Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156570 | RHN47182.1 | 72.277 | 303 | 76 | 3 | 2 | 297 | 4 | 305 | 3.52e-144 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156570 | A0A396H1E7 | 72.277 | 303 | 76 | 3 | 2 | 297 | 4 | 305 | 1.68e-144 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042550 | Msa1156570 | 0.810993 | 8.745312e-51 | -8.615850e-47 |
| Msa0054820 | Msa1156570 | 0.800108 | 1.682339e-48 | -8.615850e-47 |
| Msa0678090 | Msa1156570 | 0.817420 | 3.328112e-52 | -8.615850e-47 |
| Msa0678130 | Msa1156570 | 0.824639 | 7.236361e-54 | -8.615850e-47 |
| Msa0814710 | Msa1156570 | 0.823258 | 1.525768e-53 | -8.615850e-47 |
| Msa0836850 | Msa1156570 | 0.827891 | 1.217577e-54 | -8.615850e-47 |
| Msa0178510 | Msa1156570 | 0.809636 | 1.715996e-50 | -8.615850e-47 |
| Msa1038080 | Msa1156570 | 0.802647 | 5.080168e-49 | -8.615850e-47 |
| Msa1068570 | Msa1156570 | 0.820457 | 6.789351e-53 | -8.615850e-47 |
| Msa1068580 | Msa1156570 | 0.921745 | 2.412346e-88 | -8.615850e-47 |
| Msa1156560 | Msa1156570 | 0.813496 | 2.485122e-51 | -8.615850e-47 |
| Msa1156570 | Msa1307210 | 0.813570 | 2.393873e-51 | -8.615850e-47 |
| Msa1156570 | Msa1372150 | 0.811906 | 5.539538e-51 | -8.615850e-47 |
| Msa0843680 | Msa1156570 | 0.807867 | 4.097376e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156570 | MtrunA17_Chr7g0250171 | 72.277 | 303 | 76 | 3 | 2 | 297 | 4 | 305 | 3.23e-148 | 418 |
| Msa1156570 | MtrunA17_Chr7g0250191 | 68.056 | 216 | 59 | 4 | 83 | 295 | 3 | 211 | 3.42e-94 | 277 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTTATATGTGTCATTTC+TGG | 0.132050 | 7_4:-44967119 | None:intergenic |
| ACATCAACATCTTCAAATTT+TGG | 0.154340 | 7_4:-44967413 | None:intergenic |
| CTAATTTGGTTTGCAACTTT+AGG | 0.182380 | 7_4:+44967308 | Msa1156570:CDS |
| TGTTCAAGCTGCCTCTAATT+TGG | 0.218520 | 7_4:+44967294 | Msa1156570:CDS |
| TAATTTGGTTTGCAACTTTA+GGG | 0.221416 | 7_4:+44967309 | Msa1156570:CDS |
| ATGTCAGTATCCCACAAATA+AGG | 0.248587 | 7_4:-44967346 | None:intergenic |
| GATTGTTGTAAGTAGAATTT+AGG | 0.277117 | 7_4:-44964640 | None:intergenic |
| GAAGTATCACTTGGCCTTAC+TGG | 0.314175 | 7_4:+44966959 | Msa1156570:CDS |
| AAACACTAGTACTTCCATTT+GGG | 0.341024 | 7_4:+44967075 | Msa1156570:CDS |
| CAAACACTAGTACTTCCATT+TGG | 0.352225 | 7_4:+44967074 | Msa1156570:CDS |
| GGAAAGTCCTTCTCAGTATA+AGG | 0.357312 | 7_4:+44964358 | Msa1156570:CDS |
| AATTGCTCTCACAACATTCA+TGG | 0.375300 | 7_4:+44964337 | Msa1156570:CDS |
| GTAGTATGTGTCAGTTTCCT+TGG | 0.375510 | 7_4:+44966981 | Msa1156570:CDS |
| CAGCTAGATTGCTGTCGTTC+GGG | 0.388554 | 7_4:-44964616 | None:intergenic |
| GTTCGCAAGGCTTCAAAGAT+TGG | 0.388942 | 7_4:+44967257 | Msa1156570:CDS |
| TTGGGCTTTCCCTTATTTGT+GGG | 0.389548 | 7_4:+44967336 | Msa1156570:CDS |
| TACTATTAGCTTACTTGAGC+TGG | 0.394727 | 7_4:+44967369 | Msa1156570:CDS |
| ACAATAAAGCTTGGTCTACC+TGG | 0.395524 | 7_4:+44964383 | Msa1156570:CDS |
| TCAGCTAGATTGCTGTCGTT+CGG | 0.400416 | 7_4:-44964617 | None:intergenic |
| AGCTGGAGGTTTCTATCTAA+AGG | 0.404098 | 7_4:+44967386 | Msa1156570:CDS |
| CCCAATTGAAAATATTCAAA+TGG | 0.405093 | 7_4:-44967029 | None:intergenic |
| AAAGTTGCAAACCAAATTAG+AGG | 0.408137 | 7_4:-44967305 | None:intergenic |
