Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068580 | RHN47182.1 | 71.947 | 303 | 77 | 3 | 2 | 297 | 4 | 305 | 1.52e-143 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068580 | A0A396H1E7 | 71.947 | 303 | 77 | 3 | 2 | 297 | 4 | 305 | 7.28e-144 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0678130 | Msa1068580 | 0.817170 | 3.788472e-52 | -8.615850e-47 |
| Msa0715420 | Msa1068580 | 0.807811 | 4.211821e-50 | -8.615850e-47 |
| Msa0798010 | Msa1068580 | 0.803649 | 3.152537e-49 | -8.615850e-47 |
| Msa0798310 | Msa1068580 | 0.807308 | 5.385507e-50 | -8.615850e-47 |
| Msa0814710 | Msa1068580 | 0.804400 | 2.199625e-49 | -8.615850e-47 |
| Msa0836850 | Msa1068580 | 0.816581 | 5.137799e-52 | -8.615850e-47 |
| Msa1068570 | Msa1068580 | 0.806235 | 9.079183e-50 | -8.615850e-47 |
| Msa1068580 | Msa1156560 | 0.808910 | 2.455239e-50 | -8.615850e-47 |
| Msa1068580 | Msa1156570 | 0.921745 | 2.412346e-88 | -8.615850e-47 |
| Msa1068580 | Msa1321050 | 0.812021 | 5.227922e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068580 | MtrunA17_Chr7g0250171 | 71.947 | 303 | 77 | 3 | 2 | 297 | 4 | 305 | 1.40e-147 | 416 |
| Msa1068580 | MtrunA17_Chr7g0250191 | 68.056 | 216 | 59 | 4 | 83 | 295 | 3 | 211 | 1.60e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTATATGCGTCATTTC+TGG | 0.132069 | 7_2:-63601831 | None:intergenic |
| ACATCAACATCTTCAAATTT+TGG | 0.154340 | 7_2:-63602125 | None:intergenic |
| CTAATTTGGTTTGCAACTTT+AGG | 0.182380 | 7_2:+63602020 | Msa1068580:CDS |
| TGTTCAAGCTGCCTCTAATT+TGG | 0.218520 | 7_2:+63602006 | Msa1068580:CDS |
| TAATTTGGTTTGCAACTTTA+GGG | 0.221416 | 7_2:+63602021 | Msa1068580:CDS |
| ATGTCAGTATCCCACAAATA+AGG | 0.248587 | 7_2:-63602058 | None:intergenic |
| GATTGTTGTAAGTAGAATTT+AGG | 0.277117 | 7_2:-63599582 | None:intergenic |
| GAAGTATCACTTGGCCTTAC+TGG | 0.314175 | 7_2:+63601671 | Msa1068580:CDS |
| AATCACTAGTACTTCCATTT+GGG | 0.332688 | 7_2:+63601787 | Msa1068580:CDS |
| CAATCACTAGTACTTCCATT+TGG | 0.355522 | 7_2:+63601786 | Msa1068580:CDS |
| GGAAAGTCCTTCTCAGTATA+AGG | 0.357312 | 7_2:+63599299 | Msa1068580:CDS |
| AATTGCTCTCACAACATTCA+TGG | 0.375300 | 7_2:+63599278 | Msa1068580:CDS |
| GTAGTATGTGTCAGTTTCCT+TGG | 0.375510 | 7_2:+63601693 | Msa1068580:CDS |
| CAGCTAGATTGCTGTCGTTC+GGG | 0.388554 | 7_2:-63599558 | None:intergenic |
| GTTCGCAAGGCTTCAAAGAT+TGG | 0.388942 | 7_2:+63601969 | Msa1068580:CDS |
| TTGGGCTTTCCCTTATTTGT+GGG | 0.389548 | 7_2:+63602048 | Msa1068580:CDS |
| TACTATTAGCTTACTTGAGC+TGG | 0.394727 | 7_2:+63602081 | Msa1068580:CDS |
| ACAATAAAGCTTGGTCTACC+TGG | 0.395524 | 7_2:+63599324 | Msa1068580:CDS |
| TCAGCTAGATTGCTGTCGTT+CGG | 0.400416 | 7_2:-63599559 | None:intergenic |
| AGCTGGAGGTTTCTATCTAA+AGG | 0.404098 | 7_2:+63602098 | Msa1068580:CDS |
| CCCAATTGAAAATATTCAAA+TGG | 0.405093 | 7_2:-63601741 | None:intergenic |
| AAAGTTGCAAACCAAATTAG+AGG | 0.408137 | 7_2:-63602017 | None:intergenic |
