AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678130 MtrunA17_Chr4g0022931 77.926 299 39 1 1 299 1 272 8.65e-162 451
Msa0678130 MtrunA17_Chr4g0022911 72.607 303 67 5 1 299 1 291 6.13e-144 406
Msa0678130 MtrunA17_Chr4g0022901 70.333 300 60 5 1 299 1 272 1.56e-142 402
Msa0678130 MtrunA17_Chr2g0323351 67.391 138 44 1 1 138 1 137 1.11e-66 209
Msa0678130 MtrunA17_Chr7g0274581 57.857 140 58 1 1 140 1 139 4.02e-57 182
Msa0678130 MtrunA17_Chr1g0167691 49.020 204 88 6 1 203 1 189 2.48e-56 182
Msa0678130 MtrunA17_Chr1g0187761 45.894 207 101 4 1 207 1 196 1.15e-55 181
Msa0678130 MtrunA17_Chr7g0261281 58.333 144 55 2 1 144 1 139 5.80e-55 179
Msa0678130 MtrunA17_Chr1g0167661 65.812 117 39 1 1 117 1 116 4.07e-54 176
Msa0678130 MtrunA17_Chr2g0281071 64.103 117 42 0 1 117 1 117 6.82e-54 179
Msa0678130 MtrunA17_Chr4g0048511 63.248 117 43 0 1 117 1 117 1.74e-53 178
Msa0678130 MtrunA17_Chr4g0022881 65.217 115 39 1 1 115 1 114 1.93e-53 174
Msa0678130 MtrunA17_Chr2g0323411 60.606 132 51 1 1 132 1 131 2.01e-52 174
Msa0678130 MtrunA17_Chr3g0115821 61.538 117 44 1 1 117 1 116 3.42e-52 174
Msa0678130 MtrunA17_Chr1g0203411 63.248 117 42 1 1 117 1 116 4.11e-52 172
Msa0678130 MtrunA17_Chr4g0042671 65.812 117 39 1 1 117 1 116 6.71e-52 175
Msa0678130 MtrunA17_Chr4g0039971 52.703 148 54 3 1 133 2 148 2.12e-51 172
Msa0678130 MtrunA17_Chr8g0349261 62.712 118 43 1 1 117 1 118 5.50e-51 170
Msa0678130 MtrunA17_Chr1g0211161 59.829 117 47 0 1 117 1 117 1.11e-50 167
Msa0678130 MtrunA17_Chr4g0022891 43.192 213 108 5 1 203 1 210 1.27e-50 167
Msa0678130 MtrunA17_Chr6g0453471 63.248 117 42 1 1 117 1 116 3.36e-50 169
Msa0678130 MtrunA17_Chr7g0217741 63.248 117 42 1 1 117 1 116 4.06e-50 168
Msa0678130 MtrunA17_Chr4g0070611 63.248 117 42 1 1 117 1 116 5.37e-50 167
Msa0678130 MtrunA17_Chr1g0193801 40.670 209 122 1 6 214 5 211 5.50e-50 170
Msa0678130 MtrunA17_Chr1g0193371 54.286 140 56 1 6 137 5 144 8.11e-50 169
Msa0678130 MtrunA17_Chr8g0346561 61.789 123 46 1 1 123 1 122 8.30e-50 167
Msa0678130 MtrunA17_Chr2g0323321 77.419 93 19 2 1 93 1 91 1.22e-49 160
Msa0678130 MtrunA17_Chr7g0275911 61.157 121 46 1 1 121 1 120 1.36e-49 165
Msa0678130 MtrunA17_Chr4g0070641 47.429 175 83 3 1 175 1 166 1.43e-49 162
Msa0678130 MtrunA17_Chr3g0117091 47.337 169 87 2 7 173 6 174 2.45e-49 167
Msa0678130 MtrunA17_Chr3g0131121 61.538 117 44 1 1 117 1 116 6.59e-49 164
Msa0678130 MtrunA17_Chr5g0410961 61.538 117 44 1 1 117 1 116 7.25e-49 166
Msa0678130 MtrunA17_Chr4g0037141 44.944 178 91 3 1 173 1 176 1.07e-48 163
Msa0678130 MtrunA17_Chr4g0057031 60.684 117 45 1 1 117 1 116 1.12e-48 163
Msa0678130 MtrunA17_Chr4g0058631 61.607 112 43 0 6 117 5 116 2.38e-48 165
Msa0678130 MtrunA17_Chr7g0228891 58.120 117 48 1 1 117 1 116 2.72e-48 162
Msa0678130 MtrunA17_Chr5g0395281 58.974 117 47 1 1 117 1 116 2.91e-48 163
Msa0678130 MtrunA17_Chr7g0270891 51.351 148 61 1 6 142 5 152 2.95e-48 164
Msa0678130 MtrunA17_Chr4g0068061 60.684 117 45 1 1 117 1 116 3.87e-48 164
Msa0678130 MtrunA17_Chr5g0434571 59.829 117 46 1 1 117 37 152 8.61e-48 163
Msa0678130 MtrunA17_Chr7g0217221 56.693 127 54 1 1 127 1 126 1.09e-47 160
Msa0678130 MtrunA17_Chr8g0385321 58.974 117 47 1 1 117 1 116 1.37e-47 161
Msa0678130 MtrunA17_Chr3g0110351 53.571 140 54 3 1 130 1 139 1.64e-47 161
Msa0678130 MtrunA17_Chr4g0044421 60.870 115 45 0 3 117 2 116 1.86e-47 157
Msa0678130 MtrunA17_Chr2g0311221 63.636 110 39 1 2 111 4 112 2.71e-47 161
Msa0678130 MtrunA17_Chr8g0342541 58.929 112 46 0 6 117 5 116 1.16e-46 160
Msa0678130 MtrunA17_Chr2g0330041 59.821 112 45 0 6 117 5 116 1.99e-46 160
Msa0678130 MtrunA17_Chr3g0103281 58.120 117 48 1 1 117 1 116 2.75e-46 158
Msa0678130 MtrunA17_Chr1g0151941 55.932 118 50 2 1 117 1 117 5.21e-46 155
Msa0678130 MtrunA17_Chr6g0452271 58.120 117 48 1 1 117 1 116 5.61e-46 158
Msa0678130 MtrunA17_Chr2g0309911 58.559 111 46 0 7 117 5 115 5.74e-46 157
Msa0678130 MtrunA17_Chr8g0342521 58.036 112 47 0 6 117 5 116 6.08e-46 158
Msa0678130 MtrunA17_Chr3g0121241 60.360 111 44 0 7 117 36 146 8.96e-46 156
Msa0678130 MtrunA17_Chr5g0435101 58.261 115 47 1 3 117 2 115 9.60e-46 154
Msa0678130 MtrunA17_Chr8g0342481 59.649 114 43 2 6 117 5 117 9.46e-45 156
Msa0678130 MtrunA17_Chr4g0055981 52.206 136 61 1 1 132 43 178 1.34e-44 151
Msa0678130 MtrunA17_Chr4g0060721 54.545 121 54 1 1 121 2 121 2.92e-44 153
Msa0678130 MtrunA17_Chr7g0254411 56.780 118 50 1 1 118 1 117 3.96e-44 153
Msa0678130 MtrunA17_Chr7g0271241 61.905 105 40 0 6 110 5 109 5.69e-44 154
Msa0678130 MtrunA17_Chr3g0088461 62.037 108 41 0 10 117 19 126 6.30e-44 152
Msa0678130 MtrunA17_Chr2g0328771 61.905 105 40 0 13 117 20 124 7.38e-44 152
Msa0678130 MtrunA17_Chr6g0453211 59.459 111 44 1 1 111 1 110 9.69e-44 151
Msa0678130 MtrunA17_Chr4g0028311 56.780 118 49 2 1 117 1 117 1.28e-43 151
Msa0678130 MtrunA17_Chr1g0194951 57.265 117 49 1 1 117 1 116 1.40e-43 152
Msa0678130 MtrunA17_Chr6g0470971 55.118 127 47 1 9 135 10 126 1.57e-43 150
Msa0678130 MtrunA17_Chr8g0387421 56.250 112 49 0 6 117 5 116 1.82e-43 151
Msa0678130 MtrunA17_Chr1g0203441 58.120 117 49 0 1 117 1 117 2.03e-43 149
Msa0678130 MtrunA17_Chr3g0092401 52.713 129 53 2 1 122 2 129 2.06e-43 150
Msa0678130 MtrunA17_Chr1g0152011 55.085 118 51 2 1 117 1 117 5.00e-43 150
Msa0678130 MtrunA17_Chr5g0417821 60.377 106 42 0 12 117 6 111 5.58e-43 149
Msa0678130 MtrunA17_Chr7g0264641 55.932 118 50 2 1 117 1 117 5.71e-43 148
Msa0678130 MtrunA17_Chr5g0400821 55.932 118 50 2 1 117 1 117 6.18e-43 149
Msa0678130 MtrunA17_Chr1g0209661 55.200 125 53 1 13 137 27 148 8.04e-43 149