| GTTGGGCTTTCCCTTATTTG+TGG | 0.414187 | 7_4:+44967335 | Msa1156570:CDS |
| GCTGGAGGTTTCTATCTAAA+GGG | 0.425018 | 7_4:+44967387 | Msa1156570:CDS |
| GAAGCCTTGCGAACCAGCTC+GGG | 0.426460 | 7_4:-44967248 | None:intergenic |
| GCTTCAAATGCTTCCCCAAA+TGG | 0.433308 | 7_4:-44967089 | None:intergenic |
| TTGCAACTTTAGGGGCCGTT+GGG | 0.438171 | 7_4:+44967318 | Msa1156570:CDS |
| ATAGATGCTGAATCATAATC+AGG | 0.453987 | 7_4:-44964533 | None:intergenic |
| TTTGCAACTTTAGGGGCCGT+TGG | 0.466143 | 7_4:+44967317 | Msa1156570:CDS |
| AAATTCTACTTACAACAATC+AGG | 0.468447 | 7_4:+44964643 | Msa1156570:CDS |
| TGTCAGTATCCCACAAATAA+GGG | 0.470795 | 7_4:-44967345 | None:intergenic |
| ACAAACTAAAGAAGCACAAT+GGG | 0.475638 | 7_4:-44964263 | None:intergenic |
| CTTTCCCGAGCTGGTTCGCA+AGG | 0.485434 | 7_4:+44967244 | Msa1156570:CDS |
| AAACGTGCACATGGTGGCAG+TGG | 0.494856 | 7_4:-44964127 | None:intergenic |
| TCAAAGATTGGTGTTGATTG+TGG | 0.504309 | 7_4:+44967269 | Msa1156570:CDS |
| TGAAGCCTTGCGAACCAGCT+CGG | 0.505111 | 7_4:-44967249 | None:intergenic |
| ATAAAGAAAATCTGCAGTCC+AGG | 0.505330 | 7_4:-44967191 | None:intergenic |
| CATTCCTCCGAAGTATCACT+TGG | 0.516165 | 7_4:+44966950 | Msa1156570:CDS |
| ATCTGCAGTCCAGGTTGTAG+TGG | 0.522511 | 7_4:-44967182 | None:intergenic |
| TTGCTGTCGTTCGGGTAAGA+AGG | 0.524888 | 7_4:-44964608 | None:intergenic |
| TCAATACTAACAGCATGATA+AGG | 0.533799 | 7_4:-44964575 | None:intergenic |
| ATTGTGGCCTTATACTGAGA+AGG | 0.537066 | 7_4:-44964365 | None:intergenic |
| TATAAGGCCACAATAAAGCT+TGG | 0.551579 | 7_4:+44964374 | Msa1156570:CDS |
| TTGGTTGTTCCACTACAACC+TGG | 0.556558 | 7_4:+44967173 | Msa1156570:CDS |
| AACGTGCACATGGTGGCAGT+GGG | 0.556975 | 7_4:-44964126 | None:intergenic |
| AAAATTTAGGAAACACCAAA+CGG | 0.557256 | 7_4:+44966868 | Msa1156570:CDS |
| AATGGAAGTACTAGTGTTTG+TGG | 0.557765 | 7_4:-44967071 | None:intergenic |
| AATTTGGTTTGCAACTTTAG+GGG | 0.569231 | 7_4:+44967310 | Msa1156570:CDS |
| ACTGACACATACTACCAGTA+AGG | 0.577505 | 7_4:-44966973 | None:intergenic |
| AACAAACTAAAGAAGCACAA+TGG | 0.581852 | 7_4:-44964264 | None:intergenic |
| AGTAAGGCCAAGTGATACTT+CGG | 0.588305 | 7_4:-44966957 | None:intergenic |
| GGATGGAACTGAGGATATGA+TGG | 0.588658 | 7_4:+44967467 | Msa1156570:exon |
| GTGAGAGCAATTTCTCGTGA+AGG | 0.588885 | 7_4:-44964326 | None:intergenic |
| ATCATGCTGTTAGTATTGAG+TGG | 0.592210 | 7_4:+44964579 | Msa1156570:CDS |
| TATTAGCTTACTTGAGCTGG+AGG | 0.596182 | 7_4:+44967372 | Msa1156570:CDS |
| AGGTAGACCAAGCTTTATTG+TGG | 0.597597 | 7_4:-44964381 | None:intergenic |
| CAATAAAGCTTGGTCTACCT+GGG | 0.602941 | 7_4:+44964384 | Msa1156570:CDS |
| AACACTAGTACTTCCATTTG+GGG | 0.606040 | 7_4:+44967076 | Msa1156570:CDS |
| TTGAAAATATTCAAATGGAG+CGG | 0.606455 | 7_4:-44967024 | None:intergenic |
| AGAAGCACAATGGGAAACAG+TGG | 0.609168 | 7_4:-44964254 | None:intergenic |
| TGGGGTTAAACAAGATCCAT+CGG | 0.612285 | 7_4:-44964107 | None:intergenic |
| TATCTCAAACAGTAGACAGA+AGG | 0.618745 | 7_4:+44964493 | Msa1156570:intron |
| ACAAATAAGGGAAAGCCCAA+CGG | 0.623964 | 7_4:-44967333 | None:intergenic |
| GTATAAAGAAAACGTGCACA+TGG | 0.642424 | 7_4:-44964136 | None:intergenic |