| GTTGGGCTTTCCCTTATTTG+TGG | 0.414187 | 7_2:+63602047 | Msa1068580:CDS |
| GCTGGAGGTTTCTATCTAAA+GGG | 0.425018 | 7_2:+63602099 | Msa1068580:CDS |
| GAAGCCTTGCGAACCAGCTC+GGG | 0.426460 | 7_2:-63601960 | None:intergenic |
| GCTTCAAATGCTTCCCCAAA+TGG | 0.433308 | 7_2:-63601801 | None:intergenic |
| TTGCAACTTTAGGGGCCGTT+GGG | 0.438171 | 7_2:+63602030 | Msa1068580:CDS |
| ATAGATGCTGAATCATAATC+AGG | 0.453987 | 7_2:-63599475 | None:intergenic |
| AAACGTGCACATGGTGGCGG+TGG | 0.461880 | 7_2:-63599068 | None:intergenic |
| TTTGCAACTTTAGGGGCCGT+TGG | 0.466143 | 7_2:+63602029 | Msa1068580:CDS |
| AAATTCTACTTACAACAATC+AGG | 0.468447 | 7_2:+63599585 | Msa1068580:CDS |
| TGTCAGTATCCCACAAATAA+GGG | 0.470795 | 7_2:-63602057 | None:intergenic |
| ACAAACTAAAGAAGCACAAT+GGG | 0.475638 | 7_2:-63599204 | None:intergenic |
| CTTTCCCGAGCTGGTTCGCA+AGG | 0.485434 | 7_2:+63601956 | Msa1068580:CDS |
| TCAAAGATTGGTGTTGATTG+TGG | 0.504309 | 7_2:+63601981 | Msa1068580:CDS |
| TGAAGCCTTGCGAACCAGCT+CGG | 0.505111 | 7_2:-63601961 | None:intergenic |
| ATAAAGAAAATCTGCAGTCC+AGG | 0.505330 | 7_2:-63601903 | None:intergenic |
| CATTCCTCCGAAGTATCACT+TGG | 0.516165 | 7_2:+63601662 | Msa1068580:CDS |
| ATCTGCAGTCCAGGTTGTAG+TGG | 0.522511 | 7_2:-63601894 | None:intergenic |
| TTGCTGTCGTTCGGGTAAGA+AGG | 0.524888 | 7_2:-63599550 | None:intergenic |
| TCAATACTAACAGCATGATA+AGG | 0.533799 | 7_2:-63599517 | None:intergenic |
| ATTGTGGCCTTATACTGAGA+AGG | 0.537066 | 7_2:-63599306 | None:intergenic |
| TATAAGGCCACAATAAAGCT+TGG | 0.551579 | 7_2:+63599315 | Msa1068580:CDS |
| TTGGTTGTTCCACTACAACC+TGG | 0.556558 | 7_2:+63601885 | Msa1068580:CDS |
| AACGTGCACATGGTGGCGGT+GGG | 0.556629 | 7_2:-63599067 | None:intergenic |
| AAAATTTAGGAAACACCAAA+CGG | 0.557256 | 7_2:+63601580 | Msa1068580:CDS |
| AATTTGGTTTGCAACTTTAG+GGG | 0.569231 | 7_2:+63602022 | Msa1068580:CDS |
| ACTGACACATACTACCAGTA+AGG | 0.577505 | 7_2:-63601685 | None:intergenic |
| AACAAACTAAAGAAGCACAA+TGG | 0.581852 | 7_2:-63599205 | None:intergenic |
| TGGGGTTAAACAAGATTCAT+CGG | 0.582297 | 7_2:-63599048 | None:intergenic |
| AGTAAGGCCAAGTGATACTT+CGG | 0.588305 | 7_2:-63601669 | None:intergenic |
| GGATGGAACTGAGGATATGA+TGG | 0.588658 | 7_2:+63602179 | Msa1068580:exon |
| GTGAGAGCAATTTCTCGTGA+AGG | 0.588885 | 7_2:-63599267 | None:intergenic |
| TTGTTTAGTGCATAAAGCAA+AGG | 0.589496 | 7_2:-63602353 | None:intergenic |
| ATCATGCTGTTAGTATTGAG+TGG | 0.592210 | 7_2:+63599521 | Msa1068580:CDS |
| AGAAAACGTGCACATGGTGG+CGG | 0.592251 | 7_2:-63599071 | None:intergenic |
| TATTAGCTTACTTGAGCTGG+AGG | 0.596182 | 7_2:+63602084 | Msa1068580:CDS |
| AGGTAGACCAAGCTTTATTG+TGG | 0.597597 | 7_2:-63599322 | None:intergenic |
| CAATAAAGCTTGGTCTACCT+GGG | 0.602941 | 7_2:+63599325 | Msa1068580:CDS |
| ATCACTAGTACTTCCATTTG+GGG | 0.606040 | 7_2:+63601788 | Msa1068580:CDS |
| TTGAAAATATTCAAATGGAG+CGG | 0.606455 | 7_2:-63601736 | None:intergenic |
