AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072970 MtrunA17_Chr7g0270131 98.374 615 7 2 1 614 1 613 0.0 1230
Msa1072970 MtrunA17_Chr2g0277821 44.991 569 279 8 69 620 341 892 1.18e-143 445
Msa1072970 MtrunA17_Chr2g0330401 49.652 431 213 4 180 608 42 470 1.69e-139 416
Msa1072970 MtrunA17_Chr4g0058591 49.315 365 183 2 191 554 160 523 4.59e-116 356
Msa1072970 MtrunA17_Chr6g0449911 44.059 404 218 6 214 614 146 544 1.73e-107 340
Msa1072970 MtrunA17_Chr2g0293631 43.961 414 218 7 210 614 467 875 1.54e-105 345
Msa1072970 MtrunA17_Chr3g0107851 40.046 437 242 7 166 586 45 477 1.23e-104 328
Msa1072970 MtrunA17_Chr4g0076491 40.783 434 234 6 195 608 249 679 2.57e-103 328
Msa1072970 MtrunA17_Chr6g0449741 40.783 434 232 7 195 608 211 639 8.44e-102 323
Msa1072970 MtrunA17_Chr3g0121351 39.400 467 240 9 171 614 94 540 2.31e-96 308
Msa1072970 MtrunA17_Chr1g0176041 40.980 449 236 9 190 619 113 551 3.24e-96 307
Msa1072970 MtrunA17_Chr1g0200181 44.416 394 206 6 203 587 115 504 1.28e-94 303
Msa1072970 MtrunA17_Chr5g0409981 43.250 400 216 7 223 615 94 489 1.63e-94 300
Msa1072970 MtrunA17_Chr1g0157691 44.304 395 205 7 203 587 117 506 1.94e-93 300
Msa1072970 MtrunA17_Chr4g0063551 40.964 415 225 6 216 612 123 535 6.27e-92 298
Msa1072970 MtrunA17_Chr7g0236841 36.740 362 222 5 229 589 6 361 2.30e-71 237
Msa1072970 MtrunA17_Chr6g0483491 36.464 362 223 5 229 589 6 361 2.99e-71 236
Msa1072970 MtrunA17_Chr7g0263771 35.222 406 250 7 214 614 110 507 2.98e-70 239
Msa1072970 MtrunA17_Chr3g0095031 36.512 367 220 6 224 588 88 443 3.56e-66 226
Msa1072970 MtrunA17_Chr4g0040761 37.784 352 212 6 234 583 20 366 1.21e-65 229
Msa1072970 MtrunA17_Chr3g0098121 36.387 382 229 6 233 604 152 529 7.71e-65 227
Msa1072970 MtrunA17_Chr2g0310581 36.512 367 219 7 233 593 53 411 9.28e-64 219
Msa1072970 MtrunA17_Chr2g0297261 33.705 359 221 6 229 582 30 376 1.25e-63 215
Msa1072970 MtrunA17_Chr2g0300291 36.292 383 229 7 233 604 141 519 1.18e-62 221
Msa1072970 MtrunA17_Chr2g0329931 34.530 362 230 4 232 593 40 394 1.54e-62 213
Msa1072970 MtrunA17_Chr5g0442191 34.794 388 236 7 214 588 51 434 1.64e-62 217
Msa1072970 MtrunA17_Chr1g0193491 38.547 358 207 7 238 588 119 470 2.19e-62 218
Msa1072970 MtrunA17_Chr7g0271121 37.815 357 209 7 239 588 111 461 1.03e-61 218
Msa1072970 MtrunA17_Chr8g0342861 34.072 361 231 4 233 593 41 394 2.67e-61 209
Msa1072970 MtrunA17_Chr4g0070981 34.930 355 222 6 233 586 41 387 2.20e-60 207
Msa1072970 MtrunA17_Chr2g0299681 34.254 362 229 6 233 593 41 394 4.19e-60 206
Msa1072970 MtrunA17_Chr6g0461751 30.282 426 280 8 193 610 102 518 9.87e-59 206
Msa1072970 MtrunA17_Chr6g0475251 33.854 384 216 12 222 590 104 464 1.44e-54 197
Msa1072970 MtrunA17_Chr8g0347151 36.388 371 218 11 234 589 202 569 5.51e-53 192
Msa1072970 MtrunA17_Chr7g0247221 31.373 357 233 7 234 589 144 489 8.46e-52 186
Msa1072970 MtrunA17_Chr8g0347161 35.135 370 224 11 234 589 103 470 1.07e-51 187
Msa1072970 MtrunA17_Chr7g0247181 31.092 357 234 6 234 589 141 486 1.65e-51 185
Msa1072970 MtrunA17_Chr7g0247191 30.812 357 235 6 234 589 151 496 5.33e-51 184
Msa1072970 MtrunA17_Chr4g0062301 34.286 350 221 6 246 589 110 456 7.61e-51 185
Msa1072970 MtrunA17_Chr8g0347171 34.595 370 226 12 234 589 161 528 1.41e-50 185
Msa1072970 MtrunA17_Chr1g0192021 30.216 417 242 8 232 603 25 437 4.62e-50 183
Msa1072970 MtrunA17_Chr8g0386451 34.400 375 228 11 234 593 289 660 8.52e-50 185
Msa1072970 MtrunA17_Chr3g0114081 32.609 368 227 7 243 590 26 392 4.42e-49 180
Msa1072970 MtrunA17_Chr7g0236831 32.564 433 210 14 234 591 164 589 2.33e-48 181
Msa1072970 MtrunA17_Chr4g0003441 31.564 358 225 10 234 583 109 454 2.96e-48 176
Msa1072970 MtrunA17_Chr2g0307471 31.593 364 241 5 231 589 89 449 5.08e-48 177
Msa1072970 MtrunA17_Chr5g0443991 37.578 322 190 8 256 570 99 416 8.15e-48 179
Msa1072970 MtrunA17_Chr1g0204391 32.329 365 207 10 247 581 58 412 2.21e-47 175
Msa1072970 MtrunA17_Chr6g0466611 30.688 378 245 7 231 593 140 515 3.26e-47 177
Msa1072970 MtrunA17_Chr4g0034411 36.137 321 195 8 256 570 99 415 7.82e-46 173
Msa1072970 MtrunA17_Chr4g0029191 29.808 416 217 13 233 574 44 458 8.03e-46 171
Msa1072970 MtrunA17_Chr2g0301281 29.327 416 219 14 233 574 41 455 1.07e-44 168
Msa1072970 MtrunA17_Chr2g0309551 27.515 487 272 13 160 586 49 514 9.20e-42 159
Msa1072970 MtrunA17_Chr1g0149251 30.503 318 207 8 271 583 2 310 7.17e-41 152
Msa1072970 MtrunA17_Chr1g0179761 29.708 377 231 12 233 582 80 449 1.09e-39 152
Msa1072970 MtrunA17_Chr5g0429221 27.586 348 239 9 231 572 1 341 5.28e-38 145
Msa1072970 MtrunA17_Chr3g0145781 26.598 391 259 8 231 594 130 519 2.30e-36 143
Msa1072970 MtrunA17_Chr4g0039471 36.683 199 118 3 233 428 223 416 4.16e-30 123
Msa1072970 MtrunA17_Chr4g0039471 31.500 200 84 4 233 427 2 153 7.18e-20 92.4
Msa1072970 MtrunA17_Chr8g0349951 36.943 157 94 2 229 384 6 158 9.23e-29 112
Msa1072970 MtrunA17_Chr1g0169331 25.995 377 229 8 250 587 8 373 1.48e-28 118
Msa1072970 MtrunA17_Chr4g0062321 32.068 237 150 6 314 546 4 233 1.11e-24 103
Msa1072970 MtrunA17_Chr5g0434301 23.604 394 221 8 270 594 70 452 4.84e-24 106
Msa1072970 MtrunA17_Chr4g0004301 23.350 394 222 8 270 594 70 452 3.44e-23 103
Msa1072970 MtrunA17_Chr8g0342851 26.023 342 200 13 262 593 2 300 1.48e-22 99.0
Msa1072970 MtrunA17_Chr4g0074521 27.451 408 242 17 227 593 76 470 4.00e-21 97.1
Msa1072970 MtrunA17_Chr3g0137891 33.529 170 103 5 271 436 2 165 3.46e-18 84.3
Msa1072970 MtrunA17_Chr2g0300871 25.150 334 219 9 251 570 39 355 4.51e-18 88.6
Msa1072970 MtrunA17_Chr4g0025131 32.370 173 109 4 223 392 46 213 4.36e-17 82.0