| AAGTAAAGTGCATAAAACAA+AGG | 0.667706 | 7_4:-44967644 | None:intergenic |
| ATATGATGGTGATTTAAACG+TGG | 0.673692 | 7_4:+44967481 | Msa1156570:three_prime_UTR |
| AAGGCCAAGTGATACTTCGG+AGG | 0.684694 | 7_4:-44966954 | None:intergenic |
| TGATGGTGATTTAAACGTGG+AGG | 0.697901 | 7_4:+44967484 | Msa1156570:three_prime_UTR |
| ACGTGCACATGGTGGCAGTG+GGG | 0.710296 | 7_4:-44964125 | None:intergenic |
| TAAAGAAAACGTGCACATGG+TGG | 0.711877 | 7_4:-44964133 | None:intergenic |
| GGAAGTACTAGTGTTTGTGG+TGG | 0.743406 | 7_4:-44967068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTATAAAAAATATT+TGG | - | chr7_4:44967604-44967623 | None:intergenic | 0.0% |
| !!! | AATATTTTTTATAAATAAAT+AGG | + | chr7_4:44967604-44967623 | Msa1156570:three_prime_UTR | 0.0% |
| !! | ATAAATAAGATTAAAATCTA+AGG | + | chr7_4:44966566-44966585 | Msa1156570:intron | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | + | chr7_4:44966567-44966586 | Msa1156570:intron | 10.0% |
| !!! | TTAGTTTTTCTTAAAATTAA+AGG | - | chr7_4:44966717-44966736 | None:intergenic | 10.0% |
| !!! | TTTAGAATTATTTAATTTCG+TGG | - | chr7_4:44964936-44964955 | None:intergenic | 15.0% |
| !! | TCTATATAAAATATCTTCAC+TGG | + | chr7_4:44965056-44965075 | Msa1156570:intron | 20.0% |
| !!! | ACCACAAAAAAATTAGTTTT+TGG | - | chr7_4:44965209-44965228 | None:intergenic | 20.0% |
| !! | ATGAACTCTCAAAAATAAAA+TGG | - | chr7_4:44965276-44965295 | None:intergenic | 20.0% |
| !! | TTAGACATAGAATTATGATT+AGG | - | chr7_4:44966408-44966427 | None:intergenic | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | - | chr7_4:44966482-44966501 | None:intergenic | 20.0% |
| !! | ACTTCTAACTATTAGAAAAA+TGG | - | chr7_4:44966657-44966676 | None:intergenic | 20.0% |
| !!! | TTTTAAGAAAAACTAAAGCA+TGG | + | chr7_4:44966721-44966740 | Msa1156570:intron | 20.0% |
| !! | TTTAAGAAAAACTAAAGCAT+GGG | + | chr7_4:44966722-44966741 | Msa1156570:intron | 20.0% |
| !!! | CCTAAATTTTTCAAGTATAA+AGG | - | chr7_4:44966858-44966877 | None:intergenic | 20.0% |
| !! | CCTTTATACTTGAAAAATTT+AGG | + | chr7_4:44966855-44966874 | Msa1156570:CDS | 20.0% |
| !!! | TCCATTTGAATATTTTCAAT+TGG | + | chr7_4:44967028-44967047 | Msa1156570:CDS | 20.0% |
| !!! | CCATTTGAATATTTTCAATT+GGG | + | chr7_4:44967029-44967048 | Msa1156570:CDS | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | - | chr7_4:44967580-44967599 | None:intergenic | 20.0% |
| ! | CTTAAGTAAGAGAATAATAC+TGG | - | chr7_4:44964431-44964450 | None:intergenic | 25.0% |
| ! | GATTGTTGTAAGTAGAATTT+AGG | - | chr7_4:44964643-44964662 | None:intergenic | 25.0% |
| ! | AAATTCTACTTACAACAATC+AGG | + | chr7_4:44964643-44964662 | Msa1156570:CDS | 25.0% |
| !!! | TTATTAGAAGCACTTTGTAT+AGG | - | chr7_4:44964674-44964693 | None:intergenic | 25.0% |
| ! | TGCTTCTAATAAAATGTTAC+TGG | + | chr7_4:44964682-44964701 | Msa1156570:intron | 25.0% |
| ! | GCATATATTCATCTAATTCA+AGG | - | chr7_4:44964713-44964732 | None:intergenic | 25.0% |
| !! | TATATGCTGTTTATTCTTCA+AGG | + | chr7_4:44964726-44964745 | Msa1156570:intron | 25.0% |
| !!! | ATATATATAGTTTTGACTCG+TGG | + | chr7_4:44964800-44964819 | Msa1156570:intron | 25.0% |
| ! | CTAAAGAATGATATAGTTTG+AGG | + | chr7_4:44965006-44965025 | Msa1156570:intron | 25.0% |