| AGAAGCACAATGGGAAACAG+TGG | 0.609168 | 7_2:-63599195 | None:intergenic |
| TATCTCAAACAGTAGACAGA+AGG | 0.618745 | 7_2:+63599435 | Msa1068580:intron |
| ACAAATAAGGGAAAGCCCAA+CGG | 0.623964 | 7_2:-63602045 | None:intergenic |
| GTATAAAGAAAACGTGCACA+TGG | 0.642424 | 7_2:-63599077 | None:intergenic |
| AATGGAAGTACTAGTGATTG+TGG | 0.651991 | 7_2:-63601783 | None:intergenic |
| ATATGATGGTGATTTAAACG+TGG | 0.673692 | 7_2:+63602193 | Msa1068580:three_prime_UTR |
| ACGTGCACATGGTGGCGGTG+GGG | 0.675721 | 7_2:-63599066 | None:intergenic |
| AAGGCCAAGTGATACTTCGG+AGG | 0.684694 | 7_2:-63601666 | None:intergenic |
| TGATGGTGATTTAAACGTGG+AGG | 0.697901 | 7_2:+63602196 | Msa1068580:three_prime_UTR |
| TAAAGAAAACGTGCACATGG+TGG | 0.711877 | 7_2:-63599074 | None:intergenic |
| GGAAGTACTAGTGATTGTGG+TGG | 0.755956 | 7_2:-63601780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATTTACTTTAATG+AGG | + | chr7_2:63599897-63599916 | Msa1068580:intron | 10.0% |
| !! | TATTATATTTACTTTAATGA+GGG | + | chr7_2:63599898-63599917 | Msa1068580:intron | 10.0% |
| !!! | TTAGTTTTTCTTAAAATTAA+AGG | - | chr7_2:63601429-63601448 | None:intergenic | 10.0% |
| !!! | TCCAAATATTTTTTATAAAT+AGG | + | chr7_2:63602313-63602332 | Msa1068580:three_prime_UTR | 10.0% |
| !! | TCCTATTTATAAAAAATATT+TGG | - | chr7_2:63602317-63602336 | None:intergenic | 10.0% |
| !!! | TTTAGAATTATTTAATTTCG+TGG | - | chr7_2:63599876-63599895 | None:intergenic | 15.0% |
| !! | TTAAGTAAGAGAATAAATAC+TGG | - | chr7_2:63599372-63599391 | None:intergenic | 20.0% |
| !! | TCTATATAAAATATCTTCAC+TGG | + | chr7_2:63599996-63600015 | Msa1068580:intron | 20.0% |
| !!! | CCACAAAAAAAATTAGTTTT+TGG | - | chr7_2:63600149-63600168 | None:intergenic | 20.0% |
| !!! | CCAAAAACTAATTTTTTTTG+TGG | + | chr7_2:63600146-63600165 | Msa1068580:intron | 20.0% |
| !! | ATGAACTCTCAAAAATAAAA+TGG | - | chr7_2:63600217-63600236 | None:intergenic | 20.0% |
| !! | TTAGACATAGAATTATGATT+AGG | - | chr7_2:63601349-63601368 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAAAACTAAAGCA+TGG | + | chr7_2:63601433-63601452 | Msa1068580:intron | 20.0% |
| !! | TTTAAGAAAAACTAAAGCAT+GGG | + | chr7_2:63601434-63601453 | Msa1068580:intron | 20.0% |
| !!! | CCTAAATTTTTCAAGTATAA+AGG | - | chr7_2:63601570-63601589 | None:intergenic | 20.0% |
| !! | CCTTTATACTTGAAAAATTT+AGG | + | chr7_2:63601567-63601586 | Msa1068580:CDS | 20.0% |
| !!! | TCCATTTGAATATTTTCAAT+TGG | + | chr7_2:63601740-63601759 | Msa1068580:CDS | 20.0% |
| !!! | CCATTTGAATATTTTCAATT+GGG | + | chr7_2:63601741-63601760 | Msa1068580:CDS | 20.0% |
| !! | CAACAAAAATTGATGTAATT+TGG | - | chr7_2:63602292-63602311 | None:intergenic | 20.0% |
| ! | GATTGTTGTAAGTAGAATTT+AGG | - | chr7_2:63599585-63599604 | None:intergenic | 25.0% |
| ! | AAATTCTACTTACAACAATC+AGG | + | chr7_2:63599585-63599604 | Msa1068580:CDS | 25.0% |
| !!! | TTATTAGAAGCACTTTGTAT+AGG | - | chr7_2:63599616-63599635 | None:intergenic | 25.0% |