Msa1072970 MtrunA17_Chr3g0137901 31.034 116 79 1 468 583 32 146 3.74e-15 73.9
Msa1072970 MtrunA17_Chr4g0025141 27.273 187 122 4 412 585 15 200 4.65e-14 72.4
Msa1072970 MtrunA17_Chr0c30g0494091 30.769 208 127 7 227 422 76 278 2.39e-13 72.4
Msa1072970 MtrunA17_Chr4g0058601 50.000 70 34 1 542 611 9 77 2.78e-13 67.0
Msa1072970 MtrunA17_Chr1g0171481 23.380 355 252 12 268 611 175 520 7.13e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072970 AT2G47330.1 83.550 614 97 4 1 614 1 610 0.0 1042
Msa1072970 AT1G20920.2 43.448 580 302 9 52 617 10 577 8.34e-146 443
Msa1072970 AT5G63120.2 51.781 421 200 3 192 611 125 543 1.20e-143 430
Msa1072970 AT1G20920.4 44.286 560 290 8 68 617 368 915 2.36e-142 443
Msa1072970 AT1G20920.6 44.286 560 290 8 68 617 368 915 2.36e-142 443
Msa1072970 AT1G20920.3 44.286 560 290 8 68 617 368 915 2.36e-142 443
Msa1072970 AT1G20920.7 44.286 560 290 8 68 617 368 915 2.36e-142 443
Msa1072970 AT1G20920.5 44.286 560 290 8 68 617 368 915 2.36e-142 443
Msa1072970 AT1G20920.1 44.286 560 290 8 68 617 368 915 2.36e-142 443
Msa1072970 AT1G55150.1 48.951 429 216 3 191 618 58 484 1.29e-139 416
Msa1072970 AT1G55150.2 48.951 429 216 3 191 618 83 509 4.43e-139 416
Msa1072970 AT3G09620.1 43.784 555 265 9 68 616 239 752 8.18e-131 409
Msa1072970 AT3G09620.2 43.784 555 265 9 68 616 240 753 1.06e-130 408
Msa1072970 AT5G63120.1 51.261 357 172 2 192 547 125 480 2.07e-120 366
Msa1072970 AT5G63120.3 51.852 351 167 2 192 541 125 474 4.40e-120 365
Msa1072970 AT5G63120.4 51.852 351 167 2 192 541 125 474 4.40e-120 365
Msa1072970 AT5G63120.5 51.852 351 167 2 192 541 125 474 4.40e-120 365
Msa1072970 AT5G14610.6 42.308 416 234 5 201 614 130 541 8.09e-106 334
Msa1072970 AT5G14610.2 42.308 416 234 5 201 614 130 541 9.64e-106 333
Msa1072970 AT3G01540.1 42.105 418 232 7 201 614 127 538 1.01e-105 333
Msa1072970 AT3G01540.4 42.105 418 232 7 201 614 127 538 1.06e-105 333
Msa1072970 AT3G01540.2 42.105 418 232 7 201 614 127 538 1.06e-105 333
Msa1072970 AT3G01540.3 42.105 418 232 7 201 614 127 538 1.06e-105 333
Msa1072970 AT5G14610.5 42.308 416 234 5 201 614 138 549 1.66e-105 333
Msa1072970 AT3G06480.1 42.689 424 233 7 194 614 399 815 5.14e-105 342
Msa1072970 AT2G33730.1 41.514 436 232 6 206 621 287 719 5.56e-104 332
Msa1072970 AT2G42520.2 42.478 452 236 7 182 614 108 554 5.73e-103 326
Msa1072970 AT2G42520.1 42.478 452 236 7 182 614 108 554 5.73e-103 326
Msa1072970 AT2G42520.3 42.478 452 236 7 182 614 108 554 5.73e-103 326
Msa1072970 AT3G58510.1 40.940 447 247 7 182 614 101 544 2.95e-100 318
Msa1072970 AT3G58510.3 40.940 447 247 7 182 614 101 544 2.95e-100 318
Msa1072970 AT3G58510.2 40.940 447 247 7 182 614 101 544 2.95e-100 318
Msa1072970 AT5G14610.7 44.262 366 198 5 251 614 49 410 1.60e-97 308
Msa1072970 AT5G14610.3 44.262 366 198 5 251 614 49 410 1.60e-97 308
Msa1072970 AT3G58570.1 40.222 450 248 9 182 614 96 541 4.71e-97 311
Msa1072970 AT5G14610.1 43.784 370 202 5 247 614 244 609 1.02e-96 312
Msa1072970 AT5G51280.1 43.544 395 208 6 203 587 117 506 1.15e-93 300
Msa1072970 AT4G33370.1 39.333 450 258 7 172 611 38 482 3.35e-91 293
Msa1072970 AT1G31970.1 41.985 393 216 7 231 615 115 503 9.95e-90 288
Msa1072970 AT5G14610.4 42.693 349 195 4 201 547 138 483 3.15e-88 283
Msa1072970 AT3G06480.2 43.213 361 194 7 194 550 399 752 7.72e-87 287
Msa1072970 AT1G28180.1 44.785 326 171 5 262 583 3 323 1.32e-82 265
Msa1072970 AT3G09720.2 34.568 405 252 7 215 614 120 516 4.75e-71 239
Msa1072970 AT3G09720.1 34.568 405 252 7 215 614 120 516 4.75e-71 239
Msa1072970 AT5G60990.1 34.688 369 226 6 231 589 8 371 3.57e-68 229
Msa1072970 AT1G16280.1 37.293 362 213 7 234 589 60 413 4.79e-66 224
Msa1072970 AT1G77030.1 37.709 358 204 8 234 583 30 376 4.49e-64 226
Msa1072970 AT3G13920.1 35.278 360 220 5 232 588 39 388 6.44e-64 217
Msa1072970 AT3G22330.1 35.574 357 224 5 234 588 106 458 9.19e-64 221
Msa1072970 AT3G13920.3 35.278 360 220 5 232 588 29 378 9.54e-64 216
Msa1072970 AT3G02065.3 31.871 433 272 9 196 616 75 496 1.44e-63 218
Msa1072970 AT3G02065.2 31.871 433 272 9 196 616 75 496 1.44e-63 218
Msa1072970 AT3G13920.5 35.278 360 220 5 232 588 43 392 1.99e-63 216
Msa1072970 AT3G13920.2 35.278 360 220 5 232 588 39 388 2.07e-63 215
Msa1072970 AT3G19760.1 32.213 357 229 5 229 582 32 378 4.14e-63 214
Msa1072970 AT1G54270.1 35.278 360 220 5 232 588 39 388 8.75e-63 214
Msa1072970 AT4G16630.1 36.544 353 219 4 233 583 168 517 1.55e-62 221
Msa1072970 AT3G22310.2 36.415 357 217 7 236 588 120 470 3.19e-62 217
Msa1072970 AT3G13920.4 36.257 342 205 5 250 588 52 383 3.50e-62 212
Msa1072970 AT3G22310.1 36.415 357 217 7 236 588 120 470 4.25e-62 217
Msa1072970 AT1G54270.2 36.257 342 205 5 250 588 52 383 4.63e-61 209
Msa1072970 AT5G26742.1 38.462 351 202 7 246 588 116 460 6.08e-61 216
Msa1072970 AT5G26742.2 38.462 351 202 7 246 588 116 460 6.16e-61 216
Msa1072970 AT1G51380.1 33.426 359 222 6 229 582 19 365 6.49e-61 208
Msa1072970 AT1G72730.1 33.241 361 234 4 233 593 42 395 1.40e-59 205
Msa1072970 AT5G26742.3 39.394 330 186 7 267 588 44 367 1.97e-59 211
Msa1072970 AT4G00660.1 31.653 357 232 7 234 589 133 478 4.97e-54 192
Msa1072970 AT4G00660.2 31.653 357 232 7 234 589 133 478 4.97e-54 192
Msa1072970 AT5G65900.1 34.254 362 231 6 232 589 154 512 6.57e-54 195
Msa1072970 AT3G18600.1 33.889 360 232 5 233 589 90 446 3.38e-53 192
Msa1072970 AT5G62190.1 36.103 349 199 9 247 581 111 449 5.76e-52 190
Msa1072970 AT5G63630.1 33.155 374 234 8 234 593 56 427 1.86e-49 180
Msa1072970 AT2G45810.1 30.337 356 238 7 234 589 156 501 2.31e-49 180