| !!! | GCCAAAAACTAATTTTTTTG+TGG | + | chr7_4:44965205-44965224 | Msa1156570:intron | 25.0% |
| ! | ATACATTATCCTACATCATA+TGG | - | chr7_4:44965299-44965318 | None:intergenic | 25.0% |
| !!! | AATTGATTTTTCATGCTTCT+AGG | + | chr7_4:44965628-44965647 | Msa1156570:intron | 25.0% |
| !!! | TAGTCATATTGCTATTTACT+TGG | + | chr7_4:44965781-44965800 | Msa1156570:intron | 25.0% |
| ! | TTCATCTATTGCCATATAAA+AGG | + | chr7_4:44965837-44965856 | Msa1156570:intron | 25.0% |
| ! | TCATCTATTGCCATATAAAA+GGG | + | chr7_4:44965838-44965857 | Msa1156570:intron | 25.0% |
| ! | ACAAAGACTTTAAGCTATAT+AGG | + | chr7_4:44965890-44965909 | Msa1156570:intron | 25.0% |
| ! | CTTTAAGCTATATAGGTTTA+TGG | + | chr7_4:44965897-44965916 | Msa1156570:intron | 25.0% |
| !!! | TTTTTTGCCAATTAATCTAG+CGG | + | chr7_4:44966225-44966244 | Msa1156570:intron | 25.0% |
| !!! | ATCACACATTTTTTAAGATG+TGG | + | chr7_4:44966252-44966271 | Msa1156570:intron | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | - | chr7_4:44966481-44966500 | None:intergenic | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | - | chr7_4:44966634-44966653 | None:intergenic | 25.0% |
| ! | AATGTAGTTTCAGAAGAATA+TGG | - | chr7_4:44966787-44966806 | None:intergenic | 25.0% |
| !! | GATATTTCATGTTTTTCTTC+AGG | + | chr7_4:44966812-44966831 | Msa1156570:intron | 25.0% |
| ! | AAAATTTAGGAAACACCAAA+CGG | + | chr7_4:44966868-44966887 | Msa1156570:CDS | 25.0% |
| ! | TTGAAAATATTCAAATGGAG+CGG | - | chr7_4:44967027-44967046 | None:intergenic | 25.0% |
| ! | CCCAATTGAAAATATTCAAA+TGG | - | chr7_4:44967032-44967051 | None:intergenic | 25.0% |
| !!! | TTTGTTATATGTGTCATTTC+TGG | - | chr7_4:44967122-44967141 | None:intergenic | 25.0% |
| !! | TTATTTTCTGACATTGATGT+TGG | + | chr7_4:44967154-44967173 | Msa1156570:CDS | 25.0% |
| !!! | TAATTTGGTTTGCAACTTTA+GGG | + | chr7_4:44967309-44967328 | Msa1156570:CDS | 25.0% |
| !! | ACATCAACATCTTCAAATTT+TGG | - | chr7_4:44967416-44967435 | None:intergenic | 25.0% |
| !! | GATGTTGATGTTAATTTTGA+TGG | + | chr7_4:44967425-44967444 | Msa1156570:CDS | 25.0% |
| ! | AAGTAAAGTGCATAAAACAA+AGG | - | chr7_4:44967647-44967666 | None:intergenic | 25.0% |
| ! | ACAAACTAAAGAAGCACAAT+GGG | - | chr7_4:44964266-44964285 | None:intergenic | 30.0% |
| ! | AACAAACTAAAGAAGCACAA+TGG | - | chr7_4:44964267-44964286 | None:intergenic | 30.0% |
| ! | CATGAATCAAAATTTTACCC+AGG | - | chr7_4:44964404-44964423 | None:intergenic | 30.0% |
| AAGTAAGAGAATAATACTGG+TGG | - | chr7_4:44964428-44964447 | None:intergenic | 30.0% | |
| ATAGATGCTGAATCATAATC+AGG | - | chr7_4:44964536-44964555 | None:intergenic | 30.0% | |
| TCAATACTAACAGCATGATA+AGG | - | chr7_4:44964578-44964597 | None:intergenic | 30.0% | |
| GATAATGTATACCACAATGT+TGG | + | chr7_4:44965309-44965328 | Msa1156570:intron | 30.0% | |
| ATCATCTTCAACACTCATAT+AGG | - | chr7_4:44965416-44965435 | None:intergenic | 30.0% | |
| CTATGCTTGAATTTCATTAG+TGG | - | chr7_4:44965475-44965494 | None:intergenic | 30.0% | |
| CACTAATGAAATTCAAGCAT+AGG | + | chr7_4:44965473-44965492 | Msa1156570:intron | 30.0% | |
| TAGCAATATGACTAAGTCAA+AGG | - | chr7_4:44965775-44965794 | None:intergenic | 30.0% | |