| ! | TGCTTCTAATAAAATGTTAC+TGG | + | chr7_2:63599624-63599643 | Msa1068580:intron | 25.0% |
| ! | GCATATATTCATCTAATTCA+AGG | - | chr7_2:63599655-63599674 | None:intergenic | 25.0% |
| !! | TATATGCTGTTTATTCTTCA+AGG | + | chr7_2:63599668-63599687 | Msa1068580:intron | 25.0% |
| !!! | ATATATATAGTTTTGACTCG+TGG | + | chr7_2:63599740-63599759 | Msa1068580:intron | 25.0% |
| ! | CTAAAGAATGATATAGTTTG+AGG | + | chr7_2:63599946-63599965 | Msa1068580:intron | 25.0% |
| ! | ATACATTATCCTACATCATA+TGG | - | chr7_2:63600240-63600259 | None:intergenic | 25.0% |
| !!! | AATTGATTTTTCATGCTTCT+AGG | + | chr7_2:63600569-63600588 | Msa1068580:intron | 25.0% |
| !!! | TAGTCATATTGCTATTTACT+TGG | + | chr7_2:63600722-63600741 | Msa1068580:intron | 25.0% |
| ! | TTCATCTATTGCCATATAAA+AGG | + | chr7_2:63600778-63600797 | Msa1068580:intron | 25.0% |
| ! | TCATCTATTGCCATATAAAA+GGG | + | chr7_2:63600779-63600798 | Msa1068580:intron | 25.0% |
| ! | ACAAAGACTTTAAGCTATAT+AGG | + | chr7_2:63600831-63600850 | Msa1068580:intron | 25.0% |
| ! | CTTTAAGCTATATAGGTTTA+TGG | + | chr7_2:63600838-63600857 | Msa1068580:intron | 25.0% |
| !!! | CACTGAACTTAAAAGTATTT+CGG | - | chr7_2:63601045-63601064 | None:intergenic | 25.0% |
| !!! | TTTTTTGCCAATTAATCTAG+CGG | + | chr7_2:63601166-63601185 | Msa1068580:intron | 25.0% |
| !!! | ATCACACATTTTTTAAGATG+TGG | + | chr7_2:63601193-63601212 | Msa1068580:intron | 25.0% |
| ! | AATGTAGTTTCAGAAGAATA+TGG | - | chr7_2:63601499-63601518 | None:intergenic | 25.0% |
| !! | GATATTTCATGTTTTTCTTC+AGG | + | chr7_2:63601524-63601543 | Msa1068580:intron | 25.0% |
| ! | AAAATTTAGGAAACACCAAA+CGG | + | chr7_2:63601580-63601599 | Msa1068580:CDS | 25.0% |
| ! | TTGAAAATATTCAAATGGAG+CGG | - | chr7_2:63601739-63601758 | None:intergenic | 25.0% |
| ! | CCCAATTGAAAATATTCAAA+TGG | - | chr7_2:63601744-63601763 | None:intergenic | 25.0% |
| !!! | AGTTCATGTTGTGTTATTTT+CGG | + | chr7_2:63601853-63601872 | Msa1068580:CDS | 25.0% |
| !!! | TAATTTGGTTTGCAACTTTA+GGG | + | chr7_2:63602021-63602040 | Msa1068580:CDS | 25.0% |
| !! | ACATCAACATCTTCAAATTT+TGG | - | chr7_2:63602128-63602147 | None:intergenic | 25.0% |
| !! | GATGTTGATGTTAATTTTGA+TGG | + | chr7_2:63602137-63602156 | Msa1068580:CDS | 25.0% |
| ! | ACAAACTAAAGAAGCACAAT+GGG | - | chr7_2:63599207-63599226 | None:intergenic | 30.0% |
| ! | AACAAACTAAAGAAGCACAA+TGG | - | chr7_2:63599208-63599227 | None:intergenic | 30.0% |
| ! | CATGAATCAAAATTTTACCC+AGG | - | chr7_2:63599345-63599364 | None:intergenic | 30.0% |
| AGTAAGAGAATAAATACTGG+TGG | - | chr7_2:63599369-63599388 | None:intergenic | 30.0% | |
| ATAGATGCTGAATCATAATC+AGG | - | chr7_2:63599478-63599497 | None:intergenic | 30.0% | |
| TCAATACTAACAGCATGATA+AGG | - | chr7_2:63599520-63599539 | None:intergenic | 30.0% | |
| GATAATGTATACCACAATGT+TGG | + | chr7_2:63600250-63600269 | Msa1068580:intron | 30.0% | |
| ATCATCTTCAACACTCATAT+AGG | - | chr7_2:63600357-63600376 | None:intergenic | 30.0% | |