Msa1072970 AT3G61240.2 29.494 356 241 6 234 589 126 471 3.81e-49 179
Msa1072970 AT3G61240.1 29.494 356 241 6 234 589 126 471 3.81e-49 179
Msa1072970 AT5G63630.2 33.155 374 234 8 234 593 250 621 5.71e-49 182
Msa1072970 AT3G02065.1 30.601 366 236 7 261 616 2 359 7.94e-49 175
Msa1072970 AT3G53110.1 31.781 365 228 8 234 582 93 452 1.86e-48 177
Msa1072970 AT5G08610.1 33.693 371 228 11 234 589 384 751 4.92e-48 181
Msa1072970 AT5G11170.1 31.268 355 228 9 234 582 48 392 1.10e-47 173
Msa1072970 AT5G11200.1 31.268 355 228 9 234 582 48 392 1.10e-47 173
Msa1072970 AT4G34910.1 33.248 391 204 8 232 571 46 430 1.16e-47 177
Msa1072970 AT4G09730.1 32.208 385 234 10 229 593 109 486 9.25e-47 175
Msa1072970 AT5G08620.1 33.243 370 231 10 234 589 82 449 4.46e-46 172
Msa1072970 AT1G63250.1 32.626 377 237 9 232 593 328 702 1.24e-45 173
Msa1072970 AT2G07750.1 32.626 377 237 9 232 593 375 749 1.26e-45 174
Msa1072970 AT5G54910.1 35.260 346 214 8 231 570 70 411 1.60e-45 172
Msa1072970 AT5G05450.1 32.782 363 225 8 243 587 27 388 1.27e-44 168
Msa1072970 AT1G71370.1 33.241 361 222 7 243 590 27 381 1.74e-44 167
Msa1072970 AT2G40700.1 30.159 441 222 15 233 593 31 465 3.89e-44 167
Msa1072970 AT1G12770.2 29.000 400 228 8 232 577 110 507 5.52e-43 163
Msa1072970 AT1G12770.1 29.000 400 228 8 232 577 110 507 5.52e-43 163
Msa1072970 AT5G11200.3 28.499 393 230 10 234 582 48 433 9.88e-43 160
Msa1072970 AT3G16840.2 30.676 414 219 11 241 587 200 612 2.59e-41 161
Msa1072970 AT3G16840.1 30.676 414 219 11 241 587 199 611 2.72e-41 160
Msa1072970 AT5G11200.2 27.494 411 229 12 234 582 48 451 5.52e-40 153
Msa1072970 AT5G11170.2 31.447 318 202 9 271 582 2 309 8.25e-40 149
Msa1072970 AT3G06980.1 27.229 415 269 10 209 594 351 761 8.60e-37 147
Msa1072970 AT1G71280.2 33.225 307 173 7 243 543 28 308 2.36e-35 136
Msa1072970 AT1G71280.1 32.704 318 182 7 243 554 28 319 6.78e-35 138
Msa1072970 AT1G51380.2 32.258 248 155 4 229 474 19 255 3.58e-32 126
Msa1072970 AT1G51380.4 33.645 214 133 3 229 440 19 225 4.63e-31 123
Msa1072970 AT1G51380.3 33.645 214 133 3 229 440 19 225 7.84e-31 123
Msa1072970 AT1G28180.2 49.138 116 56 1 262 374 3 118 2.27e-29 113
Msa1072970 AT4G15850.1 25.561 446 253 12 222 594 15 454 2.68e-26 113
Msa1072970 AT5G19210.2 28.058 417 236 17 226 596 68 466 8.25e-25 108
Msa1072970 AT1G59990.1 26.383 235 139 8 233 449 81 299 6.73e-17 84.7
Msa1072970 AT1G59990.2 26.383 235 139 8 233 449 81 299 7.16e-17 84.7
Msa1072970 AT2G28600.1 26.087 322 208 12 305 613 196 500 1.80e-14 77.0

Find 165 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTACCGGTTGTGCTTTC+TGG 0.101108 7_2:-70288336 Msa1072970:CDS
TTGAGGGCGAAGAAGGATTT+AGG 0.143289 7_2:-70289231 Msa1072970:CDS
TGAGAAATTGCCGTGGCTTC+TGG 0.210686 7_2:-70287737 Msa1072970:CDS
CCTTTGATTATTGTTGGTTT+TGG 0.214576 7_2:-70287192 Msa1072970:three_prime_UTR
TGAGGGAGATAATGGAATTT+AGG 0.250084 7_2:+70289706 None:intergenic
AGTTTGGCTATTCGGGTATC+AGG 0.250256 7_2:-70288471 Msa1072970:CDS
CTTTGATATTGCTAAAGATA+TGG 0.286650 7_2:-70287467 Msa1072970:CDS
CGTATCCCTTTGATTATTGT+TGG 0.286917 7_2:-70287198 Msa1072970:three_prime_UTR
ATAAAATTTGAGGGAGATAA+TGG 0.287590 7_2:+70289698 None:intergenic
ATATGCTTTAGCAAATTTCT+TGG 0.299619 7_2:+70288146 None:intergenic
TGGGTTTGCTCCACAAATTA+TGG 0.309744 7_2:-70288409 Msa1072970:CDS
CCTTCCTCCTTCTGAAGTTC+AGG 0.311889 7_2:+70288228 None:intergenic
GTTGTTTGATTGTTCTTCTC+TGG 0.315342 7_2:+70289428 None:intergenic
TAGATATAAAGATGATTTAG+AGG 0.320038 7_2:-70289274 Msa1072970:CDS
ATAGGAAGAGTTTGGCTATT+CGG 0.322771 7_2:-70288479 Msa1072970:CDS
TCCACTTTCTCCTTCGGCTT+CGG 0.327604 7_2:+70289300 None:intergenic
ATCACCTTGATCAATCATTT+CGG 0.328986 7_2:+70287705 None:intergenic
GATAGAAGTTATATATCTAT+AGG 0.329819 7_2:-70287002 Msa1072970:three_prime_UTR
TATACAATGCCAAGCTTTAC+CGG 0.334510 7_2:-70288349 Msa1072970:CDS
TAGGAAGAGTTTGGCTATTC+GGG 0.336769 7_2:-70288478 Msa1072970:CDS
TCACCTTGATCAATCATTTC+GGG 0.344876 7_2:+70287706 None:intergenic
AAGAAATTTGCTAAAGCATA+TGG 0.357035 7_2:-70288144 Msa1072970:CDS
CTATCTTCCACTTTCTCCTT+CGG 0.357308 7_2:+70289294 None:intergenic
TGAGGGCGAAGAAGGATTTA+GGG 0.361115 7_2:-70289230 Msa1072970:CDS
CGATCCATTAGATGCATTCA+TGG 0.362487 7_2:-70289358 Msa1072970:CDS
CCTTCCATGAATGCATCTAA+TGG 0.370763 7_2:+70289354 None:intergenic
GAGGAGTCACCTTCAATATC+AGG 0.374150 7_2:-70289006 Msa1072970:intron
AGCACGGTTTGCTGGTGAAT+TGG 0.382223 7_2:-70287362 Msa1072970:CDS
TTCTTCTTGTCAAGAACAAT+AGG 0.387443 7_2:+70289096 None:intergenic
ATACGTGTCTCTGCTGTCTA+TGG 0.389174 7_2:-70288120 Msa1072970:CDS
TTTATAGCACCCATAATTTG+TGG 0.390337 7_2:+70288399 None:intergenic
AGCATGTCTATCAATCTTCC+AGG 0.392561 7_2:+70288033 None:intergenic
AGCAAGATGTAACTGATTAT+AGG 0.393214 7_2:-70288497 Msa1072970:CDS
ATCGTGTGCAAGCTCAAGTT+AGG 0.394769 7_2:-70289673 Msa1072970:five_prime_UTR
AAGAGCAAGGTTTGGCGGTC+CGG 0.397692 7_2:+70287895 None:intergenic
GGCATAGCGAAAACTGGTTC+TGG 0.399093 7_2:-70288300 Msa1072970:CDS
GCTTCGAAATTTCACTAAGA+AGG 0.405131 7_2:+70289643 None:intergenic
GAATGTGTCCACGGAGTTGA+TGG 0.406543 7_2:-70287314 Msa1072970:CDS
GGATGAAATTGAAGCACAAT+TGG 0.408212 7_2:-70287650 Msa1072970:CDS
GCTGATCGAATGTTTGATCT+TGG 0.409409 7_2:-70287958 Msa1072970:CDS
ATCATTGGCATAGCGAAAAC+TGG 0.412683 7_2:-70288306 Msa1072970:CDS
AAGTTCGGATTCGAAGGTTT+CGG 0.413016 7_2:-70289585 Msa1072970:CDS
TCTCCCACTGTCACTCTGAT+AGG 0.413022 7_2:+70287817 None:intergenic
GGGTTTGCTCCACAAATTAT+GGG 0.419490 7_2:-70288408 Msa1072970:CDS
AACTGATTATAGGAAGAGTT+TGG 0.423334 7_2:-70288487 Msa1072970:CDS