| GGCAATAGATGAATGTTATA+AGG | - | chr7_4:44965830-44965849 | None:intergenic | 30.0% | |
| CATCTAAATTAACAAGGTCT+CGG | - | chr7_4:44966000-44966019 | None:intergenic | 30.0% | |
| AGACCTTGTTAATTTAGATG+TGG | + | chr7_4:44966000-44966019 | Msa1156570:intron | 30.0% | |
| TCACCACATCTAAATTAACA+AGG | - | chr7_4:44966006-44966025 | None:intergenic | 30.0% | |
| !! | CACTGAACTTAAAGGTATTT+CGG | - | chr7_4:44966104-44966123 | None:intergenic | 30.0% |
| CTTATCGATCTAAATGACTA+AGG | - | chr7_4:44966137-44966156 | None:intergenic | 30.0% | |
| !!! | TTTTAAGATGTGGAGAAATG+AGG | + | chr7_4:44966262-44966281 | Msa1156570:intron | 30.0% |
| TGATGAATTCAAGAATGACA+TGG | - | chr7_4:44966604-44966623 | None:intergenic | 30.0% | |
| !! | TCTTCTGAAACTACATTGAT+TGG | + | chr7_4:44966790-44966809 | Msa1156570:intron | 30.0% |
| ! | CAACAATTTTTCTTTCCGTT+TGG | - | chr7_4:44966886-44966905 | None:intergenic | 30.0% |
| GGAAAGAAAAATTGTTGACA+TGG | + | chr7_4:44966889-44966908 | Msa1156570:CDS | 30.0% | |
| AGAAAAATTGTTGACATGGA+AGG | + | chr7_4:44966893-44966912 | Msa1156570:CDS | 30.0% | |
| !!! | TGTTTTTTGCTTGATAACCA+AGG | - | chr7_4:44967001-44967020 | None:intergenic | 30.0% |
| AAACACTAGTACTTCCATTT+GGG | + | chr7_4:44967075-44967094 | Msa1156570:CDS | 30.0% | |
| AAAGTTGCAAACCAAATTAG+AGG | - | chr7_4:44967308-44967327 | None:intergenic | 30.0% | |
| !! | CTAATTTGGTTTGCAACTTT+AGG | + | chr7_4:44967308-44967327 | Msa1156570:CDS | 30.0% |
| !! | AATTTGGTTTGCAACTTTAG+GGG | + | chr7_4:44967310-44967329 | Msa1156570:CDS | 30.0% |
| !! | TAATTTTGATGGTTTGTCAG+AGG | + | chr7_4:44967436-44967455 | Msa1156570:CDS | 30.0% |
| ! | ATATGATGGTGATTTAAACG+TGG | + | chr7_4:44967481-44967500 | Msa1156570:three_prime_UTR | 30.0% |
| ! | ATGTGAAAATGTTTTGCCGA+TGG | + | chr7_4:44964091-44964110 | Msa1156570:five_prime_UTR | 35.0% |
| GTATAAAGAAAACGTGCACA+TGG | - | chr7_4:44964139-44964158 | None:intergenic | 35.0% | |
| AATTGCTCTCACAACATTCA+TGG | + | chr7_4:44964337-44964356 | Msa1156570:CDS | 35.0% | |
| TATAAGGCCACAATAAAGCT+TGG | + | chr7_4:44964374-44964393 | Msa1156570:CDS | 35.0% | |
| TATCTCAAACAGTAGACAGA+AGG | + | chr7_4:44964493-44964512 | Msa1156570:intron | 35.0% | |
| ! | ATCATGCTGTTAGTATTGAG+TGG | + | chr7_4:44964579-44964598 | Msa1156570:CDS | 35.0% |
| !!! | TATAGTTTTGACTCGTGGTT+AGG | + | chr7_4:44964805-44964824 | Msa1156570:intron | 35.0% |
| AGAGTTCATCCATATGATGT+AGG | + | chr7_4:44965287-44965306 | Msa1156570:intron | 35.0% | |
| AATGTATACCACAATGTTGG+AGG | + | chr7_4:44965312-44965331 | Msa1156570:intron | 35.0% | |
| ATGTCACCTCTATGAAAGTT+TGG | + | chr7_4:44965434-44965453 | Msa1156570:intron | 35.0% | |
| TGTCACCTCTATGAAAGTTT+GGG | + | chr7_4:44965435-44965454 | Msa1156570:intron | 35.0% | |
| TCGTTCAAAGTTGTTCAATG+CGG | - | chr7_4:44965521-44965540 | None:intergenic | 35.0% | |
| ATTGAACAACTTTGAACGAG+AGG | + | chr7_4:44965522-44965541 | Msa1156570:intron | 35.0% | |
| AATGTGAGTGATGAAATCAC+TGG | + | chr7_4:44965547-44965566 | Msa1156570:intron | 35.0% | |
| !! | TGAAATCACTGGTTCATATG+TGG | + | chr7_4:44965558-44965577 | Msa1156570:intron | 35.0% |
| TAATCTCACAGACATTCTAG+TGG | + | chr7_4:44965601-44965620 | Msa1156570:intron | 35.0% | |