| CTATGCTTGAATTTCATTAG+TGG | - | chr7_2:63600416-63600435 | None:intergenic | 30.0% | |
| CACTAATGAAATTCAAGCAT+AGG | + | chr7_2:63600414-63600433 | Msa1068580:intron | 30.0% | |
| TAATCTCACAAACATTCTAG+TGG | + | chr7_2:63600542-63600561 | Msa1068580:intron | 30.0% | |
| AATCTCACAAACATTCTAGT+GGG | + | chr7_2:63600543-63600562 | Msa1068580:intron | 30.0% | |
| TAGCAATATGACTAAGTCAA+AGG | - | chr7_2:63600716-63600735 | None:intergenic | 30.0% | |
| GGCAATAGATGAATGTTATA+AGG | - | chr7_2:63600771-63600790 | None:intergenic | 30.0% | |
| AGACCTTGTTAATTTAGATG+TGG | + | chr7_2:63600941-63600960 | Msa1068580:intron | 30.0% | |
| TCACCACATCTAAATTAACA+AGG | - | chr7_2:63600947-63600966 | None:intergenic | 30.0% | |
| CTTATCGATCTAAATGACTA+AGG | - | chr7_2:63601078-63601097 | None:intergenic | 30.0% | |
| TCTTGTAAATGTAACTCAGT+TGG | - | chr7_2:63601278-63601297 | None:intergenic | 30.0% | |
| !! | TCTTCTGAAACTACATTGAT+TGG | + | chr7_2:63601502-63601521 | Msa1068580:intron | 30.0% |
| ! | CAACAATTTTTCTTTCCGTT+TGG | - | chr7_2:63601598-63601617 | None:intergenic | 30.0% |
| GGAAAGAAAAATTGTTGACA+TGG | + | chr7_2:63601601-63601620 | Msa1068580:CDS | 30.0% | |
| AGAAAAATTGTTGACATGGA+AGG | + | chr7_2:63601605-63601624 | Msa1068580:CDS | 30.0% | |
| !!! | TGTTTTTTGCTTGATAACCA+AGG | - | chr7_2:63601713-63601732 | None:intergenic | 30.0% |
| AATCACTAGTACTTCCATTT+GGG | + | chr7_2:63601787-63601806 | Msa1068580:CDS | 30.0% | |
| ! | TTTGTTATATGCGTCATTTC+TGG | - | chr7_2:63601834-63601853 | None:intergenic | 30.0% |
| ! | TTATTTTCGGACATTGATGT+TGG | + | chr7_2:63601866-63601885 | Msa1068580:CDS | 30.0% |
| AAAGTTGCAAACCAAATTAG+AGG | - | chr7_2:63602020-63602039 | None:intergenic | 30.0% | |
| !! | CTAATTTGGTTTGCAACTTT+AGG | + | chr7_2:63602020-63602039 | Msa1068580:CDS | 30.0% |
| !! | AATTTGGTTTGCAACTTTAG+GGG | + | chr7_2:63602022-63602041 | Msa1068580:CDS | 30.0% |
| !! | TAATTTTGATGGTTTGTCAG+AGG | + | chr7_2:63602148-63602167 | Msa1068580:CDS | 30.0% |
| ! | ATATGATGGTGATTTAAACG+TGG | + | chr7_2:63602193-63602212 | Msa1068580:three_prime_UTR | 30.0% |
| TTGTTTAGTGCATAAAGCAA+AGG | - | chr7_2:63602356-63602375 | None:intergenic | 30.0% | |
| TGGGGTTAAACAAGATTCAT+CGG | - | chr7_2:63599051-63599070 | None:intergenic | 35.0% | |
| GTATAAAGAAAACGTGCACA+TGG | - | chr7_2:63599080-63599099 | None:intergenic | 35.0% | |
| AATTGCTCTCACAACATTCA+TGG | + | chr7_2:63599278-63599297 | Msa1068580:CDS | 35.0% | |
| TATAAGGCCACAATAAAGCT+TGG | + | chr7_2:63599315-63599334 | Msa1068580:CDS | 35.0% | |
| TATCTCAAACAGTAGACAGA+AGG | + | chr7_2:63599435-63599454 | Msa1068580:intron | 35.0% | |
| ! | ATCATGCTGTTAGTATTGAG+TGG | + | chr7_2:63599521-63599540 | Msa1068580:CDS | 35.0% |
| !!! | TATAGTTTTGACTCGTGGTT+AGG | + | chr7_2:63599745-63599764 | Msa1068580:intron | 35.0% |
| AGAGTTCATCCATATGATGT+AGG | + | chr7_2:63600228-63600247 | Msa1068580:intron | 35.0% | |