CAGAAGGAGGAAGGTCCTAT+AGG 0.424404 7_2:-70288219 Msa1072970:CDS
GTTCATCGCATTGGAAGAAC+AGG 0.434588 7_2:-70287436 Msa1072970:CDS
TCCTATGATCGTGCATATCA+TGG 0.445806 7_2:-70288256 Msa1072970:CDS
TTGCAGAAAAGAGCAAGGTT+TGG 0.450948 7_2:+70287887 None:intergenic
GTATGATCAAGAGGAGCAAT+AGG 0.454941 7_2:+70289066 None:intergenic
GCTGCTAAAGCCGTGGATGC+TGG 0.457028 7_2:-70289147 Msa1072970:CDS
TCCATGATATGCACGATCAT+AGG 0.458040 7_2:+70288255 None:intergenic
AAGGTTAGTTTCTAAGAAGC+TGG 0.458633 7_2:-70287042 Msa1072970:three_prime_UTR
GTTAATAGCTTAGTTGCTGC+TGG 0.458763 7_2:-70287340 Msa1072970:CDS
TATCTGATGTGCCAATTCTC+TGG 0.460585 7_2:+70288179 None:intergenic
TTCTCCTTCGGCTTCGGTGG+CGG 0.461021 7_2:+70289306 None:intergenic
TTATATATTAATGTATTCAA+TGG 0.463081 7_2:-70287070 Msa1072970:three_prime_UTR
ATGTGCACCTACCAGAGAAT+TGG 0.464889 7_2:-70288190 Msa1072970:CDS
GTTAAATTACCTGATATTGA+AGG 0.475683 7_2:+70288997 None:intergenic
TATATCTATAGGTTTGCTGT+TGG 0.477022 7_2:-70286991 None:intergenic
GGTGCACATATCACTCCTAT+AGG 0.477608 7_2:+70288204 None:intergenic
CACACGATAAATAAAATTTG+AGG 0.479547 7_2:+70289688 None:intergenic
TGCTGCCCTGCATGGTGATA+AGG 0.489958 7_2:-70287608 Msa1072970:CDS
ATTGGAAGAACAGGCCGTGC+TGG 0.490716 7_2:-70287427 Msa1072970:CDS
GAGATGTCGAAGAGAAAGTT+CGG 0.490965 7_2:-70289600 Msa1072970:CDS
ACACGATAAATAAAATTTGA+GGG 0.499452 7_2:+70289689 None:intergenic
TTGGATTTGAGCCGCAAGTA+AGG 0.501136 7_2:-70287939 Msa1072970:CDS
GTTGATGGATCTTGCTATGA+AGG 0.502001 7_2:-70287299 Msa1072970:CDS
TTGAGATCGTTCGAAACTAT+AGG 0.506823 7_2:+70289545 None:intergenic
TCTCTACCAGAAAGCACAAC+CGG 0.508638 7_2:+70288330 None:intergenic
TTTAGGGTTGACGTTGGCGT+CGG 0.513585 7_2:-70289214 Msa1072970:CDS
GCGTCGGATGCGTTGCATGC+TGG 0.516063 7_2:-70289198 Msa1072970:CDS
GAGATAGTTGTTGCTACGCC+TGG 0.517266 7_2:-70288051 Msa1072970:CDS
CTTTCTGGTAGAGATATCAT+TGG 0.519087 7_2:-70288321 Msa1072970:CDS
CATCGTACTCGATGTTATCA+AGG 0.519589 7_2:+70289457 None:intergenic
GACAGTGGGAGAGGTGGGGA+TGG 0.524042 7_2:-70287806 Msa1072970:CDS
GACATGCATGTTCATCGCAT+TGG 0.527240 7_2:-70287445 Msa1072970:CDS
AATACACGAGGAGATGAAAT+CGG 0.527640 7_2:-70289331 Msa1072970:CDS
GCAAAGTCGAAAAGTTAGCC+AGG 0.529230 7_2:-70287855 Msa1072970:CDS
ATTGATCCTTATCACCATGC+AGG 0.531053 7_2:+70287602 None:intergenic
TTTGGAGCTATGGGTAGTAG+TGG 0.533197 7_2:+70289765 None:intergenic
TATCAGAGTGACAGTGGGAG+AGG 0.534863 7_2:-70287815 Msa1072970:CDS
CAAAACCAACAATAATCAAA+GGG 0.537060 7_2:+70287193 None:intergenic
TAAGGATCAATCTTCTCGTA+TGG 0.538960 7_2:-70287590 Msa1072970:CDS
CAGAAAAGAGCAAGGTTTGG+CGG 0.539484 7_2:+70287890 None:intergenic
AGAGTGACAGTGGGAGAGGT+GGG 0.542580 7_2:-70287811 Msa1072970:CDS
AAAGCACAACCGGTAAAGCT+TGG 0.543465 7_2:+70288340 None:intergenic
GATGAAATTGAAGCACAATT+GGG 0.543605 7_2:-70287649 Msa1072970:CDS
AAGAGAAAGTTCGGATTCGA+AGG 0.543644 7_2:-70289591 Msa1072970:CDS
ACTTTCTCCTTCGGCTTCGG+TGG 0.546367 7_2:+70289303 None:intergenic
ACCGAAGCCGAAGGAGAAAG+TGG 0.547284 7_2:-70289301 Msa1072970:CDS
ATCAATCAAACCAGCATCCA+CGG 0.550510 7_2:+70289137 None:intergenic
TCGTGTGCAAGCTCAAGTTA+GGG 0.551061 7_2:-70289672 Msa1072970:five_prime_UTR
GATGATAACGCTGGTGGTGG+TGG 0.551358 7_2:-70289399 Msa1072970:CDS
TTACCCGAAATGATTGATCA+AGG 0.552029 7_2:-70287709 Msa1072970:CDS
AATGTATTCAATGGTGGACA+AGG 0.553869 7_2:-70287061 Msa1072970:three_prime_UTR
CGTTGTCTTCGAAATTGTCG+TGG 0.555230 7_2:+70289481 None:intergenic
CACTGTCACTCTGATAGGAT+CGG 0.557327 7_2:+70287822 None:intergenic
AATGCTCAGAGCAACTTACC+TGG 0.557941 7_2:-70287992 Msa1072970:CDS
GCTACTGATGTTGCCGCTCG+TGG 0.558152 7_2:-70287523 Msa1072970:CDS
CCAAAACCAACAATAATCAA+AGG 0.558548 7_2:+70287192 None:intergenic
CAGAGTGACAGTGGGAGAGG+TGG 0.564403 7_2:-70287812 Msa1072970:CDS
AACAGGCCGTGCTGGTGACA+AGG 0.564433 7_2:-70287419 Msa1072970:CDS
TATATTAATGTATTCAATGG+TGG 0.566393 7_2:-70287067 Msa1072970:three_prime_UTR
GTTGTTGTTCCCACCGCGTA+TGG 0.569328 7_2:+70289806 None:intergenic
CATTGTTGCAGAAAAGAGCA+AGG 0.570141 7_2:+70287882 None:intergenic
TGATGTGCCAATTCTCTGGT+AGG 0.570886 7_2:+70288183 None:intergenic
TCAATCTCAGTATGATCAAG+AGG 0.572016 7_2:+70289057 None:intergenic
CGTGTCTCTGCTGTCTATGG+TGG 0.576322 7_2:-70288117 Msa1072970:CDS
TTTAAAGTTGCTGCCCTGCA+TGG 0.578481 7_2:-70287616 Msa1072970:CDS
GGTAATTTCTCCAGAAGCCA+CGG 0.578486 7_2:+70287727 None:intergenic
GGTCCATCGTTGGTCAGATT+AGG 0.580274 7_2:-70287918 Msa1072970:CDS
CCATTAGATGCATTCATGGA+AGG 0.582173 7_2:-70289354 Msa1072970:CDS
GTTTGGCTATTCGGGTATCA+GGG 0.582805 7_2:-70288470 Msa1072970:CDS
GGATCAGCCTGAACTTCAGA+AGG 0.585907 7_2:-70288235 Msa1072970:CDS
TGATTTAGAGGATGATCCAA+TGG 0.586529 7_2:-70289262 Msa1072970:CDS
GGCGCCGCCACCGAAGCCGA+AGG 0.588262 7_2:-70289310 Msa1072970:CDS
AACTTACCTGGTGCTTGATG+AGG 0.590884 7_2:-70287980 Msa1072970:CDS
CAGTTCAAAGAACTCAAGGC+AGG 0.593420 7_2:-70288078 Msa1072970:CDS
TTGCCTGTAAATAGCATAGG+GGG 0.595151 7_2:+70287131 None:intergenic
CATCGTTGGTCAGATTAGGC+CGG 0.596590 7_2:-70287914 Msa1072970:CDS
ACCAGAAACTCGACCATACG+CGG 0.600091 7_2:-70289819 None:intergenic
AGGATCGGAAAGGATTTCCC+TGG 0.600410 7_2:+70287837 None:intergenic
GGCCGTGCTGGTGACAAGGA+CGG 0.606801 7_2:-70287415 Msa1072970:CDS
AGCAATATCAAAGTTTACCA+CGG 0.609796 7_2:+70287477 None:intergenic
GATCAGCCTCATCAAGCACC+AGG 0.611022 7_2:+70287974 None:intergenic
GGCAATTTCTCAGAATCAGA+AGG 0.613201 7_2:+70287748 None:intergenic
AGTAGCAATAAGCACATGGT+AGG 0.613217 7_2:+70287540 None:intergenic
AACGATGATAACGCTGGTGG+TGG 0.614523 7_2:-70289402 Msa1072970:CDS
CCTGAACTTCAGAAGGAGGA+AGG 0.614956 7_2:-70288228 Msa1072970:CDS