| AATCTCACAGACATTCTAGT+GGG | + | chr7_4:44965602-44965621 | Msa1156570:intron | 35.0% | |
| ! | GTATAGCGTTCCCTTTTATA+TGG | - | chr7_4:44965851-44965870 | None:intergenic | 35.0% |
| GATCTATCCGCTAGATTAAT+TGG | - | chr7_4:44966235-44966254 | None:intergenic | 35.0% | |
| CAACAAAAGACGTTATTTGC+AGG | - | chr7_4:44966311-44966330 | None:intergenic | 35.0% | |
| ACCAACTGAGTTACATTTAC+AGG | + | chr7_4:44966333-44966352 | Msa1156570:intron | 35.0% | |
| TCCTGTAAATGTAACTCAGT+TGG | - | chr7_4:44966337-44966356 | None:intergenic | 35.0% | |
| AGTTTCAGAAGAATATGGCA+TGG | - | chr7_4:44966782-44966801 | None:intergenic | 35.0% | |
| !! | AATGGAAGTACTAGTGTTTG+TGG | - | chr7_4:44967074-44967093 | None:intergenic | 35.0% |
| CAAACACTAGTACTTCCATT+TGG | + | chr7_4:44967074-44967093 | Msa1156570:CDS | 35.0% | |
| AACACTAGTACTTCCATTTG+GGG | + | chr7_4:44967076-44967095 | Msa1156570:CDS | 35.0% | |
| ATAAAGAAAATCTGCAGTCC+AGG | - | chr7_4:44967194-44967213 | None:intergenic | 35.0% | |
| !! | TCAAAGATTGGTGTTGATTG+TGG | + | chr7_4:44967269-44967288 | Msa1156570:CDS | 35.0% |
| TGTCAGTATCCCACAAATAA+GGG | - | chr7_4:44967348-44967367 | None:intergenic | 35.0% | |
| ATGTCAGTATCCCACAAATA+AGG | - | chr7_4:44967349-44967368 | None:intergenic | 35.0% | |
| ! | TACTATTAGCTTACTTGAGC+TGG | + | chr7_4:44967369-44967388 | Msa1156570:CDS | 35.0% |
| TGGGGTTAAACAAGATCCAT+CGG | - | chr7_4:44964110-44964129 | None:intergenic | 40.0% | |
| TAAAGAAAACGTGCACATGG+TGG | - | chr7_4:44964136-44964155 | None:intergenic | 40.0% | |
| GGAAAGTCCTTCTCAGTATA+AGG | + | chr7_4:44964358-44964377 | Msa1156570:CDS | 40.0% | |
| !! | ATTGTGGCCTTATACTGAGA+AGG | - | chr7_4:44964368-44964387 | None:intergenic | 40.0% |
| !! | AGGTAGACCAAGCTTTATTG+TGG | - | chr7_4:44964384-44964403 | None:intergenic | 40.0% |
| ACAATAAAGCTTGGTCTACC+TGG | + | chr7_4:44964383-44964402 | Msa1156570:CDS | 40.0% | |
| CAATAAAGCTTGGTCTACCT+GGG | + | chr7_4:44964384-44964403 | Msa1156570:CDS | 40.0% | |
| AAACTCAACCTCCAACATTG+TGG | - | chr7_4:44965323-44965342 | None:intergenic | 40.0% | |
| AAAGTTGTTCAATGCGGTGA+GGG | - | chr7_4:44965515-44965534 | None:intergenic | 40.0% | |
| ! | ACTGGTTCATATGTGGAATG+AGG | + | chr7_4:44965565-44965584 | Msa1156570:intron | 40.0% |
| ATGTGGAATGAGGTTCATAG+AGG | + | chr7_4:44965575-44965594 | Msa1156570:intron | 40.0% | |
| !! | TGCAAAGGCACTGAACTTAA+AGG | - | chr7_4:44966112-44966131 | None:intergenic | 40.0% |
| TAAATGACTAAGGCGTGCAA+AGG | - | chr7_4:44966127-44966146 | None:intergenic | 40.0% | |
| AAGACGTTATTTGCAGGAGT+CGG | - | chr7_4:44966305-44966324 | None:intergenic | 40.0% | |
| TAGCCAATAAAATCTCAGCC+TGG | + | chr7_4:44966492-44966511 | Msa1156570:intron | 40.0% | |
| AGTAAGGCCAAGTGATACTT+CGG | - | chr7_4:44966960-44966979 | None:intergenic | 40.0% | |
| ACTGACACATACTACCAGTA+AGG | - | chr7_4:44966976-44966995 | None:intergenic | 40.0% | |
| GTAGTATGTGTCAGTTTCCT+TGG | + | chr7_4:44966981-44967000 | Msa1156570:CDS | 40.0% | |
| AGCTCGGGAAAGTAAAAAAG+GGG | - | chr7_4:44967236-44967255 | None:intergenic | 40.0% | |
| CAGCTCGGGAAAGTAAAAAA+GGG | - | chr7_4:44967237-44967256 | None:intergenic | 40.0% | |