Msa0678130 MtrunA17_Chr3g0135311 55.932 118 50 2 1 117 1 117 9.40e-43 150
Msa0678130 MtrunA17_Chr4g0032401 60.000 105 42 0 13 117 17 121 1.90e-42 149
Msa0678130 MtrunA17_Chr5g0397231 57.547 106 45 0 6 111 5 110 3.17e-42 148
Msa0678130 MtrunA17_Chr7g0220341 51.389 144 59 3 8 149 20 154 6.09e-42 145
Msa0678130 MtrunA17_Chr5g0434931 60.377 106 42 0 12 117 34 139 6.97e-42 145
Msa0678130 MtrunA17_Chr1g0180391 61.905 105 40 0 13 117 19 123 9.90e-42 144
Msa0678130 MtrunA17_Chr7g0228231 55.085 118 53 0 13 130 14 131 1.29e-41 143
Msa0678130 MtrunA17_Chr2g0327351 57.143 112 46 2 1 111 1 111 2.62e-41 145
Msa0678130 MtrunA17_Chr7g0240821 54.237 118 54 0 17 134 5 122 3.56e-41 142
Msa0678130 MtrunA17_Chr7g0269831 59.829 117 46 1 1 117 1 116 4.12e-41 145
Msa0678130 MtrunA17_Chr5g0434911 58.716 109 45 0 9 117 17 125 5.02e-41 143
Msa0678130 MtrunA17_Chr3g0080861 51.200 125 61 0 13 137 37 161 8.16e-41 148
Msa0678130 MtrunA17_Chr5g0434831 59.091 110 45 0 8 117 2 111 1.06e-40 140
Msa0678130 MtrunA17_Chr7g0228991 59.091 110 45 0 8 117 24 133 1.10e-40 142
Msa0678130 MtrunA17_Chr6g0450101 55.085 118 50 1 13 127 14 131 1.62e-40 140
Msa0678130 MtrunA17_Chr4g0054391 55.856 111 47 2 1 110 1 110 1.79e-40 142
Msa0678130 MtrunA17_Chr5g0434841 56.522 115 50 0 3 117 10 124 1.87e-40 143
Msa0678130 MtrunA17_Chr1g0186061 60.194 103 41 0 14 116 21 123 3.21e-40 140
Msa0678130 MtrunA17_Chr1g0194291 48.227 141 64 1 8 148 16 147 4.92e-40 140
Msa0678130 MtrunA17_Chr1g0168661 55.932 118 51 1 14 131 22 138 6.30e-40 140
Msa0678130 MtrunA17_Chr3g0099131 56.604 106 46 0 11 116 39 144 8.41e-40 145
Msa0678130 MtrunA17_Chr8g0360111 61.165 103 40 0 11 113 23 125 8.72e-40 140
Msa0678130 MtrunA17_Chr8g0354661 58.654 104 43 0 13 116 37 140 1.07e-39 145
Msa0678130 MtrunA17_Chr4g0072751 56.250 112 47 2 1 111 1 111 2.12e-39 141
Msa0678130 MtrunA17_Chr8g0343831 52.991 117 50 1 1 117 1 112 3.35e-39 138
Msa0678130 MtrunA17_Chr1g0154031 48.062 129 67 0 13 141 76 204 7.43e-39 141
Msa0678130 MtrunA17_Chr6g0487491 53.600 125 48 3 1 116 1 124 1.22e-38 137
Msa0678130 MtrunA17_Chr1g0194301 56.190 105 46 0 13 117 33 137 1.79e-38 137
Msa0678130 MtrunA17_Chr2g0327821 42.667 150 83 1 13 159 6 155 4.63e-38 134
Msa0678130 MtrunA17_Chr2g0322521 54.545 110 50 0 7 116 23 132 7.18e-38 138
Msa0678130 MtrunA17_Chr4g0030881 54.545 110 43 1 14 116 8 117 1.28e-35 129
Msa0678130 MtrunA17_Chr2g0293911 53.636 110 51 0 8 117 19 128 3.18e-34 127
Msa0678130 MtrunA17_Chr4g0042611 58.427 89 36 1 1 89 1 88 3.37e-34 119
Msa0678130 MtrunA17_Chr5g0440781 50.485 103 50 1 14 115 13 115 1.56e-33 121
Msa0678130 MtrunA17_Chr7g0247131 67.568 74 24 0 44 117 9 82 1.60e-33 123
Msa0678130 MtrunA17_Chr5g0440761 50.485 103 50 1 14 115 13 115 1.61e-33 123
Msa0678130 MtrunA17_Chr5g0441141 50.485 103 50 1 14 115 13 115 1.75e-33 124
Msa0678130 MtrunA17_Chr4g0068921 55.340 103 46 0 13 115 24 126 2.10e-33 121
Msa0678130 MtrunA17_Chr1g0192411 49.524 105 53 0 13 117 12 116 8.04e-33 125
Msa0678130 MtrunA17_Chr5g0441131 47.414 116 56 2 1 115 1 112 3.21e-32 117
Msa0678130 MtrunA17_Chr5g0395221 57.303 89 37 1 1 89 1 88 5.31e-32 114
Msa0678130 MtrunA17_Chr8g0342531 57.955 88 37 0 3 90 2 89 1.15e-31 115
Msa0678130 MtrunA17_Chr8g0342511 57.831 83 35 0 6 88 5 87 1.95e-31 113
Msa0678130 MtrunA17_Chr2g0294811 58.427 89 36 1 1 89 1 88 2.05e-31 113
Msa0678130 MtrunA17_Chr8g0334881 49.057 106 52 2 13 117 10 114 2.33e-29 114
Msa0678130 MtrunA17_Chr5g0434901 70.588 68 20 0 47 114 7 74 5.43e-29 107
Msa0678130 MtrunA17_Chr8g0342461 54.545 88 35 2 6 90 5 90 6.78e-29 107
Msa0678130 MtrunA17_Chr4g0013361 34.759 187 116 5 13 194 10 195 7.73e-29 112
Msa0678130 MtrunA17_Chr7g0229131 43.836 146 68 4 44 185 3 138 1.41e-28 107
Msa0678130 MtrunA17_Chr3g0133601 49.515 103 51 1 15 117 37 138 1.72e-28 109
Msa0678130 MtrunA17_Chr3g0099141 51.163 86 42 0 10 95 37 122 2.14e-28 106
Msa0678130 MtrunA17_Chr5g0429661 47.573 103 51 2 15 116 122 222 2.30e-28 112
Msa0678130 MtrunA17_Chr8g0342471 53.409 88 36 2 6 90 5 90 3.14e-28 106
Msa0678130 MtrunA17_Chr6g0454921 49.020 102 51 1 15 116 15 115 2.22e-27 105
Msa0678130 MtrunA17_Chr4g0008551 39.610 154 84 4 15 167 38 183 4.86e-27 108
Msa0678130 MtrunA17_Chr4g0053431 46.078 102 54 1 15 116 5 105 9.81e-27 105
Msa0678130 MtrunA17_Chr7g0229101 63.380 71 26 0 44 114 3 73 1.89e-26 103
Msa0678130 MtrunA17_Chr5g0401731 35.294 170 95 3 15 184 15 169 5.74e-26 104
Msa0678130 MtrunA17_Chr4g0058991 41.739 115 64 2 3 116 197 309 5.80e-26 106
Msa0678130 MtrunA17_Chr7g0238631 46.729 107 54 2 13 118 111 215 6.52e-26 107
Msa0678130 MtrunA17_Chr6g0453751 50.000 94 38 2 12 96 19 112 6.95e-26 99.8
Msa0678130 MtrunA17_Chr5g0425591 49.485 97 44 2 1 96 1 93 2.96e-25 96.7
Msa0678130 MtrunA17_Chr6g0480581 47.525 101 52 1 15 115 4 103 6.28e-25 100
Msa0678130 MtrunA17_Chr5g0417621 40.769 130 74 2 15 143 134 261 1.17e-24 102
Msa0678130 MtrunA17_Chr7g0228531 45.098 102 54 2 15 116 220 319 2.08e-24 102
Msa0678130 MtrunA17_Chr3g0117511 38.462 117 68 3 2 116 169 283 2.65e-24 102
Msa0678130 MtrunA17_Chr1g0157731 42.453 106 60 1 13 118 89 193 7.56e-24 101
Msa0678130 MtrunA17_Chr1g0157731 31.579 114 76 2 15 127 39 151 3.26e-13 70.1
Msa0678130 MtrunA17_Chr3g0139671 42.308 104 59 1 15 118 85 187 7.79e-24 101
Msa0678130 MtrunA17_Chr3g0139671 33.333 114 74 2 15 127 33 145 3.82e-13 69.7
Msa0678130 MtrunA17_Chr4g0042501 46.602 103 52 2 15 116 105 205 1.26e-23 99.8
Msa0678130 MtrunA17_Chr7g0254261 39.597 149 87 3 15 162 89 235 2.23e-22 95.5
Msa0678130 MtrunA17_Chr3g0125801 47.573 103 51 2 15 116 16 116 4.42e-22 93.6