TTGATCCTTATCACCATGCA+GGG 0.615126 7_2:+70287603 None:intergenic
TGAACAGTTCAAAGAACTCA+AGG 0.617345 7_2:-70288082 Msa1072970:CDS
CTGATTCTGAGAAATTGCCG+TGG 0.618831 7_2:-70287744 Msa1072970:CDS
CGATCCTATCAGAGTGACAG+TGG 0.622612 7_2:-70287821 Msa1072970:CDS
GAAGGATTTAGGGTTGACGT+TGG 0.628406 7_2:-70289220 Msa1072970:CDS
CGGCCTAATCTGACCAACGA+TGG 0.632293 7_2:+70287915 None:intergenic
CATCAGTAGCAATAAGCACA+TGG 0.632724 7_2:+70287536 None:intergenic
CTTGATGTCAAGACCACGAG+CGG 0.633460 7_2:+70287510 None:intergenic
GGAGGAACGTAAAGACGTTG+AGG 0.634079 7_2:+70289519 None:intergenic
TTATGCTGCTGCTAAAGCCG+TGG 0.635330 7_2:-70289154 Msa1072970:CDS
CTCCGTCCTTGTCACCAGCA+CGG 0.638268 7_2:+70287413 None:intergenic
CAAAGTCGAAAAGTTAGCCA+GGG 0.638925 7_2:-70287854 Msa1072970:CDS
TGGTGGTGGTGGTTGTGAAG+AGG 0.639489 7_2:-70289388 Msa1072970:CDS
TGCTGGTCAGAATGTGTCCA+CGG 0.644595 7_2:-70287323 Msa1072970:CDS
TCAGCCTGAACTTCAGAAGG+AGG 0.650481 7_2:-70288232 Msa1072970:CDS
TCACTCTGATAGGATCGGAA+AGG 0.651428 7_2:+70287827 None:intergenic
TGGATATGATTCTGATGAGG+AGG 0.658341 7_2:-70289178 Msa1072970:CDS
TGCTTCAATTTCATCCACAG+TGG 0.658468 7_2:+70287657 None:intergenic
CCGCAAGTAAGGTCCATCGT+TGG 0.658844 7_2:-70287928 Msa1072970:CDS
AACAACAACGATGATAACGC+TGG 0.659460 7_2:-70289408 Msa1072970:CDS
CATCAAGTCAATTAAAACCG+TGG 0.659638 7_2:-70287494 Msa1072970:CDS
CGAAACTATAGGTAGACTGA+CGG 0.661631 7_2:+70289556 None:intergenic
GGCACATCAGATATATCTCG+AGG 0.663704 7_2:-70288169 Msa1072970:CDS
GCTTGGCATTGTATAGACGT+CGG 0.665885 7_2:+70288357 None:intergenic
GAGTGACAGTGGGAGAGGTG+GGG 0.667890 7_2:-70287810 Msa1072970:CDS
ATGGGTGCTATAAAGAAACA+AGG 0.668755 7_2:-70288390 Msa1072970:CDS
AGCAAGATCCATCAACTCCG+TGG 0.674249 7_2:+70287306 None:intergenic
TTTGCCTGTAAATAGCATAG+GGG 0.678639 7_2:+70287130 None:intergenic
GATCCTATCAGAGTGACAGT+GGG 0.686740 7_2:-70287820 Msa1072970:CDS
GAAGCACAATTGGGTCAGAG+AGG 0.693962 7_2:-70287640 Msa1072970:CDS
GGAACGTAAAGACGTTGAGG+AGG 0.696141 7_2:+70289522 None:intergenic
TGCTGGATATGATTCTGATG+AGG 0.699809 7_2:-70289181 Msa1072970:CDS
AACAACGATGATAACGCTGG+TGG 0.703564 7_2:-70289405 Msa1072970:CDS
CCAACGATGGACCTTACTTG+CGG 0.706917 7_2:+70287928 None:intergenic
ATTCATGGAAGGAATACACG+AGG 0.768621 7_2:-70289343 Msa1072970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATTAATGTATTCAA+TGG - chr7_2:70289733-70289752 Msa1072970:five_prime_UTR 10.0%
!! AACATAAAAATAGAATTTCA+TGG + chr7_2:70287836-70287855 None:intergenic 15.0%
!!! ATTTTACAGAAATTTAAATC+TGG - chr7_2:70289238-70289257 Msa1072970:CDS 15.0%
!!! TTAGTACATATTTTTTGAAA+TGG - chr7_2:70289710-70289729 Msa1072970:five_prime_UTR 15.0%
!!! AAAAAGAAGGGTTTTAATTT+TGG + chr7_2:70287059-70287078 None:intergenic 20.0%
!! TTGAGTTTGAATAAAAAGAA+GGG + chr7_2:70287071-70287090 None:intergenic 20.0%
!! ACACGATAAATAAAATTTGA+GGG + chr7_2:70287117-70287136 None:intergenic 20.0%
!! TAGATATAAAGATGATTTAG+AGG - chr7_2:70287529-70287548 Msa1072970:CDS 20.0%
!! TCATAAAAATCCTTGTTAAA+AGG + chr7_2:70287779-70287798 None:intergenic 20.0%
!!! TTTTAACAAGGATTTTTATG+AGG - chr7_2:70287778-70287797 Msa1072970:CDS 20.0%
!!! TTAAGTTGATTATTCAAACA+GGG + chr7_2:70287952-70287971 None:intergenic 20.0%
!!! ATTAAGTTGATTATTCAAAC+AGG + chr7_2:70287953-70287972 None:intergenic 20.0%
!! TGAAGAAAAAATACTGTATA+GGG + chr7_2:70289538-70289557 None:intergenic 20.0%
!! ATGAAGAAAAAATACTGTAT+AGG + chr7_2:70289539-70289558 None:intergenic 20.0%
!! TATATTAATGTATTCAATGG+TGG - chr7_2:70289736-70289755 Msa1072970:five_prime_UTR 20.0%
!! GATAGAAGTTATATATCTAT+AGG - chr7_2:70289801-70289820 Msa1072970:five_prime_UTR 20.0%
! GTTGAGTTTGAATAAAAAGA+AGG + chr7_2:70287072-70287091 None:intergenic 25.0%
! ATAAAATTTGAGGGAGATAA+TGG + chr7_2:70287108-70287127 None:intergenic 25.0%
! CACACGATAAATAAAATTTG+AGG + chr7_2:70287118-70287137 None:intergenic 25.0%
! GTTAAATTACCTGATATTGA+AGG + chr7_2:70287809-70287828 None:intergenic 25.0%
!!! TAAGTTGATTATTCAAACAG+GGG + chr7_2:70287951-70287970 None:intergenic 25.0%
! ATATGCTTTAGCAAATTTCT+TGG + chr7_2:70288660-70288679 None:intergenic 25.0%
!!! AAGAAATTTGCTAAAGCATA+TGG - chr7_2:70288659-70288678 Msa1072970:intron 25.0%
!!! ATTAGTTTTTGCTTCCAAAA+AGG - chr7_2:70289123-70289142 Msa1072970:CDS 25.0%
! CTTTGATATTGCTAAAGATA+TGG - chr7_2:70289336-70289355 Msa1072970:CDS 25.0%
! TTATAACTCAAAAAGAAGCA+CGG - chr7_2:70289425-70289444 Msa1072970:CDS 25.0%
! CAAAACCAACAATAATCAAA+GGG + chr7_2:70289613-70289632 None:intergenic 25.0%
!!! GGTTTTAATTTTGGAGCTAT+GGG + chr7_2:70287050-70287069 None:intergenic 30.0%
TTCTTCTTGTCAAGAACAAT+AGG + chr7_2:70287710-70287729 None:intergenic 30.0%
! TGATTATCAGCCTTTTAACA+AGG - chr7_2:70287766-70287785 Msa1072970:CDS 30.0%
! TGTGTGTTGATATTTCACAT+GGG - chr7_2:70287909-70287928 Msa1072970:CDS 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr7_2:70288079-70288098 Msa1072970:CDS 30.0%
!! ATGTGGACATTAGTTGTTTT+CGG + chr7_2:70288123-70288142 None:intergenic 30.0%
TATTGAAAGAGCTAATGATG+TGG + chr7_2:70288140-70288159 None:intergenic 30.0%
AGCAAGATGTAACTGATTAT+AGG - chr7_2:70288306-70288325 Msa1072970:CDS 30.0%
AACTGATTATAGGAAGAGTT+TGG - chr7_2:70288316-70288335 Msa1072970:CDS 30.0%
!!! TCAAATGTTTTTACTGGCTT+AGG + chr7_2:70288368-70288387 None:intergenic 30.0%
TAAGCCAGTAAAAACATTTG+AGG - chr7_2:70288367-70288386 Msa1072970:CDS 30.0%
TAAAAACATTTGAGGACTGT+GGG - chr7_2:70288375-70288394 Msa1072970:CDS 30.0%
TTTATAGCACCCATAATTTG+TGG + chr7_2:70288407-70288426 None:intergenic 30.0%
GATAGACATGCTAAAAATGA+AGG - chr7_2:70288781-70288800 Msa1072970:intron 30.0%