| AATGTATACCACAATGTTGG+AGG | + | chr7_2:63600253-63600272 | Msa1068580:intron | 35.0% | |
| ! | ATGCCACTTCTATGAAAGTT+TGG | + | chr7_2:63600375-63600394 | Msa1068580:intron | 35.0% |
| ! | TGCCACTTCTATGAAAGTTT+GGG | + | chr7_2:63600376-63600395 | Msa1068580:intron | 35.0% |
| TCGTTCAAAGTTGTTCAATG+CGG | - | chr7_2:63600462-63600481 | None:intergenic | 35.0% | |
| ATTGAACAACTTTGAACGAG+AGG | + | chr7_2:63600463-63600482 | Msa1068580:intron | 35.0% | |
| AATGTGAGTGATGAAATCAC+TGG | + | chr7_2:63600488-63600507 | Msa1068580:intron | 35.0% | |
| !! | TGAAATCACTGGTTCATATG+TGG | + | chr7_2:63600499-63600518 | Msa1068580:intron | 35.0% |
| ! | GTATAGCGTTCCCTTTTATA+TGG | - | chr7_2:63600792-63600811 | None:intergenic | 35.0% |
| GATCTATCCGCTAGATTAAT+TGG | - | chr7_2:63601176-63601195 | None:intergenic | 35.0% | |
| CAACAAAAGACGTTATTTGC+AGG | - | chr7_2:63601252-63601271 | None:intergenic | 35.0% | |
| AGTTTCAGAAGAATATGGCA+TGG | - | chr7_2:63601494-63601513 | None:intergenic | 35.0% | |
| !! | AATGGAAGTACTAGTGATTG+TGG | - | chr7_2:63601786-63601805 | None:intergenic | 35.0% |
| CAATCACTAGTACTTCCATT+TGG | + | chr7_2:63601786-63601805 | Msa1068580:CDS | 35.0% | |
| ATCACTAGTACTTCCATTTG+GGG | + | chr7_2:63601788-63601807 | Msa1068580:CDS | 35.0% | |
| ATAAAGAAAATCTGCAGTCC+AGG | - | chr7_2:63601906-63601925 | None:intergenic | 35.0% | |
| !! | TCAAAGATTGGTGTTGATTG+TGG | + | chr7_2:63601981-63602000 | Msa1068580:CDS | 35.0% |
| TGTCAGTATCCCACAAATAA+GGG | - | chr7_2:63602060-63602079 | None:intergenic | 35.0% | |
| ATGTCAGTATCCCACAAATA+AGG | - | chr7_2:63602061-63602080 | None:intergenic | 35.0% | |
| ! | TACTATTAGCTTACTTGAGC+TGG | + | chr7_2:63602081-63602100 | Msa1068580:CDS | 35.0% |
| TAAAGAAAACGTGCACATGG+TGG | - | chr7_2:63599077-63599096 | None:intergenic | 40.0% | |
| GGAAAGTCCTTCTCAGTATA+AGG | + | chr7_2:63599299-63599318 | Msa1068580:CDS | 40.0% | |
| !! | ATTGTGGCCTTATACTGAGA+AGG | - | chr7_2:63599309-63599328 | None:intergenic | 40.0% |
| !! | AGGTAGACCAAGCTTTATTG+TGG | - | chr7_2:63599325-63599344 | None:intergenic | 40.0% |
| ACAATAAAGCTTGGTCTACC+TGG | + | chr7_2:63599324-63599343 | Msa1068580:CDS | 40.0% | |
| CAATAAAGCTTGGTCTACCT+GGG | + | chr7_2:63599325-63599344 | Msa1068580:CDS | 40.0% | |
| AAACTCAACCTCCAACATTG+TGG | - | chr7_2:63600264-63600283 | None:intergenic | 40.0% | |
| TGCCCAAACTTTCATAGAAG+TGG | - | chr7_2:63600381-63600400 | None:intergenic | 40.0% | |
| AAAGTTGTTCAATGCGGTGT+GGG | - | chr7_2:63600456-63600475 | None:intergenic | 40.0% | |
| ! | ACTGGTTCATATGTGGAATG+AGG | + | chr7_2:63600506-63600525 | Msa1068580:intron | 40.0% |
| ATGTGGAATGAGGTTCATAG+AGG | + | chr7_2:63600516-63600535 | Msa1068580:intron | 40.0% | |
| TAAATGACTAAGGCGTGCAA+AGG | - | chr7_2:63601068-63601087 | None:intergenic | 40.0% | |
| AAGACGTTATTTGCAGGAGT+CGG | - | chr7_2:63601246-63601265 | None:intergenic | 40.0% | |
| AGTAAGGCCAAGTGATACTT+CGG | - | chr7_2:63601672-63601691 | None:intergenic | 40.0% | |