Msa0678130 MtrunA17_Chr6g0460661 39.806 103 59 2 15 116 16 116 5.15e-22 90.5
Msa0678130 MtrunA17_Chr7g0228401 34.351 131 70 2 26 141 290 419 1.47e-21 94.4
Msa0678130 MtrunA17_Chr5g0437321 41.748 103 51 2 15 113 19 116 1.79e-21 92.0
Msa0678130 MtrunA17_Chr3g0093811 51.899 79 38 0 44 122 13 91 5.04e-21 90.1
Msa0678130 MtrunA17_Chr7g0228481 43.878 98 53 2 15 112 220 315 6.22e-21 92.0
Msa0678130 MtrunA17_Chr6g0460671 42.157 102 58 1 15 116 99 199 9.21e-21 90.9
Msa0678130 MtrunA17_Chr5g0397841 43.878 98 54 1 13 110 108 204 5.64e-20 89.7
Msa0678130 MtrunA17_Chr7g0233061 37.190 121 66 4 9 124 174 289 2.75e-19 87.0
Msa0678130 MtrunA17_Chr7g0238651 41.667 96 54 1 18 111 10 105 4.93e-19 86.3
Msa0678130 MtrunA17_Chr1g0177901 36.000 125 61 4 26 134 4 125 1.85e-18 82.0
Msa0678130 MtrunA17_Chr8g0362231 36.429 140 74 3 17 155 24 149 1.61e-16 79.3
Msa0678130 MtrunA17_Chr5g0434871 67.442 43 14 0 75 117 2 44 1.53e-15 70.1
Msa0678130 MtrunA17_Chr1g0193901 44.681 94 50 2 6 97 4 97 1.55e-15 71.2
Msa0678130 MtrunA17_Chr1g0193891 44.681 94 50 2 6 97 4 97 1.55e-15 71.2
Msa0678130 MtrunA17_Chr1g0193871 44.681 94 50 2 6 97 4 97 1.55e-15 71.2
Msa0678130 MtrunA17_Chr1g0193881 44.681 94 50 2 6 97 4 97 1.55e-15 71.2
Msa0678130 MtrunA17_Chr5g0416341 37.963 108 64 2 17 123 28 133 4.21e-15 75.5
Msa0678130 MtrunA17_Chr2g0323331 30.144 209 113 8 89 267 5 210 5.60e-14 71.6
Msa0678130 MtrunA17_Chr5g0434891 39.130 92 44 2 78 161 1 88 2.83e-12 63.5
Msa0678130 MtrunA17_Chr2g0322831 58.974 39 16 0 71 109 34 72 2.70e-11 58.9
Msa0678130 MtrunA17_Chr3g0104501 47.059 68 33 2 1 67 119 184 3.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678130 AT1G06180.1 46.544 217 100 6 1 217 1 201 1.96e-56 182
Msa0678130 AT2G31180.1 46.635 208 93 4 1 207 1 191 2.67e-55 180
Msa0678130 AT3G23250.1 45.833 192 101 2 1 192 1 189 2.36e-54 178
Msa0678130 AT4G05100.1 64.103 117 42 0 1 117 1 117 1.81e-53 177
Msa0678130 AT2G16720.1 54.305 151 60 3 1 143 1 150 2.38e-52 173
Msa0678130 AT5G16770.4 63.248 117 42 1 1 117 1 116 2.64e-52 174
Msa0678130 AT5G16770.3 63.248 117 42 1 1 117 1 116 2.64e-52 174
Msa0678130 AT4G28110.1 64.103 117 41 1 1 117 1 116 2.76e-52 173
Msa0678130 AT3G02940.2 63.248 117 42 1 1 117 1 116 3.24e-52 174
Msa0678130 AT5G16770.1 63.248 117 42 1 1 117 1 116 6.24e-52 174
Msa0678130 AT5G16770.2 63.248 117 42 1 1 117 1 116 6.24e-52 174
Msa0678130 AT4G21440.1 62.393 117 43 1 1 117 1 116 8.25e-52 174
Msa0678130 AT3G02940.1 63.248 117 42 1 1 117 1 116 8.50e-52 173
Msa0678130 AT3G02940.3 63.248 117 42 1 1 117 1 116 8.50e-52 173
Msa0678130 AT4G17785.2 54.676 139 62 1 1 138 1 139 9.75e-52 174
Msa0678130 AT4G17785.1 54.676 139 62 1 1 138 1 139 1.06e-51 174
Msa0678130 AT3G01140.2 64.957 117 40 1 1 117 1 116 1.37e-51 173
Msa0678130 AT1G22640.1 44.845 194 88 4 1 187 1 182 1.58e-51 170
Msa0678130 AT3G61250.1 64.103 117 41 1 1 117 1 116 1.85e-51 171
Msa0678130 AT3G13540.1 40.455 220 100 3 3 202 13 221 5.26e-51 169
Msa0678130 AT5G15310.1 64.103 117 41 1 1 117 1 116 7.94e-51 171
Msa0678130 AT5G15310.4 64.103 117 41 1 1 117 1 116 8.17e-51 168
Msa0678130 AT5G15310.2 64.103 117 41 1 1 117 1 116 9.88e-51 170
Msa0678130 AT1G16490.1 56.154 130 56 1 2 131 4 132 2.51e-50 167
Msa0678130 AT1G79180.1 61.207 116 44 1 2 117 4 118 4.10e-50 168
Msa0678130 AT1G18570.1 61.538 117 45 0 1 117 1 117 1.26e-49 168
Msa0678130 AT3G01140.1 64.103 117 41 1 1 117 44 159 1.46e-49 169
Msa0678130 AT4G38620.1 51.974 152 68 3 1 151 1 148 1.68e-49 166
Msa0678130 AT5G10280.1 60.684 117 45 1 1 117 1 116 2.49e-49 167
Msa0678130 AT5G60890.1 58.400 125 51 1 1 125 1 124 2.52e-49 166
Msa0678130 AT1G34670.1 51.049 143 69 1 1 143 1 142 4.96e-49 167
Msa0678130 AT5G65230.1 60.684 117 45 1 1 117 1 116 5.91e-49 165
Msa0678130 AT4G01680.3 54.545 143 54 2 6 137 5 147 1.85e-48 162
Msa0678130 AT4G12350.1 43.350 203 105 3 1 200 1 196 3.88e-48 162
Msa0678130 AT1G35515.1 58.974 117 47 1 1 117 1 116 4.27e-48 160
Msa0678130 AT4G01680.1 54.545 143 54 2 6 137 5 147 6.07e-48 163
Msa0678130 AT5G56110.1 59.829 117 46 1 1 117 1 116 1.25e-47 162
Msa0678130 AT1G66230.1 47.059 153 72 2 1 145 1 152 1.72e-47 160
Msa0678130 AT4G09460.1 58.120 117 48 1 1 117 1 116 1.72e-47 159
Msa0678130 AT1G74430.1 62.162 111 42 0 12 122 11 121 1.90e-47 160
Msa0678130 AT1G56160.1 58.621 116 47 1 2 117 4 118 2.07e-47 161
Msa0678130 AT1G74080.1 61.739 115 43 1 1 115 1 114 2.50e-47 162
Msa0678130 AT5G26660.1 61.607 112 43 0 6 117 5 116 3.13e-47 162
Msa0678130 AT4G22680.1 58.974 117 47 1 1 117 1 116 4.34e-47 159
Msa0678130 AT1G09540.1 47.799 159 75 1 6 156 5 163 4.37e-47 162
Msa0678130 AT5G14750.1 53.103 145 57 3 14 158 17 150 9.29e-47 156
Msa0678130 AT4G34990.1 59.829 117 46 1 1 117 1 116 9.93e-47 158
Msa0678130 AT5G16600.1 58.120 117 48 1 1 117 1 116 1.36e-46 159
Msa0678130 AT5G54230.1 63.810 105 38 0 13 117 12 116 2.14e-46 159
Msa0678130 AT5G07690.1 58.120 117 48 1 1 117 1 116 2.51e-46 159
Msa0678130 AT5G61420.2 58.120 117 48 1 1 117 1 116 2.82e-46 160
Msa0678130 AT1G08810.1 44.565 184 94 3 1 184 1 176 4.03e-46 157
Msa0678130 AT1G57560.2 50.360 139 61 1 6 136 5 143 4.32e-46 157
Msa0678130 AT5G14340.1 56.303 119 51 1 1 119 13 130 4.36e-46 157
Msa0678130 AT3G62610.1 59.829 117 46 1 1 117 1 116 4.49e-46 159
Msa0678130 AT5G62320.1 41.753 194 98 5 2 183 3 193 5.68e-46 155
Msa0678130 AT3G47600.1 58.120 117 48 1 1 117 1 116 7.05e-46 158
Msa0678130 AT1G57560.1 58.929 112 46 0 6 117 5 116 7.78e-46 157
Msa0678130 AT5G07700.1 58.120 117 48 1 1 117 1 116 8.20e-46 158
Msa0678130 AT5G07700.2 58.120 117 48 1 1 117 1 116 8.20e-46 158
Msa0678130 AT3G28470.1 62.162 111 41 1 1 111 1 110 1.26e-45 157