| TGTTCAAGCTGCCTCTAATT+TGG | + | chr7_4:44967294-44967313 | Msa1156570:CDS | 40.0% | |
| ACAAATAAGGGAAAGCCCAA+CGG | - | chr7_4:44967336-44967355 | None:intergenic | 40.0% | |
| ! | TTGGGCTTTCCCTTATTTGT+GGG | + | chr7_4:44967336-44967355 | Msa1156570:CDS | 40.0% |
| ! | TATTAGCTTACTTGAGCTGG+AGG | + | chr7_4:44967372-44967391 | Msa1156570:CDS | 40.0% |
| AGCTGGAGGTTTCTATCTAA+AGG | + | chr7_4:44967386-44967405 | Msa1156570:CDS | 40.0% | |
| GCTGGAGGTTTCTATCTAAA+GGG | + | chr7_4:44967387-44967406 | Msa1156570:CDS | 40.0% | |
| ! | GGTTTGTCAGAGGTTTTACA+AGG | + | chr7_4:44967446-44967465 | Msa1156570:CDS | 40.0% |
| ! | TGTCAGAGGTTTTACAAGGA+TGG | + | chr7_4:44967450-44967469 | Msa1156570:CDS | 40.0% |
| ! | GTTTTACAAGGATGGAACTG+AGG | + | chr7_4:44967458-44967477 | Msa1156570:CDS | 40.0% |
| ! | TGATGGTGATTTAAACGTGG+AGG | + | chr7_4:44967484-44967503 | Msa1156570:three_prime_UTR | 40.0% |
| ! | AGAAGCACAATGGGAAACAG+TGG | - | chr7_4:44964257-44964276 | None:intergenic | 45.0% |
| GTGAGAGCAATTTCTCGTGA+AGG | - | chr7_4:44964329-44964348 | None:intergenic | 45.0% | |
| TCAGCTAGATTGCTGTCGTT+CGG | - | chr7_4:44964620-44964639 | None:intergenic | 45.0% | |
| ! | TTTGACTCGTGGTTAGGCTT+AGG | + | chr7_4:44964811-44964830 | Msa1156570:intron | 45.0% |
| GTCTGCCCAAACTTTCATAG+AGG | - | chr7_4:44965443-44965462 | None:intergenic | 45.0% | |
| AAGTTGTTCAATGCGGTGAG+GGG | - | chr7_4:44965514-44965533 | None:intergenic | 45.0% | |
| CAAAGTTGTTCAATGCGGTG+AGG | - | chr7_4:44965516-44965535 | None:intergenic | 45.0% | |
| GATAAGTTACTCGACGTGGT+TGG | - | chr7_4:44966074-44966093 | None:intergenic | 45.0% | |
| CACAGATAAGTTACTCGACG+TGG | - | chr7_4:44966078-44966097 | None:intergenic | 45.0% | |
| CACGTCGAGTAACTTATCTG+TGG | + | chr7_4:44966076-44966095 | Msa1156570:intron | 45.0% | |
| CAATAAAATCTCAGCCTGGC+CGG | + | chr7_4:44966496-44966515 | Msa1156570:intron | 45.0% | |
| ! | CATTCCTCCGAAGTATCACT+TGG | + | chr7_4:44966950-44966969 | Msa1156570:CDS | 45.0% |
| !! | GAAGTATCACTTGGCCTTAC+TGG | + | chr7_4:44966959-44966978 | Msa1156570:CDS | 45.0% |
| !! | GGAAGTACTAGTGTTTGTGG+TGG | - | chr7_4:44967071-44967090 | None:intergenic | 45.0% |
| GCTTCAAATGCTTCCCCAAA+TGG | - | chr7_4:44967092-44967111 | None:intergenic | 45.0% | |
| TTGGTTGTTCCACTACAACC+TGG | + | chr7_4:44967173-44967192 | Msa1156570:CDS | 45.0% | |
| CCAGCTCGGGAAAGTAAAAA+AGG | - | chr7_4:44967238-44967257 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTACTTTCCCGAGC+TGG | + | chr7_4:44967235-44967254 | Msa1156570:CDS | 45.0% |
| GTTCGCAAGGCTTCAAAGAT+TGG | + | chr7_4:44967257-44967276 | Msa1156570:CDS | 45.0% | |
| ! | GTTGGGCTTTCCCTTATTTG+TGG | + | chr7_4:44967335-44967354 | Msa1156570:CDS | 45.0% |
| GGATGGAACTGAGGATATGA+TGG | + | chr7_4:44967467-44967486 | Msa1156570:exon | 45.0% | |
| TTGCTGTCGTTCGGGTAAGA+AGG | - | chr7_4:44964611-44964630 | None:intergenic | 50.0% | |
| CAGCTAGATTGCTGTCGTTC+GGG | - | chr7_4:44964619-44964638 | None:intergenic | 50.0% | |
| GTGGTTAGGCTTAGGAGTCA+AGG | + | chr7_4:44964819-44964838 | Msa1156570:intron | 50.0% | |
| GGCTTAGGAGTCAAGGAATG+TGG | + | chr7_4:44964826-44964845 | Msa1156570:intron | 50.0% | |