ATCACCTTGATCAATCATTT+CGG + chr7_2:70289101-70289120 None:intergenic 30.0%
GATGAAATTGAAGCACAATT+GGG - chr7_2:70289154-70289173 Msa1072970:CDS 30.0%
AGCAATATCAAAGTTTACCA+CGG + chr7_2:70289329-70289348 None:intergenic 30.0%
CCAAAACCAACAATAATCAA+AGG + chr7_2:70289614-70289633 None:intergenic 30.0%
!!! CCTTTGATTATTGTTGGTTT+TGG - chr7_2:70289611-70289630 Msa1072970:exon 30.0%
! TTTTGCCTGTAAATAGCATA+GGG + chr7_2:70289677-70289696 None:intergenic 30.0%
! TTTTTGCCTGTAAATAGCAT+AGG + chr7_2:70289678-70289697 None:intergenic 30.0%
!!! GGGTTTTAATTTTGGAGCTA+TGG + chr7_2:70287051-70287070 None:intergenic 35.0%
!! TGAGGGAGATAATGGAATTT+AGG + chr7_2:70287100-70287119 None:intergenic 35.0%
GCTTCGAAATTTCACTAAGA+AGG + chr7_2:70287163-70287182 None:intergenic 35.0%
TTGAGATCGTTCGAAACTAT+AGG + chr7_2:70287261-70287280 None:intergenic 35.0%
GTTGTTTGATTGTTCTTCTC+TGG + chr7_2:70287378-70287397 None:intergenic 35.0%
AATACACGAGGAGATGAAAT+CGG - chr7_2:70287472-70287491 Msa1072970:CDS 35.0%
TGATTTAGAGGATGATCCAA+TGG - chr7_2:70287541-70287560 Msa1072970:CDS 35.0%
!!! ATCCAATGGAGAGTTTTTTG+AGG - chr7_2:70287555-70287574 Msa1072970:CDS 35.0%
!!! TCCAATGGAGAGTTTTTTGA+GGG - chr7_2:70287556-70287575 Msa1072970:CDS 35.0%
TCAATCTCAGTATGATCAAG+AGG + chr7_2:70287749-70287768 None:intergenic 35.0%
! GTGTGTGTTGATATTTCACA+TGG - chr7_2:70287908-70287927 Msa1072970:CDS 35.0%
! TTATTCAAACAGGGGTGTAA+TGG + chr7_2:70287943-70287962 None:intergenic 35.0%
TTTCAATAAGCTGTCCCTAA+CGG - chr7_2:70288152-70288171 Msa1072970:CDS 35.0%
CAACTTATAACATAGAGGCT+AGG + chr7_2:70288229-70288248 None:intergenic 35.0%
GCACTCAACTTATAACATAG+AGG + chr7_2:70288234-70288253 None:intergenic 35.0%
ATAGGAAGAGTTTGGCTATT+CGG - chr7_2:70288324-70288343 Msa1072970:CDS 35.0%
!! CAGTCCTCAAATGTTTTTAC+TGG + chr7_2:70288374-70288393 None:intergenic 35.0%
GTAAAAACATTTGAGGACTG+TGG - chr7_2:70288374-70288393 Msa1072970:CDS 35.0%
! ATGGGTGCTATAAAGAAACA+AGG - chr7_2:70288413-70288432 Msa1072970:CDS 35.0%
TATACAATGCCAAGCTTTAC+CGG - chr7_2:70288454-70288473 Msa1072970:CDS 35.0%
! CTTTCTGGTAGAGATATCAT+TGG - chr7_2:70288482-70288501 Msa1072970:CDS 35.0%
TGAACAGTTCAAAGAACTCA+AGG - chr7_2:70288721-70288740 Msa1072970:intron 35.0%
TTACCCGAAATGATTGATCA+AGG - chr7_2:70289094-70289113 Msa1072970:CDS 35.0%
TCACCTTGATCAATCATTTC+GGG + chr7_2:70289100-70289119 None:intergenic 35.0%
GGATGAAATTGAAGCACAAT+TGG - chr7_2:70289153-70289172 Msa1072970:CDS 35.0%
TAAGGATCAATCTTCTCGTA+TGG - chr7_2:70289213-70289232 Msa1072970:CDS 35.0%
CATCAAGTCAATTAAAACCG+TGG - chr7_2:70289309-70289328 Msa1072970:CDS 35.0%
CGTATCCCTTTGATTATTGT+TGG - chr7_2:70289605-70289624 Msa1072970:exon 35.0%
AATAGCATAGGGGGATAAAT+GGG + chr7_2:70289666-70289685 None:intergenic 35.0%
AAATAGCATAGGGGGATAAA+TGG + chr7_2:70289667-70289686 None:intergenic 35.0%
TTTGCCTGTAAATAGCATAG+GGG + chr7_2:70289676-70289695 None:intergenic 35.0%
!! AATGTATTCAATGGTGGACA+AGG - chr7_2:70289742-70289761 Msa1072970:five_prime_UTR 35.0%
!! AAGGTTAGTTTCTAAGAAGC+TGG - chr7_2:70289761-70289780 Msa1072970:five_prime_UTR 35.0%
GAGATGTCGAAGAGAAAGTT+CGG - chr7_2:70287203-70287222 Msa1072970:three_prime_UTR 40.0%
AAGAGAAAGTTCGGATTCGA+AGG - chr7_2:70287212-70287231 Msa1072970:three_prime_UTR 40.0%
AAGTTCGGATTCGAAGGTTT+CGG - chr7_2:70287218-70287237 Msa1072970:three_prime_UTR 40.0%
CGAAACTATAGGTAGACTGA+CGG + chr7_2:70287250-70287269 None:intergenic 40.0%
CATCGTACTCGATGTTATCA+AGG + chr7_2:70287349-70287368 None:intergenic 40.0%
! AACAACAACGATGATAACGC+TGG - chr7_2:70287395-70287414 Msa1072970:CDS 40.0%
CGATCCATTAGATGCATTCA+TGG - chr7_2:70287445-70287464 Msa1072970:CDS 40.0%
CCTTCCATGAATGCATCTAA+TGG + chr7_2:70287452-70287471 None:intergenic 40.0%
CCATTAGATGCATTCATGGA+AGG - chr7_2:70287449-70287468 Msa1072970:CDS 40.0%
ATTCATGGAAGGAATACACG+AGG - chr7_2:70287460-70287479 Msa1072970:CDS 40.0%
CTATCTTCCACTTTCTCCTT+CGG + chr7_2:70287512-70287531 None:intergenic 40.0%
TGCTGGATATGATTCTGATG+AGG - chr7_2:70287622-70287641 Msa1072970:CDS 40.0%
TGGATATGATTCTGATGAGG+AGG - chr7_2:70287625-70287644 Msa1072970:CDS 40.0%
ATCAATCAAACCAGCATCCA+CGG + chr7_2:70287669-70287688 None:intergenic 40.0%
GTATGATCAAGAGGAGCAAT+AGG + chr7_2:70287740-70287759 None:intergenic 40.0%
AAGCTATCTTGGAGAGCTTA+TGG - chr7_2:70288090-70288109 Msa1072970:CDS 40.0%
! GTGTTTTGTGTGCTTGATAC+AGG - chr7_2:70288275-70288294 Msa1072970:CDS 40.0%
TAGGAAGAGTTTGGCTATTC+GGG - chr7_2:70288325-70288344 Msa1072970:CDS 40.0%
! TGGGTTTGCTCCACAAATTA+TGG - chr7_2:70288394-70288413 Msa1072970:CDS 40.0%
! GGGTTTGCTCCACAAATTAT+GGG - chr7_2:70288395-70288414 Msa1072970:CDS 40.0%
ATCATTGGCATAGCGAAAAC+TGG - chr7_2:70288497-70288516 Msa1072970:CDS 40.0%
TCCTATGATCGTGCATATCA+TGG - chr7_2:70288547-70288566 Msa1072970:intron 40.0%
TCCATGATATGCACGATCAT+AGG + chr7_2:70288551-70288570 None:intergenic 40.0%
TATCTGATGTGCCAATTCTC+TGG + chr7_2:70288627-70288646 None:intergenic 40.0%
AGCATGTCTATCAATCTTCC+AGG + chr7_2:70288773-70288792 None:intergenic 40.0%
GCTGATCGAATGTTTGATCT+TGG - chr7_2:70288845-70288864 Msa1072970:intron 40.0%
TTGCAGAAAAGAGCAAGGTT+TGG + chr7_2:70288919-70288938 None:intergenic 40.0%
CATTGTTGCAGAAAAGAGCA+AGG + chr7_2:70288924-70288943 None:intergenic 40.0%
CAAAGTCGAAAAGTTAGCCA+GGG - chr7_2:70288949-70288968 Msa1072970:intron 40.0%
GGCAATTTCTCAGAATCAGA+AGG + chr7_2:70289058-70289077 None:intergenic 40.0%
TGCTTCAATTTCATCCACAG+TGG + chr7_2:70289149-70289168 None:intergenic 40.0%
TTGATCCTTATCACCATGCA+GGG + chr7_2:70289203-70289222 None:intergenic 40.0%
ATTGATCCTTATCACCATGC+AGG + chr7_2:70289204-70289223 None:intergenic 40.0%