| ACTGACACATACTACCAGTA+AGG | - | chr7_2:63601688-63601707 | None:intergenic | 40.0% | |
| GTAGTATGTGTCAGTTTCCT+TGG | + | chr7_2:63601693-63601712 | Msa1068580:CDS | 40.0% | |
| AGCTCGGGAAAGTAAAAAAG+GGG | - | chr7_2:63601948-63601967 | None:intergenic | 40.0% | |
| CAGCTCGGGAAAGTAAAAAA+GGG | - | chr7_2:63601949-63601968 | None:intergenic | 40.0% | |
| TGTTCAAGCTGCCTCTAATT+TGG | + | chr7_2:63602006-63602025 | Msa1068580:CDS | 40.0% | |
| ACAAATAAGGGAAAGCCCAA+CGG | - | chr7_2:63602048-63602067 | None:intergenic | 40.0% | |
| ! | TTGGGCTTTCCCTTATTTGT+GGG | + | chr7_2:63602048-63602067 | Msa1068580:CDS | 40.0% |
| ! | TATTAGCTTACTTGAGCTGG+AGG | + | chr7_2:63602084-63602103 | Msa1068580:CDS | 40.0% |
| AGCTGGAGGTTTCTATCTAA+AGG | + | chr7_2:63602098-63602117 | Msa1068580:CDS | 40.0% | |
| GCTGGAGGTTTCTATCTAAA+GGG | + | chr7_2:63602099-63602118 | Msa1068580:CDS | 40.0% | |
| ! | GGTTTGTCAGAGGTTTTACA+AGG | + | chr7_2:63602158-63602177 | Msa1068580:CDS | 40.0% |
| ! | TGTCAGAGGTTTTACAAGGA+TGG | + | chr7_2:63602162-63602181 | Msa1068580:CDS | 40.0% |
| ! | GTTTTACAAGGATGGAACTG+AGG | + | chr7_2:63602170-63602189 | Msa1068580:CDS | 40.0% |
| ! | TGATGGTGATTTAAACGTGG+AGG | + | chr7_2:63602196-63602215 | Msa1068580:three_prime_UTR | 40.0% |
| ! | AGAAGCACAATGGGAAACAG+TGG | - | chr7_2:63599198-63599217 | None:intergenic | 45.0% |
| GTGAGAGCAATTTCTCGTGA+AGG | - | chr7_2:63599270-63599289 | None:intergenic | 45.0% | |
| TCAGCTAGATTGCTGTCGTT+CGG | - | chr7_2:63599562-63599581 | None:intergenic | 45.0% | |
| ! | TTTGACTCGTGGTTAGGCTT+AGG | + | chr7_2:63599751-63599770 | Msa1068580:intron | 45.0% |
| AAGTTGTTCAATGCGGTGTG+GGG | - | chr7_2:63600455-63600474 | None:intergenic | 45.0% | |
| CAAAGTTGTTCAATGCGGTG+TGG | - | chr7_2:63600457-63600476 | None:intergenic | 45.0% | |
| CACAGATAAGTTACTCGACG+CGG | - | chr7_2:63601019-63601038 | None:intergenic | 45.0% | |
| ! | CATTCCTCCGAAGTATCACT+TGG | + | chr7_2:63601662-63601681 | Msa1068580:CDS | 45.0% |
| !! | GAAGTATCACTTGGCCTTAC+TGG | + | chr7_2:63601671-63601690 | Msa1068580:CDS | 45.0% |
| !! | GGAAGTACTAGTGATTGTGG+TGG | - | chr7_2:63601783-63601802 | None:intergenic | 45.0% |
| GCTTCAAATGCTTCCCCAAA+TGG | - | chr7_2:63601804-63601823 | None:intergenic | 45.0% | |
| TTGGTTGTTCCACTACAACC+TGG | + | chr7_2:63601885-63601904 | Msa1068580:CDS | 45.0% | |
| CCAGCTCGGGAAAGTAAAAA+AGG | - | chr7_2:63601950-63601969 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTACTTTCCCGAGC+TGG | + | chr7_2:63601947-63601966 | Msa1068580:CDS | 45.0% |
| GTTCGCAAGGCTTCAAAGAT+TGG | + | chr7_2:63601969-63601988 | Msa1068580:CDS | 45.0% | |
| ! | GTTGGGCTTTCCCTTATTTG+TGG | + | chr7_2:63602047-63602066 | Msa1068580:CDS | 45.0% |
| GGATGGAACTGAGGATATGA+TGG | + | chr7_2:63602179-63602198 | Msa1068580:exon | 45.0% | |
| AGAAAACGTGCACATGGTGG+CGG | - | chr7_2:63599074-63599093 | None:intergenic | 50.0% | |