Msa0678130 AT2G47460.1 50.980 153 69 4 1 153 1 147 1.54e-45 158
Msa0678130 AT3G13890.2 58.929 112 46 0 6 117 5 116 1.69e-45 157
Msa0678130 AT1G18710.1 59.459 111 45 0 12 122 11 121 2.47e-45 154
Msa0678130 AT3G12820.1 58.261 115 47 1 3 117 5 118 2.55e-45 154
Msa0678130 AT5G49330.1 58.974 117 47 1 1 117 1 116 3.62e-45 156
Msa0678130 AT5G40330.1 63.462 104 38 0 14 117 13 116 1.07e-44 151
Msa0678130 AT3G28910.1 57.627 118 49 1 1 118 1 117 1.19e-44 154
Msa0678130 AT4G01680.2 50.000 156 55 3 6 138 5 160 1.65e-44 155
Msa0678130 AT1G74650.1 57.265 117 49 1 1 117 1 116 3.37e-44 153
Msa0678130 AT3G27810.1 41.451 193 108 3 13 201 20 211 3.45e-44 150
Msa0678130 AT5G62470.2 57.265 117 49 1 1 117 1 116 4.44e-44 154
Msa0678130 AT3G12720.1 54.054 111 51 0 7 117 16 126 5.47e-44 152
Msa0678130 AT5G57620.1 56.780 118 49 2 1 117 1 117 6.55e-44 153
Msa0678130 AT1G79180.2 47.651 149 44 2 2 117 4 151 6.88e-44 152
Msa0678130 AT3G27920.1 61.538 104 40 0 14 117 15 118 9.27e-44 149
Msa0678130 AT3G49690.1 52.713 129 59 2 1 128 1 128 1.83e-43 151
Msa0678130 AT5G23000.1 55.932 118 50 2 1 117 1 117 3.61e-43 150
Msa0678130 AT5G12870.1 57.265 117 50 0 1 117 6 122 5.40e-43 149
Msa0678130 AT3G08500.1 59.091 110 45 0 8 117 25 134 1.14e-42 150
Msa0678130 AT1G63910.1 55.357 112 50 0 6 117 5 116 1.14e-42 150
Msa0678130 AT5G62470.1 57.265 117 48 2 1 117 1 115 1.56e-42 149
Msa0678130 AT5G65790.1 51.515 132 62 2 1 131 1 131 2.01e-42 150
Msa0678130 AT3G13890.1 54.545 121 46 1 6 117 5 125 2.35e-42 149
Msa0678130 AT5G35550.1 56.522 115 50 0 3 117 4 118 7.61e-42 145
Msa0678130 AT3G11440.2 57.407 108 46 0 9 116 37 144 9.29e-42 150
Msa0678130 AT2G36890.1 55.085 118 51 2 1 117 1 117 9.77e-42 146
Msa0678130 AT4G37780.1 53.390 118 53 2 1 117 1 117 1.40e-41 146
Msa0678130 AT2G36890.2 55.085 118 51 2 1 117 42 158 1.47e-41 147
Msa0678130 AT5G40350.1 41.243 177 97 1 13 189 17 186 2.73e-41 142
Msa0678130 AT3G11440.3 57.407 108 46 0 9 116 37 144 3.71e-41 150
Msa0678130 AT3G11440.4 57.407 108 46 0 9 116 37 144 3.71e-41 150
Msa0678130 AT3G11440.1 57.407 108 46 0 9 116 37 144 3.71e-41 150
Msa0678130 AT4G26930.1 40.741 189 87 2 13 176 19 207 6.21e-41 146
Msa0678130 AT4G13480.1 58.475 118 48 1 14 131 7 123 9.95e-41 142
Msa0678130 AT5G52600.1 60.550 109 43 0 8 116 7 115 1.05e-40 140
Msa0678130 AT3G24310.1 55.285 123 54 1 12 134 17 138 1.08e-40 142
Msa0678130 AT5G06100.1 57.143 105 45 0 12 116 31 135 2.87e-40 146
Msa0678130 AT2G32460.2 57.143 105 45 0 12 116 5 109 3.01e-40 146
Msa0678130 AT2G32460.1 57.143 105 45 0 12 116 17 121 3.14e-40 146
Msa0678130 AT5G55020.1 60.194 103 41 0 13 115 26 128 6.92e-40 146
Msa0678130 AT5G06100.5 57.143 105 45 0 12 116 31 135 7.68e-40 146
Msa0678130 AT5G06100.2 57.143 105 45 0 12 116 31 135 7.68e-40 146
Msa0678130 AT5G06100.3 57.143 105 45 0 12 116 31 135 7.68e-40 146
Msa0678130 AT5G06100.4 57.143 105 45 0 12 116 31 135 7.68e-40 146
Msa0678130 AT3G48920.1 57.407 108 46 0 10 117 15 122 1.32e-39 139
Msa0678130 AT3G01530.1 51.754 114 55 0 4 117 16 129 1.66e-39 137
Msa0678130 AT1G66370.1 46.061 165 75 5 12 176 7 157 1.80e-39 139
Msa0678130 AT3G30210.1 50.000 142 66 2 12 153 26 162 2.48e-39 139
Msa0678130 AT2G47190.1 50.000 118 59 0 2 119 9 126 6.94e-39 138
Msa0678130 AT1G25340.1 39.698 199 104 3 14 199 19 214 1.56e-38 137
Msa0678130 AT1G48000.1 42.073 164 78 3 13 176 32 178 1.85e-38 136
Msa0678130 AT1G68320.1 51.200 125 58 1 13 137 19 140 3.47e-38 136
Msa0678130 AT2G26960.1 55.660 106 47 0 10 115 17 122 6.68e-38 139
Msa0678130 AT5G52260.1 58.879 107 44 0 10 116 9 115 7.17e-38 135
Msa0678130 AT4G25560.1 54.310 116 50 1 1 116 1 113 2.59e-37 134
Msa0678130 AT3G46130.1 54.128 109 50 0 9 117 5 113 4.42e-37 133
Msa0678130 AT5G59780.3 55.769 104 46 0 14 117 9 112 1.88e-36 130
Msa0678130 AT1G66380.1 60.952 105 41 0 12 116 7 111 3.32e-35 124
Msa0678130 AT3G53200.1 50.909 110 54 0 9 118 5 114 3.56e-35 127
Msa0678130 AT5G14750.3 52.239 134 44 5 25 158 3 116 3.81e-35 125
Msa0678130 AT1G66390.1 60.000 105 42 0 12 116 7 111 2.83e-34 125
Msa0678130 AT1G56650.1 50.365 137 57 2 12 148 7 132 3.30e-34 125
Msa0678130 AT3G27810.2 39.506 162 93 3 44 201 2 162 4.47e-34 122
Msa0678130 AT3G06490.1 55.140 107 48 0 13 119 19 125 5.26e-34 126
Msa0678130 AT1G25340.2 38.191 199 102 4 14 199 19 209 7.87e-34 125
Msa0678130 AT1G25340.3 38.191 199 102 4 14 199 19 209 1.40e-33 125
Msa0678130 AT5G49620.1 51.304 115 56 0 1 115 14 128 2.38e-33 124
Msa0678130 AT5G35550.2 67.532 77 25 0 41 117 45 121 1.34e-32 121
Msa0678130 AT5G26660.2 68.056 72 23 0 46 117 14 85 9.92e-32 120
Msa0678130 AT3G60460.1 48.696 115 56 2 9 120 7 121 9.08e-31 117
Msa0678130 AT5G40350.2 39.583 144 80 1 46 189 5 141 1.32e-30 113
Msa0678130 AT2G26950.1 49.020 102 52 0 10 111 13 114 1.53e-30 118
Msa0678130 AT3G47600.2 55.914 93 37 1 25 117 22 110 4.77e-30 116
Msa0678130 AT5G49620.2 45.736 129 56 1 1 115 14 142 9.46e-30 115
Msa0678130 AT3G12820.2 66.667 69 23 0 49 117 2 70 1.35e-29 111
Msa0678130 AT3G46130.3 63.014 73 27 0 45 117 9 81 9.56e-29 110
Msa0678130 AT5G59780.2 63.889 72 26 0 46 117 20 91 1.98e-28 109
Msa0678130 AT3G46130.4 63.889 72 26 0 46 117 20 91 2.29e-28 109
Msa0678130 AT4G18770.1 44.444 108 59 1 9 116 211 317 3.06e-28 113
Msa0678130 AT3G27785.1 42.424 132 68 3 1 132 175 298 4.46e-28 112
Msa0678130 AT3G53200.2 61.644 73 28 0 46 118 9 81 1.71e-27 106
Msa0678130 AT5G11510.3 44.340 106 58 1 13 118 79 183 8.29e-27 110
Msa0678130 AT5G11510.3 33.333 114 74 2 15 127 29 141 5.49e-14 72.8
Msa0678130 AT5G11510.1 44.340 106 58 1 13 118 79 183 8.29e-27 110