AGTAGCAATAAGCACATGGT+AGG + chr7_2:70289266-70289285 None:intergenic 40.0%
CATCAGTAGCAATAAGCACA+TGG + chr7_2:70289270-70289289 None:intergenic 40.0%
GTTAATAGCTTAGTTGCTGC+TGG - chr7_2:70289463-70289482 Msa1072970:CDS 40.0%
! GTTGATGGATCTTGCTATGA+AGG - chr7_2:70289504-70289523 Msa1072970:CDS 40.0%
! TATCCCCCTATGCTATTTAC+AGG - chr7_2:70289669-70289688 Msa1072970:five_prime_UTR 40.0%
TTGCCTGTAAATAGCATAGG+GGG + chr7_2:70289675-70289694 None:intergenic 40.0%
! TTTGGAGCTATGGGTAGTAG+TGG + chr7_2:70287041-70287060 None:intergenic 45.0%
ATCGTGTGCAAGCTCAAGTT+AGG - chr7_2:70287130-70287149 Msa1072970:three_prime_UTR 45.0%
TCGTGTGCAAGCTCAAGTTA+GGG - chr7_2:70287131-70287150 Msa1072970:three_prime_UTR 45.0%
! TGGCTTTTACGAGATGAAGG+AGG + chr7_2:70287305-70287324 None:intergenic 45.0%
! TCGTGGCTTTTACGAGATGA+AGG + chr7_2:70287308-70287327 None:intergenic 45.0%
CGTTGTCTTCGAAATTGTCG+TGG + chr7_2:70287325-70287344 None:intergenic 45.0%
! AACAACGATGATAACGCTGG+TGG - chr7_2:70287398-70287417 Msa1072970:CDS 45.0%
GCCCTCAAAAAACTCTCCAT+TGG + chr7_2:70287560-70287579 None:intergenic 45.0%
!!! GAGTTTTTTGAGGGCGAAGA+AGG - chr7_2:70287565-70287584 Msa1072970:CDS 45.0%
TTGAGGGCGAAGAAGGATTT+AGG - chr7_2:70287572-70287591 Msa1072970:CDS 45.0%
TGAGGGCGAAGAAGGATTTA+GGG - chr7_2:70287573-70287592 Msa1072970:CDS 45.0%
! GAAGGATTTAGGGTTGACGT+TGG - chr7_2:70287583-70287602 Msa1072970:CDS 45.0%
GAGGAGTCACCTTCAATATC+AGG - chr7_2:70287797-70287816 Msa1072970:CDS 45.0%
GTTGAGTGCGATTGAACGTT+TGG - chr7_2:70288245-70288264 Msa1072970:CDS 45.0%
AGTTTGGCTATTCGGGTATC+AGG - chr7_2:70288332-70288351 Msa1072970:CDS 45.0%
GTTTGGCTATTCGGGTATCA+GGG - chr7_2:70288333-70288352 Msa1072970:CDS 45.0%
GCTTGGCATTGTATAGACGT+CGG + chr7_2:70288449-70288468 None:intergenic 45.0%
AAAGCACAACCGGTAAAGCT+TGG + chr7_2:70288466-70288485 None:intergenic 45.0%
! TCTCTACCAGAAAGCACAAC+CGG + chr7_2:70288476-70288495 None:intergenic 45.0%
GGTGCACATATCACTCCTAT+AGG + chr7_2:70288602-70288621 None:intergenic 45.0%
ATGTGCACCTACCAGAGAAT+TGG - chr7_2:70288613-70288632 Msa1072970:intron 45.0%
TGATGTGCCAATTCTCTGGT+AGG + chr7_2:70288623-70288642 None:intergenic 45.0%
GGCACATCAGATATATCTCG+AGG - chr7_2:70288634-70288653 Msa1072970:intron 45.0%
ATACGTGTCTCTGCTGTCTA+TGG - chr7_2:70288683-70288702 Msa1072970:intron 45.0%
CAGTTCAAAGAACTCAAGGC+AGG - chr7_2:70288725-70288744 Msa1072970:intron 45.0%
! CATGCTAAAAATGAAGGCGC+TGG - chr7_2:70288787-70288806 Msa1072970:intron 45.0%
AATGCTCAGAGCAACTTACC+TGG - chr7_2:70288811-70288830 Msa1072970:intron 45.0%
AACTTACCTGGTGCTTGATG+AGG - chr7_2:70288823-70288842 Msa1072970:intron 45.0%
TTGGATTTGAGCCGCAAGTA+AGG - chr7_2:70288864-70288883 Msa1072970:intron 45.0%
CAGAAAAGAGCAAGGTTTGG+CGG + chr7_2:70288916-70288935 None:intergenic 45.0%
! GCTAACTTTTCGACTTTGCG+AGG + chr7_2:70288947-70288966 None:intergenic 45.0%
GCAAAGTCGAAAAGTTAGCC+AGG - chr7_2:70288948-70288967 Msa1072970:intron 45.0%
TCACTCTGATAGGATCGGAA+AGG + chr7_2:70288979-70288998 None:intergenic 45.0%
CACTGTCACTCTGATAGGAT+CGG + chr7_2:70288984-70289003 None:intergenic 45.0%
GATCCTATCAGAGTGACAGT+GGG - chr7_2:70288983-70289002 Msa1072970:intron 45.0%
! CTGATTCTGAGAAATTGCCG+TGG - chr7_2:70289059-70289078 Msa1072970:CDS 45.0%
GGTAATTTCTCCAGAAGCCA+CGG + chr7_2:70289079-70289098 None:intergenic 45.0%
! TTCATCCACAGTGGCCTTTT+TGG + chr7_2:70289140-70289159 None:intergenic 45.0%
! TTTAAAGTTGCTGCCCTGCA+TGG - chr7_2:70289187-70289206 Msa1072970:CDS 45.0%
GACATGCATGTTCATCGCAT+TGG - chr7_2:70289358-70289377 Msa1072970:CDS 45.0%
GTTCATCGCATTGGAAGAAC+AGG - chr7_2:70289367-70289386 Msa1072970:CDS 45.0%
! CAAAAAGAAGCACGGTTTGC+TGG - chr7_2:70289433-70289452 Msa1072970:CDS 45.0%
GGAACGTAAAGACGTTGAGG+AGG + chr7_2:70287284-70287303 None:intergenic 50.0%
GGAGGAACGTAAAGACGTTG+AGG + chr7_2:70287287-70287306 None:intergenic 50.0%
! AACGATGATAACGCTGGTGG+TGG - chr7_2:70287401-70287420 Msa1072970:CDS 50.0%
TCCACTTTCTCCTTCGGCTT+CGG + chr7_2:70287506-70287525 None:intergenic 50.0%
! TTTAGGGTTGACGTTGGCGT+CGG - chr7_2:70287589-70287608 Msa1072970:CDS 50.0%
TTATGCTGCTGCTAAAGCCG+TGG - chr7_2:70287649-70287668 Msa1072970:CDS 50.0%
CGCACACTTGTGAACCGTTA+GGG + chr7_2:70288169-70288188 None:intergenic 50.0%
! GCTTTACCGGTTGTGCTTTC+TGG - chr7_2:70288467-70288486 Msa1072970:CDS 50.0%
! GGCATAGCGAAAACTGGTTC+TGG - chr7_2:70288503-70288522 Msa1072970:CDS 50.0%
GGATCAGCCTGAACTTCAGA+AGG - chr7_2:70288568-70288587 Msa1072970:intron 50.0%
TCAGCCTGAACTTCAGAAGG+AGG - chr7_2:70288571-70288590 Msa1072970:intron 50.0%
!! CCTTCCTCCTTCTGAAGTTC+AGG + chr7_2:70288578-70288597 None:intergenic 50.0%
CCTGAACTTCAGAAGGAGGA+AGG - chr7_2:70288575-70288594 Msa1072970:intron 50.0%
CAGAAGGAGGAAGGTCCTAT+AGG - chr7_2:70288584-70288603 Msa1072970:intron 50.0%
GAGATAGTTGTTGCTACGCC+TGG - chr7_2:70288752-70288771 Msa1072970:intron 50.0%
CCAACGATGGACCTTACTTG+CGG + chr7_2:70288878-70288897 None:intergenic 50.0%
GGTCCATCGTTGGTCAGATT+AGG - chr7_2:70288885-70288904 Msa1072970:intron 50.0%
CATCGTTGGTCAGATTAGGC+CGG - chr7_2:70288889-70288908 Msa1072970:intron 50.0%
AGGATCGGAAAGGATTTCCC+TGG + chr7_2:70288969-70288988 None:intergenic 50.0%
CGATCCTATCAGAGTGACAG+TGG - chr7_2:70288982-70289001 Msa1072970:intron 50.0%
TCTCCCACTGTCACTCTGAT+AGG + chr7_2:70288989-70289008 None:intergenic 50.0%
TATCAGAGTGACAGTGGGAG+AGG - chr7_2:70288988-70289007 Msa1072970:intron 50.0%
TGAGAAATTGCCGTGGCTTC+TGG - chr7_2:70289066-70289085 Msa1072970:CDS 50.0%
TGCTTCCAAAAAGGCCACTG+TGG - chr7_2:70289132-70289151 Msa1072970:CDS 50.0%