| AGTTGTTCAATGCGGTGAGG+GGG | - | chr7_4:44965513-44965532 | None:intergenic | 50.0% | |
| ! | CGGCCAGGCTGAGATTTTAT+TGG | - | chr7_4:44966498-44966517 | None:intergenic | 50.0% |
| AAGGCCAAGTGATACTTCGG+AGG | - | chr7_4:44966957-44966976 | None:intergenic | 50.0% | |
| ATCTGCAGTCCAGGTTGTAG+TGG | - | chr7_4:44967185-44967204 | None:intergenic | 50.0% | |
| ! | TTTGCAACTTTAGGGGCCGT+TGG | + | chr7_4:44967317-44967336 | Msa1156570:CDS | 50.0% |
| ! | TTGCAACTTTAGGGGCCGTT+GGG | + | chr7_4:44967318-44967337 | Msa1156570:CDS | 50.0% |
| AACGTGCACATGGTGGCAGT+GGG | - | chr7_4:44964129-44964148 | None:intergenic | 55.0% | |
| AAACGTGCACATGGTGGCAG+TGG | - | chr7_4:44964130-44964149 | None:intergenic | 55.0% | |
| ! | CAATGCGGTGAGGGGGATTT+TGG | - | chr7_4:44965506-44965525 | None:intergenic | 55.0% |
| AGGAGTCGGAGTTCGAACTC+TGG | - | chr7_4:44966291-44966310 | None:intergenic | 55.0% | |
| TCAGCCTGGCCGGAAATCAT+GGG | + | chr7_4:44966506-44966525 | Msa1156570:intron | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | - | chr7_4:44966518-44966537 | None:intergenic | 55.0% | |
| TGAAGCCTTGCGAACCAGCT+CGG | - | chr7_4:44967252-44967271 | None:intergenic | 55.0% | |
| ACGTGCACATGGTGGCAGTG+GGG | - | chr7_4:44964128-44964147 | None:intergenic | 60.0% | |
| CTCAGCCTGGCCGGAAATCA+TGG | + | chr7_4:44966505-44966524 | Msa1156570:intron | 60.0% | |
| CAGCCTGGCCGGAAATCATG+GGG | + | chr7_4:44966507-44966526 | Msa1156570:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | + | chr7_4:44966514-44966533 | Msa1156570:intron | 60.0% | |
| !! | CTTTCCCGAGCTGGTTCGCA+AGG | + | chr7_4:44967244-44967263 | Msa1156570:CDS | 60.0% |
| GAAGCCTTGCGAACCAGCTC+GGG | - | chr7_4:44967251-44967270 | None:intergenic | 60.0% | |
| CCACCCCATGATTTCCGGCC+AGG | - | chr7_4:44966513-44966532 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | + | chr7_4:44966510-44966529 | Msa1156570:intron | 65.0% | |
| GGCCGGAAATCATGGGGTGG+TGG | + | chr7_4:44966513-44966532 | Msa1156570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 44964067 | 44967675 | 44964067 | ID=Msa1156570;Name=Msa1156570 |
| chr7_4 | mRNA | 44964067 | 44967675 | 44964067 | ID=Msa1156570-mRNA-1;Parent=Msa1156570;Name=Msa1156570-mRNA-1;_AED=0.17;_eAED=0.17;_QI=241|1|1|1|1|1|3|197|300 |
| chr7_4 | exon | 44964067 | 44964405 | 44964067 | ID=Msa1156570-mRNA-1:exon:11633;Parent=Msa1156570-mRNA-1 |
| chr7_4 | exon | 44964505 | 44964664 | 44964505 | ID=Msa1156570-mRNA-1:exon:11634;Parent=Msa1156570-mRNA-1 |
| chr7_4 | exon | 44966834 | 44967675 | 44966834 | ID=Msa1156570-mRNA-1:exon:11635;Parent=Msa1156570-mRNA-1 |
| chr7_4 | five_prime_UTR | 44964067 | 44964307 | 44964067 | ID=Msa1156570-mRNA-1:five_prime_utr;Parent=Msa1156570-mRNA-1 |
| chr7_4 | CDS | 44964308 | 44964405 | 44964308 | ID=Msa1156570-mRNA-1:cds;Parent=Msa1156570-mRNA-1 |
| chr7_4 | CDS | 44964505 | 44964664 | 44964505 | ID=Msa1156570-mRNA-1:cds;Parent=Msa1156570-mRNA-1 |
| chr7_4 | CDS | 44966834 | 44967478 | 44966834 | ID=Msa1156570-mRNA-1:cds;Parent=Msa1156570-mRNA-1 |
| chr7_4 | three_prime_UTR | 44967479 | 44967675 | 44967479 | ID=Msa1156570-mRNA-1:three_prime_utr;Parent=Msa1156570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