Msa0678130 AT5G11510.1 33.333 114 74 2 15 127 29 141 5.49e-14 72.8
Msa0678130 AT5G11510.4 44.340 106 58 1 13 118 79 183 8.29e-27 110
Msa0678130 AT5G11510.4 33.333 114 74 2 15 127 29 141 5.49e-14 72.8
Msa0678130 AT5G11510.2 44.340 106 58 1 13 118 79 183 1.27e-26 110
Msa0678130 AT5G11510.2 33.333 114 74 2 15 127 29 141 6.31e-14 72.4
Msa0678130 AT5G11510.5 44.340 106 58 1 13 118 79 183 1.28e-26 110
Msa0678130 AT5G11510.5 33.333 114 74 2 15 127 29 141 6.12e-14 72.8
Msa0678130 AT3G50060.1 39.416 137 81 2 15 150 6 141 2.87e-26 105
Msa0678130 AT5G58850.1 44.660 103 54 2 15 116 105 205 7.68e-26 106
Msa0678130 AT3G09230.1 40.268 149 75 3 15 159 55 193 8.41e-26 105
Msa0678130 AT5G14750.4 52.000 100 37 3 59 158 1 89 8.57e-26 100
Msa0678130 AT5G14750.2 52.000 100 37 3 59 158 1 89 8.57e-26 100
Msa0678130 AT3G23250.2 70.000 60 18 0 59 118 1 60 1.01e-25 102
Msa0678130 AT4G33450.1 40.136 147 77 3 8 154 12 147 1.08e-25 102
Msa0678130 AT1G69560.1 46.296 108 55 2 10 116 102 207 1.59e-25 103
Msa0678130 AT5G67300.1 47.059 102 53 1 15 116 6 106 1.60e-25 103
Msa0678130 AT1G17950.1 49.515 103 49 2 15 116 5 105 1.88e-25 102
Msa0678130 AT1G69560.2 46.296 108 55 2 10 116 118 223 2.10e-25 103
Msa0678130 AT5G40360.1 43.519 108 58 2 9 115 152 257 2.86e-25 103
Msa0678130 AT1G22640.3 39.706 136 64 3 59 187 1 125 8.88e-25 99.0
Msa0678130 AT5G02320.1 45.192 104 56 1 15 118 127 229 8.91e-25 104
Msa0678130 AT5G02320.1 34.783 115 73 2 15 128 75 188 2.32e-13 70.5
Msa0678130 AT5G02320.2 45.192 104 56 1 15 118 127 229 8.91e-25 104
Msa0678130 AT5G02320.2 34.783 115 73 2 15 128 75 188 2.32e-13 70.5
Msa0678130 AT5G11050.1 43.689 103 55 2 15 116 105 205 1.01e-24 103
Msa0678130 AT5G02320.3 45.192 104 56 1 15 118 67 169 1.14e-24 103
Msa0678130 AT5G02320.3 35.714 126 76 4 7 128 4 128 6.18e-14 72.4
Msa0678130 AT1G66380.3 65.753 73 25 0 44 116 6 78 1.51e-24 95.9
Msa0678130 AT1G26780.2 46.667 105 53 2 13 116 96 198 1.82e-24 101
Msa0678130 AT1G26780.1 47.573 103 51 2 15 116 98 198 2.09e-24 100
Msa0678130 AT3G09370.1 45.283 106 49 2 15 116 130 230 2.65e-24 102
Msa0678130 AT3G09370.1 33.333 114 74 2 15 127 78 190 9.27e-12 65.9
Msa0678130 AT3G09370.2 45.283 106 49 2 15 116 135 235 2.93e-24 102
Msa0678130 AT3G09370.2 33.333 114 74 2 15 127 83 195 9.24e-12 65.9
Msa0678130 AT3G09370.3 45.283 106 49 2 15 116 143 243 4.54e-24 102
Msa0678130 AT3G09370.3 33.043 115 75 2 15 128 91 204 8.51e-12 65.9
Msa0678130 AT4G37260.1 45.098 102 55 1 15 116 13 113 6.23e-24 99.8
Msa0678130 AT3G29020.1 34.965 143 90 2 15 157 65 204 1.93e-23 96.3
Msa0678130 AT1G73410.1 50.000 104 49 2 15 117 6 107 2.05e-23 96.7
Msa0678130 AT3G29020.2 36.220 127 80 1 15 141 67 192 2.26e-23 97.8
Msa0678130 AT4G32730.5 41.509 106 61 1 13 118 85 189 2.29e-23 100
Msa0678130 AT4G32730.5 32.456 114 75 2 15 127 35 147 3.58e-13 70.5
Msa0678130 AT4G32730.4 41.509 106 61 1 13 118 85 189 2.29e-23 100
Msa0678130 AT4G32730.4 32.456 114 75 2 15 127 35 147 3.58e-13 70.5
Msa0678130 AT4G32730.3 41.509 106 61 1 13 118 85 189 2.29e-23 100
Msa0678130 AT4G32730.3 32.456 114 75 2 15 127 35 147 3.58e-13 70.5
Msa0678130 AT4G32730.2 41.509 106 61 1 13 118 85 189 2.29e-23 100
Msa0678130 AT4G32730.2 32.456 114 75 2 15 127 35 147 3.58e-13 70.5
Msa0678130 AT4G32730.1 41.509 106 61 1 13 118 85 189 2.66e-23 100
Msa0678130 AT4G32730.1 32.456 114 75 2 15 127 35 147 3.69e-13 70.1
Msa0678130 AT5G17800.1 38.346 133 79 2 15 145 93 224 4.09e-23 97.4
Msa0678130 AT2G23290.1 44.118 102 56 1 15 116 13 113 4.55e-23 97.1
Msa0678130 AT1G73410.2 50.485 103 48 2 15 116 6 106 6.37e-23 94.4
Msa0678130 AT2G39880.1 45.283 106 49 2 15 116 50 150 1.61e-22 96.3
Msa0678130 AT1G18960.1 41.463 123 60 4 6 125 4 117 2.09e-22 95.1
Msa0678130 AT3G55730.1 36.429 140 84 3 15 153 56 191 2.74e-22 96.3
Msa0678130 AT2G25230.1 42.857 112 60 3 9 119 20 128 4.63e-22 92.8
Msa0678130 AT1G66380.2 56.098 82 36 0 12 93 7 88 1.00e-21 88.2
Msa0678130 AT1G71030.2 56.061 66 29 0 52 117 5 70 5.08e-21 88.6
Msa0678130 AT5G39700.1 41.322 121 64 2 8 125 49 165 6.24e-21 88.6
Msa0678130 AT1G71030.1 56.061 66 29 0 52 117 19 84 7.06e-21 88.6
Msa0678130 AT2G37630.1 42.708 96 53 1 18 111 7 102 8.62e-20 89.0
Msa0678130 AT5G40430.1 40.171 117 65 4 2 117 41 153 7.25e-19 84.3
Msa0678130 AT4G00540.2 39.640 111 61 3 13 119 101 209 6.42e-18 83.6
Msa0678130 AT4G00540.2 33.058 121 73 2 15 127 46 166 2.06e-12 67.4
Msa0678130 AT4G00540.1 39.640 111 61 3 13 119 99 207 9.72e-18 83.6
Msa0678130 AT4G00540.1 33.058 121 73 2 15 127 44 164 2.55e-12 67.4
Msa0678130 AT1G14350.2 35.507 138 79 3 17 153 27 155 3.41e-17 81.6
Msa0678130 AT1G14350.1 35.507 138 79 3 17 153 27 155 3.41e-17 81.6
Msa0678130 AT3G18100.1 33.333 123 76 2 14 136 545 661 4.80e-16 79.0
Msa0678130 AT3G18100.3 33.333 123 76 2 14 136 497 613 6.57e-16 78.6
Msa0678130 AT3G18100.4 33.333 123 76 2 14 136 384 500 7.96e-16 78.2
Msa0678130 AT2G02820.1 39.423 104 60 2 17 119 32 133 9.75e-16 77.4
Msa0678130 AT2G02820.2 37.963 108 64 2 17 123 32 137 1.09e-15 77.4
Msa0678130 AT3G18100.2 33.333 123 76 2 14 136 332 448 1.15e-15 77.8
Msa0678130 AT2G02820.3 40.385 104 59 2 17 119 32 133 1.53e-15 76.3
Msa0678130 AT5G59780.1 59.574 47 19 0 71 117 1 47 6.70e-14 68.9
Msa0678130 AT3G46130.2 59.574 47 19 0 71 117 1 47 9.70e-14 68.9
Msa0678130 AT4G25560.2 60.870 46 18 0 71 116 2 47 6.13e-13 67.4
Msa0678130 AT1G14350.3 36.082 97 55 1 57 153 23 112 3.93e-11 63.5
Msa0678130 AT1G14350.4 36.082 97 55 1 57 153 23 112 3.93e-11 63.5

Find 51 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCGTGGGTGAAAGATTT+TGG 0.173825 4_4:-32904183 Msa0678130:CDS
