | None:intergenic | 60.0% | |
| ! | GCTGGCTCAGCGACGATTCA+TGG | - | chr6_3:15352456-15352475 | None:intergenic | 60.0% |
| CGCTCACACCTTCCTCAGCT+TGG | - | chr6_3:15352588-15352607 | None:intergenic | 60.0% | |
| ! | GCTGAGGAAGGTGTGAGCGA+TGG | + | chr6_3:15352589-15352608 | Msa0941520:CDS | 60.0% |
| ! | GAAGGTGTGAGCGATGGGGT+TGG | + | chr6_3:15352595-15352614 | Msa0941520:CDS | 60.0% |
| !! | TGTGAGCGATGGGGTTGGCT+TGG | + | chr6_3:15352600-15352619 | Msa0941520:CDS | 60.0% |
| !! | ATGGGGTTGGCTTGGAGCTG+AGG | + | chr6_3:15352608-15352627 | Msa0941520:CDS | 60.0% |
| !! | GTTGGCTTGGAGCTGAGGCT+TGG | + | chr6_3:15352613-15352632 | Msa0941520:CDS | 60.0% |
| CTTCCACAGCGGCTTGACAG+AGG | - | chr6_3:15352198-15352217 | None:intergenic | 60.0% | |
| ! | GCTGGCTCAGCGACGATTCA+TGG | - | chr6_3:15352456-15352475 | None:intergenic | 60.0% |
| CGCTCACACCTTCCTCAGCT+TGG | - | chr6_3:15352588-15352607 | None:intergenic | 60.0% | |
| ! | GCTGAGGAAGGTGTGAGCGA+TGG | + | chr6_3:15352589-15352608 | Msa0941520:CDS | 60.0% |
| ! | GAAGGTGTGAGCGATGGGGT+TGG | + | chr6_3:15352595-15352614 | Msa0941520:CDS | 60.0% |
| !! | TGTGAGCGATGGGGTTGGCT+TGG | + | chr6_3:15352600-15352619 | Msa0941520:CDS | 60.0% |
| !! | ATGGGGTTGGCTTGGAGCTG+AGG | + | chr6_3:15352608-15352627 | Msa0941520:CDS | 60.0% |
| !! | GTTGGCTTGGAGCTGAGGCT+TGG | + | chr6_3:15352613-15352632 | Msa0941520:CDS | 60.0% |
| GCACCTCTGTCAAGCCGCTG+TGG | + | chr6_3:15352192-15352211 | Msa0941520:CDS | 65.0% | |
| TGAGAGGGCCCCACCCTTCA+AGG | + | chr6_3:15352270-15352289 | Msa0941520:CDS | 65.0% | |
| GAATCGTCGCTGAGCCAGCC+AGG | + | chr6_3:15352457-15352476 | Msa0941520:CDS | 65.0% | |
| TCGAGCTGAGGGCCAAGCTG+AGG | + | chr6_3:15352573-15352592 | Msa0941520:CDS | 65.0% | |
| GCTGAGGGCCAAGCTGAGGA+AGG | + | chr6_3:15352577-15352596 | Msa0941520:CDS | 65.0% | |
| GCACCTCTGTCAAGCCGCTG+TGG | + | chr6_3:15352192-15352211 | Msa0941520:CDS | 65.0% | |
| TGAGAGGGCCCCACCCTTCA+AGG | + | chr6_3:15352270-15352289 | Msa0941520:CDS | 65.0% | |
| GAATCGTCGCTGAGCCAGCC+AGG | + | chr6_3:15352457-15352476 | Msa0941520:CDS | 65.0% | |
| TCGAGCTGAGGGCCAAGCTG+AGG | + | chr6_3:15352573-15352592 | Msa0941520:CDS | 65.0% | |
| GCTGAGGGCCAAGCTGAGGA+AGG | + | chr6_3:15352577-15352596 | Msa0941520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 15351107 | 15352666 | 15351107 | ID=Msa0941520;Name=Msa0941520 |
| chr6_3 | mRNA | 15351107 | 15352666 | 15351107 | ID=Msa0941520-mRNA-1;Parent=Msa0941520;Name=Msa0941520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|251 |
| chr6_3 | exon | 15351107 | 15351296 | 15351107 | ID=Msa0941520-mRNA-1:exon:4673;Parent=Msa0941520-mRNA-1 |
| chr6_3 | exon | 15352104 | 15352666 | 15352104 | ID=Msa0941520-mRNA-1:exon:4674;Parent=Msa0941520-mRNA-1 |
| chr6_3 | CDS | 15351107 | 15351296 | 15351107 | ID=Msa0941520-mRNA-1:cds;Parent=Msa0941520-mRNA-1 |
| chr6_3 | CDS | 15352104 | 15352666 | 15352104 | ID=Msa0941520-mRNA-1:cds;Parent=Msa0941520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