| TTGCTGTCGTTCGGGTAAGA+AGG | - | chr7_2:63599553-63599572 | None:intergenic | 50.0% | |
| CAGCTAGATTGCTGTCGTTC+GGG | - | chr7_2:63599561-63599580 | None:intergenic | 50.0% | |
| GTGGTTAGGCTTAGGAGTCA+AGG | + | chr7_2:63599759-63599778 | Msa1068580:intron | 50.0% | |
| GGCTTAGGAGTCAAGGAATG+TGG | + | chr7_2:63599766-63599785 | Msa1068580:intron | 50.0% | |
| AGTTGTTCAATGCGGTGTGG+GGG | - | chr7_2:63600454-63600473 | None:intergenic | 50.0% | |
| GATAAGTTACTCGACGCGGT+TGG | - | chr7_2:63601015-63601034 | None:intergenic | 50.0% | |
| CGCGTCGAGTAACTTATCTG+TGG | + | chr7_2:63601017-63601036 | Msa1068580:intron | 50.0% | |
| AAGGCCAAGTGATACTTCGG+AGG | - | chr7_2:63601669-63601688 | None:intergenic | 50.0% | |
| ATCTGCAGTCCAGGTTGTAG+TGG | - | chr7_2:63601897-63601916 | None:intergenic | 50.0% | |
| ! | TTTGCAACTTTAGGGGCCGT+TGG | + | chr7_2:63602029-63602048 | Msa1068580:CDS | 50.0% |
| ! | TTGCAACTTTAGGGGCCGTT+GGG | + | chr7_2:63602030-63602049 | Msa1068580:CDS | 50.0% |
| ! | CAATGCGGTGTGGGGGATTT+TGG | - | chr7_2:63600447-63600466 | None:intergenic | 55.0% |
| AGGAGTCGGAGTTCGAACTC+TGG | - | chr7_2:63601232-63601251 | None:intergenic | 55.0% | |
| TGAAGCCTTGCGAACCAGCT+CGG | - | chr7_2:63601964-63601983 | None:intergenic | 55.0% | |
| !! | AACGTGCACATGGTGGCGGT+GGG | - | chr7_2:63599070-63599089 | None:intergenic | 60.0% |
| !! | AAACGTGCACATGGTGGCGG+TGG | - | chr7_2:63599071-63599090 | None:intergenic | 60.0% |
| !! | CTTTCCCGAGCTGGTTCGCA+AGG | + | chr7_2:63601956-63601975 | Msa1068580:CDS | 60.0% |
| GAAGCCTTGCGAACCAGCTC+GGG | - | chr7_2:63601963-63601982 | None:intergenic | 60.0% | |
| !! | ACGTGCACATGGTGGCGGTG+GGG | - | chr7_2:63599069-63599088 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 63599008 | 63602386 | 63599008 | ID=Msa1068580;Name=Msa1068580 |
| chr7_2 | mRNA | 63599008 | 63602386 | 63599008 | ID=Msa1068580-mRNA-1;Parent=Msa1068580;Name=Msa1068580-mRNA-1;_AED=0.24;_eAED=0.24;_QI=241|1|1|1|1|1|3|196|300 |
| chr7_2 | exon | 63599008 | 63599346 | 63599008 | ID=Msa1068580-mRNA-1:exon:13187;Parent=Msa1068580-mRNA-1 |
| chr7_2 | exon | 63599447 | 63599606 | 63599447 | ID=Msa1068580-mRNA-1:exon:13188;Parent=Msa1068580-mRNA-1 |
| chr7_2 | exon | 63601546 | 63602386 | 63601546 | ID=Msa1068580-mRNA-1:exon:13189;Parent=Msa1068580-mRNA-1 |
| chr7_2 | five_prime_UTR | 63599008 | 63599248 | 63599008 | ID=Msa1068580-mRNA-1:five_prime_utr;Parent=Msa1068580-mRNA-1 |
| chr7_2 | CDS | 63599249 | 63599346 | 63599249 | ID=Msa1068580-mRNA-1:cds;Parent=Msa1068580-mRNA-1 |
| chr7_2 | CDS | 63599447 | 63599606 | 63599447 | ID=Msa1068580-mRNA-1:cds;Parent=Msa1068580-mRNA-1 |
| chr7_2 | CDS | 63601546 | 63602190 | 63601546 | ID=Msa1068580-mRNA-1:cds;Parent=Msa1068580-mRNA-1 |
| chr7_2 | three_prime_UTR | 63602191 | 63602386 | 63602191 | ID=Msa1068580-mRNA-1:three_prime_utr;Parent=Msa1068580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