CACTATTCCACTTGGTATAT+TGG 0.178190 4_4:+32904150 None:intergenic
ACCACTTATGTGGATGATTT+TGG 0.182493 4_4:-32904226 Msa0678130:CDS
TGTGATCAACTCTCTTCTTT+AGG 0.212201 4_4:+32904428 None:intergenic
CTTTCATCGCATGAATGATT+TGG 0.226490 4_4:+32904067 None:intergenic
GCCGGTGATGTCTGAGGTTT+TGG 0.267080 4_4:+32904309 None:intergenic
ATTGCTTATGTCACTAGATA+TGG 0.291146 4_4:-32904810 Msa0678130:CDS
CGCCAACTTCCCAAGTTTGC+AGG 0.293097 4_4:-32904774 Msa0678130:intron
GTGATCAACTCTCTTCTTTA+GGG 0.294729 4_4:+32904429 None:intergenic
TAGTATATGATGAGGATATT+TGG 0.326391 4_4:-32903892 Msa0678130:CDS
ACTTCATTATCTGTTCTTCC+AGG 0.339491 4_4:+32904472 None:intergenic
GATGAAGCAAGTGGTGATAA+AGG 0.340172 4_4:+32904286 None:intergenic
CTAGATATGGTTGCTGGAAT+TGG 0.347558 4_4:-32904797 Msa0678130:CDS
ACATTGAATCCACAAAAGAT+AGG 0.404787 4_4:-32904369 Msa0678130:CDS
ATATTAATTACCTGCAAACT+TGG 0.407998 4_4:+32904764 None:intergenic
CATGGACTGCTGAAGAAGAT+AGG 0.410291 4_4:-32904839 Msa0678130:CDS
ATAATGAAGTGAAGAACTAT+TGG 0.433566 4_4:-32904459 Msa0678130:CDS
TCCATTGCGGCCGAGTTACC+TGG 0.444960 4_4:-32904490 Msa0678130:CDS
ATGTCACTAGATATGGTTGC+TGG 0.454705 4_4:-32904803 Msa0678130:CDS
TCGGCAAAGGTGTCAGCAAT+TGG 0.456772 4_4:+32903936 None:intergenic
TACCTGCAAACTTGGGAAGT+TGG 0.466120 4_4:+32904772 None:intergenic
CTAAGACCTAATATCAAAAG+AGG 0.476128 4_4:-32904580 Msa0678130:CDS
TCAGCAATTGGCTTGGAACT+TGG 0.483881 4_4:+32903948 None:intergenic
ACCAAAATCATCCACATAAG+TGG 0.485724 4_4:+32904225 None:intergenic
ATCTGTTCTTCCAGGTAACT+CGG 0.488002 4_4:+32904480 None:intergenic
ATGAAGCAAGTGGTGATAAA+GGG 0.492786 4_4:+32904287 None:intergenic
TTTCAGGTCTTTCAAGGTGT+GGG 0.511467 4_4:-32904633 Msa0678130:intron
TCCAGGTAACTCGGCCGCAA+TGG 0.515613 4_4:+32904489 None:intergenic
ATTTCAGGTCTTTCAAGGTG+TGG 0.520974 4_4:-32904634 Msa0678130:intron
ATTGCTGACACCTTTGCCGA+TGG 0.525845 4_4:-32903933 Msa0678130:CDS
TATTAATTACCTGCAAACTT+GGG 0.536627 4_4:+32904765 None:intergenic
CATTGAATCCACAAAAGATA+GGG 0.551489 4_4:-32904368 Msa0678130:CDS
TTCCACTTGGTATATTGGAA+AGG 0.559070 4_4:+32904155 None:intergenic
AGATCACAGTACCACTTATG+TGG 0.565693 4_4:-32904236 Msa0678130:CDS
GGAAGAGTTGTAGATTGAGA+TGG 0.566126 4_4:-32904612 Msa0678130:CDS
TGGAGGAGTAACTTGATGAA+AGG 0.568052 4_4:+32904339 None:intergenic
ATTCCAAAATCTTTCACCCA+CGG 0.569681 4_4:+32904180 None:intergenic
TATTCAGATTCCATCGGCAA+AGG 0.574722 4_4:+32903923 None:intergenic
AAACTTCACTCAACAAGAAG+AGG 0.574927 4_4:-32904557 Msa0678130:CDS
AAAGGTGTCAGCAATTGGCT+TGG 0.581520 4_4:+32903941 None:intergenic
AGATGAAATTATAGAATCCG+TGG 0.583848 4_4:-32904197 Msa0678130:CDS
AGCAAGTGGTGATAAAGGGC+CGG 0.591439 4_4:+32904291 None:intergenic
GTGGAATGAGGAAAGGAACA+TGG 0.591827 4_4:-32904857 Msa0678130:CDS
TTGTTCTGCACTATTCCACT+TGG 0.600726 4_4:+32904142 None:intergenic
GACCTTTCCAATATACCAAG+TGG 0.602568 4_4:-32904157 Msa0678130:CDS
TCCAAAACCTCAGACATCAC+CGG 0.627605 4_4:-32904310 Msa0678130:CDS
GAATAGATGGTCATCCATTG+CGG 0.633326 4_4:-32904503 Msa0678130:CDS
AATTCACTTGATGAAGCAAG+TGG 0.639681 4_4:+32904277 None:intergenic
GATGAAATTATAGAATCCGT+GGG 0.646480 4_4:-32904196 Msa0678130:CDS
TAAAGGGCCGGTGATGTCTG+AGG 0.656668 4_4:+32904303 None:intergenic
ACTGTGATCTGAATAATCTG+TGG 0.669958 4_4:+32904249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGTAATTAATATATAGAACT+TGG - chr4_4:32904021-32904040 Msa0678130:CDS 20.0%
!! ATGATGCTTAAAAAAAATTG+TGG - chr4_4:32904073-32904092 Msa0678130:CDS 20.0%
!! AAAAATCAAGATACTAATGT+TGG - chr4_4:32904671-32904690 Msa0678130:intron 20.0%
!!! TTTGTTTTGGATAATGATTT+TGG - chr4_4:32904731-32904750 Msa0678130:intron 20.0%
!!! TTTTTCTATAGTATATGATG+AGG - chr4_4:32904874-32904893 Msa0678130:CDS 20.0%
!! GGTAATTAATATATAGAACT+TGG - chr4_4:32904021-32904040 Msa0678130:CDS 20.0%
!! ATGATGCTTAAAAAAAATTG+TGG - chr4_4:32904073-32904092 Msa0678130:CDS 20.0%
!! AAAAATCAAGATACTAATGT+TGG - chr4_4:32904671-32904690 Msa0678130:intron 20.0%
!!! TTTGTTTTGGATAATGATTT+TGG - chr4_4:32904731-32904750 Msa0678130:intron 20.0%
!!! TTTTTCTATAGTATATGATG+AGG - chr4_4:32904874-32904893 Msa0678130:CDS 20.0%
! TATTAATTACCTGCAAACTT+GGG + chr4_4:32904012-32904031 None:intergenic 25.0%
! ATATTAATTACCTGCAAACT+TGG + chr4_4:32904013-32904032 None:intergenic 25.0%
!!! ATTGCATCGTTTTTTATTTC+AGG - chr4_4:32904125-32904144 Msa0678130:CDS 25.0%
!!! TTTTTATTTCAGGTCTTTCA+AGG - chr4_4:32904135-32904154 Msa0678130:CDS 25.0%
!! AAGTTTCCTCTTTTGATATT+AGG + chr4_4:32904203-32904222 None:intergenic 25.0%
! ATAATGAAGTGAAGAACTAT+TGG - chr4_4:32904315-32904334 Msa0678130:CDS 25.0%
!!! AGTCAACAATTGATAGTTTT+TGG - chr4_4:32904777-32904796 Msa0678130:CDS 25.0%
! GAAAAATATTCAGATTCCAT+CGG + chr4_4:32904860-32904879 None:intergenic 25.0%
! TAGTATATGATGAGGATATT+TGG - chr4_4:32904882-32904901 Msa0678130:CDS 25.0%
! TATTAATTACCTGCAAACTT+GGG + chr4_4:32904012-32904031 None:intergenic 25.0%
! ATATTAATTACCTGCAAACT+TGG + chr4_4:32904013-32904032 None:intergenic 25.0%
!!! ATTGCATCGTTTTTTATTTC+AGG - chr4_4:32904125-32904144 Msa0678130:CDS 25.0%
!!! TTTTTATTTCAGGTCTTTCA+AGG - chr4_4:32904135-32904154 Msa0678130:CDS 25.0%
!! AAGTTTCCTCTTTTGATATT+AGG + chr4_4:32904203-32904222 None:intergenic 25.0%
! ATAATGAAGTGAAGAACTAT+TGG - chr4_4:32904315-32904334 Msa0678130:CDS 25.0%
!!! AGTCAACAATTGATAGTTTT+TGG - chr4_4:32904777-32904796 Msa0678130:CDS 25.0%
! GAAAAATATTCAGATTCCAT+CGG + chr4_4:32904860-32904879 None:intergenic 25.0%
! TAGTATATGATGAGGATATT+TGG - chr4_4:32904882-32904901 Msa0678130:CDS 25.0%
AAAAAAAGTGGAATGAGGAA+AGG - chr4_4:32903910-32903929 Msa0678130:CDS 30.0%
ATTGCTTATGTCACTAGATA+TGG - chr4_4:32903964-32903983 Msa0678130:CDS 30.0%
AAGTTCAATATCCAAACTTC+AGG + chr4_4:32904048-32904067 None:intergenic 30.0%
CTAAGACCTAATATCAAAAG+AGG - chr4_4:32904194-32904213 Msa0678130:CDS 30.0%
ATAAAAAGCTTGGGAATAGA+TGG - chr4_4:32904258-32904277 Msa0678130:CDS 30.0%
!! GGATTCAATGTCTTTTGATT+TGG + chr4_4:32904396-32904415 None:intergenic 30.0%
ACATTGAATCCACAAAAGAT+AGG - chr4_4:32904405-32904424 Msa0678130:CDS 30.0%
CATTGAATCCACAAAAGATA+GGG - chr4_4:32904406-32904425 Msa0678130:CDS 30.0%
AGATGAAATTATAGAATCCG+TGG - chr4_4:32904577-32904596 Msa0678130:CDS 30.0%
GATGAAATTATAGAATCCGT+GGG - chr4_4:32904578-32904597 Msa0678130:CDS 30.0%
!!! ATGCGATGAAAGTTTTGTTT+TGG - chr4_4:32904718-32904737 Msa0678130:intron 30.0%
AAAAAAAGTGGAATGAGGAA+AGG - chr4_4:32903910-32903929 Msa0678130:CDS 30.0%
ATTGCTTATGTCACTAGATA+TGG - chr4_4:32903964-32903983 Msa0678130:CDS 30.0%
AAGTTCAATATCCAAACTTC+AGG + chr4_4:32904048-32904067 None:intergenic 30.0%
CTAAGACCTAATATCAAAAG+AGG - chr4_4:32904194-32904213 Msa0678130:CDS 30.0%
ATAAAAAGCTTGGGAATAGA+TGG - chr4_4:32904258-32904277 Msa0678130:CDS 30.0%
!! GGATTCAATGTCTTTTGATT+TGG + chr4_4:32904396-32904415 None:intergenic 30.0%
ACATTGAATCCACAAAAGAT+AGG - chr4_4:32904405-32904424 Msa0678130:CDS 30.0%
CATTGAATCCACAAAAGATA+GGG - chr4_4:32904406-32904425 Msa0678130:CDS 30.0%
AGATGAAATTATAGAATCCG+TGG - chr4_4:32904577-32904596 Msa0678130:CDS 30.0%
GATGAAATTATAGAATCCGT+GGG - chr4_4:32904578-32904597 Msa0678130:CDS 30.0%
!!! ATGCGATGAAAGTTTTGTTT+TGG - chr4_4:32904718-32904737 Msa0678130:intron 30.0%
!!! CCACTTTTTTTGTCACATGA+AGG + chr4_4:32903901-32903920 None:intergenic 35.0%
CCTTCATGTGACAAAAAAAG+TGG - chr4_4:32903898-32903917 Msa0678130:CDS 35.0%
GTGACAAAAAAAGTGGAATG+AGG - chr4_4:32903905-32903924 Msa0678130:CDS 35.0%
AAACTTCACTCAACAAGAAG+AGG - chr4_4:32904217-32904236 Msa0678130:CDS 35.0%
TTCCGAATGCATAAAAAGCT+TGG - chr4_4:32904248-32904267 Msa0678130:CDS 35.0%
TCCGAATGCATAAAAAGCTT+GGG - chr4_4:32904249-32904268 Msa0678130:CDS 35.0%
! TCCCAAGCTTTTTATGCATT+CGG + chr4_4:32904253-32904272 None:intergenic 35.0%
ACTTCATTATCTGTTCTTCC+AGG + chr4_4:32904305-32904324 None:intergenic 35.0%
GTGATCAACTCTCTTCTTTA+GGG + chr4_4:32904348-32904367 None:intergenic 35.0%
TGTGATCAACTCTCTTCTTT+AGG + chr4_4:32904349-32904368 None:intergenic 35.0%
! GGAAATATCCCTATCTTTTG+TGG + chr4_4:32904417-32904436 None:intergenic 35.0%
ATGAAGCAAGTGGTGATAAA+GGG + chr4_4:32904490-32904509 None:intergenic 35.0%
AATTCACTTGATGAAGCAAG+TGG + chr4_4:32904500-32904519 None:intergenic 35.0%
ACTGTGATCTGAATAATCTG+TGG + chr4_4:32904528-32904547 None:intergenic 35.0%
! ACCACTTATGTGGATGATTT+TGG - chr4_4:32904548-32904567 Msa0678130:CDS 35.0%
ACCAAAATCATCCACATAAG+TGG + chr4_4:32904552-32904571 None:intergenic 35.0%
ATTCCAAAATCTTTCACCCA+CGG + chr4_4:32904597-32904616 None:intergenic 35.0%
TTCCACTTGGTATATTGGAA+AGG + chr4_4:32904622-32904641 None:intergenic 35.0%
CACTATTCCACTTGGTATAT+TGG + chr4_4:32904627-32904646 None:intergenic 35.0%
CTTTCATCGCATGAATGATT+TGG + chr4_4:32904710-32904729 None:intergenic 35.0%
!!! CCACTTTTTTTGTCACATGA+AGG + chr4_4:32903901-32903920 None:intergenic 35.0%
CCTTCATGTGACAAAAAAAG+TGG - chr4_4:32903898-32903917 Msa0678130:CDS 35.0%
GTGACAAAAAAAGTGGAATG+AGG - chr4_4:32903905-32903924 Msa0678130:CDS 35.0%
AAACTTCACTCAACAAGAAG+AGG - chr4_4:32904217-32904236 Msa0678130:CDS 35.0%
TTCCGAATGCATAAAAAGCT+TGG - chr4_4:32904248-32904267 Msa0678130:CDS 35.0%
TCCGAATGCATAAAAAGCTT+GGG - chr4_4:32904249-32904268 Msa0678130:CDS 35.0%
! TCCCAAGCTTTTTATGCATT+CGG + chr4_4:32904253-32904272 None:intergenic 35.0%
ACTTCATTATCTGTTCTTCC+AGG + chr4_4:32904305-32904324 None:intergenic 35.0%
GTGATCAACTCTCTTCTTTA+GGG + chr4_4:32904348-32904367 None:intergenic 35.0%
TGTGATCAACTCTCTTCTTT+AGG + chr4_4:32904349-32904368 None:intergenic 35.0%
! GGAAATATCCCTATCTTTTG+TGG + chr4_4:32904417-32904436 None:intergenic 35.0%
ATGAAGCAAGTGGTGATAAA+GGG + chr4_4:32904490-32904509 None:intergenic 35.0%
AATTCACTTGATGAAGCAAG+TGG + chr4_4:32904500-32904519 None:intergenic 35.0%
ACTGTGATCTGAATAATCTG+TGG + chr4_4:32904528-32904547 None:intergenic 35.0%
! ACCACTTATGTGGATGATTT+TGG - chr4_4:32904548-32904567 Msa0678130:CDS 35.0%
ACCAAAATCATCCACATAAG+TGG + chr4_4:32904552-32904571 None:intergenic 35.0%
ATTCCAAAATCTTTCACCCA+CGG + chr4_4:32904597-32904616 None:intergenic 35.0%
TTCCACTTGGTATATTGGAA+AGG + chr4_4:32904622-32904641 None:intergenic 35.0%
CACTATTCCACTTGGTATAT+TGG + chr4_4:32904627-32904646 None:intergenic 35.0%
CTTTCATCGCATGAATGATT+TGG + chr4_4:32904710-32904729 None:intergenic 35.0%
ATGTCACTAGATATGGTTGC+TGG - chr4_4:32903971-32903990 Msa0678130:CDS 40.0%
CTAGATATGGTTGCTGGAAT+TGG - chr4_4:32903977-32903996 Msa0678130:CDS 40.0%
TAGAACTTGGACCTGAAGTT+TGG - chr4_4:32904034-32904053 Msa0678130:CDS 40.0%
! ATTTCAGGTCTTTCAAGGTG+TGG - chr4_4:32904140-32904159 Msa0678130:CDS 40.0%
! TTTCAGGTCTTTCAAGGTGT+GGG - chr4_4:32904141-32904160 Msa0678130:CDS 40.0%
GGAAGAGTTGTAGATTGAGA+TGG - chr4_4:32904162-32904181 Msa0678130:CDS 40.0%
GAATAGATGGTCATCCATTG+CGG - chr4_4:32904271-32904290 Msa0678130:CDS 40.0%
ATCTGTTCTTCCAGGTAACT+CGG + chr4_4:32904297-32904316 None:intergenic 40.0%
TGGAGGAGTAACTTGATGAA+AGG + chr4_4:32904438-32904457 None:intergenic 40.0%
GATGAAGCAAGTGGTGATAA+AGG + chr4_4:32904491-32904510 None:intergenic 40.0%
AGATCACAGTACCACTTATG+TGG - chr4_4:32904538-32904557 Msa0678130:CDS 40.0%
! AATCCGTGGGTGAAAGATTT+TGG - chr4_4:32904591-32904610 Msa0678130:CDS 40.0%
GACCTTTCCAATATACCAAG+TGG - chr4_4:32904617-32904636 Msa0678130:CDS 40.0%
TTGTTCTGCACTATTCCACT+TGG + chr4_4:32904635-32904654 None:intergenic 40.0%
TATTCAGATTCCATCGGCAA+AGG + chr4_4:32904854-32904873 None:intergenic 40.0%
ATGTCACTAGATATGGTTGC+TGG - chr4_4:32903971-32903990 Msa0678130:CDS 40.0%
CTAGATATGGTTGCTGGAAT+TGG - chr4_4:32903977-32903996 Msa0678130:CDS 40.0%
TAGAACTTGGACCTGAAGTT+TGG - chr4_4:32904034-32904053 Msa0678130:CDS 40.0%
! ATTTCAGGTCTTTCAAGGTG+TGG - chr4_4:32904140-32904159 Msa0678130:CDS 40.0%
! TTTCAGGTCTTTCAAGGTGT+GGG - chr4_4:32904141-32904160 Msa0678130:CDS 40.0%
GGAAGAGTTGTAGATTGAGA+TGG - chr4_4:32904162-32904181 Msa0678130:CDS 40.0%
GAATAGATGGTCATCCATTG+CGG - chr4_4:32904271-32904290 Msa0678130:CDS 40.0%
ATCTGTTCTTCCAGGTAACT+CGG + chr4_4:32904297-32904316 None:intergenic 40.0%
TGGAGGAGTAACTTGATGAA+AGG + chr4_4:32904438-32904457 None:intergenic 40.0%
GATGAAGCAAGTGGTGATAA+AGG + chr4_4:32904491-32904510 None:intergenic 40.0%
AGATCACAGTACCACTTATG+TGG - chr4_4:32904538-32904557 Msa0678130:CDS 40.0%
! AATCCGTGGGTGAAAGATTT+TGG - chr4_4:32904591-32904610 Msa0678130:CDS 40.0%
GACCTTTCCAATATACCAAG+TGG - chr4_4:32904617-32904636 Msa0678130:CDS 40.0%
TTGTTCTGCACTATTCCACT+TGG + chr4_4:32904635-32904654 None:intergenic 40.0%
TATTCAGATTCCATCGGCAA+AGG + chr4_4:32904854-32904873 None:intergenic 40.0%
GTGGAATGAGGAAAGGAACA+TGG - chr4_4:32903917-32903936 Msa0678130:CDS 45.0%
! CATGGACTGCTGAAGAAGAT+AGG - chr4_4:32903935-32903954 Msa0678130:CDS 45.0%
TACCTGCAAACTTGGGAAGT+TGG + chr4_4:32904005-32904024 None:intergenic 45.0%
!!! TCTGAGGTTTTGGAACTAGC+TGG + chr4_4:32904458-32904477 None:intergenic 45.0%
TCCAAAACCTCAGACATCAC+CGG - chr4_4:32904464-32904483 Msa0678130:CDS 45.0%
!! TCAGCAATTGGCTTGGAACT+TGG + chr4_4:32904829-32904848 None:intergenic 45.0%
!! AAAGGTGTCAGCAATTGGCT+TGG + chr4_4:32904836-32904855 None:intergenic 45.0%
GTGGAATGAGGAAAGGAACA+TGG - chr4_4:32903917-32903936 Msa0678130:CDS 45.0%
! CATGGACTGCTGAAGAAGAT+AGG - chr4_4:32903935-32903954 Msa0678130:CDS 45.0%
TACCTGCAAACTTGGGAAGT+TGG + chr4_4:32904005-32904024 None:intergenic 45.0%
!!! TCTGAGGTTTTGGAACTAGC+TGG + chr4_4:32904458-32904477 None:intergenic 45.0%
TCCAAAACCTCAGACATCAC+CGG - chr4_4:32904464-32904483 Msa0678130:CDS 45.0%
!! TCAGCAATTGGCTTGGAACT+TGG + chr4_4:32904829-32904848 None:intergenic 45.0%
!! AAAGGTGTCAGCAATTGGCT+TGG + chr4_4:32904836-32904855 None:intergenic 45.0%
!!! GAGGTTTTGGAACTAGCTGG+AGG + chr4_4:32904455-32904474 None:intergenic 50.0%
AGCAAGTGGTGATAAAGGGC+CGG + chr4_4:32904486-32904505 None:intergenic 50.0%
!! TCGGCAAAGGTGTCAGCAAT+TGG + chr4_4:32904841-32904860 None:intergenic 50.0%
ATTGCTGACACCTTTGCCGA+TGG - chr4_4:32904841-32904860 Msa0678130:CDS 50.0%
!!! GAGGTTTTGGAACTAGCTGG+AGG + chr4_4:32904455-32904474 None:intergenic 50.0%
AGCAAGTGGTGATAAAGGGC+CGG + chr4_4:32904486-32904505 None:intergenic 50.0%
!! TCGGCAAAGGTGTCAGCAAT+TGG + chr4_4:32904841-32904860 None:intergenic 50.0%
ATTGCTGACACCTTTGCCGA+TGG - chr4_4:32904841-32904860 Msa0678130:CDS 50.0%
CGCCAACTTCCCAAGTTTGC+AGG - chr4_4:32904000-32904019 Msa0678130:CDS 55.0%
!! GCCGGTGATGTCTGAGGTTT+TGG + chr4_4:32904468-32904487 None:intergenic 55.0%
TAAAGGGCCGGTGATGTCTG+AGG + chr4_4:32904474-32904493 None:intergenic 55.0%
CGCCAACTTCCCAAGTTTGC+AGG - chr4_4:32904000-32904019 Msa0678130:CDS 55.0%
!! GCCGGTGATGTCTGAGGTTT+TGG + chr4_4:32904468-32904487 None:intergenic 55.0%
TAAAGGGCCGGTGATGTCTG+AGG + chr4_4:32904474-32904493 None:intergenic 55.0%
TCCATTGCGGCCGAGTTACC+TGG - chr4_4:32904284-32904303 Msa0678130:CDS 60.0%
TCCAGGTAACTCGGCCGCAA+TGG + chr4_4:32904288-32904307 None:intergenic 60.0%
TCCATTGCGGCCGAGTTACC+TGG - chr4_4:32904284-32904303 Msa0678130:CDS 60.0%
TCCAGGTAACTCGGCCGCAA+TGG + chr4_4:32904288-32904307 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 32903886 32904910 32903886 ID=Msa0678130;Name=Msa0678130
chr4_4 mRNA 32903886 32904910 32903886 ID=Msa0678130-mRNA-1;Parent=Msa0678130;Name=Msa0678130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|299
chr4_4 exon 32904775 32904910 32904775 ID=Msa0678130-mRNA-1:exon:8091;Parent=Msa0678130-mRNA-1
chr4_4 exon 32903886 32904649 32903886 ID=Msa0678130-mRNA-1:exon:8090;Parent=Msa0678130-mRNA-1
chr4_4 CDS 32904775 32904910 32904775 ID=Msa0678130-mRNA-1:cds;Parent=Msa0678130-mRNA-1
chr4_4 CDS 32903886 32904649 32903886 ID=Msa0678130-mRNA-1:cds;Parent=Msa0678130-mRNA-1
Gene Sequence

>Msa0678130

ATGGCAAGAACTCCTTCATGTGACAAAAAAAGTGGAATGAGGAAAGGAACATGGACTGCTGAAGAAGATAGGAAATTAATTGCTTATGTCACTAGATATGGTTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTTCAAGGTGTGGGAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCTAATATCAAAAGAGGAAACTTCACTCAACAAGAAGAGGAGTTGATTTTCCGAATGCATAAAAAGCTTGGGAATAGATGGTCATCCATTGCGGCCGAGTTACCTGGAAGAACAGATAATGAAGTGAAGAACTATTGGCATACTTCCCTAAAGAAGAGAGTTGATCACAACGAAATCACAAATATTGAAGAAACCAAATCAAAAGACATTGAATCCACAAAAGATAGGGATATTTCCTTTCATCAAGTTACTCCTCCAGCTAGTTCCAAAACCTCAGACATCACCGGCCCTTTATCACCACTTGCTTCATCAAGTGAATTCTCTTCCACAGATTATTCAGATCACAGTACCACTTATGTGGATGATTTTGGTTTTCTAGATGAAATTATAGAATCCGTGGGTGAAAGATTTTGGAATGACCTTTCCAATATACCAAGTGGAATAGTGCAGAACAATACTAATTGTAATTTTAAAAATCAAGATACTAATGTTGGTTTTTTAGTGTCTCCAAATCATTCATGCGATGAAAGTTTTGTTTTGGATAATGATTTTGGAAGCTTTGTAGATACATACAACGAGTCAACAATTGATAGTTTTTGGACACAATCATATGAAGCTGCAATGCACCAAGTTCCAAGCCAATTGCTGACACCTTTGCCGATGGAATCTGAATATTTTTCTATAGTATATGATGAGGATATTTGGAGTTGA

Protein sequence

>Msa0678130

MARTPSCDKKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYLRPNIKRGNFTQQEEELIFRMHKKLGNRWSSIAAELPGRTDNEVKNYWHTSLKKRVDHNEITNIEETKSKDIESTKDRDISFHQVTPPASSKTSDITGPLSPLASSSEFSSTDYSDHSTTYVDDFGFLDEIIESVGERFWNDLSNIPSGIVQNNTNCNFKNQDTNVGFLVSPNHSCDESFVLDNDFGSFVDTYNESTIDSFWTQSYEAAMHQVPSQLLTPLPMESEYFSIVYDEDIWS*