GAAGCACAATTGGGTCAGAG+AGG - chr7_2:70289163-70289182 Msa1072970:CDS 50.0%
CTTGATGTCAAGACCACGAG+CGG + chr7_2:70289296-70289315 None:intergenic 50.0%
!! AGCACGGTTTGCTGGTGAAT+TGG - chr7_2:70289441-70289460 Msa1072970:CDS 50.0%
TGCTGGTCAGAATGTGTCCA+CGG - chr7_2:70289480-70289499 Msa1072970:CDS 50.0%
GAATGTGTCCACGGAGTTGA+TGG - chr7_2:70289489-70289508 Msa1072970:CDS 50.0%
AGCAAGATCCATCAACTCCG+TGG + chr7_2:70289500-70289519 None:intergenic 50.0%
! GTTGTTGTTCCCACCGCGTA+TGG + chr7_2:70287000-70287019 None:intergenic 55.0%
!! GATGATAACGCTGGTGGTGG+TGG - chr7_2:70287404-70287423 Msa1072970:CDS 55.0%
!! TGGTGGTGGTGGTTGTGAAG+AGG - chr7_2:70287415-70287434 Msa1072970:CDS 55.0%
ACTTTCTCCTTCGGCTTCGG+TGG + chr7_2:70287503-70287522 None:intergenic 55.0%
ACCGAAGCCGAAGGAGAAAG+TGG - chr7_2:70287502-70287521 Msa1072970:CDS 55.0%
GCGCACACTTGTGAACCGTT+AGG + chr7_2:70288170-70288189 None:intergenic 55.0%
TCACAAGTGTGCGCTTGCGT+CGG - chr7_2:70288176-70288195 Msa1072970:CDS 55.0%
CGTGTCTCTGCTGTCTATGG+TGG - chr7_2:70288686-70288705 Msa1072970:intron 55.0%
GATCAGCCTCATCAAGCACC+AGG + chr7_2:70288832-70288851 None:intergenic 55.0%
CCGCAAGTAAGGTCCATCGT+TGG - chr7_2:70288875-70288894 Msa1072970:intron 55.0%
CGGCCTAATCTGACCAACGA+TGG + chr7_2:70288891-70288910 None:intergenic 55.0%
AAGAGCAAGGTTTGGCGGTC+CGG + chr7_2:70288911-70288930 None:intergenic 55.0%
AGAGTGACAGTGGGAGAGGT+GGG - chr7_2:70288992-70289011 Msa1072970:intron 55.0%
TGCTGCCCTGCATGGTGATA+AGG - chr7_2:70289195-70289214 Msa1072970:CDS 55.0%
ATTGGAAGAACAGGCCGTGC+TGG - chr7_2:70289376-70289395 Msa1072970:CDS 55.0%
TTCTCCTTCGGCTTCGGTGG+CGG + chr7_2:70287500-70287519 None:intergenic 60.0%
GCTGCTAAAGCCGTGGATGC+TGG - chr7_2:70287656-70287675 Msa1072970:CDS 60.0%
CAGAGTGACAGTGGGAGAGG+TGG - chr7_2:70288991-70289010 Msa1072970:intron 60.0%
GAGTGACAGTGGGAGAGGTG+GGG - chr7_2:70288993-70289012 Msa1072970:intron 60.0%
GCTACTGATGTTGCCGCTCG+TGG - chr7_2:70289280-70289299 Msa1072970:CDS 60.0%
! AACAGGCCGTGCTGGTGACA+AGG - chr7_2:70289384-70289403 Msa1072970:CDS 60.0%
CTCCGTCCTTGTCACCAGCA+CGG + chr7_2:70289393-70289412 None:intergenic 60.0%
GCGTCGGATGCGTTGCATGC+TGG - chr7_2:70287605-70287624 Msa1072970:CDS 65.0%
GACAGTGGGAGAGGTGGGGA+TGG - chr7_2:70288997-70289016 Msa1072970:intron 65.0%
! GGCCGTGCTGGTGACAAGGA+CGG - chr7_2:70289388-70289407 Msa1072970:CDS 65.0%
! GGCGCCGCCACCGAAGCCGA+AGG - chr7_2:70287493-70287512 Msa1072970:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70286992 70289833 70286992 ID=Msa1072970;Name=Msa1072970
chr7_2 mRNA 70286992 70289833 70286992 ID=Msa1072970-mRNA-1;Parent=Msa1072970;Name=Msa1072970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=214|1|1|1|1|1|2|263|628
chr7_2 exon 70286992 70288528 70286992 ID=Msa1072970-mRNA-1:exon:15812;Parent=Msa1072970-mRNA-1
chr7_2 exon 70289007 70289833 70289007 ID=Msa1072970-mRNA-1:exon:15811;Parent=Msa1072970-mRNA-1
chr7_2 five_prime_UTR 70289620 70289833 70289620 ID=Msa1072970-mRNA-1:five_prime_utr;Parent=Msa1072970-mRNA-1
chr7_2 CDS 70289007 70289619 70289007 ID=Msa1072970-mRNA-1:cds;Parent=Msa1072970-mRNA-1
chr7_2 CDS 70287255 70288528 70287255 ID=Msa1072970-mRNA-1:cds;Parent=Msa1072970-mRNA-1
chr7_2 three_prime_UTR 70286992 70287254 70286992 ID=Msa1072970-mRNA-1:three_prime_utr;Parent=Msa1072970-mRNA-1
Gene Sequence

>Msa1072970

ATGTCGAAGAGAAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCAGTCTACCTATAGTTTCGAACGATCTCAACCTCCTCAACGTCTTTACGTTCCTCCTTCATCTCGTAAAAGCCACGACAATTTCGAAGACAACGACCTTGATAACATCGAGTACGATGATGATTCCAGAGAAGAACAATCAAACAACAACAACGATGATAACGCTGGTGGTGGTGGTTGTGAAGAGGATGAAATCGATCCATTAGATGCATTCATGGAAGGAATACACGAGGAGATGAAATCGGCGCCGCCACCGAAGCCGAAGGAGAAAGTGGAAGATAGATATAAAGATGATTTAGAGGATGATCCAATGGAGAGTTTTTTGAGGGCGAAGAAGGATTTAGGGTTGACGTTGGCGTCGGATGCGTTGCATGCTGGATATGATTCTGATGAGGAGGTTTATGCTGCTGCTAAAGCCGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAATCCTATTGTTCTTGACAAGAAGAAAATCGAACCTATTGCTCCTCTTGATCATACTGAGATTGATTATCAGCCTTTTAACAAGGATTTTTATGAGGAGTCACCTTCAATATCAGGTATGAGTGAGCAAGATGTAACTGATTATAGGAAGAGTTTGGCTATTCGGGTATCAGGGTTTGAAGTTCCTAAGCCAGTAAAAACATTTGAGGACTGTGGGTTTGCTCCACAAATTATGGGTGCTATAAAGAAACAAGGTTATGAGAAGCCGACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCACATCAGATATATCTCGAGGCCAAGAAATTTGCTAAAGCATATGGAATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACGCCTGGAAGATTGATAGACATGCTAAAAATGAAGGCGCTGGCAATGCTCAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCGCAAGTAAGGTCCATCGTTGGTCAGATTAGGCCGGACCGCCAAACCTTGCTCTTTTCTGCAACAATGCCTCGCAAAGTCGAAAAGTTAGCCAGGGAAATCCTTTCCGATCCTATCAGAGTGACAGTGGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAATTGCCGTGGCTTCTGGAGAAATTACCCGAAATGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAAGCACAATTGGGTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAATCTTCTCGTATGGATATTTTACAGAAATTTAAATCTGGCACCTACCATGTGCTTATTGCTACTGATGTTGCCGCTCGTGGTCTTGACATCAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTTCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGACGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACGGAGTTGATGGATCTTGCTATGAAGGTAATGATGCCCTATACAGTATTTTTTCTTCATTACGAGTATTGA
Protein sequence

>Msa1072970

MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKSHDNFEDNDLDNIEYDDDSREEQSNNNNDDNAGGGGCEEDEIDPLDAFMEGIHEEMKSAPPPKPKEKVEDRYKDDLEDDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYQPFNKDFYEESPSISGMSEQDVTDYRKSLAIRVSGFEVPKPVKTFEDCGFAPQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALAMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIEAQLGQRGFKVAALHGDKDQSSRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKVMMPYTVFFLHYEY*